Multiple sequence alignment - TraesCS7D01G203000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G203000 chr7D 100.000 3152 0 0 1 3152 161389653 161392804 0.000000e+00 5821.0
1 TraesCS7D01G203000 chr7D 83.990 406 50 11 350 743 48751463 48751061 2.970000e-100 375.0
2 TraesCS7D01G203000 chr7D 82.238 411 52 16 349 745 614172317 614172720 5.040000e-88 335.0
3 TraesCS7D01G203000 chr7D 96.241 133 5 0 1 133 161302219 161302351 5.290000e-53 219.0
4 TraesCS7D01G203000 chr7B 96.605 2209 71 2 945 3152 123655520 123657725 0.000000e+00 3661.0
5 TraesCS7D01G203000 chr7B 86.364 176 11 7 784 958 123655339 123655502 2.500000e-41 180.0
6 TraesCS7D01G203000 chr7A 97.011 2108 54 6 1050 3152 162577896 162579999 0.000000e+00 3535.0
7 TraesCS7D01G203000 chr7A 81.752 411 53 17 349 743 225637797 225637393 1.090000e-84 324.0
8 TraesCS7D01G203000 chr7A 86.312 263 21 7 802 1052 162572343 162572602 4.010000e-69 272.0
9 TraesCS7D01G203000 chr7A 83.333 216 33 3 133 346 26051928 26052142 2.480000e-46 196.0
10 TraesCS7D01G203000 chr6D 81.657 1183 205 11 982 2157 8967567 8968744 0.000000e+00 972.0
11 TraesCS7D01G203000 chr6D 80.492 1179 217 12 989 2158 8552807 8551633 0.000000e+00 891.0
12 TraesCS7D01G203000 chr6D 95.522 134 6 0 3 136 365809279 365809412 6.850000e-52 215.0
13 TraesCS7D01G203000 chr6D 87.791 172 19 2 990 1160 33995137 33995307 1.920000e-47 200.0
14 TraesCS7D01G203000 chr6D 87.349 166 21 0 986 1151 8402431 8402266 1.150000e-44 191.0
15 TraesCS7D01G203000 chr6B 80.847 1180 213 12 982 2153 16428988 16430162 0.000000e+00 915.0
16 TraesCS7D01G203000 chr6B 80.074 1074 198 14 1095 2158 15225632 15224565 0.000000e+00 784.0
17 TraesCS7D01G203000 chr6B 78.725 1208 228 22 985 2169 14323508 14324709 0.000000e+00 780.0
18 TraesCS7D01G203000 chr6B 100.000 39 0 0 2697 2735 15747525 15747487 4.360000e-09 73.1
19 TraesCS7D01G203000 chr1B 80.779 1181 210 14 990 2158 630644738 630645913 0.000000e+00 907.0
20 TraesCS7D01G203000 chr1B 84.756 164 23 2 185 346 543498871 543499034 2.520000e-36 163.0
21 TraesCS7D01G203000 chr1A 80.120 1167 210 20 999 2154 589248496 589247341 0.000000e+00 850.0
22 TraesCS7D01G203000 chr4D 90.148 406 26 9 349 743 101440535 101440133 1.680000e-142 516.0
23 TraesCS7D01G203000 chr3A 85.294 408 41 13 349 743 675122040 675122441 1.360000e-108 403.0
24 TraesCS7D01G203000 chr3D 85.752 379 42 9 349 716 570272906 570272529 1.060000e-104 390.0
25 TraesCS7D01G203000 chr3D 95.522 134 6 0 3 136 147641665 147641532 6.850000e-52 215.0
26 TraesCS7D01G203000 chr3D 95.489 133 6 0 1 133 548595219 548595351 2.460000e-51 213.0
27 TraesCS7D01G203000 chr3B 82.641 409 48 15 347 745 693337180 693337575 1.080000e-89 340.0
28 TraesCS7D01G203000 chr3B 82.629 213 34 3 136 346 88771441 88771230 5.370000e-43 185.0
29 TraesCS7D01G203000 chr2A 81.841 402 59 10 349 743 689799692 689799298 3.030000e-85 326.0
30 TraesCS7D01G203000 chr1D 82.586 379 52 9 349 716 450205058 450205433 3.920000e-84 322.0
31 TraesCS7D01G203000 chr2D 96.947 131 4 0 3 133 546205233 546205363 1.470000e-53 220.0
32 TraesCS7D01G203000 chr2D 96.241 133 4 1 1 133 306886749 306886880 1.900000e-52 217.0
33 TraesCS7D01G203000 chr2D 93.662 142 8 1 3 144 62418302 62418442 8.860000e-51 211.0
34 TraesCS7D01G203000 chr4A 93.103 145 8 2 3 146 487838210 487838353 8.860000e-51 211.0
35 TraesCS7D01G203000 chr2B 92.361 144 11 0 5 148 56552908 56552765 4.120000e-49 206.0
36 TraesCS7D01G203000 chr6A 83.568 213 32 3 136 346 495551145 495550934 2.480000e-46 196.0
37 TraesCS7D01G203000 chr5A 83.234 167 26 2 133 298 444524389 444524554 5.450000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G203000 chr7D 161389653 161392804 3151 False 5821.0 5821 100.0000 1 3152 1 chr7D.!!$F2 3151
1 TraesCS7D01G203000 chr7B 123655339 123657725 2386 False 1920.5 3661 91.4845 784 3152 2 chr7B.!!$F1 2368
2 TraesCS7D01G203000 chr7A 162577896 162579999 2103 False 3535.0 3535 97.0110 1050 3152 1 chr7A.!!$F3 2102
3 TraesCS7D01G203000 chr6D 8967567 8968744 1177 False 972.0 972 81.6570 982 2157 1 chr6D.!!$F1 1175
4 TraesCS7D01G203000 chr6D 8551633 8552807 1174 True 891.0 891 80.4920 989 2158 1 chr6D.!!$R2 1169
5 TraesCS7D01G203000 chr6B 16428988 16430162 1174 False 915.0 915 80.8470 982 2153 1 chr6B.!!$F2 1171
6 TraesCS7D01G203000 chr6B 15224565 15225632 1067 True 784.0 784 80.0740 1095 2158 1 chr6B.!!$R1 1063
7 TraesCS7D01G203000 chr6B 14323508 14324709 1201 False 780.0 780 78.7250 985 2169 1 chr6B.!!$F1 1184
8 TraesCS7D01G203000 chr1B 630644738 630645913 1175 False 907.0 907 80.7790 990 2158 1 chr1B.!!$F2 1168
9 TraesCS7D01G203000 chr1A 589247341 589248496 1155 True 850.0 850 80.1200 999 2154 1 chr1A.!!$R1 1155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.032017 ACGGGCTCCTAATCCAGAGT 60.032 55.0 0.0 0.00 32.47 3.24 F
753 754 0.043637 TTCCCGTCCCTTCCCATAGT 59.956 55.0 0.0 0.00 0.00 2.12 F
807 808 0.107606 TTGGCGCCGGAAGCTAATAA 60.108 50.0 23.9 2.74 40.39 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1710 0.179084 GCACGCCTATACCTTCAGCA 60.179 55.000 0.0 0.0 0.0 4.41 R
2088 2142 0.654683 CTGCATAGTCTTTGGCGAGC 59.345 55.000 0.0 0.0 0.0 5.03 R
2491 2547 2.406024 CAGATGCAACAATCAAACGTGC 59.594 45.455 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.295407 TTGATAGGCTCCGAGGGG 57.705 61.111 0.00 0.00 0.00 4.79
18 19 2.140792 TTGATAGGCTCCGAGGGGC 61.141 63.158 5.20 5.20 0.00 5.80
19 20 2.524394 GATAGGCTCCGAGGGGCA 60.524 66.667 16.68 0.00 0.00 5.36
20 21 2.844839 ATAGGCTCCGAGGGGCAC 60.845 66.667 16.68 5.38 0.00 5.01
32 33 3.486263 GGGCACCGAATCGTCTTG 58.514 61.111 0.82 0.00 40.86 3.02
33 34 1.375523 GGGCACCGAATCGTCTTGT 60.376 57.895 0.82 0.00 40.86 3.16
34 35 1.635663 GGGCACCGAATCGTCTTGTG 61.636 60.000 0.82 3.67 40.86 3.33
35 36 1.132640 GCACCGAATCGTCTTGTGC 59.867 57.895 16.18 16.18 40.60 4.57
36 37 1.787847 CACCGAATCGTCTTGTGCC 59.212 57.895 0.82 0.00 0.00 5.01
37 38 0.670546 CACCGAATCGTCTTGTGCCT 60.671 55.000 0.82 0.00 0.00 4.75
38 39 0.892755 ACCGAATCGTCTTGTGCCTA 59.107 50.000 0.82 0.00 0.00 3.93
39 40 1.135083 ACCGAATCGTCTTGTGCCTAG 60.135 52.381 0.82 0.00 0.00 3.02
40 41 1.134367 CCGAATCGTCTTGTGCCTAGA 59.866 52.381 0.82 0.00 0.00 2.43
41 42 2.186076 CGAATCGTCTTGTGCCTAGAC 58.814 52.381 0.00 6.69 38.88 2.59
42 43 2.415491 CGAATCGTCTTGTGCCTAGACA 60.415 50.000 13.78 0.00 41.64 3.41
43 44 3.735208 CGAATCGTCTTGTGCCTAGACAT 60.735 47.826 13.78 6.69 41.64 3.06
44 45 2.654749 TCGTCTTGTGCCTAGACATG 57.345 50.000 13.78 0.00 41.64 3.21
45 46 2.167662 TCGTCTTGTGCCTAGACATGA 58.832 47.619 0.00 0.00 41.64 3.07
46 47 2.164422 TCGTCTTGTGCCTAGACATGAG 59.836 50.000 0.00 0.00 41.64 2.90
47 48 2.164422 CGTCTTGTGCCTAGACATGAGA 59.836 50.000 0.00 0.00 41.64 3.27
48 49 3.181482 CGTCTTGTGCCTAGACATGAGAT 60.181 47.826 0.00 0.00 41.64 2.75
49 50 4.036852 CGTCTTGTGCCTAGACATGAGATA 59.963 45.833 0.00 0.00 41.64 1.98
50 51 5.278709 CGTCTTGTGCCTAGACATGAGATAT 60.279 44.000 0.00 0.00 41.64 1.63
51 52 6.155827 GTCTTGTGCCTAGACATGAGATATC 58.844 44.000 0.00 0.00 41.29 1.63
52 53 6.015519 GTCTTGTGCCTAGACATGAGATATCT 60.016 42.308 4.47 4.47 41.29 1.98
53 54 7.175816 GTCTTGTGCCTAGACATGAGATATCTA 59.824 40.741 4.89 0.00 41.29 1.98
54 55 7.725844 TCTTGTGCCTAGACATGAGATATCTAA 59.274 37.037 4.89 0.00 0.00 2.10
55 56 7.839680 TGTGCCTAGACATGAGATATCTAAA 57.160 36.000 4.89 0.00 0.00 1.85
56 57 8.250143 TGTGCCTAGACATGAGATATCTAAAA 57.750 34.615 4.89 0.00 0.00 1.52
57 58 8.874156 TGTGCCTAGACATGAGATATCTAAAAT 58.126 33.333 4.89 0.00 0.00 1.82
58 59 9.149225 GTGCCTAGACATGAGATATCTAAAATG 57.851 37.037 4.89 12.10 0.00 2.32
59 60 7.821359 TGCCTAGACATGAGATATCTAAAATGC 59.179 37.037 4.89 6.93 0.00 3.56
60 61 8.040132 GCCTAGACATGAGATATCTAAAATGCT 58.960 37.037 4.89 12.50 0.00 3.79
61 62 9.585099 CCTAGACATGAGATATCTAAAATGCTC 57.415 37.037 4.89 9.82 0.00 4.26
66 67 8.512956 ACATGAGATATCTAAAATGCTCAATGC 58.487 33.333 4.89 0.00 43.25 3.56
79 80 3.621794 GCTCAATGCACACGATTAATCC 58.378 45.455 9.87 0.00 42.31 3.01
80 81 3.846023 GCTCAATGCACACGATTAATCCG 60.846 47.826 9.87 7.65 42.31 4.18
81 82 2.031560 TCAATGCACACGATTAATCCGC 59.968 45.455 9.87 8.08 0.00 5.54
82 83 1.662517 ATGCACACGATTAATCCGCA 58.337 45.000 9.87 12.89 0.00 5.69
83 84 1.443802 TGCACACGATTAATCCGCAA 58.556 45.000 9.87 0.00 0.00 4.85
84 85 1.807142 TGCACACGATTAATCCGCAAA 59.193 42.857 9.87 0.00 0.00 3.68
85 86 2.226674 TGCACACGATTAATCCGCAAAA 59.773 40.909 9.87 0.00 0.00 2.44
86 87 2.845967 GCACACGATTAATCCGCAAAAG 59.154 45.455 9.87 0.00 0.00 2.27
87 88 2.845967 CACACGATTAATCCGCAAAAGC 59.154 45.455 9.87 0.00 0.00 3.51
88 89 2.486203 ACACGATTAATCCGCAAAAGCA 59.514 40.909 9.87 0.00 0.00 3.91
89 90 2.845967 CACGATTAATCCGCAAAAGCAC 59.154 45.455 9.87 0.00 0.00 4.40
90 91 2.747446 ACGATTAATCCGCAAAAGCACT 59.253 40.909 9.87 0.00 0.00 4.40
91 92 3.100817 CGATTAATCCGCAAAAGCACTG 58.899 45.455 9.87 0.00 0.00 3.66
92 93 3.426159 CGATTAATCCGCAAAAGCACTGT 60.426 43.478 9.87 0.00 0.00 3.55
93 94 3.552604 TTAATCCGCAAAAGCACTGTC 57.447 42.857 0.00 0.00 0.00 3.51
94 95 1.317613 AATCCGCAAAAGCACTGTCA 58.682 45.000 0.00 0.00 0.00 3.58
95 96 1.538047 ATCCGCAAAAGCACTGTCAT 58.462 45.000 0.00 0.00 0.00 3.06
96 97 0.874390 TCCGCAAAAGCACTGTCATC 59.126 50.000 0.00 0.00 0.00 2.92
97 98 0.592637 CCGCAAAAGCACTGTCATCA 59.407 50.000 0.00 0.00 0.00 3.07
98 99 1.001487 CCGCAAAAGCACTGTCATCAA 60.001 47.619 0.00 0.00 0.00 2.57
99 100 2.352030 CCGCAAAAGCACTGTCATCAAT 60.352 45.455 0.00 0.00 0.00 2.57
100 101 2.912967 CGCAAAAGCACTGTCATCAATC 59.087 45.455 0.00 0.00 0.00 2.67
101 102 3.609879 CGCAAAAGCACTGTCATCAATCA 60.610 43.478 0.00 0.00 0.00 2.57
102 103 3.671928 GCAAAAGCACTGTCATCAATCAC 59.328 43.478 0.00 0.00 0.00 3.06
103 104 4.232221 CAAAAGCACTGTCATCAATCACC 58.768 43.478 0.00 0.00 0.00 4.02
104 105 2.865119 AGCACTGTCATCAATCACCA 57.135 45.000 0.00 0.00 0.00 4.17
105 106 3.144657 AGCACTGTCATCAATCACCAA 57.855 42.857 0.00 0.00 0.00 3.67
106 107 3.489355 AGCACTGTCATCAATCACCAAA 58.511 40.909 0.00 0.00 0.00 3.28
107 108 3.890756 AGCACTGTCATCAATCACCAAAA 59.109 39.130 0.00 0.00 0.00 2.44
108 109 3.983344 GCACTGTCATCAATCACCAAAAC 59.017 43.478 0.00 0.00 0.00 2.43
109 110 4.549458 CACTGTCATCAATCACCAAAACC 58.451 43.478 0.00 0.00 0.00 3.27
110 111 4.037803 CACTGTCATCAATCACCAAAACCA 59.962 41.667 0.00 0.00 0.00 3.67
111 112 4.037923 ACTGTCATCAATCACCAAAACCAC 59.962 41.667 0.00 0.00 0.00 4.16
112 113 4.214310 TGTCATCAATCACCAAAACCACT 58.786 39.130 0.00 0.00 0.00 4.00
113 114 4.648762 TGTCATCAATCACCAAAACCACTT 59.351 37.500 0.00 0.00 0.00 3.16
114 115 5.830457 TGTCATCAATCACCAAAACCACTTA 59.170 36.000 0.00 0.00 0.00 2.24
115 116 6.016360 TGTCATCAATCACCAAAACCACTTAG 60.016 38.462 0.00 0.00 0.00 2.18
116 117 5.476599 TCATCAATCACCAAAACCACTTAGG 59.523 40.000 0.00 0.00 45.67 2.69
117 118 4.148838 TCAATCACCAAAACCACTTAGGG 58.851 43.478 0.00 0.00 43.89 3.53
118 119 4.141135 TCAATCACCAAAACCACTTAGGGA 60.141 41.667 0.00 0.00 43.89 4.20
119 120 3.502123 TCACCAAAACCACTTAGGGAG 57.498 47.619 0.00 0.00 43.89 4.30
120 121 3.050089 TCACCAAAACCACTTAGGGAGA 58.950 45.455 0.00 0.00 43.89 3.71
121 122 3.460340 TCACCAAAACCACTTAGGGAGAA 59.540 43.478 0.00 0.00 43.89 2.87
122 123 4.079672 TCACCAAAACCACTTAGGGAGAAA 60.080 41.667 0.00 0.00 43.89 2.52
123 124 4.832823 CACCAAAACCACTTAGGGAGAAAT 59.167 41.667 0.00 0.00 43.89 2.17
124 125 6.007703 CACCAAAACCACTTAGGGAGAAATA 58.992 40.000 0.00 0.00 43.89 1.40
125 126 6.663523 CACCAAAACCACTTAGGGAGAAATAT 59.336 38.462 0.00 0.00 43.89 1.28
126 127 6.663523 ACCAAAACCACTTAGGGAGAAATATG 59.336 38.462 0.00 0.00 43.89 1.78
127 128 6.405842 CCAAAACCACTTAGGGAGAAATATGC 60.406 42.308 0.00 0.00 43.89 3.14
128 129 5.717119 AACCACTTAGGGAGAAATATGCT 57.283 39.130 0.00 0.00 43.89 3.79
129 130 5.297569 ACCACTTAGGGAGAAATATGCTC 57.702 43.478 0.00 0.00 43.89 4.26
130 131 4.971924 ACCACTTAGGGAGAAATATGCTCT 59.028 41.667 5.99 0.00 43.89 4.09
131 132 5.430089 ACCACTTAGGGAGAAATATGCTCTT 59.570 40.000 5.99 0.00 43.89 2.85
132 133 6.615726 ACCACTTAGGGAGAAATATGCTCTTA 59.384 38.462 5.99 0.00 43.89 2.10
133 134 7.293535 ACCACTTAGGGAGAAATATGCTCTTAT 59.706 37.037 5.99 0.00 43.89 1.73
134 135 8.816894 CCACTTAGGGAGAAATATGCTCTTATA 58.183 37.037 5.99 0.00 32.98 0.98
135 136 9.868277 CACTTAGGGAGAAATATGCTCTTATAG 57.132 37.037 5.99 3.22 32.98 1.31
150 151 5.860716 GCTCTTATAGCCATGCTTTTTATGC 59.139 40.000 0.00 0.00 46.25 3.14
151 152 6.331369 TCTTATAGCCATGCTTTTTATGCC 57.669 37.500 0.00 0.00 40.44 4.40
152 153 5.243730 TCTTATAGCCATGCTTTTTATGCCC 59.756 40.000 0.00 0.00 40.44 5.36
153 154 0.832626 AGCCATGCTTTTTATGCCCC 59.167 50.000 0.00 0.00 33.89 5.80
154 155 0.179048 GCCATGCTTTTTATGCCCCC 60.179 55.000 0.00 0.00 0.00 5.40
155 156 1.202330 CCATGCTTTTTATGCCCCCA 58.798 50.000 0.00 0.00 0.00 4.96
156 157 1.770061 CCATGCTTTTTATGCCCCCAT 59.230 47.619 0.00 0.00 35.44 4.00
157 158 2.224354 CCATGCTTTTTATGCCCCCATC 60.224 50.000 0.00 0.00 32.85 3.51
158 159 1.110442 TGCTTTTTATGCCCCCATCG 58.890 50.000 0.00 0.00 32.85 3.84
159 160 1.111277 GCTTTTTATGCCCCCATCGT 58.889 50.000 0.00 0.00 32.85 3.73
160 161 1.480545 GCTTTTTATGCCCCCATCGTT 59.519 47.619 0.00 0.00 32.85 3.85
161 162 2.738321 GCTTTTTATGCCCCCATCGTTG 60.738 50.000 0.00 0.00 32.85 4.10
162 163 0.820871 TTTTATGCCCCCATCGTTGC 59.179 50.000 0.00 0.00 32.85 4.17
163 164 1.040339 TTTATGCCCCCATCGTTGCC 61.040 55.000 0.00 0.00 32.85 4.52
164 165 2.216782 TTATGCCCCCATCGTTGCCA 62.217 55.000 0.00 0.00 32.85 4.92
165 166 2.623094 TATGCCCCCATCGTTGCCAG 62.623 60.000 0.00 0.00 32.85 4.85
166 167 4.424711 GCCCCCATCGTTGCCAGA 62.425 66.667 0.00 0.00 0.00 3.86
167 168 2.597340 CCCCCATCGTTGCCAGAT 59.403 61.111 0.00 0.00 0.00 2.90
168 169 1.825191 CCCCCATCGTTGCCAGATG 60.825 63.158 6.27 6.27 43.65 2.90
172 173 2.699073 CATCGTTGCCAGATGGAGG 58.301 57.895 2.18 0.00 41.16 4.30
180 181 3.091318 CCAGATGGAGGCATCACAC 57.909 57.895 0.00 0.00 37.39 3.82
181 182 0.812811 CCAGATGGAGGCATCACACG 60.813 60.000 0.00 0.00 37.39 4.49
182 183 0.812811 CAGATGGAGGCATCACACGG 60.813 60.000 0.00 0.00 34.19 4.94
183 184 0.977627 AGATGGAGGCATCACACGGA 60.978 55.000 0.00 0.00 34.19 4.69
184 185 0.107456 GATGGAGGCATCACACGGAT 59.893 55.000 0.00 0.00 36.39 4.18
193 194 2.898729 ATCACACGGATGGATGAGAC 57.101 50.000 0.00 0.00 34.06 3.36
194 195 1.555967 TCACACGGATGGATGAGACA 58.444 50.000 0.00 0.00 0.00 3.41
195 196 2.110578 TCACACGGATGGATGAGACAT 58.889 47.619 0.00 0.00 0.00 3.06
196 197 3.295973 TCACACGGATGGATGAGACATA 58.704 45.455 0.00 0.00 0.00 2.29
197 198 3.319122 TCACACGGATGGATGAGACATAG 59.681 47.826 0.00 0.00 0.00 2.23
198 199 2.036475 ACACGGATGGATGAGACATAGC 59.964 50.000 0.00 0.00 0.00 2.97
199 200 1.620819 ACGGATGGATGAGACATAGCC 59.379 52.381 0.00 0.00 0.00 3.93
200 201 1.898472 CGGATGGATGAGACATAGCCT 59.102 52.381 0.00 0.00 0.00 4.58
201 202 2.353505 CGGATGGATGAGACATAGCCTG 60.354 54.545 0.00 0.00 0.00 4.85
202 203 2.902486 GGATGGATGAGACATAGCCTGA 59.098 50.000 0.00 0.00 0.00 3.86
203 204 3.306641 GGATGGATGAGACATAGCCTGAC 60.307 52.174 0.00 0.00 0.00 3.51
204 205 2.042464 TGGATGAGACATAGCCTGACC 58.958 52.381 0.00 0.00 0.00 4.02
205 206 2.042464 GGATGAGACATAGCCTGACCA 58.958 52.381 0.00 0.00 0.00 4.02
206 207 2.636893 GGATGAGACATAGCCTGACCAT 59.363 50.000 0.00 0.00 0.00 3.55
207 208 3.556633 GGATGAGACATAGCCTGACCATG 60.557 52.174 0.00 0.00 0.00 3.66
208 209 2.750814 TGAGACATAGCCTGACCATGA 58.249 47.619 0.00 0.00 0.00 3.07
209 210 3.106827 TGAGACATAGCCTGACCATGAA 58.893 45.455 0.00 0.00 0.00 2.57
210 211 3.713248 TGAGACATAGCCTGACCATGAAT 59.287 43.478 0.00 0.00 0.00 2.57
211 212 4.164796 TGAGACATAGCCTGACCATGAATT 59.835 41.667 0.00 0.00 0.00 2.17
212 213 5.366477 TGAGACATAGCCTGACCATGAATTA 59.634 40.000 0.00 0.00 0.00 1.40
213 214 5.615289 AGACATAGCCTGACCATGAATTAC 58.385 41.667 0.00 0.00 0.00 1.89
214 215 5.130975 AGACATAGCCTGACCATGAATTACA 59.869 40.000 0.00 0.00 0.00 2.41
215 216 5.126067 ACATAGCCTGACCATGAATTACAC 58.874 41.667 0.00 0.00 0.00 2.90
216 217 5.104360 ACATAGCCTGACCATGAATTACACT 60.104 40.000 0.00 0.00 0.00 3.55
217 218 6.099701 ACATAGCCTGACCATGAATTACACTA 59.900 38.462 0.00 0.00 0.00 2.74
218 219 5.028549 AGCCTGACCATGAATTACACTAG 57.971 43.478 0.00 0.00 0.00 2.57
219 220 4.471386 AGCCTGACCATGAATTACACTAGT 59.529 41.667 0.00 0.00 0.00 2.57
220 221 4.572389 GCCTGACCATGAATTACACTAGTG 59.428 45.833 21.44 21.44 0.00 2.74
221 222 5.118990 CCTGACCATGAATTACACTAGTGG 58.881 45.833 26.12 8.17 34.19 4.00
222 223 5.097742 TGACCATGAATTACACTAGTGGG 57.902 43.478 26.12 16.58 34.19 4.61
223 224 4.780554 TGACCATGAATTACACTAGTGGGA 59.219 41.667 26.12 14.48 34.19 4.37
224 225 5.099042 ACCATGAATTACACTAGTGGGAC 57.901 43.478 26.12 12.81 34.19 4.46
225 226 4.080526 ACCATGAATTACACTAGTGGGACC 60.081 45.833 26.12 11.67 34.19 4.46
226 227 4.164221 CCATGAATTACACTAGTGGGACCT 59.836 45.833 26.12 7.94 34.19 3.85
227 228 5.365605 CCATGAATTACACTAGTGGGACCTA 59.634 44.000 26.12 6.92 34.19 3.08
228 229 6.043243 CCATGAATTACACTAGTGGGACCTAT 59.957 42.308 26.12 11.08 34.19 2.57
229 230 7.234782 CCATGAATTACACTAGTGGGACCTATA 59.765 40.741 26.12 5.48 34.19 1.31
230 231 7.834881 TGAATTACACTAGTGGGACCTATAG 57.165 40.000 26.12 0.00 34.19 1.31
231 232 7.589081 TGAATTACACTAGTGGGACCTATAGA 58.411 38.462 26.12 0.00 34.19 1.98
232 233 8.232412 TGAATTACACTAGTGGGACCTATAGAT 58.768 37.037 26.12 3.80 34.19 1.98
233 234 9.750783 GAATTACACTAGTGGGACCTATAGATA 57.249 37.037 26.12 2.82 34.19 1.98
234 235 9.531158 AATTACACTAGTGGGACCTATAGATAC 57.469 37.037 26.12 0.00 34.19 2.24
235 236 5.890049 ACACTAGTGGGACCTATAGATACC 58.110 45.833 26.12 0.00 34.19 2.73
236 237 5.616122 ACACTAGTGGGACCTATAGATACCT 59.384 44.000 26.12 0.00 34.19 3.08
237 238 6.104392 ACACTAGTGGGACCTATAGATACCTT 59.896 42.308 26.12 0.00 34.19 3.50
238 239 7.011382 CACTAGTGGGACCTATAGATACCTTT 58.989 42.308 15.49 0.00 0.00 3.11
239 240 7.011382 ACTAGTGGGACCTATAGATACCTTTG 58.989 42.308 0.00 0.00 0.00 2.77
240 241 4.593634 AGTGGGACCTATAGATACCTTTGC 59.406 45.833 0.00 0.00 0.00 3.68
241 242 3.908103 TGGGACCTATAGATACCTTTGCC 59.092 47.826 0.00 0.00 0.00 4.52
242 243 4.168883 GGGACCTATAGATACCTTTGCCT 58.831 47.826 0.00 0.00 0.00 4.75
243 244 4.597940 GGGACCTATAGATACCTTTGCCTT 59.402 45.833 0.00 0.00 0.00 4.35
244 245 5.280062 GGGACCTATAGATACCTTTGCCTTC 60.280 48.000 0.00 0.00 0.00 3.46
245 246 5.280062 GGACCTATAGATACCTTTGCCTTCC 60.280 48.000 0.00 0.00 0.00 3.46
246 247 5.477913 ACCTATAGATACCTTTGCCTTCCT 58.522 41.667 0.00 0.00 0.00 3.36
247 248 5.911766 ACCTATAGATACCTTTGCCTTCCTT 59.088 40.000 0.00 0.00 0.00 3.36
248 249 6.390165 ACCTATAGATACCTTTGCCTTCCTTT 59.610 38.462 0.00 0.00 0.00 3.11
249 250 6.712547 CCTATAGATACCTTTGCCTTCCTTTG 59.287 42.308 0.00 0.00 0.00 2.77
250 251 3.092301 AGATACCTTTGCCTTCCTTTGC 58.908 45.455 0.00 0.00 0.00 3.68
251 252 2.675658 TACCTTTGCCTTCCTTTGCT 57.324 45.000 0.00 0.00 0.00 3.91
252 253 1.793414 ACCTTTGCCTTCCTTTGCTT 58.207 45.000 0.00 0.00 0.00 3.91
253 254 2.118679 ACCTTTGCCTTCCTTTGCTTT 58.881 42.857 0.00 0.00 0.00 3.51
254 255 3.304829 ACCTTTGCCTTCCTTTGCTTTA 58.695 40.909 0.00 0.00 0.00 1.85
255 256 3.069586 ACCTTTGCCTTCCTTTGCTTTAC 59.930 43.478 0.00 0.00 0.00 2.01
256 257 3.554960 CCTTTGCCTTCCTTTGCTTTACC 60.555 47.826 0.00 0.00 0.00 2.85
257 258 1.243902 TGCCTTCCTTTGCTTTACCG 58.756 50.000 0.00 0.00 0.00 4.02
258 259 1.202830 TGCCTTCCTTTGCTTTACCGA 60.203 47.619 0.00 0.00 0.00 4.69
259 260 1.883926 GCCTTCCTTTGCTTTACCGAA 59.116 47.619 0.00 0.00 0.00 4.30
260 261 2.351447 GCCTTCCTTTGCTTTACCGAAC 60.351 50.000 0.00 0.00 0.00 3.95
261 262 2.882137 CCTTCCTTTGCTTTACCGAACA 59.118 45.455 0.00 0.00 0.00 3.18
262 263 3.304458 CCTTCCTTTGCTTTACCGAACAC 60.304 47.826 0.00 0.00 0.00 3.32
263 264 2.920524 TCCTTTGCTTTACCGAACACA 58.079 42.857 0.00 0.00 0.00 3.72
264 265 3.482436 TCCTTTGCTTTACCGAACACAT 58.518 40.909 0.00 0.00 0.00 3.21
265 266 3.500680 TCCTTTGCTTTACCGAACACATC 59.499 43.478 0.00 0.00 0.00 3.06
266 267 3.502211 CCTTTGCTTTACCGAACACATCT 59.498 43.478 0.00 0.00 0.00 2.90
267 268 4.023193 CCTTTGCTTTACCGAACACATCTT 60.023 41.667 0.00 0.00 0.00 2.40
268 269 5.507315 CCTTTGCTTTACCGAACACATCTTT 60.507 40.000 0.00 0.00 0.00 2.52
269 270 5.508200 TTGCTTTACCGAACACATCTTTT 57.492 34.783 0.00 0.00 0.00 2.27
270 271 5.103290 TGCTTTACCGAACACATCTTTTC 57.897 39.130 0.00 0.00 0.00 2.29
271 272 4.576873 TGCTTTACCGAACACATCTTTTCA 59.423 37.500 0.00 0.00 0.00 2.69
272 273 5.066634 TGCTTTACCGAACACATCTTTTCAA 59.933 36.000 0.00 0.00 0.00 2.69
273 274 6.149633 GCTTTACCGAACACATCTTTTCAAT 58.850 36.000 0.00 0.00 0.00 2.57
274 275 6.640907 GCTTTACCGAACACATCTTTTCAATT 59.359 34.615 0.00 0.00 0.00 2.32
275 276 7.169140 GCTTTACCGAACACATCTTTTCAATTT 59.831 33.333 0.00 0.00 0.00 1.82
276 277 8.934507 TTTACCGAACACATCTTTTCAATTTT 57.065 26.923 0.00 0.00 0.00 1.82
277 278 8.568732 TTACCGAACACATCTTTTCAATTTTC 57.431 30.769 0.00 0.00 0.00 2.29
278 279 5.983118 ACCGAACACATCTTTTCAATTTTCC 59.017 36.000 0.00 0.00 0.00 3.13
279 280 6.183360 ACCGAACACATCTTTTCAATTTTCCT 60.183 34.615 0.00 0.00 0.00 3.36
280 281 7.013846 ACCGAACACATCTTTTCAATTTTCCTA 59.986 33.333 0.00 0.00 0.00 2.94
281 282 7.326063 CCGAACACATCTTTTCAATTTTCCTAC 59.674 37.037 0.00 0.00 0.00 3.18
282 283 7.059488 CGAACACATCTTTTCAATTTTCCTACG 59.941 37.037 0.00 0.00 0.00 3.51
283 284 6.677913 ACACATCTTTTCAATTTTCCTACGG 58.322 36.000 0.00 0.00 0.00 4.02
284 285 6.092748 CACATCTTTTCAATTTTCCTACGGG 58.907 40.000 0.00 0.00 0.00 5.28
285 286 4.776795 TCTTTTCAATTTTCCTACGGGC 57.223 40.909 0.00 0.00 0.00 6.13
286 287 4.403734 TCTTTTCAATTTTCCTACGGGCT 58.596 39.130 0.00 0.00 0.00 5.19
287 288 4.457949 TCTTTTCAATTTTCCTACGGGCTC 59.542 41.667 0.00 0.00 0.00 4.70
288 289 2.413310 TCAATTTTCCTACGGGCTCC 57.587 50.000 0.00 0.00 0.00 4.70
289 290 1.913419 TCAATTTTCCTACGGGCTCCT 59.087 47.619 0.00 0.00 0.00 3.69
290 291 3.109151 TCAATTTTCCTACGGGCTCCTA 58.891 45.455 0.00 0.00 0.00 2.94
291 292 3.520317 TCAATTTTCCTACGGGCTCCTAA 59.480 43.478 0.00 0.00 0.00 2.69
292 293 4.165372 TCAATTTTCCTACGGGCTCCTAAT 59.835 41.667 0.00 0.00 0.00 1.73
293 294 3.832615 TTTTCCTACGGGCTCCTAATC 57.167 47.619 0.00 0.00 0.00 1.75
294 295 1.713297 TTCCTACGGGCTCCTAATCC 58.287 55.000 0.00 0.00 0.00 3.01
295 296 0.559205 TCCTACGGGCTCCTAATCCA 59.441 55.000 0.00 0.00 0.00 3.41
296 297 0.969894 CCTACGGGCTCCTAATCCAG 59.030 60.000 0.00 0.00 0.00 3.86
297 298 1.480683 CCTACGGGCTCCTAATCCAGA 60.481 57.143 0.00 0.00 0.00 3.86
298 299 1.889829 CTACGGGCTCCTAATCCAGAG 59.110 57.143 0.00 0.00 0.00 3.35
299 300 0.032017 ACGGGCTCCTAATCCAGAGT 60.032 55.000 0.00 0.00 32.47 3.24
300 301 1.123928 CGGGCTCCTAATCCAGAGTT 58.876 55.000 0.00 0.00 32.47 3.01
301 302 1.486726 CGGGCTCCTAATCCAGAGTTT 59.513 52.381 0.00 0.00 32.47 2.66
302 303 2.698797 CGGGCTCCTAATCCAGAGTTTA 59.301 50.000 0.00 0.00 32.47 2.01
303 304 3.134081 CGGGCTCCTAATCCAGAGTTTAA 59.866 47.826 0.00 0.00 32.47 1.52
304 305 4.452825 GGGCTCCTAATCCAGAGTTTAAC 58.547 47.826 0.00 0.00 32.47 2.01
305 306 4.452825 GGCTCCTAATCCAGAGTTTAACC 58.547 47.826 0.00 0.00 32.47 2.85
306 307 4.080526 GGCTCCTAATCCAGAGTTTAACCA 60.081 45.833 0.00 0.00 32.47 3.67
307 308 5.119694 GCTCCTAATCCAGAGTTTAACCAG 58.880 45.833 0.00 0.00 32.47 4.00
308 309 5.675538 CTCCTAATCCAGAGTTTAACCAGG 58.324 45.833 0.00 0.00 0.00 4.45
309 310 4.080526 TCCTAATCCAGAGTTTAACCAGGC 60.081 45.833 0.00 0.00 0.00 4.85
310 311 4.080299 CCTAATCCAGAGTTTAACCAGGCT 60.080 45.833 0.00 0.00 0.00 4.58
311 312 5.130477 CCTAATCCAGAGTTTAACCAGGCTA 59.870 44.000 0.00 0.00 0.00 3.93
312 313 5.717119 AATCCAGAGTTTAACCAGGCTAT 57.283 39.130 0.00 0.00 0.00 2.97
313 314 5.717119 ATCCAGAGTTTAACCAGGCTATT 57.283 39.130 0.00 0.00 0.00 1.73
314 315 5.099042 TCCAGAGTTTAACCAGGCTATTC 57.901 43.478 0.00 0.00 0.00 1.75
315 316 4.080526 TCCAGAGTTTAACCAGGCTATTCC 60.081 45.833 0.00 0.00 0.00 3.01
316 317 4.200092 CAGAGTTTAACCAGGCTATTCCC 58.800 47.826 0.00 0.00 34.51 3.97
317 318 3.850173 AGAGTTTAACCAGGCTATTCCCA 59.150 43.478 0.00 0.00 34.51 4.37
318 319 4.080299 AGAGTTTAACCAGGCTATTCCCAG 60.080 45.833 0.00 0.00 34.51 4.45
319 320 3.053619 AGTTTAACCAGGCTATTCCCAGG 60.054 47.826 0.00 0.00 36.78 4.45
320 321 1.518367 TAACCAGGCTATTCCCAGGG 58.482 55.000 0.00 0.00 35.45 4.45
321 322 1.289244 AACCAGGCTATTCCCAGGGG 61.289 60.000 5.33 0.92 35.45 4.79
322 323 1.697754 CCAGGCTATTCCCAGGGGT 60.698 63.158 5.33 0.00 36.47 4.95
323 324 1.289244 CCAGGCTATTCCCAGGGGTT 61.289 60.000 5.33 0.00 36.47 4.11
324 325 0.183731 CAGGCTATTCCCAGGGGTTC 59.816 60.000 5.33 0.00 36.47 3.62
325 326 0.994050 AGGCTATTCCCAGGGGTTCC 60.994 60.000 5.33 0.29 36.47 3.62
326 327 0.994050 GGCTATTCCCAGGGGTTCCT 60.994 60.000 5.33 0.00 46.26 3.36
327 328 0.474614 GCTATTCCCAGGGGTTCCTC 59.525 60.000 5.33 0.00 42.67 3.71
328 329 1.977202 GCTATTCCCAGGGGTTCCTCT 60.977 57.143 5.33 0.00 42.67 3.69
329 330 1.771255 CTATTCCCAGGGGTTCCTCTG 59.229 57.143 11.47 11.47 42.67 3.35
330 331 0.178831 ATTCCCAGGGGTTCCTCTGT 60.179 55.000 16.34 0.00 42.67 3.41
331 332 0.402861 TTCCCAGGGGTTCCTCTGTT 60.403 55.000 16.34 0.00 42.67 3.16
332 333 0.402861 TCCCAGGGGTTCCTCTGTTT 60.403 55.000 16.34 0.00 42.67 2.83
333 334 0.482887 CCCAGGGGTTCCTCTGTTTT 59.517 55.000 16.34 0.00 42.67 2.43
334 335 1.547901 CCCAGGGGTTCCTCTGTTTTC 60.548 57.143 16.34 0.00 42.67 2.29
335 336 1.425448 CCAGGGGTTCCTCTGTTTTCT 59.575 52.381 16.34 0.00 42.67 2.52
336 337 2.642807 CCAGGGGTTCCTCTGTTTTCTA 59.357 50.000 16.34 0.00 42.67 2.10
337 338 3.307762 CCAGGGGTTCCTCTGTTTTCTAG 60.308 52.174 16.34 0.00 42.67 2.43
338 339 2.306219 AGGGGTTCCTCTGTTTTCTAGC 59.694 50.000 0.00 0.00 39.80 3.42
339 340 2.306219 GGGGTTCCTCTGTTTTCTAGCT 59.694 50.000 0.00 0.00 0.00 3.32
340 341 3.244946 GGGGTTCCTCTGTTTTCTAGCTT 60.245 47.826 0.00 0.00 0.00 3.74
341 342 4.004314 GGGTTCCTCTGTTTTCTAGCTTC 58.996 47.826 0.00 0.00 0.00 3.86
342 343 4.004314 GGTTCCTCTGTTTTCTAGCTTCC 58.996 47.826 0.00 0.00 0.00 3.46
343 344 3.983044 TCCTCTGTTTTCTAGCTTCCC 57.017 47.619 0.00 0.00 0.00 3.97
344 345 3.248024 TCCTCTGTTTTCTAGCTTCCCA 58.752 45.455 0.00 0.00 0.00 4.37
345 346 3.008049 TCCTCTGTTTTCTAGCTTCCCAC 59.992 47.826 0.00 0.00 0.00 4.61
346 347 2.996621 CTCTGTTTTCTAGCTTCCCACG 59.003 50.000 0.00 0.00 0.00 4.94
347 348 2.076863 CTGTTTTCTAGCTTCCCACGG 58.923 52.381 0.00 0.00 0.00 4.94
348 349 1.271163 TGTTTTCTAGCTTCCCACGGG 60.271 52.381 0.00 0.00 0.00 5.28
349 350 0.326927 TTTTCTAGCTTCCCACGGGG 59.673 55.000 0.00 0.00 46.11 5.73
360 361 3.970205 CCACGGGGGAAATACACTT 57.030 52.632 0.00 0.00 40.01 3.16
361 362 2.209690 CCACGGGGGAAATACACTTT 57.790 50.000 0.00 0.00 40.01 2.66
362 363 1.816224 CCACGGGGGAAATACACTTTG 59.184 52.381 0.00 0.00 40.01 2.77
363 364 1.816224 CACGGGGGAAATACACTTTGG 59.184 52.381 0.00 0.00 0.00 3.28
364 365 1.426215 ACGGGGGAAATACACTTTGGT 59.574 47.619 0.00 0.00 0.00 3.67
365 366 2.158430 ACGGGGGAAATACACTTTGGTT 60.158 45.455 0.00 0.00 0.00 3.67
366 367 2.490509 CGGGGGAAATACACTTTGGTTC 59.509 50.000 0.00 0.00 0.00 3.62
367 368 2.829720 GGGGGAAATACACTTTGGTTCC 59.170 50.000 0.00 0.00 0.00 3.62
368 369 3.501568 GGGGGAAATACACTTTGGTTCCT 60.502 47.826 0.00 0.00 0.00 3.36
369 370 3.509967 GGGGAAATACACTTTGGTTCCTG 59.490 47.826 0.00 0.00 0.00 3.86
370 371 3.509967 GGGAAATACACTTTGGTTCCTGG 59.490 47.826 0.00 0.00 0.00 4.45
371 372 4.149598 GGAAATACACTTTGGTTCCTGGT 58.850 43.478 0.00 0.00 0.00 4.00
372 373 4.587262 GGAAATACACTTTGGTTCCTGGTT 59.413 41.667 0.00 0.00 0.00 3.67
373 374 5.508994 GGAAATACACTTTGGTTCCTGGTTG 60.509 44.000 0.00 0.00 0.00 3.77
374 375 2.525105 ACACTTTGGTTCCTGGTTGT 57.475 45.000 0.00 0.00 0.00 3.32
375 376 3.655615 ACACTTTGGTTCCTGGTTGTA 57.344 42.857 0.00 0.00 0.00 2.41
376 377 4.178956 ACACTTTGGTTCCTGGTTGTAT 57.821 40.909 0.00 0.00 0.00 2.29
377 378 5.313280 ACACTTTGGTTCCTGGTTGTATA 57.687 39.130 0.00 0.00 0.00 1.47
378 379 5.887754 ACACTTTGGTTCCTGGTTGTATAT 58.112 37.500 0.00 0.00 0.00 0.86
379 380 7.023171 ACACTTTGGTTCCTGGTTGTATATA 57.977 36.000 0.00 0.00 0.00 0.86
380 381 6.882678 ACACTTTGGTTCCTGGTTGTATATAC 59.117 38.462 5.89 5.89 0.00 1.47
381 382 6.882140 CACTTTGGTTCCTGGTTGTATATACA 59.118 38.462 11.62 11.62 0.00 2.29
382 383 6.882678 ACTTTGGTTCCTGGTTGTATATACAC 59.117 38.462 15.20 10.24 35.64 2.90
383 384 5.362105 TGGTTCCTGGTTGTATATACACC 57.638 43.478 15.20 17.88 35.64 4.16
384 385 4.164604 TGGTTCCTGGTTGTATATACACCC 59.835 45.833 19.76 19.76 39.02 4.61
385 386 4.411212 GGTTCCTGGTTGTATATACACCCT 59.589 45.833 24.87 0.00 39.28 4.34
386 387 5.603813 GGTTCCTGGTTGTATATACACCCTA 59.396 44.000 24.87 13.50 39.28 3.53
387 388 6.271624 GGTTCCTGGTTGTATATACACCCTAT 59.728 42.308 24.87 0.00 39.28 2.57
388 389 7.455638 GGTTCCTGGTTGTATATACACCCTATA 59.544 40.741 24.87 11.03 39.28 1.31
389 390 9.043548 GTTCCTGGTTGTATATACACCCTATAT 57.956 37.037 24.87 0.00 39.28 0.86
390 391 8.603898 TCCTGGTTGTATATACACCCTATATG 57.396 38.462 24.87 12.05 39.28 1.78
391 392 8.403474 TCCTGGTTGTATATACACCCTATATGA 58.597 37.037 24.87 13.66 39.28 2.15
392 393 9.042450 CCTGGTTGTATATACACCCTATATGAA 57.958 37.037 24.87 7.01 39.28 2.57
394 395 9.831682 TGGTTGTATATACACCCTATATGAAGA 57.168 33.333 24.87 4.15 39.28 2.87
469 470 9.382275 AGATTAAACTTGATTTTGTTTTGCACT 57.618 25.926 0.00 0.00 37.53 4.40
472 473 9.646427 TTAAACTTGATTTTGTTTTGCACTAGT 57.354 25.926 0.00 0.00 37.53 2.57
474 475 8.628882 AACTTGATTTTGTTTTGCACTAGTAC 57.371 30.769 0.00 0.00 0.00 2.73
475 476 7.767261 ACTTGATTTTGTTTTGCACTAGTACA 58.233 30.769 0.00 0.00 0.00 2.90
476 477 8.413229 ACTTGATTTTGTTTTGCACTAGTACAT 58.587 29.630 0.00 0.00 0.00 2.29
477 478 9.891828 CTTGATTTTGTTTTGCACTAGTACATA 57.108 29.630 0.00 0.00 0.00 2.29
485 486 9.672086 TGTTTTGCACTAGTACATAAATTTCAC 57.328 29.630 0.00 0.00 0.00 3.18
486 487 8.837059 GTTTTGCACTAGTACATAAATTTCACG 58.163 33.333 0.00 0.00 0.00 4.35
487 488 7.892778 TTGCACTAGTACATAAATTTCACGA 57.107 32.000 0.00 0.00 0.00 4.35
488 489 7.892778 TGCACTAGTACATAAATTTCACGAA 57.107 32.000 0.00 0.00 0.00 3.85
489 490 8.312896 TGCACTAGTACATAAATTTCACGAAA 57.687 30.769 0.00 0.00 34.46 3.46
490 491 8.775527 TGCACTAGTACATAAATTTCACGAAAA 58.224 29.630 0.00 0.00 33.56 2.29
491 492 9.601971 GCACTAGTACATAAATTTCACGAAAAA 57.398 29.630 0.00 0.00 33.56 1.94
558 559 7.974675 AGTCAATATTCACACTATTTTGACCG 58.025 34.615 12.39 0.00 41.14 4.79
559 560 7.822334 AGTCAATATTCACACTATTTTGACCGA 59.178 33.333 12.39 0.00 41.14 4.69
560 561 8.447833 GTCAATATTCACACTATTTTGACCGAA 58.552 33.333 0.00 0.00 37.68 4.30
561 562 9.004717 TCAATATTCACACTATTTTGACCGAAA 57.995 29.630 0.00 0.00 0.00 3.46
562 563 9.619316 CAATATTCACACTATTTTGACCGAAAA 57.381 29.630 0.00 0.00 37.93 2.29
566 567 7.922505 TCACACTATTTTGACCGAAAATTTG 57.077 32.000 0.00 0.00 40.73 2.32
567 568 7.484975 TCACACTATTTTGACCGAAAATTTGT 58.515 30.769 0.00 0.00 40.73 2.83
568 569 7.646130 TCACACTATTTTGACCGAAAATTTGTC 59.354 33.333 0.00 0.00 40.73 3.18
569 570 7.647715 CACACTATTTTGACCGAAAATTTGTCT 59.352 33.333 8.19 0.00 40.73 3.41
570 571 8.194769 ACACTATTTTGACCGAAAATTTGTCTT 58.805 29.630 8.19 0.00 40.73 3.01
571 572 9.030301 CACTATTTTGACCGAAAATTTGTCTTT 57.970 29.630 8.19 0.00 40.73 2.52
572 573 9.594478 ACTATTTTGACCGAAAATTTGTCTTTT 57.406 25.926 8.19 0.00 40.73 2.27
606 607 9.679661 AAAGTCAAAGGGTGATTTTATTTTTGT 57.320 25.926 0.00 0.00 42.54 2.83
607 608 8.661352 AGTCAAAGGGTGATTTTATTTTTGTG 57.339 30.769 0.00 0.00 38.90 3.33
608 609 8.482128 AGTCAAAGGGTGATTTTATTTTTGTGA 58.518 29.630 0.00 0.00 38.90 3.58
609 610 9.103861 GTCAAAGGGTGATTTTATTTTTGTGAA 57.896 29.630 0.00 0.00 38.90 3.18
610 611 9.672673 TCAAAGGGTGATTTTATTTTTGTGAAA 57.327 25.926 0.00 0.00 0.00 2.69
686 687 9.002080 CAGATTTTTGACTTTTTGTTGAATTGC 57.998 29.630 0.00 0.00 0.00 3.56
687 688 8.949177 AGATTTTTGACTTTTTGTTGAATTGCT 58.051 25.926 0.00 0.00 0.00 3.91
733 734 6.808829 TGTATATACACCTAGGAACCAAACG 58.191 40.000 17.98 0.00 0.00 3.60
734 735 5.945144 ATATACACCTAGGAACCAAACGT 57.055 39.130 17.98 1.86 0.00 3.99
735 736 4.628963 ATACACCTAGGAACCAAACGTT 57.371 40.909 17.98 0.00 37.41 3.99
748 749 3.316760 ACGTTCCCGTCCCTTCCC 61.317 66.667 0.00 0.00 46.28 3.97
749 750 3.315949 CGTTCCCGTCCCTTCCCA 61.316 66.667 0.00 0.00 0.00 4.37
750 751 2.666098 CGTTCCCGTCCCTTCCCAT 61.666 63.158 0.00 0.00 0.00 4.00
751 752 1.332144 CGTTCCCGTCCCTTCCCATA 61.332 60.000 0.00 0.00 0.00 2.74
752 753 0.468648 GTTCCCGTCCCTTCCCATAG 59.531 60.000 0.00 0.00 0.00 2.23
753 754 0.043637 TTCCCGTCCCTTCCCATAGT 59.956 55.000 0.00 0.00 0.00 2.12
754 755 0.043637 TCCCGTCCCTTCCCATAGTT 59.956 55.000 0.00 0.00 0.00 2.24
755 756 0.916809 CCCGTCCCTTCCCATAGTTT 59.083 55.000 0.00 0.00 0.00 2.66
756 757 1.283905 CCCGTCCCTTCCCATAGTTTT 59.716 52.381 0.00 0.00 0.00 2.43
757 758 2.291346 CCCGTCCCTTCCCATAGTTTTT 60.291 50.000 0.00 0.00 0.00 1.94
758 759 3.054213 CCCGTCCCTTCCCATAGTTTTTA 60.054 47.826 0.00 0.00 0.00 1.52
759 760 4.385977 CCCGTCCCTTCCCATAGTTTTTAT 60.386 45.833 0.00 0.00 0.00 1.40
760 761 4.820173 CCGTCCCTTCCCATAGTTTTTATC 59.180 45.833 0.00 0.00 0.00 1.75
761 762 5.433526 CGTCCCTTCCCATAGTTTTTATCA 58.566 41.667 0.00 0.00 0.00 2.15
762 763 5.883673 CGTCCCTTCCCATAGTTTTTATCAA 59.116 40.000 0.00 0.00 0.00 2.57
763 764 6.183360 CGTCCCTTCCCATAGTTTTTATCAAC 60.183 42.308 0.00 0.00 0.00 3.18
764 765 6.096423 GTCCCTTCCCATAGTTTTTATCAACC 59.904 42.308 0.00 0.00 0.00 3.77
765 766 6.011096 TCCCTTCCCATAGTTTTTATCAACCT 60.011 38.462 0.00 0.00 0.00 3.50
766 767 6.667848 CCCTTCCCATAGTTTTTATCAACCTT 59.332 38.462 0.00 0.00 0.00 3.50
767 768 7.180229 CCCTTCCCATAGTTTTTATCAACCTTT 59.820 37.037 0.00 0.00 0.00 3.11
768 769 8.034804 CCTTCCCATAGTTTTTATCAACCTTTG 58.965 37.037 0.00 0.00 0.00 2.77
769 770 6.930731 TCCCATAGTTTTTATCAACCTTTGC 58.069 36.000 0.00 0.00 0.00 3.68
770 771 6.495181 TCCCATAGTTTTTATCAACCTTTGCA 59.505 34.615 0.00 0.00 0.00 4.08
771 772 6.589907 CCCATAGTTTTTATCAACCTTTGCAC 59.410 38.462 0.00 0.00 0.00 4.57
772 773 6.589907 CCATAGTTTTTATCAACCTTTGCACC 59.410 38.462 0.00 0.00 0.00 5.01
773 774 5.606348 AGTTTTTATCAACCTTTGCACCA 57.394 34.783 0.00 0.00 0.00 4.17
774 775 5.983540 AGTTTTTATCAACCTTTGCACCAA 58.016 33.333 0.00 0.00 0.00 3.67
775 776 6.410540 AGTTTTTATCAACCTTTGCACCAAA 58.589 32.000 0.00 0.00 0.00 3.28
776 777 7.053498 AGTTTTTATCAACCTTTGCACCAAAT 58.947 30.769 0.00 0.00 32.70 2.32
777 778 6.857777 TTTTATCAACCTTTGCACCAAATG 57.142 33.333 0.00 0.00 32.70 2.32
778 779 2.906691 TCAACCTTTGCACCAAATGG 57.093 45.000 0.00 0.00 42.17 3.16
779 780 2.392662 TCAACCTTTGCACCAAATGGA 58.607 42.857 6.42 0.00 38.94 3.41
780 781 2.364970 TCAACCTTTGCACCAAATGGAG 59.635 45.455 6.42 0.00 38.94 3.86
807 808 0.107606 TTGGCGCCGGAAGCTAATAA 60.108 50.000 23.90 2.74 40.39 1.40
834 835 2.813754 TGGGCTCGATTTGAACTTTCAG 59.186 45.455 0.00 0.00 38.61 3.02
843 844 9.289303 CTCGATTTGAACTTTCAGAAAGAAAAA 57.711 29.630 26.72 20.96 45.11 1.94
844 845 9.289303 TCGATTTGAACTTTCAGAAAGAAAAAG 57.711 29.630 26.72 18.71 45.11 2.27
845 846 8.534778 CGATTTGAACTTTCAGAAAGAAAAAGG 58.465 33.333 26.72 15.03 45.11 3.11
846 847 9.371136 GATTTGAACTTTCAGAAAGAAAAAGGT 57.629 29.630 26.72 10.95 45.11 3.50
847 848 9.725019 ATTTGAACTTTCAGAAAGAAAAAGGTT 57.275 25.926 26.72 11.22 45.11 3.50
848 849 8.532977 TTGAACTTTCAGAAAGAAAAAGGTTG 57.467 30.769 26.72 0.42 45.11 3.77
850 851 5.977635 ACTTTCAGAAAGAAAAAGGTTGGG 58.022 37.500 26.72 0.00 45.11 4.12
851 852 4.400529 TTCAGAAAGAAAAAGGTTGGGC 57.599 40.909 0.00 0.00 32.05 5.36
852 853 3.642141 TCAGAAAGAAAAAGGTTGGGCT 58.358 40.909 0.00 0.00 0.00 5.19
853 854 3.636764 TCAGAAAGAAAAAGGTTGGGCTC 59.363 43.478 0.00 0.00 0.00 4.70
854 855 3.384467 CAGAAAGAAAAAGGTTGGGCTCA 59.616 43.478 0.00 0.00 0.00 4.26
855 856 4.039609 CAGAAAGAAAAAGGTTGGGCTCAT 59.960 41.667 0.00 0.00 0.00 2.90
857 858 5.130975 AGAAAGAAAAAGGTTGGGCTCATTT 59.869 36.000 0.00 0.00 0.00 2.32
858 859 4.341366 AGAAAAAGGTTGGGCTCATTTG 57.659 40.909 0.00 0.00 0.00 2.32
859 860 3.071457 AGAAAAAGGTTGGGCTCATTTGG 59.929 43.478 0.00 0.00 0.00 3.28
860 861 2.397044 AAAGGTTGGGCTCATTTGGA 57.603 45.000 0.00 0.00 0.00 3.53
861 862 1.928868 AAGGTTGGGCTCATTTGGAG 58.071 50.000 0.00 0.00 46.93 3.86
871 872 0.749091 TCATTTGGAGCCGCATGGAG 60.749 55.000 0.00 0.00 37.49 3.86
875 876 2.123248 TTGGAGCCGCATGGAGTGAA 62.123 55.000 0.00 0.00 37.49 3.18
888 889 1.550524 GGAGTGAAAAGGCCCATTTCC 59.449 52.381 22.30 15.73 36.23 3.13
946 948 3.013921 AGTTTGCTTTCACCTTCACGAA 58.986 40.909 0.00 0.00 0.00 3.85
962 995 1.272781 CGAATCTCTCTCGCACCAAC 58.727 55.000 0.00 0.00 0.00 3.77
1329 1377 2.043248 GGCGTGGAGAGGACCCTA 60.043 66.667 0.00 0.00 0.00 3.53
1487 1535 2.202810 CGAGAAGCTCTTCCGGGC 60.203 66.667 0.00 0.00 40.33 6.13
1488 1536 2.202810 GAGAAGCTCTTCCGGGCG 60.203 66.667 0.00 0.00 40.33 6.13
1489 1537 4.459089 AGAAGCTCTTCCGGGCGC 62.459 66.667 0.00 0.00 40.33 6.53
1576 1627 3.492311 GAGGAGTGCGGGCTCGATC 62.492 68.421 12.03 3.51 39.00 3.69
1707 1758 1.675310 CGGGATGTTCAGGCAAGCA 60.675 57.895 0.00 0.00 0.00 3.91
1862 1916 2.125350 GCTGCAGAGGAAGTCCGG 60.125 66.667 20.43 0.00 42.08 5.14
1900 1954 3.493213 GGTTGGAACCGGCATACG 58.507 61.111 0.00 0.00 39.66 3.06
2206 2260 5.755375 TCACTCTTTGTGTGAGATTCAAGAC 59.245 40.000 0.00 0.00 46.27 3.01
2344 2399 1.453928 GGGGTAATGGCTCCTGTGC 60.454 63.158 0.00 0.00 0.00 4.57
2359 2415 3.128589 TCCTGTGCAGTGTTCAGTTTTTC 59.871 43.478 12.93 0.00 0.00 2.29
2491 2547 9.107177 GAGATATTTGATATCCTGCAAGTATGG 57.893 37.037 0.00 0.00 42.03 2.74
2917 2973 3.542676 TGTCCTTGACGGTGGCGT 61.543 61.111 0.00 0.00 34.95 5.68
2941 2997 3.031495 CGAAGAGATCGCCGCCTA 58.969 61.111 0.00 0.00 45.89 3.93
3012 3068 1.102809 TGCAATAATCCTGCCCTGCG 61.103 55.000 0.00 0.00 39.13 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.140792 GCCCCTCGGAGCCTATCAA 61.141 63.158 0.00 0.00 0.00 2.57
1 2 2.524394 GCCCCTCGGAGCCTATCA 60.524 66.667 0.00 0.00 0.00 2.15
3 4 2.844839 GTGCCCCTCGGAGCCTAT 60.845 66.667 0.00 0.00 0.00 2.57
9 10 3.467226 GATTCGGTGCCCCTCGGA 61.467 66.667 0.00 0.00 0.00 4.55
10 11 4.891727 CGATTCGGTGCCCCTCGG 62.892 72.222 0.00 0.00 0.00 4.63
12 13 2.202892 GACGATTCGGTGCCCCTC 60.203 66.667 11.29 0.00 0.00 4.30
13 14 2.291043 AAGACGATTCGGTGCCCCT 61.291 57.895 11.29 0.00 0.00 4.79
14 15 2.106683 CAAGACGATTCGGTGCCCC 61.107 63.158 11.29 0.00 0.00 5.80
15 16 1.375523 ACAAGACGATTCGGTGCCC 60.376 57.895 11.29 0.00 0.00 5.36
16 17 1.787847 CACAAGACGATTCGGTGCC 59.212 57.895 11.29 0.00 0.00 5.01
17 18 1.132640 GCACAAGACGATTCGGTGC 59.867 57.895 17.89 17.89 44.83 5.01
18 19 0.670546 AGGCACAAGACGATTCGGTG 60.671 55.000 11.29 9.55 35.92 4.94
19 20 0.892755 TAGGCACAAGACGATTCGGT 59.107 50.000 11.29 0.00 0.00 4.69
20 21 1.134367 TCTAGGCACAAGACGATTCGG 59.866 52.381 11.29 0.00 0.00 4.30
21 22 2.186076 GTCTAGGCACAAGACGATTCG 58.814 52.381 4.14 4.14 34.50 3.34
22 23 3.232213 TGTCTAGGCACAAGACGATTC 57.768 47.619 0.00 0.00 45.19 2.52
23 24 3.195610 TCATGTCTAGGCACAAGACGATT 59.804 43.478 0.00 0.00 45.19 3.34
24 25 2.760650 TCATGTCTAGGCACAAGACGAT 59.239 45.455 0.00 3.45 45.19 3.73
25 26 2.164422 CTCATGTCTAGGCACAAGACGA 59.836 50.000 0.00 0.00 45.19 4.20
26 27 2.164422 TCTCATGTCTAGGCACAAGACG 59.836 50.000 0.00 0.00 45.19 4.18
27 28 3.876274 TCTCATGTCTAGGCACAAGAC 57.124 47.619 0.00 7.48 43.04 3.01
28 29 6.073981 AGATATCTCATGTCTAGGCACAAGA 58.926 40.000 11.68 11.68 0.00 3.02
29 30 6.343716 AGATATCTCATGTCTAGGCACAAG 57.656 41.667 0.00 0.00 0.00 3.16
30 31 7.839680 TTAGATATCTCATGTCTAGGCACAA 57.160 36.000 8.95 0.00 34.98 3.33
31 32 7.839680 TTTAGATATCTCATGTCTAGGCACA 57.160 36.000 8.95 0.00 34.98 4.57
32 33 9.149225 CATTTTAGATATCTCATGTCTAGGCAC 57.851 37.037 8.95 0.00 34.98 5.01
33 34 7.821359 GCATTTTAGATATCTCATGTCTAGGCA 59.179 37.037 8.95 0.00 34.98 4.75
34 35 8.040132 AGCATTTTAGATATCTCATGTCTAGGC 58.960 37.037 8.95 3.40 34.98 3.93
35 36 9.585099 GAGCATTTTAGATATCTCATGTCTAGG 57.415 37.037 8.95 0.00 34.98 3.02
40 41 8.512956 GCATTGAGCATTTTAGATATCTCATGT 58.487 33.333 8.95 2.36 44.79 3.21
41 42 8.897457 GCATTGAGCATTTTAGATATCTCATG 57.103 34.615 8.95 11.10 44.79 3.07
58 59 3.621794 GGATTAATCGTGTGCATTGAGC 58.378 45.455 9.32 0.00 45.96 4.26
59 60 3.846023 GCGGATTAATCGTGTGCATTGAG 60.846 47.826 9.32 0.00 0.00 3.02
60 61 2.031560 GCGGATTAATCGTGTGCATTGA 59.968 45.455 9.32 0.00 0.00 2.57
61 62 2.223226 TGCGGATTAATCGTGTGCATTG 60.223 45.455 15.09 0.00 0.00 2.82
62 63 2.013400 TGCGGATTAATCGTGTGCATT 58.987 42.857 15.09 0.00 0.00 3.56
63 64 1.662517 TGCGGATTAATCGTGTGCAT 58.337 45.000 15.09 0.00 0.00 3.96
64 65 1.443802 TTGCGGATTAATCGTGTGCA 58.556 45.000 15.09 15.09 0.00 4.57
65 66 2.535934 TTTGCGGATTAATCGTGTGC 57.464 45.000 9.32 10.57 0.00 4.57
66 67 2.845967 GCTTTTGCGGATTAATCGTGTG 59.154 45.455 9.32 1.06 34.86 3.82
67 68 3.131240 GCTTTTGCGGATTAATCGTGT 57.869 42.857 9.32 0.00 34.86 4.49
81 82 4.232221 GGTGATTGATGACAGTGCTTTTG 58.768 43.478 0.00 0.00 0.00 2.44
82 83 3.890756 TGGTGATTGATGACAGTGCTTTT 59.109 39.130 0.00 0.00 0.00 2.27
83 84 3.489355 TGGTGATTGATGACAGTGCTTT 58.511 40.909 0.00 0.00 0.00 3.51
84 85 3.144657 TGGTGATTGATGACAGTGCTT 57.855 42.857 0.00 0.00 0.00 3.91
85 86 2.865119 TGGTGATTGATGACAGTGCT 57.135 45.000 0.00 0.00 0.00 4.40
86 87 3.921119 TTTGGTGATTGATGACAGTGC 57.079 42.857 0.00 0.00 0.00 4.40
87 88 4.037803 TGGTTTTGGTGATTGATGACAGTG 59.962 41.667 0.00 0.00 0.00 3.66
88 89 4.037923 GTGGTTTTGGTGATTGATGACAGT 59.962 41.667 0.00 0.00 0.00 3.55
89 90 4.279169 AGTGGTTTTGGTGATTGATGACAG 59.721 41.667 0.00 0.00 0.00 3.51
90 91 4.214310 AGTGGTTTTGGTGATTGATGACA 58.786 39.130 0.00 0.00 0.00 3.58
91 92 4.853924 AGTGGTTTTGGTGATTGATGAC 57.146 40.909 0.00 0.00 0.00 3.06
92 93 5.476599 CCTAAGTGGTTTTGGTGATTGATGA 59.523 40.000 0.00 0.00 0.00 2.92
93 94 5.336690 CCCTAAGTGGTTTTGGTGATTGATG 60.337 44.000 0.00 0.00 30.68 3.07
94 95 4.772100 CCCTAAGTGGTTTTGGTGATTGAT 59.228 41.667 0.00 0.00 30.68 2.57
95 96 4.141135 TCCCTAAGTGGTTTTGGTGATTGA 60.141 41.667 0.00 0.00 30.68 2.57
96 97 4.148838 TCCCTAAGTGGTTTTGGTGATTG 58.851 43.478 0.00 0.00 30.68 2.67
97 98 4.105697 TCTCCCTAAGTGGTTTTGGTGATT 59.894 41.667 0.00 0.00 30.68 2.57
98 99 3.655777 TCTCCCTAAGTGGTTTTGGTGAT 59.344 43.478 0.00 0.00 30.68 3.06
99 100 3.050089 TCTCCCTAAGTGGTTTTGGTGA 58.950 45.455 0.00 0.00 30.68 4.02
100 101 3.502123 TCTCCCTAAGTGGTTTTGGTG 57.498 47.619 0.00 0.00 30.68 4.17
101 102 4.529716 TTTCTCCCTAAGTGGTTTTGGT 57.470 40.909 0.00 0.00 30.68 3.67
102 103 6.405842 GCATATTTCTCCCTAAGTGGTTTTGG 60.406 42.308 0.00 0.00 0.00 3.28
103 104 6.378280 AGCATATTTCTCCCTAAGTGGTTTTG 59.622 38.462 0.00 0.00 0.00 2.44
104 105 6.494059 AGCATATTTCTCCCTAAGTGGTTTT 58.506 36.000 0.00 0.00 0.00 2.43
105 106 6.069381 AGAGCATATTTCTCCCTAAGTGGTTT 60.069 38.462 0.00 0.00 0.00 3.27
106 107 5.430089 AGAGCATATTTCTCCCTAAGTGGTT 59.570 40.000 0.00 0.00 0.00 3.67
107 108 4.971924 AGAGCATATTTCTCCCTAAGTGGT 59.028 41.667 0.00 0.00 0.00 4.16
108 109 5.559148 AGAGCATATTTCTCCCTAAGTGG 57.441 43.478 0.00 0.00 0.00 4.00
109 110 9.868277 CTATAAGAGCATATTTCTCCCTAAGTG 57.132 37.037 0.00 0.00 0.00 3.16
127 128 6.385033 GGCATAAAAAGCATGGCTATAAGAG 58.615 40.000 0.00 0.00 43.58 2.85
128 129 5.243730 GGGCATAAAAAGCATGGCTATAAGA 59.756 40.000 8.51 0.00 45.56 2.10
129 130 5.473039 GGGCATAAAAAGCATGGCTATAAG 58.527 41.667 8.51 0.00 45.56 1.73
130 131 4.283212 GGGGCATAAAAAGCATGGCTATAA 59.717 41.667 8.51 0.00 45.56 0.98
131 132 3.831911 GGGGCATAAAAAGCATGGCTATA 59.168 43.478 8.51 0.00 45.56 1.31
132 133 2.634453 GGGGCATAAAAAGCATGGCTAT 59.366 45.455 8.51 0.00 45.56 2.97
133 134 2.038659 GGGGCATAAAAAGCATGGCTA 58.961 47.619 8.51 0.00 45.56 3.93
134 135 0.832626 GGGGCATAAAAAGCATGGCT 59.167 50.000 8.51 0.00 45.56 4.75
135 136 0.179048 GGGGGCATAAAAAGCATGGC 60.179 55.000 0.00 0.61 45.54 4.40
136 137 1.202330 TGGGGGCATAAAAAGCATGG 58.798 50.000 0.00 0.00 0.00 3.66
137 138 2.546373 CGATGGGGGCATAAAAAGCATG 60.546 50.000 0.00 0.00 0.00 4.06
138 139 1.688197 CGATGGGGGCATAAAAAGCAT 59.312 47.619 0.00 0.00 0.00 3.79
139 140 1.110442 CGATGGGGGCATAAAAAGCA 58.890 50.000 0.00 0.00 0.00 3.91
140 141 1.111277 ACGATGGGGGCATAAAAAGC 58.889 50.000 0.00 0.00 0.00 3.51
141 142 2.738321 GCAACGATGGGGGCATAAAAAG 60.738 50.000 0.00 0.00 0.00 2.27
142 143 1.205893 GCAACGATGGGGGCATAAAAA 59.794 47.619 0.00 0.00 0.00 1.94
143 144 0.820871 GCAACGATGGGGGCATAAAA 59.179 50.000 0.00 0.00 0.00 1.52
144 145 1.040339 GGCAACGATGGGGGCATAAA 61.040 55.000 0.00 0.00 0.00 1.40
145 146 1.454847 GGCAACGATGGGGGCATAA 60.455 57.895 0.00 0.00 0.00 1.90
146 147 2.194597 GGCAACGATGGGGGCATA 59.805 61.111 0.00 0.00 0.00 3.14
147 148 4.059304 TGGCAACGATGGGGGCAT 62.059 61.111 0.00 0.00 42.51 4.40
148 149 4.738998 CTGGCAACGATGGGGGCA 62.739 66.667 0.00 0.00 42.51 5.36
149 150 3.721370 ATCTGGCAACGATGGGGGC 62.721 63.158 0.00 0.00 42.51 5.80
150 151 1.825191 CATCTGGCAACGATGGGGG 60.825 63.158 8.46 0.00 41.08 5.40
151 152 3.831883 CATCTGGCAACGATGGGG 58.168 61.111 8.46 0.00 41.08 4.96
154 155 2.699073 CCTCCATCTGGCAACGATG 58.301 57.895 9.19 9.19 42.97 3.84
161 162 1.099879 GTGTGATGCCTCCATCTGGC 61.100 60.000 5.41 0.00 46.43 4.85
162 163 0.812811 CGTGTGATGCCTCCATCTGG 60.813 60.000 5.41 0.00 46.43 3.86
163 164 0.812811 CCGTGTGATGCCTCCATCTG 60.813 60.000 5.41 0.00 46.43 2.90
164 165 0.977627 TCCGTGTGATGCCTCCATCT 60.978 55.000 5.41 0.00 46.43 2.90
165 166 0.107456 ATCCGTGTGATGCCTCCATC 59.893 55.000 0.00 0.00 46.46 3.51
166 167 0.179037 CATCCGTGTGATGCCTCCAT 60.179 55.000 0.00 0.00 44.16 3.41
167 168 1.221566 CATCCGTGTGATGCCTCCA 59.778 57.895 0.00 0.00 44.16 3.86
168 169 4.131376 CATCCGTGTGATGCCTCC 57.869 61.111 0.00 0.00 44.16 4.30
174 175 2.110578 TGTCTCATCCATCCGTGTGAT 58.889 47.619 0.00 0.00 0.00 3.06
175 176 1.555967 TGTCTCATCCATCCGTGTGA 58.444 50.000 0.00 0.00 0.00 3.58
176 177 2.609427 ATGTCTCATCCATCCGTGTG 57.391 50.000 0.00 0.00 0.00 3.82
177 178 2.036475 GCTATGTCTCATCCATCCGTGT 59.964 50.000 0.00 0.00 0.00 4.49
178 179 2.611473 GGCTATGTCTCATCCATCCGTG 60.611 54.545 0.00 0.00 0.00 4.94
179 180 1.620819 GGCTATGTCTCATCCATCCGT 59.379 52.381 0.00 0.00 0.00 4.69
180 181 1.898472 AGGCTATGTCTCATCCATCCG 59.102 52.381 0.00 0.00 0.00 4.18
181 182 2.902486 TCAGGCTATGTCTCATCCATCC 59.098 50.000 0.00 0.00 0.00 3.51
182 183 3.306641 GGTCAGGCTATGTCTCATCCATC 60.307 52.174 0.00 0.00 0.00 3.51
183 184 2.636893 GGTCAGGCTATGTCTCATCCAT 59.363 50.000 0.00 0.00 0.00 3.41
184 185 2.042464 GGTCAGGCTATGTCTCATCCA 58.958 52.381 0.00 0.00 0.00 3.41
185 186 2.042464 TGGTCAGGCTATGTCTCATCC 58.958 52.381 0.00 0.00 0.00 3.51
186 187 3.323115 TCATGGTCAGGCTATGTCTCATC 59.677 47.826 0.00 0.00 37.35 2.92
187 188 3.311990 TCATGGTCAGGCTATGTCTCAT 58.688 45.455 0.00 0.00 37.35 2.90
188 189 2.750814 TCATGGTCAGGCTATGTCTCA 58.249 47.619 0.00 0.00 37.35 3.27
189 190 3.827008 TTCATGGTCAGGCTATGTCTC 57.173 47.619 0.00 0.00 37.35 3.36
190 191 4.785346 AATTCATGGTCAGGCTATGTCT 57.215 40.909 0.00 0.00 37.35 3.41
191 192 5.237344 GTGTAATTCATGGTCAGGCTATGTC 59.763 44.000 0.00 0.00 37.35 3.06
192 193 5.104360 AGTGTAATTCATGGTCAGGCTATGT 60.104 40.000 0.00 0.00 37.35 2.29
193 194 5.371526 AGTGTAATTCATGGTCAGGCTATG 58.628 41.667 0.00 0.00 37.40 2.23
194 195 5.636903 AGTGTAATTCATGGTCAGGCTAT 57.363 39.130 0.00 0.00 0.00 2.97
195 196 5.661312 ACTAGTGTAATTCATGGTCAGGCTA 59.339 40.000 0.00 0.00 0.00 3.93
196 197 4.471386 ACTAGTGTAATTCATGGTCAGGCT 59.529 41.667 0.00 0.00 0.00 4.58
197 198 4.572389 CACTAGTGTAATTCATGGTCAGGC 59.428 45.833 15.06 0.00 0.00 4.85
198 199 5.118990 CCACTAGTGTAATTCATGGTCAGG 58.881 45.833 21.18 0.00 0.00 3.86
199 200 5.104941 TCCCACTAGTGTAATTCATGGTCAG 60.105 44.000 21.18 1.00 0.00 3.51
200 201 4.780554 TCCCACTAGTGTAATTCATGGTCA 59.219 41.667 21.18 0.00 0.00 4.02
201 202 5.116882 GTCCCACTAGTGTAATTCATGGTC 58.883 45.833 21.18 7.01 0.00 4.02
202 203 4.080526 GGTCCCACTAGTGTAATTCATGGT 60.081 45.833 21.18 0.00 0.00 3.55
203 204 4.164221 AGGTCCCACTAGTGTAATTCATGG 59.836 45.833 21.18 12.33 0.00 3.66
204 205 5.359194 AGGTCCCACTAGTGTAATTCATG 57.641 43.478 21.18 3.53 0.00 3.07
205 206 8.232412 TCTATAGGTCCCACTAGTGTAATTCAT 58.768 37.037 21.18 10.00 0.00 2.57
206 207 7.589081 TCTATAGGTCCCACTAGTGTAATTCA 58.411 38.462 21.18 3.30 0.00 2.57
207 208 8.653036 ATCTATAGGTCCCACTAGTGTAATTC 57.347 38.462 21.18 7.15 0.00 2.17
208 209 9.531158 GTATCTATAGGTCCCACTAGTGTAATT 57.469 37.037 21.18 5.87 0.00 1.40
209 210 8.114743 GGTATCTATAGGTCCCACTAGTGTAAT 58.885 40.741 21.18 7.81 0.00 1.89
210 211 7.296628 AGGTATCTATAGGTCCCACTAGTGTAA 59.703 40.741 21.18 6.25 0.00 2.41
211 212 6.796523 AGGTATCTATAGGTCCCACTAGTGTA 59.203 42.308 21.18 7.32 0.00 2.90
212 213 5.616122 AGGTATCTATAGGTCCCACTAGTGT 59.384 44.000 21.18 5.19 0.00 3.55
213 214 6.142259 AGGTATCTATAGGTCCCACTAGTG 57.858 45.833 16.34 16.34 0.00 2.74
214 215 6.800223 AAGGTATCTATAGGTCCCACTAGT 57.200 41.667 0.00 0.00 0.00 2.57
215 216 6.071278 GCAAAGGTATCTATAGGTCCCACTAG 60.071 46.154 0.00 0.00 0.00 2.57
216 217 5.778750 GCAAAGGTATCTATAGGTCCCACTA 59.221 44.000 0.00 0.00 0.00 2.74
217 218 4.593634 GCAAAGGTATCTATAGGTCCCACT 59.406 45.833 0.00 0.00 0.00 4.00
218 219 4.262938 GGCAAAGGTATCTATAGGTCCCAC 60.263 50.000 0.00 0.00 0.00 4.61
219 220 3.908103 GGCAAAGGTATCTATAGGTCCCA 59.092 47.826 0.00 0.00 0.00 4.37
220 221 4.168883 AGGCAAAGGTATCTATAGGTCCC 58.831 47.826 0.00 0.00 0.00 4.46
221 222 5.280062 GGAAGGCAAAGGTATCTATAGGTCC 60.280 48.000 0.00 0.74 0.00 4.46
222 223 5.544562 AGGAAGGCAAAGGTATCTATAGGTC 59.455 44.000 0.00 0.00 0.00 3.85
223 224 5.477913 AGGAAGGCAAAGGTATCTATAGGT 58.522 41.667 0.00 0.00 0.00 3.08
224 225 6.441088 AAGGAAGGCAAAGGTATCTATAGG 57.559 41.667 0.00 0.00 0.00 2.57
225 226 6.205658 GCAAAGGAAGGCAAAGGTATCTATAG 59.794 42.308 0.00 0.00 0.00 1.31
226 227 6.062095 GCAAAGGAAGGCAAAGGTATCTATA 58.938 40.000 0.00 0.00 0.00 1.31
227 228 4.889995 GCAAAGGAAGGCAAAGGTATCTAT 59.110 41.667 0.00 0.00 0.00 1.98
228 229 4.018415 AGCAAAGGAAGGCAAAGGTATCTA 60.018 41.667 0.00 0.00 0.00 1.98
229 230 3.092301 GCAAAGGAAGGCAAAGGTATCT 58.908 45.455 0.00 0.00 0.00 1.98
230 231 3.092301 AGCAAAGGAAGGCAAAGGTATC 58.908 45.455 0.00 0.00 0.00 2.24
231 232 3.175438 AGCAAAGGAAGGCAAAGGTAT 57.825 42.857 0.00 0.00 0.00 2.73
232 233 2.675658 AGCAAAGGAAGGCAAAGGTA 57.324 45.000 0.00 0.00 0.00 3.08
233 234 1.793414 AAGCAAAGGAAGGCAAAGGT 58.207 45.000 0.00 0.00 0.00 3.50
234 235 2.916702 AAAGCAAAGGAAGGCAAAGG 57.083 45.000 0.00 0.00 0.00 3.11
235 236 3.653344 GGTAAAGCAAAGGAAGGCAAAG 58.347 45.455 0.00 0.00 0.00 2.77
236 237 2.035321 CGGTAAAGCAAAGGAAGGCAAA 59.965 45.455 0.00 0.00 0.00 3.68
237 238 1.611491 CGGTAAAGCAAAGGAAGGCAA 59.389 47.619 0.00 0.00 0.00 4.52
238 239 1.202830 TCGGTAAAGCAAAGGAAGGCA 60.203 47.619 0.00 0.00 0.00 4.75
239 240 1.530323 TCGGTAAAGCAAAGGAAGGC 58.470 50.000 0.00 0.00 0.00 4.35
240 241 2.882137 TGTTCGGTAAAGCAAAGGAAGG 59.118 45.455 0.00 0.00 0.00 3.46
241 242 3.314080 TGTGTTCGGTAAAGCAAAGGAAG 59.686 43.478 0.00 0.00 0.00 3.46
242 243 3.280295 TGTGTTCGGTAAAGCAAAGGAA 58.720 40.909 0.00 0.00 0.00 3.36
243 244 2.920524 TGTGTTCGGTAAAGCAAAGGA 58.079 42.857 0.00 0.00 0.00 3.36
244 245 3.502211 AGATGTGTTCGGTAAAGCAAAGG 59.498 43.478 0.00 0.00 0.00 3.11
245 246 4.749245 AGATGTGTTCGGTAAAGCAAAG 57.251 40.909 0.00 0.00 0.00 2.77
246 247 5.508200 AAAGATGTGTTCGGTAAAGCAAA 57.492 34.783 0.00 0.00 0.00 3.68
247 248 5.066634 TGAAAAGATGTGTTCGGTAAAGCAA 59.933 36.000 0.00 0.00 0.00 3.91
248 249 4.576873 TGAAAAGATGTGTTCGGTAAAGCA 59.423 37.500 0.00 0.00 0.00 3.91
249 250 5.103290 TGAAAAGATGTGTTCGGTAAAGC 57.897 39.130 0.00 0.00 0.00 3.51
250 251 8.574196 AAATTGAAAAGATGTGTTCGGTAAAG 57.426 30.769 0.00 0.00 0.00 1.85
251 252 8.934507 AAAATTGAAAAGATGTGTTCGGTAAA 57.065 26.923 0.00 0.00 0.00 2.01
252 253 7.650104 GGAAAATTGAAAAGATGTGTTCGGTAA 59.350 33.333 0.00 0.00 0.00 2.85
253 254 7.013846 AGGAAAATTGAAAAGATGTGTTCGGTA 59.986 33.333 0.00 0.00 0.00 4.02
254 255 5.983118 GGAAAATTGAAAAGATGTGTTCGGT 59.017 36.000 0.00 0.00 0.00 4.69
255 256 6.215845 AGGAAAATTGAAAAGATGTGTTCGG 58.784 36.000 0.00 0.00 0.00 4.30
256 257 7.059488 CGTAGGAAAATTGAAAAGATGTGTTCG 59.941 37.037 0.00 0.00 0.00 3.95
257 258 8.215899 CGTAGGAAAATTGAAAAGATGTGTTC 57.784 34.615 0.00 0.00 0.00 3.18
277 278 5.912105 ACTCTGGATTAGGAGCCCGTAGG 62.912 56.522 0.00 0.00 39.18 3.18
278 279 1.889829 CTCTGGATTAGGAGCCCGTAG 59.110 57.143 0.00 0.00 0.00 3.51
279 280 1.217183 ACTCTGGATTAGGAGCCCGTA 59.783 52.381 0.00 0.00 33.29 4.02
280 281 0.032017 ACTCTGGATTAGGAGCCCGT 60.032 55.000 0.00 0.00 33.29 5.28
281 282 1.123928 AACTCTGGATTAGGAGCCCG 58.876 55.000 0.00 0.00 33.29 6.13
282 283 4.452825 GTTAAACTCTGGATTAGGAGCCC 58.547 47.826 0.00 0.00 33.29 5.19
283 284 4.080526 TGGTTAAACTCTGGATTAGGAGCC 60.081 45.833 0.00 0.00 33.29 4.70
284 285 5.099042 TGGTTAAACTCTGGATTAGGAGC 57.901 43.478 0.00 0.00 33.29 4.70
285 286 5.675538 CCTGGTTAAACTCTGGATTAGGAG 58.324 45.833 0.00 0.00 35.86 3.69
286 287 4.080526 GCCTGGTTAAACTCTGGATTAGGA 60.081 45.833 0.00 0.00 0.00 2.94
287 288 4.080299 AGCCTGGTTAAACTCTGGATTAGG 60.080 45.833 0.00 0.00 0.00 2.69
288 289 5.104259 AGCCTGGTTAAACTCTGGATTAG 57.896 43.478 0.00 0.00 0.00 1.73
289 290 6.824958 ATAGCCTGGTTAAACTCTGGATTA 57.175 37.500 0.00 0.00 0.00 1.75
290 291 5.717119 ATAGCCTGGTTAAACTCTGGATT 57.283 39.130 0.00 0.00 0.00 3.01
291 292 5.398012 GGAATAGCCTGGTTAAACTCTGGAT 60.398 44.000 0.00 0.00 0.00 3.41
292 293 4.080526 GGAATAGCCTGGTTAAACTCTGGA 60.081 45.833 0.00 0.00 0.00 3.86
293 294 4.200092 GGAATAGCCTGGTTAAACTCTGG 58.800 47.826 0.00 0.00 0.00 3.86
294 295 4.200092 GGGAATAGCCTGGTTAAACTCTG 58.800 47.826 0.00 0.00 36.66 3.35
295 296 3.850173 TGGGAATAGCCTGGTTAAACTCT 59.150 43.478 0.00 0.00 36.66 3.24
296 297 4.200092 CTGGGAATAGCCTGGTTAAACTC 58.800 47.826 0.00 0.00 36.66 3.01
297 298 3.053619 CCTGGGAATAGCCTGGTTAAACT 60.054 47.826 0.00 0.00 36.66 2.66
298 299 3.288092 CCTGGGAATAGCCTGGTTAAAC 58.712 50.000 0.00 0.00 36.66 2.01
299 300 2.243736 CCCTGGGAATAGCCTGGTTAAA 59.756 50.000 7.01 0.00 36.66 1.52
300 301 1.850345 CCCTGGGAATAGCCTGGTTAA 59.150 52.381 7.01 0.00 36.66 2.01
301 302 1.518367 CCCTGGGAATAGCCTGGTTA 58.482 55.000 7.01 0.00 36.66 2.85
302 303 1.289244 CCCCTGGGAATAGCCTGGTT 61.289 60.000 16.20 0.00 37.50 3.67
303 304 1.697754 CCCCTGGGAATAGCCTGGT 60.698 63.158 16.20 0.00 37.50 4.00
304 305 1.289244 AACCCCTGGGAATAGCCTGG 61.289 60.000 16.20 0.00 38.96 4.45
305 306 0.183731 GAACCCCTGGGAATAGCCTG 59.816 60.000 16.20 0.00 38.96 4.85
306 307 0.994050 GGAACCCCTGGGAATAGCCT 60.994 60.000 16.20 0.00 38.96 4.58
307 308 0.994050 AGGAACCCCTGGGAATAGCC 60.994 60.000 16.20 8.07 42.42 3.93
308 309 0.474614 GAGGAACCCCTGGGAATAGC 59.525 60.000 16.20 0.00 44.53 2.97
309 310 1.771255 CAGAGGAACCCCTGGGAATAG 59.229 57.143 16.20 0.00 44.53 1.73
310 311 1.082194 ACAGAGGAACCCCTGGGAATA 59.918 52.381 16.20 0.00 44.53 1.75
311 312 0.178831 ACAGAGGAACCCCTGGGAAT 60.179 55.000 16.20 1.35 44.53 3.01
312 313 0.402861 AACAGAGGAACCCCTGGGAA 60.403 55.000 16.20 0.00 44.53 3.97
313 314 0.402861 AAACAGAGGAACCCCTGGGA 60.403 55.000 16.20 0.00 44.53 4.37
314 315 0.482887 AAAACAGAGGAACCCCTGGG 59.517 55.000 5.50 5.50 44.53 4.45
315 316 1.425448 AGAAAACAGAGGAACCCCTGG 59.575 52.381 7.25 0.00 44.53 4.45
316 317 2.959465 AGAAAACAGAGGAACCCCTG 57.041 50.000 0.89 0.89 44.53 4.45
318 319 2.306219 AGCTAGAAAACAGAGGAACCCC 59.694 50.000 0.00 0.00 0.00 4.95
319 320 3.704800 AGCTAGAAAACAGAGGAACCC 57.295 47.619 0.00 0.00 0.00 4.11
320 321 4.004314 GGAAGCTAGAAAACAGAGGAACC 58.996 47.826 0.00 0.00 0.00 3.62
321 322 4.004314 GGGAAGCTAGAAAACAGAGGAAC 58.996 47.826 0.00 0.00 0.00 3.62
322 323 3.650942 TGGGAAGCTAGAAAACAGAGGAA 59.349 43.478 0.00 0.00 0.00 3.36
323 324 3.008049 GTGGGAAGCTAGAAAACAGAGGA 59.992 47.826 0.00 0.00 0.00 3.71
324 325 3.339141 GTGGGAAGCTAGAAAACAGAGG 58.661 50.000 0.00 0.00 0.00 3.69
325 326 2.996621 CGTGGGAAGCTAGAAAACAGAG 59.003 50.000 0.00 0.00 0.00 3.35
326 327 2.289444 CCGTGGGAAGCTAGAAAACAGA 60.289 50.000 0.00 0.00 0.00 3.41
327 328 2.076863 CCGTGGGAAGCTAGAAAACAG 58.923 52.381 0.00 0.00 0.00 3.16
328 329 1.271163 CCCGTGGGAAGCTAGAAAACA 60.271 52.381 0.00 0.00 37.50 2.83
329 330 1.450025 CCCGTGGGAAGCTAGAAAAC 58.550 55.000 0.00 0.00 37.50 2.43
330 331 3.948735 CCCGTGGGAAGCTAGAAAA 57.051 52.632 0.00 0.00 37.50 2.29
342 343 1.816224 CAAAGTGTATTTCCCCCGTGG 59.184 52.381 0.00 0.00 0.00 4.94
343 344 1.816224 CCAAAGTGTATTTCCCCCGTG 59.184 52.381 0.00 0.00 0.00 4.94
344 345 1.426215 ACCAAAGTGTATTTCCCCCGT 59.574 47.619 0.00 0.00 0.00 5.28
345 346 2.209690 ACCAAAGTGTATTTCCCCCG 57.790 50.000 0.00 0.00 0.00 5.73
346 347 2.829720 GGAACCAAAGTGTATTTCCCCC 59.170 50.000 0.00 0.00 31.19 5.40
347 348 3.509967 CAGGAACCAAAGTGTATTTCCCC 59.490 47.826 0.00 0.00 37.09 4.81
348 349 3.509967 CCAGGAACCAAAGTGTATTTCCC 59.490 47.826 0.00 0.00 37.09 3.97
349 350 4.149598 ACCAGGAACCAAAGTGTATTTCC 58.850 43.478 0.00 0.00 36.71 3.13
350 351 5.068591 ACAACCAGGAACCAAAGTGTATTTC 59.931 40.000 0.00 0.00 0.00 2.17
351 352 4.959839 ACAACCAGGAACCAAAGTGTATTT 59.040 37.500 0.00 0.00 0.00 1.40
352 353 4.542697 ACAACCAGGAACCAAAGTGTATT 58.457 39.130 0.00 0.00 0.00 1.89
353 354 4.178956 ACAACCAGGAACCAAAGTGTAT 57.821 40.909 0.00 0.00 0.00 2.29
354 355 3.655615 ACAACCAGGAACCAAAGTGTA 57.344 42.857 0.00 0.00 0.00 2.90
355 356 2.525105 ACAACCAGGAACCAAAGTGT 57.475 45.000 0.00 0.00 0.00 3.55
356 357 6.882140 TGTATATACAACCAGGAACCAAAGTG 59.118 38.462 13.24 0.00 32.40 3.16
357 358 6.882678 GTGTATATACAACCAGGAACCAAAGT 59.117 38.462 17.07 0.00 38.04 2.66
358 359 6.317893 GGTGTATATACAACCAGGAACCAAAG 59.682 42.308 18.58 0.00 37.94 2.77
359 360 6.181908 GGTGTATATACAACCAGGAACCAAA 58.818 40.000 18.58 0.00 37.94 3.28
360 361 5.747342 GGTGTATATACAACCAGGAACCAA 58.253 41.667 18.58 0.00 37.94 3.67
361 362 5.362105 GGTGTATATACAACCAGGAACCA 57.638 43.478 18.58 0.00 37.94 3.67
443 444 9.382275 AGTGCAAAACAAAATCAAGTTTAATCT 57.618 25.926 0.00 0.00 36.98 2.40
446 447 9.646427 ACTAGTGCAAAACAAAATCAAGTTTAA 57.354 25.926 0.00 0.00 36.98 1.52
448 449 9.083080 GTACTAGTGCAAAACAAAATCAAGTTT 57.917 29.630 5.39 0.00 39.46 2.66
449 450 8.247562 TGTACTAGTGCAAAACAAAATCAAGTT 58.752 29.630 11.58 0.00 0.00 2.66
450 451 7.767261 TGTACTAGTGCAAAACAAAATCAAGT 58.233 30.769 11.58 0.00 0.00 3.16
451 452 8.801715 ATGTACTAGTGCAAAACAAAATCAAG 57.198 30.769 17.90 0.00 0.00 3.02
459 460 9.672086 GTGAAATTTATGTACTAGTGCAAAACA 57.328 29.630 17.90 7.81 0.00 2.83
460 461 8.837059 CGTGAAATTTATGTACTAGTGCAAAAC 58.163 33.333 17.90 1.58 0.00 2.43
461 462 8.775527 TCGTGAAATTTATGTACTAGTGCAAAA 58.224 29.630 17.90 17.27 0.00 2.44
462 463 8.312896 TCGTGAAATTTATGTACTAGTGCAAA 57.687 30.769 17.90 9.00 0.00 3.68
463 464 7.892778 TCGTGAAATTTATGTACTAGTGCAA 57.107 32.000 17.90 1.87 0.00 4.08
464 465 7.892778 TTCGTGAAATTTATGTACTAGTGCA 57.107 32.000 16.34 16.34 0.00 4.57
465 466 9.601971 TTTTTCGTGAAATTTATGTACTAGTGC 57.398 29.630 5.39 4.49 0.00 4.40
532 533 8.450964 CGGTCAAAATAGTGTGAATATTGACTT 58.549 33.333 6.61 0.00 42.77 3.01
533 534 7.822334 TCGGTCAAAATAGTGTGAATATTGACT 59.178 33.333 6.61 2.31 42.77 3.41
534 535 7.970384 TCGGTCAAAATAGTGTGAATATTGAC 58.030 34.615 0.00 0.00 42.56 3.18
535 536 8.554835 TTCGGTCAAAATAGTGTGAATATTGA 57.445 30.769 0.00 0.00 0.00 2.57
536 537 9.619316 TTTTCGGTCAAAATAGTGTGAATATTG 57.381 29.630 0.00 0.00 0.00 1.90
540 541 8.977505 CAAATTTTCGGTCAAAATAGTGTGAAT 58.022 29.630 0.00 0.00 42.86 2.57
541 542 7.976734 ACAAATTTTCGGTCAAAATAGTGTGAA 59.023 29.630 8.21 0.00 42.86 3.18
542 543 7.484975 ACAAATTTTCGGTCAAAATAGTGTGA 58.515 30.769 8.21 0.00 42.86 3.58
543 544 7.647715 AGACAAATTTTCGGTCAAAATAGTGTG 59.352 33.333 9.15 4.71 42.86 3.82
544 545 7.712797 AGACAAATTTTCGGTCAAAATAGTGT 58.287 30.769 9.15 8.54 42.86 3.55
545 546 8.574196 AAGACAAATTTTCGGTCAAAATAGTG 57.426 30.769 9.15 4.43 42.86 2.74
546 547 9.594478 AAAAGACAAATTTTCGGTCAAAATAGT 57.406 25.926 9.15 0.00 42.86 2.12
580 581 9.679661 ACAAAAATAAAATCACCCTTTGACTTT 57.320 25.926 0.00 0.00 37.43 2.66
581 582 9.108284 CACAAAAATAAAATCACCCTTTGACTT 57.892 29.630 0.00 0.00 36.92 3.01
582 583 8.482128 TCACAAAAATAAAATCACCCTTTGACT 58.518 29.630 0.00 0.00 36.92 3.41
583 584 8.655651 TCACAAAAATAAAATCACCCTTTGAC 57.344 30.769 0.00 0.00 36.92 3.18
584 585 9.672673 TTTCACAAAAATAAAATCACCCTTTGA 57.327 25.926 0.00 0.00 39.11 2.69
660 661 9.002080 GCAATTCAACAAAAAGTCAAAAATCTG 57.998 29.630 0.00 0.00 0.00 2.90
661 662 8.949177 AGCAATTCAACAAAAAGTCAAAAATCT 58.051 25.926 0.00 0.00 0.00 2.40
709 710 6.380846 ACGTTTGGTTCCTAGGTGTATATACA 59.619 38.462 11.62 11.62 0.00 2.29
710 711 6.809869 ACGTTTGGTTCCTAGGTGTATATAC 58.190 40.000 9.08 5.89 0.00 1.47
711 712 7.422465 AACGTTTGGTTCCTAGGTGTATATA 57.578 36.000 9.08 0.00 31.79 0.86
712 713 5.945144 ACGTTTGGTTCCTAGGTGTATAT 57.055 39.130 9.08 0.00 0.00 0.86
713 714 5.743636 AACGTTTGGTTCCTAGGTGTATA 57.256 39.130 9.08 0.00 31.79 1.47
714 715 4.628963 AACGTTTGGTTCCTAGGTGTAT 57.371 40.909 9.08 0.00 31.79 2.29
733 734 0.468648 CTATGGGAAGGGACGGGAAC 59.531 60.000 0.00 0.00 0.00 3.62
734 735 0.043637 ACTATGGGAAGGGACGGGAA 59.956 55.000 0.00 0.00 0.00 3.97
735 736 0.043637 AACTATGGGAAGGGACGGGA 59.956 55.000 0.00 0.00 0.00 5.14
736 737 0.916809 AAACTATGGGAAGGGACGGG 59.083 55.000 0.00 0.00 0.00 5.28
737 738 2.801077 AAAACTATGGGAAGGGACGG 57.199 50.000 0.00 0.00 0.00 4.79
738 739 5.433526 TGATAAAAACTATGGGAAGGGACG 58.566 41.667 0.00 0.00 0.00 4.79
739 740 6.096423 GGTTGATAAAAACTATGGGAAGGGAC 59.904 42.308 0.00 0.00 0.00 4.46
740 741 6.011096 AGGTTGATAAAAACTATGGGAAGGGA 60.011 38.462 0.00 0.00 0.00 4.20
741 742 6.194967 AGGTTGATAAAAACTATGGGAAGGG 58.805 40.000 0.00 0.00 0.00 3.95
742 743 7.718334 AAGGTTGATAAAAACTATGGGAAGG 57.282 36.000 0.00 0.00 0.00 3.46
743 744 7.545615 GCAAAGGTTGATAAAAACTATGGGAAG 59.454 37.037 0.00 0.00 0.00 3.46
744 745 7.015682 TGCAAAGGTTGATAAAAACTATGGGAA 59.984 33.333 0.00 0.00 0.00 3.97
745 746 6.495181 TGCAAAGGTTGATAAAAACTATGGGA 59.505 34.615 0.00 0.00 0.00 4.37
746 747 6.589907 GTGCAAAGGTTGATAAAAACTATGGG 59.410 38.462 0.00 0.00 0.00 4.00
747 748 6.589907 GGTGCAAAGGTTGATAAAAACTATGG 59.410 38.462 0.00 0.00 0.00 2.74
748 749 7.151308 TGGTGCAAAGGTTGATAAAAACTATG 58.849 34.615 0.00 0.00 0.00 2.23
749 750 7.296628 TGGTGCAAAGGTTGATAAAAACTAT 57.703 32.000 0.00 0.00 0.00 2.12
750 751 6.716934 TGGTGCAAAGGTTGATAAAAACTA 57.283 33.333 0.00 0.00 0.00 2.24
751 752 5.606348 TGGTGCAAAGGTTGATAAAAACT 57.394 34.783 0.00 0.00 0.00 2.66
752 753 6.670077 TTTGGTGCAAAGGTTGATAAAAAC 57.330 33.333 0.00 0.00 0.00 2.43
753 754 6.261826 CCATTTGGTGCAAAGGTTGATAAAAA 59.738 34.615 0.00 0.00 36.76 1.94
754 755 5.762218 CCATTTGGTGCAAAGGTTGATAAAA 59.238 36.000 0.00 0.00 36.76 1.52
755 756 5.070981 TCCATTTGGTGCAAAGGTTGATAAA 59.929 36.000 0.00 0.00 36.76 1.40
756 757 4.590647 TCCATTTGGTGCAAAGGTTGATAA 59.409 37.500 0.00 0.00 36.76 1.75
757 758 4.155709 TCCATTTGGTGCAAAGGTTGATA 58.844 39.130 0.00 0.00 36.76 2.15
758 759 2.971330 TCCATTTGGTGCAAAGGTTGAT 59.029 40.909 0.00 0.00 36.76 2.57
759 760 2.364970 CTCCATTTGGTGCAAAGGTTGA 59.635 45.455 0.00 0.00 36.76 3.18
760 761 2.758009 CTCCATTTGGTGCAAAGGTTG 58.242 47.619 0.00 0.00 36.76 3.77
769 770 3.592059 CAAATTCAGGCTCCATTTGGTG 58.408 45.455 15.66 0.00 35.23 4.17
770 771 2.568509 CCAAATTCAGGCTCCATTTGGT 59.431 45.455 25.85 0.00 46.50 3.67
771 772 3.255969 CCAAATTCAGGCTCCATTTGG 57.744 47.619 23.23 23.23 46.50 3.28
781 782 2.270297 CTTCCGGCGCCAAATTCAGG 62.270 60.000 28.98 17.71 0.00 3.86
782 783 1.137404 CTTCCGGCGCCAAATTCAG 59.863 57.895 28.98 7.87 0.00 3.02
807 808 0.250124 TCAAATCGAGCCCAACGTGT 60.250 50.000 0.00 0.00 0.00 4.49
834 835 4.607293 ATGAGCCCAACCTTTTTCTTTC 57.393 40.909 0.00 0.00 0.00 2.62
843 844 3.677963 CTCCAAATGAGCCCAACCT 57.322 52.632 0.00 0.00 33.47 3.50
851 852 0.749091 TCCATGCGGCTCCAAATGAG 60.749 55.000 0.00 0.00 44.47 2.90
852 853 0.749091 CTCCATGCGGCTCCAAATGA 60.749 55.000 0.00 0.00 0.00 2.57
853 854 1.033746 ACTCCATGCGGCTCCAAATG 61.034 55.000 0.00 0.00 0.00 2.32
854 855 1.033746 CACTCCATGCGGCTCCAAAT 61.034 55.000 0.00 0.00 0.00 2.32
855 856 1.675310 CACTCCATGCGGCTCCAAA 60.675 57.895 0.00 0.00 0.00 3.28
857 858 2.123248 TTTCACTCCATGCGGCTCCA 62.123 55.000 0.00 0.00 0.00 3.86
858 859 0.960364 TTTTCACTCCATGCGGCTCC 60.960 55.000 0.00 0.00 0.00 4.70
859 860 0.449388 CTTTTCACTCCATGCGGCTC 59.551 55.000 0.00 0.00 0.00 4.70
860 861 0.962356 CCTTTTCACTCCATGCGGCT 60.962 55.000 0.00 0.00 0.00 5.52
861 862 1.508088 CCTTTTCACTCCATGCGGC 59.492 57.895 0.00 0.00 0.00 6.53
862 863 1.508088 GCCTTTTCACTCCATGCGG 59.492 57.895 0.00 0.00 0.00 5.69
863 864 1.508088 GGCCTTTTCACTCCATGCG 59.492 57.895 0.00 0.00 0.00 4.73
864 865 0.899717 TGGGCCTTTTCACTCCATGC 60.900 55.000 4.53 0.00 0.00 4.06
865 866 1.856629 ATGGGCCTTTTCACTCCATG 58.143 50.000 4.53 0.00 36.90 3.66
866 867 2.629017 AATGGGCCTTTTCACTCCAT 57.371 45.000 4.53 0.00 39.63 3.41
867 868 2.247358 GAAATGGGCCTTTTCACTCCA 58.753 47.619 29.81 0.00 34.07 3.86
868 869 1.550524 GGAAATGGGCCTTTTCACTCC 59.449 52.381 33.11 20.54 35.29 3.85
871 872 1.550524 GAGGGAAATGGGCCTTTTCAC 59.449 52.381 33.11 31.66 36.87 3.18
875 876 1.623279 CCATGAGGGAAATGGGCCTTT 60.623 52.381 4.53 0.76 40.86 3.11
946 948 1.513158 CGGTTGGTGCGAGAGAGAT 59.487 57.895 0.00 0.00 0.00 2.75
967 1000 2.046217 GGGGTGAGGAAACGAGCC 60.046 66.667 0.00 0.00 35.28 4.70
1098 1143 2.843912 TAGGGTTCGGGGAGACGACC 62.844 65.000 0.00 0.00 43.37 4.79
1487 1535 1.156645 GCAGGAGCCATACTTGAGCG 61.157 60.000 0.00 0.00 33.58 5.03
1488 1536 2.700329 GCAGGAGCCATACTTGAGC 58.300 57.895 0.00 0.00 33.58 4.26
1574 1625 1.610522 GCTTGGCAATATCGCAAGGAT 59.389 47.619 0.00 0.00 39.25 3.24
1576 1627 1.027357 AGCTTGGCAATATCGCAAGG 58.973 50.000 11.15 0.00 38.47 3.61
1659 1710 0.179084 GCACGCCTATACCTTCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
1862 1916 2.551071 CCAACTTCAGAGACCAGGAACC 60.551 54.545 0.00 0.00 0.00 3.62
1900 1954 1.131126 CAATGTCAACCGATGAGCCAC 59.869 52.381 0.00 0.00 39.19 5.01
2088 2142 0.654683 CTGCATAGTCTTTGGCGAGC 59.345 55.000 0.00 0.00 0.00 5.03
2344 2399 3.062909 TCGTTCCGAAAAACTGAACACTG 59.937 43.478 0.00 0.00 40.86 3.66
2359 2415 3.991773 TCAGTCAAAGGTAATTCGTTCCG 59.008 43.478 0.00 0.00 0.00 4.30
2491 2547 2.406024 CAGATGCAACAATCAAACGTGC 59.594 45.455 0.00 0.00 0.00 5.34
2850 2906 2.162921 CTCAGCCAACGCACTTCACG 62.163 60.000 0.00 0.00 37.52 4.35
3012 3068 1.198637 GGAACATGTGCTGCTGAGTTC 59.801 52.381 3.21 14.66 35.77 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.