Multiple sequence alignment - TraesCS7D01G202900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G202900 chr7D 100.000 4002 0 0 1 4002 161298588 161294587 0.000000e+00 7391.0
1 TraesCS7D01G202900 chr7D 100.000 3308 0 0 4339 7646 161294250 161290943 0.000000e+00 6109.0
2 TraesCS7D01G202900 chr7D 83.961 1727 199 45 4991 6660 161395372 161393667 0.000000e+00 1583.0
3 TraesCS7D01G202900 chr7D 87.026 817 94 9 2777 3586 161397147 161396336 0.000000e+00 911.0
4 TraesCS7D01G202900 chr7D 86.353 447 42 13 7211 7646 124874256 124874694 3.230000e-128 470.0
5 TraesCS7D01G202900 chr7D 79.558 543 84 17 2624 3163 161404707 161404189 5.640000e-96 363.0
6 TraesCS7D01G202900 chr7D 76.626 492 93 13 6189 6661 161401994 161401506 1.270000e-62 252.0
7 TraesCS7D01G202900 chr7D 95.370 108 5 0 1372 1479 572724528 572724421 1.020000e-38 172.0
8 TraesCS7D01G202900 chr7A 96.108 2852 60 13 4373 7214 162534609 162531799 0.000000e+00 4604.0
9 TraesCS7D01G202900 chr7A 98.322 1192 20 0 2754 3945 162535798 162534607 0.000000e+00 2091.0
10 TraesCS7D01G202900 chr7A 94.712 1286 46 6 1478 2756 162537149 162535879 0.000000e+00 1978.0
11 TraesCS7D01G202900 chr7A 83.479 1719 220 35 4990 6660 162582596 162580894 0.000000e+00 1543.0
12 TraesCS7D01G202900 chr7A 87.192 1218 110 20 61 1262 162538502 162537315 0.000000e+00 1343.0
13 TraesCS7D01G202900 chr7A 85.832 847 108 10 2747 3586 162584396 162583555 0.000000e+00 889.0
14 TraesCS7D01G202900 chr7A 80.917 807 139 12 2772 3576 162594491 162593698 2.340000e-174 623.0
15 TraesCS7D01G202900 chr7A 91.116 439 36 3 7211 7646 162531621 162531183 6.610000e-165 592.0
16 TraesCS7D01G202900 chr7A 75.417 1139 211 44 4991 6088 162593160 162592050 8.920000e-134 488.0
17 TraesCS7D01G202900 chr7A 82.997 347 45 12 3609 3952 162583462 162583127 1.250000e-77 302.0
18 TraesCS7D01G202900 chr7B 97.345 2674 55 9 4550 7217 123441887 123439224 0.000000e+00 4530.0
19 TraesCS7D01G202900 chr7B 96.327 2532 61 8 1478 4002 123444916 123442410 0.000000e+00 4132.0
20 TraesCS7D01G202900 chr7B 81.443 2010 264 60 4991 6911 123660294 123658305 0.000000e+00 1544.0
21 TraesCS7D01G202900 chr7B 95.008 601 23 3 775 1368 123445520 123444920 0.000000e+00 937.0
22 TraesCS7D01G202900 chr7B 86.291 817 85 15 2777 3586 123662054 123661258 0.000000e+00 863.0
23 TraesCS7D01G202900 chr7B 79.476 955 158 24 2624 3576 123670311 123669393 1.800000e-180 643.0
24 TraesCS7D01G202900 chr7B 92.711 439 29 3 7211 7646 123439047 123438609 1.400000e-176 630.0
25 TraesCS7D01G202900 chr7B 85.985 528 70 4 146 671 123481545 123481020 5.180000e-156 562.0
26 TraesCS7D01G202900 chr7B 98.611 216 3 0 4339 4554 123442356 123442141 4.330000e-102 383.0
27 TraesCS7D01G202900 chr7B 83.333 348 43 14 3609 3952 123661178 123660842 2.680000e-79 307.0
28 TraesCS7D01G202900 chr4B 87.982 441 44 7 7215 7646 260074456 260074896 5.290000e-141 512.0
29 TraesCS7D01G202900 chr5B 87.273 440 43 6 7211 7646 440209237 440208807 2.480000e-134 490.0
30 TraesCS7D01G202900 chr1A 86.517 445 49 9 7211 7646 63873571 63874013 5.370000e-131 479.0
31 TraesCS7D01G202900 chr1A 95.370 108 5 0 1372 1479 19894866 19894973 1.020000e-38 172.0
32 TraesCS7D01G202900 chr4D 86.775 431 48 6 7211 7633 259882674 259883103 8.980000e-129 472.0
33 TraesCS7D01G202900 chr1D 85.491 448 50 9 7211 7646 25871700 25871256 3.250000e-123 453.0
34 TraesCS7D01G202900 chr3D 85.088 456 46 14 7211 7646 505572042 505572495 5.440000e-121 446.0
35 TraesCS7D01G202900 chr3D 92.562 121 9 0 1368 1488 76937402 76937282 2.840000e-39 174.0
36 TraesCS7D01G202900 chr3B 98.165 109 2 0 1371 1479 4149875 4149983 2.820000e-44 191.0
37 TraesCS7D01G202900 chr3B 98.165 109 2 0 1371 1479 4967901 4968009 2.820000e-44 191.0
38 TraesCS7D01G202900 chr2D 95.413 109 5 0 1371 1479 194731000 194731108 2.840000e-39 174.0
39 TraesCS7D01G202900 chr1B 95.370 108 5 0 1372 1479 484884883 484884990 1.020000e-38 172.0
40 TraesCS7D01G202900 chr5A 93.805 113 7 0 1371 1483 512233577 512233465 3.670000e-38 171.0
41 TraesCS7D01G202900 chr6B 93.805 113 4 3 1370 1481 720748861 720748971 4.750000e-37 167.0
42 TraesCS7D01G202900 chr3A 97.727 44 1 0 1 44 32225677 32225720 8.230000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G202900 chr7D 161290943 161298588 7645 True 6750.000000 7391 100.000000 1 7646 2 chr7D.!!$R2 7645
1 TraesCS7D01G202900 chr7D 161393667 161397147 3480 True 1247.000000 1583 85.493500 2777 6660 2 chr7D.!!$R3 3883
2 TraesCS7D01G202900 chr7D 161401506 161404707 3201 True 307.500000 363 78.092000 2624 6661 2 chr7D.!!$R4 4037
3 TraesCS7D01G202900 chr7A 162531183 162538502 7319 True 2121.600000 4604 93.490000 61 7646 5 chr7A.!!$R1 7585
4 TraesCS7D01G202900 chr7A 162580894 162584396 3502 True 911.333333 1543 84.102667 2747 6660 3 chr7A.!!$R2 3913
5 TraesCS7D01G202900 chr7A 162592050 162594491 2441 True 555.500000 623 78.167000 2772 6088 2 chr7A.!!$R3 3316
6 TraesCS7D01G202900 chr7B 123438609 123445520 6911 True 2122.400000 4530 96.000400 775 7646 5 chr7B.!!$R3 6871
7 TraesCS7D01G202900 chr7B 123658305 123662054 3749 True 904.666667 1544 83.689000 2777 6911 3 chr7B.!!$R4 4134
8 TraesCS7D01G202900 chr7B 123669393 123670311 918 True 643.000000 643 79.476000 2624 3576 1 chr7B.!!$R2 952
9 TraesCS7D01G202900 chr7B 123481020 123481545 525 True 562.000000 562 85.985000 146 671 1 chr7B.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.032416 AGTGTGGGCCGTATACCTCT 60.032 55.000 0.00 0.0 0.00 3.69 F
586 596 0.036858 ACTGAGGAAGAAGAAGGCGC 60.037 55.000 0.00 0.0 0.00 6.53 F
665 675 1.602323 TGCTAAGGCAAACCGTGGG 60.602 57.895 0.00 0.0 46.36 4.61 F
968 985 2.017049 TCGATCGAGCTCATCAGTCAA 58.983 47.619 15.15 0.0 0.00 3.18 F
2239 2317 1.919918 TTGTGTTGGCTTTTTGCTCG 58.080 45.000 0.00 0.0 42.39 5.03 F
2674 2754 2.159572 CGATTTACTTGGTTGCTTCCCG 60.160 50.000 0.00 0.0 0.00 5.14 F
3520 3696 0.947244 CACTGAAGCCGCTGTTCTTT 59.053 50.000 0.00 0.0 0.00 2.52 F
3999 4357 1.308998 CCCGTTATTCAGATGGGCAC 58.691 55.000 0.00 0.0 36.57 5.01 F
4736 5372 3.812609 TGTGTCTGAGAAATAAAGCGCAA 59.187 39.130 11.47 0.0 0.00 4.85 F
6594 7360 0.671781 CAGCGGTTCAGGAAGTGGAG 60.672 60.000 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 1074 0.611340 ACGTCCACCTGGTACTCCTC 60.611 60.000 0.00 0.0 36.34 3.71 R
1520 1594 1.737838 TTAGCTGCATTCCCGTCAAG 58.262 50.000 1.02 0.0 0.00 3.02 R
2197 2275 1.818642 CCTGAGCAGAAACCCTCTTG 58.181 55.000 0.00 0.0 29.07 3.02 R
2321 2399 2.624838 ACAAAGGTTGCATGGTCTTCAG 59.375 45.455 0.00 0.0 0.00 3.02 R
3380 3556 0.541863 ATCCCTGAATCGCTCGGTTT 59.458 50.000 0.00 0.0 0.00 3.27 R
4364 4722 3.073678 TGTGAATCTCAAACCATCACCG 58.926 45.455 0.00 0.0 39.64 4.94 R
4995 5669 1.422531 TTGCCAATGCCAACTCCTTT 58.577 45.000 0.00 0.0 36.33 3.11 R
5584 6295 0.441533 CTGCAAGATGCTGTGACGAC 59.558 55.000 3.78 0.0 45.31 4.34 R
6602 7368 2.368221 AGATAGAGCTTCTGCCCATCAC 59.632 50.000 0.00 0.0 40.80 3.06 R
7483 8476 3.261580 GCACTAAAATTTGCCATGGTCC 58.738 45.455 14.67 0.0 32.21 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.896383 TTTGCTATGGTATAAAGGCTGATTT 57.104 32.000 0.00 0.00 0.00 2.17
25 26 6.882610 TGCTATGGTATAAAGGCTGATTTG 57.117 37.500 0.00 0.00 0.00 2.32
26 27 6.364701 TGCTATGGTATAAAGGCTGATTTGT 58.635 36.000 0.00 0.00 0.00 2.83
27 28 7.513856 TGCTATGGTATAAAGGCTGATTTGTA 58.486 34.615 0.00 0.00 0.00 2.41
28 29 7.996066 TGCTATGGTATAAAGGCTGATTTGTAA 59.004 33.333 0.00 0.00 0.00 2.41
29 30 8.846211 GCTATGGTATAAAGGCTGATTTGTAAA 58.154 33.333 0.00 0.00 0.00 2.01
32 33 8.232913 TGGTATAAAGGCTGATTTGTAAATCC 57.767 34.615 13.19 1.31 43.19 3.01
33 34 7.836685 TGGTATAAAGGCTGATTTGTAAATCCA 59.163 33.333 13.19 3.26 43.19 3.41
34 35 8.352942 GGTATAAAGGCTGATTTGTAAATCCAG 58.647 37.037 13.19 11.39 43.19 3.86
35 36 7.961326 ATAAAGGCTGATTTGTAAATCCAGT 57.039 32.000 13.19 0.00 43.19 4.00
36 37 5.649782 AAGGCTGATTTGTAAATCCAGTG 57.350 39.130 13.19 4.48 43.19 3.66
37 38 4.666512 AGGCTGATTTGTAAATCCAGTGT 58.333 39.130 13.19 2.93 43.19 3.55
38 39 4.460382 AGGCTGATTTGTAAATCCAGTGTG 59.540 41.667 13.19 1.27 43.19 3.82
39 40 4.380867 GGCTGATTTGTAAATCCAGTGTGG 60.381 45.833 13.19 0.00 43.19 4.17
40 41 4.380867 GCTGATTTGTAAATCCAGTGTGGG 60.381 45.833 13.19 0.00 43.19 4.61
41 42 3.509575 TGATTTGTAAATCCAGTGTGGGC 59.490 43.478 13.19 0.00 43.19 5.36
42 43 1.917872 TTGTAAATCCAGTGTGGGCC 58.082 50.000 0.00 0.00 38.32 5.80
43 44 0.322098 TGTAAATCCAGTGTGGGCCG 60.322 55.000 0.00 0.00 38.32 6.13
44 45 0.322187 GTAAATCCAGTGTGGGCCGT 60.322 55.000 0.00 0.00 38.32 5.68
45 46 1.065998 GTAAATCCAGTGTGGGCCGTA 60.066 52.381 0.00 0.00 38.32 4.02
46 47 0.623723 AAATCCAGTGTGGGCCGTAT 59.376 50.000 0.00 0.00 38.32 3.06
47 48 1.502690 AATCCAGTGTGGGCCGTATA 58.497 50.000 0.00 0.00 38.32 1.47
48 49 0.756903 ATCCAGTGTGGGCCGTATAC 59.243 55.000 0.00 0.00 38.32 1.47
49 50 1.145377 CCAGTGTGGGCCGTATACC 59.855 63.158 0.00 0.00 32.67 2.73
50 51 1.335132 CCAGTGTGGGCCGTATACCT 61.335 60.000 0.00 0.00 32.67 3.08
51 52 0.104304 CAGTGTGGGCCGTATACCTC 59.896 60.000 0.00 0.00 0.00 3.85
52 53 0.032416 AGTGTGGGCCGTATACCTCT 60.032 55.000 0.00 0.00 0.00 3.69
53 54 0.104304 GTGTGGGCCGTATACCTCTG 59.896 60.000 0.00 0.00 0.00 3.35
54 55 1.069258 GTGGGCCGTATACCTCTGC 59.931 63.158 0.00 0.00 0.00 4.26
55 56 2.138179 TGGGCCGTATACCTCTGCC 61.138 63.158 0.00 10.40 41.42 4.85
56 57 2.138179 GGGCCGTATACCTCTGCCA 61.138 63.158 17.22 0.00 43.96 4.92
57 58 1.069258 GGCCGTATACCTCTGCCAC 59.931 63.158 12.85 0.00 41.76 5.01
58 59 1.400530 GGCCGTATACCTCTGCCACT 61.401 60.000 12.85 0.00 41.76 4.00
59 60 0.249489 GCCGTATACCTCTGCCACTG 60.249 60.000 0.00 0.00 0.00 3.66
69 70 3.914579 CTGCCACTGCTCCCCACAG 62.915 68.421 0.00 0.00 41.08 3.66
73 74 1.681666 CACTGCTCCCCACAGATGT 59.318 57.895 0.00 0.00 38.55 3.06
81 82 0.392998 CCCCACAGATGTCGAAAGGG 60.393 60.000 0.00 0.00 34.58 3.95
83 84 1.271379 CCCACAGATGTCGAAAGGGTT 60.271 52.381 0.00 0.00 0.00 4.11
85 86 2.884639 CCACAGATGTCGAAAGGGTTTT 59.115 45.455 0.00 0.00 0.00 2.43
86 87 4.069304 CCACAGATGTCGAAAGGGTTTTA 58.931 43.478 0.00 0.00 0.00 1.52
90 91 6.149474 CACAGATGTCGAAAGGGTTTTATCTT 59.851 38.462 0.00 0.00 0.00 2.40
100 101 8.062448 CGAAAGGGTTTTATCTTCTTTATAGCG 58.938 37.037 0.00 0.00 0.00 4.26
105 106 7.444487 GGGTTTTATCTTCTTTATAGCGTGGAT 59.556 37.037 0.00 0.00 0.00 3.41
108 109 9.706691 TTTTATCTTCTTTATAGCGTGGATAGG 57.293 33.333 0.00 0.00 0.00 2.57
122 123 5.220605 GCGTGGATAGGTGAAATAGTGTTTC 60.221 44.000 5.47 5.47 0.00 2.78
125 126 5.188163 TGGATAGGTGAAATAGTGTTTCGGA 59.812 40.000 7.72 0.00 0.00 4.55
129 130 5.420409 AGGTGAAATAGTGTTTCGGATCTC 58.580 41.667 7.72 0.00 0.00 2.75
261 265 3.937706 AGGCAAATCGAAGTGATTCTCTG 59.062 43.478 3.05 0.00 46.65 3.35
328 333 4.339814 GTGAAAACCCACTAACCAATGACA 59.660 41.667 0.00 0.00 34.38 3.58
329 334 4.956700 TGAAAACCCACTAACCAATGACAA 59.043 37.500 0.00 0.00 0.00 3.18
330 335 5.600484 TGAAAACCCACTAACCAATGACAAT 59.400 36.000 0.00 0.00 0.00 2.71
332 337 4.380843 ACCCACTAACCAATGACAATCA 57.619 40.909 0.00 0.00 0.00 2.57
347 352 2.379907 ACAATCAGAATGGACAACCCCT 59.620 45.455 0.00 0.00 36.16 4.79
354 359 2.204090 GGACAACCCCTCCCCTGA 60.204 66.667 0.00 0.00 0.00 3.86
371 376 4.657824 ACCACCCTCGTCAACGCG 62.658 66.667 3.53 3.53 39.60 6.01
376 382 2.202492 CCTCGTCAACGCGGAGAG 60.202 66.667 12.47 11.00 46.30 3.20
380 386 1.868251 CGTCAACGCGGAGAGCTAC 60.868 63.158 12.47 0.00 45.59 3.58
401 407 1.262640 ACCGACCGCCAATTCTAGGT 61.263 55.000 0.00 0.00 40.11 3.08
435 441 4.403137 GCGACGCCAATGCAAGCA 62.403 61.111 9.14 0.00 37.32 3.91
461 471 2.441164 AGAGCTCCTCGATGCCGT 60.441 61.111 10.93 0.00 35.36 5.68
523 533 3.712907 GCCCTGACTACCGGCCAA 61.713 66.667 0.00 0.00 36.63 4.52
524 534 3.043999 GCCCTGACTACCGGCCAAT 62.044 63.158 0.00 0.00 36.63 3.16
525 535 1.153168 CCCTGACTACCGGCCAATG 60.153 63.158 0.00 0.00 0.00 2.82
530 540 1.306654 ACTACCGGCCAATGGGAGA 60.307 57.895 13.98 0.00 40.13 3.71
531 541 1.338136 ACTACCGGCCAATGGGAGAG 61.338 60.000 13.98 6.90 40.13 3.20
533 543 4.883354 CCGGCCAATGGGAGAGCC 62.883 72.222 2.24 0.00 42.18 4.70
539 549 1.895707 CAATGGGAGAGCCGGCATC 60.896 63.158 31.54 25.09 33.83 3.91
561 571 2.030562 AAGGCGGTGGACAAGTCG 59.969 61.111 0.00 0.00 0.00 4.18
570 580 1.374758 GGACAAGTCGGAGGCACTG 60.375 63.158 0.00 0.00 41.55 3.66
581 591 1.625818 GGAGGCACTGAGGAAGAAGAA 59.374 52.381 0.00 0.00 41.55 2.52
582 592 2.354604 GGAGGCACTGAGGAAGAAGAAG 60.355 54.545 0.00 0.00 41.55 2.85
583 593 1.627834 AGGCACTGAGGAAGAAGAAGG 59.372 52.381 0.00 0.00 37.18 3.46
584 594 1.447945 GCACTGAGGAAGAAGAAGGC 58.552 55.000 0.00 0.00 0.00 4.35
586 596 0.036858 ACTGAGGAAGAAGAAGGCGC 60.037 55.000 0.00 0.00 0.00 6.53
588 598 1.811679 GAGGAAGAAGAAGGCGCCG 60.812 63.158 23.20 0.00 0.00 6.46
590 600 2.435059 GAAGAAGAAGGCGCCGCT 60.435 61.111 23.20 19.99 0.00 5.52
591 601 2.032681 AAGAAGAAGGCGCCGCTT 59.967 55.556 29.50 29.50 0.00 4.68
592 602 2.245714 GAAGAAGAAGGCGCCGCTTG 62.246 60.000 32.65 0.00 0.00 4.01
593 603 2.731691 AAGAAGAAGGCGCCGCTTGA 62.732 55.000 32.65 0.00 0.00 3.02
594 604 3.028366 GAAGAAGGCGCCGCTTGAC 62.028 63.158 32.65 19.95 0.00 3.18
606 616 4.410400 CTTGACCCACCGCCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
611 621 4.060667 CCCACCGCCTCCCCAAAT 62.061 66.667 0.00 0.00 0.00 2.32
612 622 2.440247 CCACCGCCTCCCCAAATC 60.440 66.667 0.00 0.00 0.00 2.17
613 623 2.677228 CACCGCCTCCCCAAATCT 59.323 61.111 0.00 0.00 0.00 2.40
614 624 1.750399 CACCGCCTCCCCAAATCTG 60.750 63.158 0.00 0.00 0.00 2.90
618 628 2.677228 CCTCCCCAAATCTGCGGT 59.323 61.111 0.00 0.00 0.00 5.68
646 656 3.479269 GCCGACGCTTTCCACTCG 61.479 66.667 0.00 0.00 0.00 4.18
648 658 2.372690 CCGACGCTTTCCACTCGTG 61.373 63.158 0.00 0.00 36.50 4.35
649 659 2.853914 GACGCTTTCCACTCGTGC 59.146 61.111 0.00 0.00 36.50 5.34
665 675 1.602323 TGCTAAGGCAAACCGTGGG 60.602 57.895 0.00 0.00 46.36 4.61
687 697 8.308207 GTGGGTTATACAATAAAAAGGCAGAAA 58.692 33.333 0.00 0.00 0.00 2.52
701 711 3.029320 GCAGAAAAATGCATCACACCA 57.971 42.857 0.00 0.00 45.77 4.17
703 713 3.369756 GCAGAAAAATGCATCACACCATG 59.630 43.478 0.00 0.00 45.77 3.66
720 730 7.149569 ACACCATGTGATAAATCTTGTCTTG 57.850 36.000 0.49 0.00 36.96 3.02
721 731 6.151648 ACACCATGTGATAAATCTTGTCTTGG 59.848 38.462 0.49 0.00 36.96 3.61
722 732 5.126061 ACCATGTGATAAATCTTGTCTTGGC 59.874 40.000 0.00 0.00 0.00 4.52
732 742 5.702349 ATCTTGTCTTGGCAAAGAGAAAG 57.298 39.130 13.94 14.95 43.04 2.62
736 746 4.016444 TGTCTTGGCAAAGAGAAAGTGTT 58.984 39.130 2.97 0.00 43.13 3.32
741 751 5.398603 TGGCAAAGAGAAAGTGTTTCAAA 57.601 34.783 2.44 0.00 42.10 2.69
744 754 6.878389 TGGCAAAGAGAAAGTGTTTCAAAAAT 59.122 30.769 2.44 0.00 42.10 1.82
746 756 6.684131 GCAAAGAGAAAGTGTTTCAAAAATGC 59.316 34.615 2.44 2.94 42.10 3.56
770 780 5.836705 TCTTATATGATGAGAGGGAGGGAG 58.163 45.833 0.00 0.00 0.00 4.30
773 783 5.623551 ATATGATGAGAGGGAGGGAGTAA 57.376 43.478 0.00 0.00 0.00 2.24
780 790 5.101529 TGAGAGGGAGGGAGTAATTTTCTT 58.898 41.667 0.00 0.00 0.00 2.52
781 791 6.269194 TGAGAGGGAGGGAGTAATTTTCTTA 58.731 40.000 0.00 0.00 0.00 2.10
806 817 5.722263 TGGCACATCATTCCTATGTTTTTG 58.278 37.500 0.00 0.00 35.39 2.44
807 818 5.245751 TGGCACATCATTCCTATGTTTTTGT 59.754 36.000 0.00 0.00 35.39 2.83
808 819 5.577945 GGCACATCATTCCTATGTTTTTGTG 59.422 40.000 0.00 0.00 35.39 3.33
809 820 6.158598 GCACATCATTCCTATGTTTTTGTGT 58.841 36.000 0.00 0.00 35.39 3.72
814 825 7.595819 TCATTCCTATGTTTTTGTGTTTCCT 57.404 32.000 0.00 0.00 33.34 3.36
815 826 7.657336 TCATTCCTATGTTTTTGTGTTTCCTC 58.343 34.615 0.00 0.00 33.34 3.71
816 827 7.505585 TCATTCCTATGTTTTTGTGTTTCCTCT 59.494 33.333 0.00 0.00 33.34 3.69
818 829 7.038154 TCCTATGTTTTTGTGTTTCCTCTTG 57.962 36.000 0.00 0.00 0.00 3.02
904 921 2.159057 TCGGACTGATCCATGTGACATG 60.159 50.000 18.28 18.28 46.67 3.21
968 985 2.017049 TCGATCGAGCTCATCAGTCAA 58.983 47.619 15.15 0.00 0.00 3.18
1057 1074 2.042435 AGGAAGAGGAGGCGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
1245 1262 4.237207 GATCCTCCGCCCGTTCCC 62.237 72.222 0.00 0.00 0.00 3.97
1266 1283 3.753272 CCTCTTCTTCCGCAAATTCTTCA 59.247 43.478 0.00 0.00 0.00 3.02
1368 1441 7.475771 TTTTCTCATGCATGTTTAAACCAAC 57.524 32.000 25.43 5.41 0.00 3.77
1369 1442 5.781210 TCTCATGCATGTTTAAACCAACA 57.219 34.783 25.43 10.62 40.92 3.33
1371 1444 5.301551 TCTCATGCATGTTTAAACCAACACT 59.698 36.000 25.43 0.00 39.48 3.55
1372 1445 6.488344 TCTCATGCATGTTTAAACCAACACTA 59.512 34.615 25.43 0.15 39.48 2.74
1373 1446 6.442952 TCATGCATGTTTAAACCAACACTAC 58.557 36.000 25.43 0.00 39.48 2.73
1374 1447 6.264292 TCATGCATGTTTAAACCAACACTACT 59.736 34.615 25.43 0.00 39.48 2.57
1375 1448 6.067263 TGCATGTTTAAACCAACACTACTC 57.933 37.500 15.59 0.00 39.48 2.59
1376 1449 5.009210 TGCATGTTTAAACCAACACTACTCC 59.991 40.000 15.59 0.00 39.48 3.85
1377 1450 5.564063 GCATGTTTAAACCAACACTACTCCC 60.564 44.000 15.59 0.00 39.48 4.30
1378 1451 5.376756 TGTTTAAACCAACACTACTCCCT 57.623 39.130 15.59 0.00 31.48 4.20
1379 1452 5.370679 TGTTTAAACCAACACTACTCCCTC 58.629 41.667 15.59 0.00 31.48 4.30
1380 1453 4.628963 TTAAACCAACACTACTCCCTCC 57.371 45.455 0.00 0.00 0.00 4.30
1381 1454 2.112279 AACCAACACTACTCCCTCCA 57.888 50.000 0.00 0.00 0.00 3.86
1382 1455 2.344093 ACCAACACTACTCCCTCCAT 57.656 50.000 0.00 0.00 0.00 3.41
1383 1456 2.632537 ACCAACACTACTCCCTCCATT 58.367 47.619 0.00 0.00 0.00 3.16
1384 1457 2.572104 ACCAACACTACTCCCTCCATTC 59.428 50.000 0.00 0.00 0.00 2.67
1385 1458 2.571653 CCAACACTACTCCCTCCATTCA 59.428 50.000 0.00 0.00 0.00 2.57
1386 1459 3.600388 CAACACTACTCCCTCCATTCAC 58.400 50.000 0.00 0.00 0.00 3.18
1387 1460 3.191888 ACACTACTCCCTCCATTCACT 57.808 47.619 0.00 0.00 0.00 3.41
1388 1461 3.521727 ACACTACTCCCTCCATTCACTT 58.478 45.455 0.00 0.00 0.00 3.16
1389 1462 3.910627 ACACTACTCCCTCCATTCACTTT 59.089 43.478 0.00 0.00 0.00 2.66
1390 1463 4.351111 ACACTACTCCCTCCATTCACTTTT 59.649 41.667 0.00 0.00 0.00 2.27
1391 1464 4.697352 CACTACTCCCTCCATTCACTTTTG 59.303 45.833 0.00 0.00 0.00 2.44
1392 1465 3.884037 ACTCCCTCCATTCACTTTTGT 57.116 42.857 0.00 0.00 0.00 2.83
1393 1466 4.993705 ACTCCCTCCATTCACTTTTGTA 57.006 40.909 0.00 0.00 0.00 2.41
1394 1467 5.319043 ACTCCCTCCATTCACTTTTGTAA 57.681 39.130 0.00 0.00 0.00 2.41
1395 1468 5.316987 ACTCCCTCCATTCACTTTTGTAAG 58.683 41.667 0.00 0.00 37.40 2.34
1396 1469 5.073144 ACTCCCTCCATTCACTTTTGTAAGA 59.927 40.000 0.00 0.00 35.30 2.10
1397 1470 5.313712 TCCCTCCATTCACTTTTGTAAGAC 58.686 41.667 0.00 0.00 35.30 3.01
1398 1471 4.459337 CCCTCCATTCACTTTTGTAAGACC 59.541 45.833 0.00 0.00 35.30 3.85
1399 1472 4.154195 CCTCCATTCACTTTTGTAAGACCG 59.846 45.833 0.00 0.00 35.30 4.79
1400 1473 4.710324 TCCATTCACTTTTGTAAGACCGT 58.290 39.130 0.00 0.00 35.30 4.83
1401 1474 5.127491 TCCATTCACTTTTGTAAGACCGTT 58.873 37.500 0.00 0.00 35.30 4.44
1402 1475 5.591067 TCCATTCACTTTTGTAAGACCGTTT 59.409 36.000 0.00 0.00 35.30 3.60
1403 1476 6.766944 TCCATTCACTTTTGTAAGACCGTTTA 59.233 34.615 0.00 0.00 35.30 2.01
1404 1477 7.041644 TCCATTCACTTTTGTAAGACCGTTTAG 60.042 37.037 0.00 0.00 35.30 1.85
1405 1478 7.041644 CCATTCACTTTTGTAAGACCGTTTAGA 60.042 37.037 0.00 0.00 35.30 2.10
1406 1479 6.833342 TCACTTTTGTAAGACCGTTTAGAC 57.167 37.500 0.00 0.00 35.30 2.59
1407 1480 6.339730 TCACTTTTGTAAGACCGTTTAGACA 58.660 36.000 0.00 0.00 35.30 3.41
1408 1481 6.987992 TCACTTTTGTAAGACCGTTTAGACAT 59.012 34.615 0.00 0.00 35.30 3.06
1409 1482 7.496591 TCACTTTTGTAAGACCGTTTAGACATT 59.503 33.333 0.00 0.00 35.30 2.71
1410 1483 8.126700 CACTTTTGTAAGACCGTTTAGACATTT 58.873 33.333 0.00 0.00 35.30 2.32
1411 1484 9.328845 ACTTTTGTAAGACCGTTTAGACATTTA 57.671 29.630 0.00 0.00 35.30 1.40
1414 1487 9.545105 TTTGTAAGACCGTTTAGACATTTAAGA 57.455 29.630 0.00 0.00 0.00 2.10
1415 1488 8.524870 TGTAAGACCGTTTAGACATTTAAGAC 57.475 34.615 0.00 0.00 0.00 3.01
1416 1489 8.143193 TGTAAGACCGTTTAGACATTTAAGACA 58.857 33.333 0.00 0.00 0.00 3.41
1417 1490 8.981647 GTAAGACCGTTTAGACATTTAAGACAA 58.018 33.333 0.00 0.00 0.00 3.18
1418 1491 7.417496 AGACCGTTTAGACATTTAAGACAAC 57.583 36.000 0.00 0.00 0.00 3.32
1419 1492 7.215085 AGACCGTTTAGACATTTAAGACAACT 58.785 34.615 0.00 0.00 0.00 3.16
1420 1493 7.170998 AGACCGTTTAGACATTTAAGACAACTG 59.829 37.037 0.00 0.00 0.00 3.16
1421 1494 6.077838 CCGTTTAGACATTTAAGACAACTGC 58.922 40.000 0.00 0.00 0.00 4.40
1422 1495 6.077838 CGTTTAGACATTTAAGACAACTGCC 58.922 40.000 0.00 0.00 0.00 4.85
1423 1496 6.293190 CGTTTAGACATTTAAGACAACTGCCA 60.293 38.462 0.00 0.00 0.00 4.92
1424 1497 7.422399 GTTTAGACATTTAAGACAACTGCCAA 58.578 34.615 0.00 0.00 0.00 4.52
1425 1498 7.575414 TTAGACATTTAAGACAACTGCCAAA 57.425 32.000 0.00 0.00 0.00 3.28
1426 1499 6.463995 AGACATTTAAGACAACTGCCAAAA 57.536 33.333 0.00 0.00 0.00 2.44
1427 1500 6.273071 AGACATTTAAGACAACTGCCAAAAC 58.727 36.000 0.00 0.00 0.00 2.43
1428 1501 5.971763 ACATTTAAGACAACTGCCAAAACA 58.028 33.333 0.00 0.00 0.00 2.83
1429 1502 6.042143 ACATTTAAGACAACTGCCAAAACAG 58.958 36.000 0.00 0.00 43.59 3.16
1440 1513 5.646467 CTGCCAAAACAGTTCAATTTCAG 57.354 39.130 0.00 0.00 32.78 3.02
1441 1514 3.870419 TGCCAAAACAGTTCAATTTCAGC 59.130 39.130 0.00 0.00 0.00 4.26
1442 1515 4.122046 GCCAAAACAGTTCAATTTCAGCT 58.878 39.130 0.00 0.00 0.00 4.24
1443 1516 4.025480 GCCAAAACAGTTCAATTTCAGCTG 60.025 41.667 7.63 7.63 0.00 4.24
1444 1517 5.111293 CCAAAACAGTTCAATTTCAGCTGT 58.889 37.500 14.67 0.00 41.51 4.40
1445 1518 5.232838 CCAAAACAGTTCAATTTCAGCTGTC 59.767 40.000 14.67 0.00 39.19 3.51
1446 1519 5.841957 AAACAGTTCAATTTCAGCTGTCT 57.158 34.783 14.67 0.00 39.19 3.41
1447 1520 6.942532 AAACAGTTCAATTTCAGCTGTCTA 57.057 33.333 14.67 0.36 39.19 2.59
1448 1521 6.942532 AACAGTTCAATTTCAGCTGTCTAA 57.057 33.333 14.67 7.33 39.19 2.10
1449 1522 6.942532 ACAGTTCAATTTCAGCTGTCTAAA 57.057 33.333 14.67 7.59 35.78 1.85
1450 1523 7.333528 ACAGTTCAATTTCAGCTGTCTAAAA 57.666 32.000 14.67 7.20 35.78 1.52
1451 1524 7.196331 ACAGTTCAATTTCAGCTGTCTAAAAC 58.804 34.615 14.67 11.99 35.78 2.43
1452 1525 6.358030 CAGTTCAATTTCAGCTGTCTAAAACG 59.642 38.462 14.67 3.27 0.00 3.60
1453 1526 6.038271 AGTTCAATTTCAGCTGTCTAAAACGT 59.962 34.615 14.67 0.00 0.00 3.99
1454 1527 5.985781 TCAATTTCAGCTGTCTAAAACGTC 58.014 37.500 14.67 0.00 0.00 4.34
1455 1528 5.758296 TCAATTTCAGCTGTCTAAAACGTCT 59.242 36.000 14.67 0.00 0.00 4.18
1456 1529 6.260050 TCAATTTCAGCTGTCTAAAACGTCTT 59.740 34.615 14.67 0.00 0.00 3.01
1457 1530 7.439955 TCAATTTCAGCTGTCTAAAACGTCTTA 59.560 33.333 14.67 0.00 0.00 2.10
1458 1531 6.520792 TTTCAGCTGTCTAAAACGTCTTAC 57.479 37.500 14.67 0.00 0.00 2.34
1459 1532 5.190992 TCAGCTGTCTAAAACGTCTTACA 57.809 39.130 14.67 0.00 0.00 2.41
1460 1533 5.593968 TCAGCTGTCTAAAACGTCTTACAA 58.406 37.500 14.67 0.00 0.00 2.41
1461 1534 6.044046 TCAGCTGTCTAAAACGTCTTACAAA 58.956 36.000 14.67 0.00 0.00 2.83
1462 1535 6.535865 TCAGCTGTCTAAAACGTCTTACAAAA 59.464 34.615 14.67 0.00 0.00 2.44
1463 1536 6.846283 CAGCTGTCTAAAACGTCTTACAAAAG 59.154 38.462 5.25 0.00 0.00 2.27
1464 1537 6.537660 AGCTGTCTAAAACGTCTTACAAAAGT 59.462 34.615 0.00 0.00 34.13 2.66
1465 1538 6.627671 GCTGTCTAAAACGTCTTACAAAAGTG 59.372 38.462 0.00 0.00 34.13 3.16
1466 1539 7.464977 GCTGTCTAAAACGTCTTACAAAAGTGA 60.465 37.037 0.00 0.00 34.13 3.41
1467 1540 8.254178 TGTCTAAAACGTCTTACAAAAGTGAA 57.746 30.769 0.00 0.00 34.13 3.18
1468 1541 8.170553 TGTCTAAAACGTCTTACAAAAGTGAAC 58.829 33.333 0.00 0.00 34.13 3.18
1469 1542 8.170553 GTCTAAAACGTCTTACAAAAGTGAACA 58.829 33.333 0.00 0.00 34.13 3.18
1470 1543 8.385111 TCTAAAACGTCTTACAAAAGTGAACAG 58.615 33.333 0.00 0.00 34.13 3.16
1471 1544 6.730960 AAACGTCTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 34.13 3.41
1472 1545 5.968387 ACGTCTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 34.13 3.35
1473 1546 4.809426 ACGTCTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 34.13 3.69
1474 1547 4.211374 CGTCTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 34.13 4.30
1475 1548 5.365619 GTCTTACAAAAGTGAACAGAGGGA 58.634 41.667 0.00 0.00 34.13 4.20
1476 1549 5.467063 GTCTTACAAAAGTGAACAGAGGGAG 59.533 44.000 0.00 0.00 34.13 4.30
1486 1560 4.468153 GTGAACAGAGGGAGTAGAAAGGAT 59.532 45.833 0.00 0.00 0.00 3.24
1614 1690 6.483640 GGATATGGACAAGGTTCATAGTGTTC 59.516 42.308 3.93 0.00 37.42 3.18
1632 1708 2.819608 GTTCTGGGCAGCATTTAGTTCA 59.180 45.455 0.00 0.00 0.00 3.18
1829 1905 6.538742 CGGTAATATTCCTGTCTCACATGTTT 59.461 38.462 0.00 0.00 0.00 2.83
1838 1914 9.685276 TTCCTGTCTCACATGTTTGAATAATAT 57.315 29.630 0.00 0.00 0.00 1.28
1988 2064 8.573035 GGAAAACACCAGTCATTAAAACAGATA 58.427 33.333 0.00 0.00 0.00 1.98
2017 2093 2.283145 AGAAATGTGCTGTGGCTCTT 57.717 45.000 0.00 0.00 39.59 2.85
2159 2237 6.582636 TGAGAGTTTCATCTAACACACAACT 58.417 36.000 0.00 0.00 0.00 3.16
2181 2259 9.554724 CAACTACGCACATTTAGATAATTGTTT 57.445 29.630 0.00 0.00 30.10 2.83
2197 2275 8.992835 ATAATTGTTTGAGAGAGGAAAAATGC 57.007 30.769 0.00 0.00 0.00 3.56
2239 2317 1.919918 TTGTGTTGGCTTTTTGCTCG 58.080 45.000 0.00 0.00 42.39 5.03
2321 2399 8.782144 CATGCTCTTCCTTTTCTCCTTATTATC 58.218 37.037 0.00 0.00 0.00 1.75
2484 2564 7.004086 ACCCAATATGTTCAAGAACTCTTTCA 58.996 34.615 13.49 0.00 41.67 2.69
2674 2754 2.159572 CGATTTACTTGGTTGCTTCCCG 60.160 50.000 0.00 0.00 0.00 5.14
3163 3330 5.441500 TGTTGGTAAGTTTTGGTCTCATGA 58.558 37.500 0.00 0.00 0.00 3.07
3267 3443 4.795080 CCTTTGCAGGCTATGGTGACATC 61.795 52.174 0.00 0.00 41.63 3.06
3380 3556 3.128589 GCAATTATTGTGAAAGGCTCGGA 59.871 43.478 6.81 0.00 0.00 4.55
3420 3596 9.652114 AGGGATAAAATGAAAGAAGCTATCATT 57.348 29.630 9.77 9.77 43.62 2.57
3511 3687 4.389576 GCAACCGCACTGAAGCCG 62.390 66.667 0.00 0.00 38.36 5.52
3520 3696 0.947244 CACTGAAGCCGCTGTTCTTT 59.053 50.000 0.00 0.00 0.00 2.52
3587 3767 8.731591 ATTTTGGATATCTTGCCATTATTCCT 57.268 30.769 2.05 0.00 33.46 3.36
3744 3994 6.774656 AGAATTCCTTCAACAGATTGTGAGTT 59.225 34.615 0.65 0.00 37.11 3.01
3999 4357 1.308998 CCCGTTATTCAGATGGGCAC 58.691 55.000 0.00 0.00 36.57 5.01
4736 5372 3.812609 TGTGTCTGAGAAATAAAGCGCAA 59.187 39.130 11.47 0.00 0.00 4.85
4920 5561 5.435686 TGGTACATTTCTAGTGCCAGAAT 57.564 39.130 0.00 0.00 45.02 2.40
4995 5669 4.997395 GGTCTTATGCTCTTGTTGTTCAGA 59.003 41.667 0.00 0.00 0.00 3.27
5188 5862 4.163441 TGGGGATTTATTTCGCTGATGA 57.837 40.909 0.00 0.00 0.00 2.92
5307 5995 6.459298 GCATTCTTTTCTTGATGATGTCGGAT 60.459 38.462 0.00 0.00 0.00 4.18
5584 6295 6.258727 GCCTGATATAACCATAACCATCATCG 59.741 42.308 0.00 0.00 0.00 3.84
5725 6445 7.163441 GGCCATTTCCAAATTCTTGCATATAT 58.837 34.615 0.00 0.00 0.00 0.86
5726 6446 8.313292 GGCCATTTCCAAATTCTTGCATATATA 58.687 33.333 0.00 0.00 0.00 0.86
5727 6447 9.880157 GCCATTTCCAAATTCTTGCATATATAT 57.120 29.630 0.00 0.00 0.00 0.86
6112 6843 8.190784 CACCAAACAATACTTCATCCTTTATCC 58.809 37.037 0.00 0.00 0.00 2.59
6594 7360 0.671781 CAGCGGTTCAGGAAGTGGAG 60.672 60.000 0.00 0.00 0.00 3.86
6602 7368 4.508662 GTTCAGGAAGTGGAGATGGTAAG 58.491 47.826 0.00 0.00 0.00 2.34
7018 7826 2.912956 TGTAGCAAAGAGGAGGTCCATT 59.087 45.455 0.00 0.00 38.89 3.16
7055 7863 0.400213 TGCTCAGACATCCCGGTTTT 59.600 50.000 0.00 0.00 0.00 2.43
7096 7904 4.224370 ACGGATGGTAACTGTCTTGGTTAT 59.776 41.667 0.00 0.00 32.78 1.89
7101 7909 1.890876 AACTGTCTTGGTTATGCGCA 58.109 45.000 14.96 14.96 0.00 6.09
7184 7992 3.199727 TGTGCTATTGATAGTCTTGGGCA 59.800 43.478 0.44 0.00 32.96 5.36
7232 8223 4.603989 AATGTTGCCATGACATGTTTCA 57.396 36.364 14.26 6.46 37.76 2.69
7310 8301 8.588290 ATGGCAATTTTTAGTAGTTGACCATA 57.412 30.769 0.00 0.00 37.05 2.74
7342 8333 9.543783 TTTTAGTAATTAACCACGGCAAATTTT 57.456 25.926 0.00 0.00 0.00 1.82
7403 8394 8.394971 TGGCAATTTCGTTTATAGATCATCAT 57.605 30.769 0.00 0.00 0.00 2.45
7446 8438 8.167392 TGAGAATTTTAGTATTTTGACCCTGGA 58.833 33.333 0.00 0.00 0.00 3.86
7516 8509 6.292488 GCAAATTTTAGTGCATGTATCATGGC 60.292 38.462 10.96 5.04 40.58 4.40
7526 8519 6.757947 GTGCATGTATCATGGCAAATTTAAGT 59.242 34.615 10.96 0.00 38.10 2.24
7542 8535 9.165035 CAAATTTAAGTAATTCACCATGGCAAT 57.835 29.630 13.04 7.73 35.39 3.56
7559 8552 8.954350 CCATGGCAATTTTATTTTATGGTTCAA 58.046 29.630 0.00 0.00 31.50 2.69
7580 8573 8.650714 GTTCAAGGCAAATTTGAGTCATTAATC 58.349 33.333 22.31 0.00 36.07 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.364701 ACAAATCAGCCTTTATACCATAGCA 58.635 36.000 0.00 0.00 0.00 3.49
3 4 6.884280 ACAAATCAGCCTTTATACCATAGC 57.116 37.500 0.00 0.00 0.00 2.97
6 7 8.860088 GGATTTACAAATCAGCCTTTATACCAT 58.140 33.333 14.80 0.00 45.10 3.55
7 8 7.836685 TGGATTTACAAATCAGCCTTTATACCA 59.163 33.333 14.80 0.00 45.10 3.25
8 9 8.232913 TGGATTTACAAATCAGCCTTTATACC 57.767 34.615 14.80 0.00 45.10 2.73
11 12 7.397192 ACACTGGATTTACAAATCAGCCTTTAT 59.603 33.333 14.80 0.00 45.10 1.40
12 13 6.719370 ACACTGGATTTACAAATCAGCCTTTA 59.281 34.615 14.80 0.00 45.10 1.85
13 14 5.539955 ACACTGGATTTACAAATCAGCCTTT 59.460 36.000 14.80 0.00 45.10 3.11
14 15 5.047802 CACACTGGATTTACAAATCAGCCTT 60.048 40.000 14.80 0.00 45.10 4.35
15 16 4.460382 CACACTGGATTTACAAATCAGCCT 59.540 41.667 14.80 0.47 45.10 4.58
16 17 4.380867 CCACACTGGATTTACAAATCAGCC 60.381 45.833 14.80 1.59 45.10 4.85
17 18 4.380867 CCCACACTGGATTTACAAATCAGC 60.381 45.833 14.80 1.75 45.10 4.26
18 19 4.380867 GCCCACACTGGATTTACAAATCAG 60.381 45.833 14.80 12.17 45.10 2.90
19 20 3.509575 GCCCACACTGGATTTACAAATCA 59.490 43.478 14.80 3.03 45.10 2.57
20 21 3.119137 GGCCCACACTGGATTTACAAATC 60.119 47.826 6.20 6.20 40.96 2.17
21 22 2.831526 GGCCCACACTGGATTTACAAAT 59.168 45.455 0.00 0.00 40.96 2.32
22 23 2.243810 GGCCCACACTGGATTTACAAA 58.756 47.619 0.00 0.00 40.96 2.83
23 24 1.884497 CGGCCCACACTGGATTTACAA 60.884 52.381 0.00 0.00 40.96 2.41
24 25 0.322098 CGGCCCACACTGGATTTACA 60.322 55.000 0.00 0.00 40.96 2.41
25 26 0.322187 ACGGCCCACACTGGATTTAC 60.322 55.000 0.00 0.00 40.96 2.01
26 27 1.277579 TACGGCCCACACTGGATTTA 58.722 50.000 0.00 0.00 40.96 1.40
27 28 0.623723 ATACGGCCCACACTGGATTT 59.376 50.000 0.00 0.00 40.96 2.17
28 29 1.140252 GTATACGGCCCACACTGGATT 59.860 52.381 0.00 0.00 40.96 3.01
29 30 0.756903 GTATACGGCCCACACTGGAT 59.243 55.000 0.00 0.00 40.96 3.41
30 31 1.332144 GGTATACGGCCCACACTGGA 61.332 60.000 0.00 0.00 40.96 3.86
31 32 1.145377 GGTATACGGCCCACACTGG 59.855 63.158 0.00 0.00 37.25 4.00
32 33 0.104304 GAGGTATACGGCCCACACTG 59.896 60.000 0.00 0.00 0.00 3.66
33 34 0.032416 AGAGGTATACGGCCCACACT 60.032 55.000 0.00 0.00 0.00 3.55
34 35 0.104304 CAGAGGTATACGGCCCACAC 59.896 60.000 0.00 0.00 0.00 3.82
35 36 1.682451 GCAGAGGTATACGGCCCACA 61.682 60.000 0.00 0.00 0.00 4.17
36 37 1.069258 GCAGAGGTATACGGCCCAC 59.931 63.158 0.00 0.00 0.00 4.61
37 38 2.138179 GGCAGAGGTATACGGCCCA 61.138 63.158 12.77 0.00 41.38 5.36
38 39 2.138179 TGGCAGAGGTATACGGCCC 61.138 63.158 18.10 6.80 45.26 5.80
39 40 1.069258 GTGGCAGAGGTATACGGCC 59.931 63.158 15.51 15.51 45.85 6.13
40 41 0.249489 CAGTGGCAGAGGTATACGGC 60.249 60.000 0.00 0.00 0.00 5.68
41 42 0.249489 GCAGTGGCAGAGGTATACGG 60.249 60.000 0.00 0.00 40.72 4.02
42 43 0.747255 AGCAGTGGCAGAGGTATACG 59.253 55.000 0.00 0.00 44.61 3.06
43 44 1.069358 GGAGCAGTGGCAGAGGTATAC 59.931 57.143 0.00 0.00 44.61 1.47
44 45 1.414158 GGAGCAGTGGCAGAGGTATA 58.586 55.000 0.00 0.00 44.61 1.47
45 46 1.341156 GGGAGCAGTGGCAGAGGTAT 61.341 60.000 0.00 0.00 44.61 2.73
46 47 1.990060 GGGAGCAGTGGCAGAGGTA 60.990 63.158 0.00 0.00 44.61 3.08
47 48 3.325753 GGGAGCAGTGGCAGAGGT 61.326 66.667 0.00 0.00 44.61 3.85
48 49 4.106925 GGGGAGCAGTGGCAGAGG 62.107 72.222 0.00 0.00 44.61 3.69
49 50 3.324930 TGGGGAGCAGTGGCAGAG 61.325 66.667 0.00 0.00 44.61 3.35
50 51 3.640407 GTGGGGAGCAGTGGCAGA 61.640 66.667 0.00 0.00 44.61 4.26
51 52 3.914579 CTGTGGGGAGCAGTGGCAG 62.915 68.421 0.00 0.00 44.61 4.85
52 53 3.957586 CTGTGGGGAGCAGTGGCA 61.958 66.667 0.00 0.00 44.61 4.92
53 54 2.976490 ATCTGTGGGGAGCAGTGGC 61.976 63.158 0.00 0.00 41.61 5.01
54 55 1.077930 CATCTGTGGGGAGCAGTGG 60.078 63.158 0.00 0.00 35.60 4.00
55 56 0.392193 GACATCTGTGGGGAGCAGTG 60.392 60.000 0.00 0.00 35.60 3.66
56 57 1.892819 CGACATCTGTGGGGAGCAGT 61.893 60.000 0.00 0.00 35.60 4.40
57 58 1.153489 CGACATCTGTGGGGAGCAG 60.153 63.158 0.00 0.00 35.43 4.24
58 59 1.191489 TTCGACATCTGTGGGGAGCA 61.191 55.000 0.00 0.00 0.00 4.26
59 60 0.036388 TTTCGACATCTGTGGGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
69 70 6.986904 AGAAGATAAAACCCTTTCGACATC 57.013 37.500 0.00 0.00 0.00 3.06
73 74 9.106070 GCTATAAAGAAGATAAAACCCTTTCGA 57.894 33.333 0.00 0.00 0.00 3.71
83 84 8.867097 ACCTATCCACGCTATAAAGAAGATAAA 58.133 33.333 0.00 0.00 0.00 1.40
85 86 7.668469 TCACCTATCCACGCTATAAAGAAGATA 59.332 37.037 0.00 0.00 0.00 1.98
86 87 6.493802 TCACCTATCCACGCTATAAAGAAGAT 59.506 38.462 0.00 0.00 0.00 2.40
90 91 6.474140 TTTCACCTATCCACGCTATAAAGA 57.526 37.500 0.00 0.00 0.00 2.52
100 101 5.293569 CCGAAACACTATTTCACCTATCCAC 59.706 44.000 0.79 0.00 0.00 4.02
105 106 6.406624 GGAGATCCGAAACACTATTTCACCTA 60.407 42.308 0.00 0.00 0.00 3.08
108 109 5.420409 AGGAGATCCGAAACACTATTTCAC 58.580 41.667 0.00 0.00 42.08 3.18
125 126 5.144100 AGACTAATTCACATCGGAGGAGAT 58.856 41.667 0.00 0.00 0.00 2.75
129 130 6.015856 AGTCATAGACTAATTCACATCGGAGG 60.016 42.308 0.00 0.00 41.51 4.30
298 302 5.943416 TGGTTAGTGGGTTTTCACTCATATG 59.057 40.000 0.00 0.00 43.82 1.78
328 333 2.024941 GGAGGGGTTGTCCATTCTGATT 60.025 50.000 0.00 0.00 37.22 2.57
329 334 1.566231 GGAGGGGTTGTCCATTCTGAT 59.434 52.381 0.00 0.00 37.22 2.90
330 335 0.991920 GGAGGGGTTGTCCATTCTGA 59.008 55.000 0.00 0.00 37.22 3.27
332 337 1.214992 GGGGAGGGGTTGTCCATTCT 61.215 60.000 0.00 0.00 35.57 2.40
347 352 3.899545 GACGAGGGTGGTCAGGGGA 62.900 68.421 0.00 0.00 34.56 4.81
354 359 4.657824 CGCGTTGACGAGGGTGGT 62.658 66.667 7.85 0.00 43.02 4.16
371 376 1.784036 GCGGTCGGTAGTAGCTCTCC 61.784 65.000 0.00 0.00 0.00 3.71
376 382 0.179092 AATTGGCGGTCGGTAGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
380 386 1.269621 CCTAGAATTGGCGGTCGGTAG 60.270 57.143 0.00 0.00 0.00 3.18
401 407 1.006337 GCCATTTTGGTGCTTGCGA 60.006 52.632 0.00 0.00 40.46 5.10
461 471 3.345808 GCGAGCGACAACCAGCAA 61.346 61.111 0.00 0.00 35.48 3.91
514 524 2.742116 GCTCTCCCATTGGCCGGTA 61.742 63.158 1.90 0.00 0.00 4.02
521 531 1.895707 GATGCCGGCTCTCCCATTG 60.896 63.158 29.70 0.00 0.00 2.82
523 533 3.933722 CGATGCCGGCTCTCCCAT 61.934 66.667 29.70 11.75 0.00 4.00
541 551 2.672996 CTTGTCCACCGCCTTGGG 60.673 66.667 0.00 0.00 44.64 4.12
551 561 1.837051 AGTGCCTCCGACTTGTCCA 60.837 57.895 0.00 0.00 0.00 4.02
561 571 1.270907 TCTTCTTCCTCAGTGCCTCC 58.729 55.000 0.00 0.00 0.00 4.30
569 579 1.296715 GGCGCCTTCTTCTTCCTCA 59.703 57.895 22.15 0.00 0.00 3.86
570 580 1.811679 CGGCGCCTTCTTCTTCCTC 60.812 63.158 26.68 0.00 0.00 3.71
594 604 4.060667 ATTTGGGGAGGCGGTGGG 62.061 66.667 0.00 0.00 0.00 4.61
595 605 2.440247 GATTTGGGGAGGCGGTGG 60.440 66.667 0.00 0.00 0.00 4.61
596 606 1.750399 CAGATTTGGGGAGGCGGTG 60.750 63.158 0.00 0.00 0.00 4.94
597 607 2.677228 CAGATTTGGGGAGGCGGT 59.323 61.111 0.00 0.00 0.00 5.68
598 608 2.830370 GCAGATTTGGGGAGGCGG 60.830 66.667 0.00 0.00 0.00 6.13
599 609 3.204827 CGCAGATTTGGGGAGGCG 61.205 66.667 0.00 0.00 38.45 5.52
605 615 3.799753 CGAGACCGCAGATTTGGG 58.200 61.111 0.00 0.00 37.03 4.12
626 636 3.774702 GTGGAAAGCGTCGGCGTC 61.775 66.667 12.58 3.05 46.35 5.19
631 641 3.000080 GCACGAGTGGAAAGCGTCG 62.000 63.158 5.32 0.00 35.90 5.12
648 658 1.176619 AACCCACGGTTTGCCTTAGC 61.177 55.000 0.00 0.00 44.33 3.09
649 659 2.188062 TAACCCACGGTTTGCCTTAG 57.812 50.000 0.59 0.00 44.33 2.18
660 670 6.094325 TCTGCCTTTTTATTGTATAACCCACG 59.906 38.462 0.00 0.00 0.00 4.94
701 711 6.839124 TTGCCAAGACAAGATTTATCACAT 57.161 33.333 0.00 0.00 0.00 3.21
703 713 6.913170 TCTTTGCCAAGACAAGATTTATCAC 58.087 36.000 0.00 0.00 33.80 3.06
720 730 6.720012 TTTTTGAAACACTTTCTCTTTGCC 57.280 33.333 0.00 0.00 40.32 4.52
721 731 6.684131 GCATTTTTGAAACACTTTCTCTTTGC 59.316 34.615 0.00 0.00 40.32 3.68
722 732 7.967178 AGCATTTTTGAAACACTTTCTCTTTG 58.033 30.769 0.00 0.00 40.32 2.77
741 751 7.311171 CCTCCCTCTCATCATATAAGAGCATTT 60.311 40.741 0.00 0.00 36.12 2.32
744 754 5.022122 CCTCCCTCTCATCATATAAGAGCA 58.978 45.833 0.00 0.00 36.12 4.26
746 756 5.836705 TCCCTCCCTCTCATCATATAAGAG 58.163 45.833 0.00 0.00 36.99 2.85
755 765 5.368230 AGAAAATTACTCCCTCCCTCTCATC 59.632 44.000 0.00 0.00 0.00 2.92
759 769 7.366913 CCAATAAGAAAATTACTCCCTCCCTCT 60.367 40.741 0.00 0.00 0.00 3.69
762 772 5.302059 GCCAATAAGAAAATTACTCCCTCCC 59.698 44.000 0.00 0.00 0.00 4.30
770 780 9.034544 GGAATGATGTGCCAATAAGAAAATTAC 57.965 33.333 0.00 0.00 0.00 1.89
773 783 7.427989 AGGAATGATGTGCCAATAAGAAAAT 57.572 32.000 0.00 0.00 0.00 1.82
780 790 7.658525 AAAACATAGGAATGATGTGCCAATA 57.341 32.000 0.00 0.00 37.59 1.90
781 791 6.549433 AAAACATAGGAATGATGTGCCAAT 57.451 33.333 0.00 0.00 37.59 3.16
806 817 0.771755 AGGACCCCAAGAGGAAACAC 59.228 55.000 0.00 0.00 38.24 3.32
807 818 0.771127 CAGGACCCCAAGAGGAAACA 59.229 55.000 0.00 0.00 38.24 2.83
808 819 0.609406 GCAGGACCCCAAGAGGAAAC 60.609 60.000 0.00 0.00 38.24 2.78
809 820 1.065410 TGCAGGACCCCAAGAGGAAA 61.065 55.000 0.00 0.00 38.24 3.13
814 825 1.152830 GGTTTGCAGGACCCCAAGA 59.847 57.895 9.56 0.00 0.00 3.02
815 826 0.758685 TTGGTTTGCAGGACCCCAAG 60.759 55.000 16.13 0.00 36.30 3.61
816 827 0.325671 TTTGGTTTGCAGGACCCCAA 60.326 50.000 16.13 9.01 36.30 4.12
818 829 0.469144 TCTTTGGTTTGCAGGACCCC 60.469 55.000 16.13 1.48 36.30 4.95
904 921 1.197721 CCCAGTTTCTGTGAACATCGC 59.802 52.381 0.00 0.00 31.94 4.58
964 981 0.734889 CACCTCCGAATGCCATTGAC 59.265 55.000 0.00 0.00 0.00 3.18
968 985 0.038166 AACACACCTCCGAATGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
1057 1074 0.611340 ACGTCCACCTGGTACTCCTC 60.611 60.000 0.00 0.00 36.34 3.71
1245 1262 5.557891 ATGAAGAATTTGCGGAAGAAGAG 57.442 39.130 0.00 0.00 0.00 2.85
1266 1283 7.397192 ACATAACCTGTTCTCCTAATTTGCAAT 59.603 33.333 0.00 0.00 32.90 3.56
1368 1441 4.559862 AAAGTGAATGGAGGGAGTAGTG 57.440 45.455 0.00 0.00 0.00 2.74
1369 1442 4.351111 ACAAAAGTGAATGGAGGGAGTAGT 59.649 41.667 0.00 0.00 0.00 2.73
1371 1444 4.993705 ACAAAAGTGAATGGAGGGAGTA 57.006 40.909 0.00 0.00 0.00 2.59
1372 1445 3.884037 ACAAAAGTGAATGGAGGGAGT 57.116 42.857 0.00 0.00 0.00 3.85
1373 1446 5.412904 GTCTTACAAAAGTGAATGGAGGGAG 59.587 44.000 0.00 0.00 34.13 4.30
1374 1447 5.313712 GTCTTACAAAAGTGAATGGAGGGA 58.686 41.667 0.00 0.00 34.13 4.20
1375 1448 4.459337 GGTCTTACAAAAGTGAATGGAGGG 59.541 45.833 0.00 0.00 34.13 4.30
1376 1449 4.154195 CGGTCTTACAAAAGTGAATGGAGG 59.846 45.833 0.00 0.00 34.13 4.30
1377 1450 4.755123 ACGGTCTTACAAAAGTGAATGGAG 59.245 41.667 0.00 0.00 34.13 3.86
1378 1451 4.710324 ACGGTCTTACAAAAGTGAATGGA 58.290 39.130 0.00 0.00 34.13 3.41
1379 1452 5.432885 AACGGTCTTACAAAAGTGAATGG 57.567 39.130 0.00 0.00 34.13 3.16
1380 1453 7.797123 GTCTAAACGGTCTTACAAAAGTGAATG 59.203 37.037 0.00 0.00 34.13 2.67
1381 1454 7.496591 TGTCTAAACGGTCTTACAAAAGTGAAT 59.503 33.333 0.00 0.00 34.13 2.57
1382 1455 6.817641 TGTCTAAACGGTCTTACAAAAGTGAA 59.182 34.615 0.00 0.00 34.13 3.18
1383 1456 6.339730 TGTCTAAACGGTCTTACAAAAGTGA 58.660 36.000 0.00 0.00 34.13 3.41
1384 1457 6.592798 TGTCTAAACGGTCTTACAAAAGTG 57.407 37.500 0.00 0.00 34.13 3.16
1385 1458 7.797038 AATGTCTAAACGGTCTTACAAAAGT 57.203 32.000 0.00 0.00 34.13 2.66
1388 1461 9.545105 TCTTAAATGTCTAAACGGTCTTACAAA 57.455 29.630 0.00 0.00 0.00 2.83
1389 1462 8.981647 GTCTTAAATGTCTAAACGGTCTTACAA 58.018 33.333 0.00 0.00 0.00 2.41
1390 1463 8.143193 TGTCTTAAATGTCTAAACGGTCTTACA 58.857 33.333 0.00 0.00 0.00 2.41
1391 1464 8.524870 TGTCTTAAATGTCTAAACGGTCTTAC 57.475 34.615 0.00 0.00 0.00 2.34
1392 1465 8.981647 GTTGTCTTAAATGTCTAAACGGTCTTA 58.018 33.333 0.00 0.00 0.00 2.10
1393 1466 7.713942 AGTTGTCTTAAATGTCTAAACGGTCTT 59.286 33.333 0.00 0.00 0.00 3.01
1394 1467 7.170998 CAGTTGTCTTAAATGTCTAAACGGTCT 59.829 37.037 0.00 0.00 0.00 3.85
1395 1468 7.288672 CAGTTGTCTTAAATGTCTAAACGGTC 58.711 38.462 0.00 0.00 0.00 4.79
1396 1469 6.293244 GCAGTTGTCTTAAATGTCTAAACGGT 60.293 38.462 0.00 0.00 0.00 4.83
1397 1470 6.077838 GCAGTTGTCTTAAATGTCTAAACGG 58.922 40.000 0.00 0.00 0.00 4.44
1398 1471 6.077838 GGCAGTTGTCTTAAATGTCTAAACG 58.922 40.000 0.00 0.00 0.00 3.60
1399 1472 6.966021 TGGCAGTTGTCTTAAATGTCTAAAC 58.034 36.000 0.00 0.00 0.00 2.01
1400 1473 7.575414 TTGGCAGTTGTCTTAAATGTCTAAA 57.425 32.000 0.00 0.00 0.00 1.85
1401 1474 7.575414 TTTGGCAGTTGTCTTAAATGTCTAA 57.425 32.000 0.00 0.00 0.00 2.10
1402 1475 7.067615 TGTTTTGGCAGTTGTCTTAAATGTCTA 59.932 33.333 0.00 0.00 0.00 2.59
1403 1476 6.127479 TGTTTTGGCAGTTGTCTTAAATGTCT 60.127 34.615 0.00 0.00 0.00 3.41
1404 1477 6.039616 TGTTTTGGCAGTTGTCTTAAATGTC 58.960 36.000 0.00 0.00 0.00 3.06
1405 1478 5.971763 TGTTTTGGCAGTTGTCTTAAATGT 58.028 33.333 0.00 0.00 0.00 2.71
1406 1479 6.042143 ACTGTTTTGGCAGTTGTCTTAAATG 58.958 36.000 0.00 0.00 46.45 2.32
1407 1480 6.220726 ACTGTTTTGGCAGTTGTCTTAAAT 57.779 33.333 0.00 0.00 46.45 1.40
1408 1481 5.652994 ACTGTTTTGGCAGTTGTCTTAAA 57.347 34.783 0.00 0.00 46.45 1.52
1418 1491 4.025480 GCTGAAATTGAACTGTTTTGGCAG 60.025 41.667 0.00 0.00 41.92 4.85
1419 1492 3.870419 GCTGAAATTGAACTGTTTTGGCA 59.130 39.130 0.00 0.00 0.00 4.92
1420 1493 4.025480 CAGCTGAAATTGAACTGTTTTGGC 60.025 41.667 8.42 0.00 0.00 4.52
1421 1494 5.111293 ACAGCTGAAATTGAACTGTTTTGG 58.889 37.500 23.35 0.00 38.38 3.28
1422 1495 6.038356 AGACAGCTGAAATTGAACTGTTTTG 58.962 36.000 23.35 0.00 41.45 2.44
1423 1496 6.212888 AGACAGCTGAAATTGAACTGTTTT 57.787 33.333 23.35 0.00 41.45 2.43
1424 1497 5.841957 AGACAGCTGAAATTGAACTGTTT 57.158 34.783 23.35 0.00 41.45 2.83
1425 1498 6.942532 TTAGACAGCTGAAATTGAACTGTT 57.057 33.333 23.35 0.00 41.45 3.16
1426 1499 6.942532 TTTAGACAGCTGAAATTGAACTGT 57.057 33.333 23.35 0.00 43.93 3.55
1427 1500 6.358030 CGTTTTAGACAGCTGAAATTGAACTG 59.642 38.462 23.35 9.82 33.03 3.16
1428 1501 6.038271 ACGTTTTAGACAGCTGAAATTGAACT 59.962 34.615 23.35 8.36 33.03 3.01
1429 1502 6.199393 ACGTTTTAGACAGCTGAAATTGAAC 58.801 36.000 23.35 15.30 33.03 3.18
1430 1503 6.260050 AGACGTTTTAGACAGCTGAAATTGAA 59.740 34.615 23.35 4.96 33.03 2.69
1431 1504 5.758296 AGACGTTTTAGACAGCTGAAATTGA 59.242 36.000 23.35 0.00 33.03 2.57
1432 1505 5.990408 AGACGTTTTAGACAGCTGAAATTG 58.010 37.500 23.35 9.51 33.03 2.32
1433 1506 6.619801 AAGACGTTTTAGACAGCTGAAATT 57.380 33.333 23.35 0.00 33.03 1.82
1434 1507 6.704493 TGTAAGACGTTTTAGACAGCTGAAAT 59.296 34.615 23.35 8.03 33.03 2.17
1435 1508 6.044046 TGTAAGACGTTTTAGACAGCTGAAA 58.956 36.000 23.35 7.93 0.00 2.69
1436 1509 5.593968 TGTAAGACGTTTTAGACAGCTGAA 58.406 37.500 23.35 0.48 0.00 3.02
1437 1510 5.190992 TGTAAGACGTTTTAGACAGCTGA 57.809 39.130 23.35 0.00 0.00 4.26
1438 1511 5.900339 TTGTAAGACGTTTTAGACAGCTG 57.100 39.130 13.48 13.48 0.00 4.24
1439 1512 6.537660 ACTTTTGTAAGACGTTTTAGACAGCT 59.462 34.615 0.00 0.00 35.30 4.24
1440 1513 6.627671 CACTTTTGTAAGACGTTTTAGACAGC 59.372 38.462 0.00 0.00 35.30 4.40
1441 1514 7.902032 TCACTTTTGTAAGACGTTTTAGACAG 58.098 34.615 0.00 0.25 35.30 3.51
1442 1515 7.830940 TCACTTTTGTAAGACGTTTTAGACA 57.169 32.000 0.00 0.00 35.30 3.41
1443 1516 8.170553 TGTTCACTTTTGTAAGACGTTTTAGAC 58.829 33.333 0.00 0.00 35.30 2.59
1444 1517 8.254178 TGTTCACTTTTGTAAGACGTTTTAGA 57.746 30.769 0.00 0.00 35.30 2.10
1445 1518 8.385111 TCTGTTCACTTTTGTAAGACGTTTTAG 58.615 33.333 0.00 0.00 35.30 1.85
1446 1519 8.254178 TCTGTTCACTTTTGTAAGACGTTTTA 57.746 30.769 0.00 0.00 35.30 1.52
1447 1520 7.136289 TCTGTTCACTTTTGTAAGACGTTTT 57.864 32.000 0.00 0.00 35.30 2.43
1448 1521 6.183360 CCTCTGTTCACTTTTGTAAGACGTTT 60.183 38.462 0.00 0.00 35.30 3.60
1449 1522 5.293569 CCTCTGTTCACTTTTGTAAGACGTT 59.706 40.000 0.00 0.00 35.30 3.99
1450 1523 4.809426 CCTCTGTTCACTTTTGTAAGACGT 59.191 41.667 0.00 0.00 35.30 4.34
1451 1524 4.211374 CCCTCTGTTCACTTTTGTAAGACG 59.789 45.833 0.00 0.00 35.30 4.18
1452 1525 5.365619 TCCCTCTGTTCACTTTTGTAAGAC 58.634 41.667 0.00 0.00 35.30 3.01
1453 1526 5.130477 ACTCCCTCTGTTCACTTTTGTAAGA 59.870 40.000 0.00 0.00 35.30 2.10
1454 1527 5.368989 ACTCCCTCTGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
1455 1528 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
1456 1529 5.836898 TCTACTCCCTCTGTTCACTTTTGTA 59.163 40.000 0.00 0.00 0.00 2.41
1457 1530 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
1458 1531 5.215252 TCTACTCCCTCTGTTCACTTTTG 57.785 43.478 0.00 0.00 0.00 2.44
1459 1532 5.888982 TTCTACTCCCTCTGTTCACTTTT 57.111 39.130 0.00 0.00 0.00 2.27
1460 1533 5.221742 CCTTTCTACTCCCTCTGTTCACTTT 60.222 44.000 0.00 0.00 0.00 2.66
1461 1534 4.284746 CCTTTCTACTCCCTCTGTTCACTT 59.715 45.833 0.00 0.00 0.00 3.16
1462 1535 3.835395 CCTTTCTACTCCCTCTGTTCACT 59.165 47.826 0.00 0.00 0.00 3.41
1463 1536 3.833070 TCCTTTCTACTCCCTCTGTTCAC 59.167 47.826 0.00 0.00 0.00 3.18
1464 1537 4.127918 TCCTTTCTACTCCCTCTGTTCA 57.872 45.455 0.00 0.00 0.00 3.18
1465 1538 4.712337 TCATCCTTTCTACTCCCTCTGTTC 59.288 45.833 0.00 0.00 0.00 3.18
1466 1539 4.689062 TCATCCTTTCTACTCCCTCTGTT 58.311 43.478 0.00 0.00 0.00 3.16
1467 1540 4.338795 TCATCCTTTCTACTCCCTCTGT 57.661 45.455 0.00 0.00 0.00 3.41
1468 1541 4.467795 TGTTCATCCTTTCTACTCCCTCTG 59.532 45.833 0.00 0.00 0.00 3.35
1469 1542 4.689062 TGTTCATCCTTTCTACTCCCTCT 58.311 43.478 0.00 0.00 0.00 3.69
1470 1543 5.046231 AGTTGTTCATCCTTTCTACTCCCTC 60.046 44.000 0.00 0.00 0.00 4.30
1471 1544 4.846940 AGTTGTTCATCCTTTCTACTCCCT 59.153 41.667 0.00 0.00 0.00 4.20
1472 1545 5.167303 AGTTGTTCATCCTTTCTACTCCC 57.833 43.478 0.00 0.00 0.00 4.30
1473 1546 8.617290 TTTAAGTTGTTCATCCTTTCTACTCC 57.383 34.615 0.00 0.00 0.00 3.85
1516 1590 2.105477 AGCTGCATTCCCGTCAAGATAT 59.895 45.455 1.02 0.00 0.00 1.63
1520 1594 1.737838 TTAGCTGCATTCCCGTCAAG 58.262 50.000 1.02 0.00 0.00 3.02
1522 1596 2.418368 AATTAGCTGCATTCCCGTCA 57.582 45.000 1.02 0.00 0.00 4.35
1614 1690 3.181483 GGAATGAACTAAATGCTGCCCAG 60.181 47.826 0.00 0.00 0.00 4.45
1763 1839 4.712122 TTGTATACGATGCAGAGTGTGA 57.288 40.909 7.06 0.00 0.00 3.58
1838 1914 8.265055 CAGTTCAAGTTCCAATCCTTATAGGTA 58.735 37.037 0.00 0.00 36.53 3.08
1839 1915 7.112779 CAGTTCAAGTTCCAATCCTTATAGGT 58.887 38.462 0.00 0.00 36.53 3.08
1840 1916 6.038714 GCAGTTCAAGTTCCAATCCTTATAGG 59.961 42.308 0.00 0.00 36.46 2.57
1841 1917 6.599244 TGCAGTTCAAGTTCCAATCCTTATAG 59.401 38.462 0.00 0.00 0.00 1.31
1844 1920 4.724399 TGCAGTTCAAGTTCCAATCCTTA 58.276 39.130 0.00 0.00 0.00 2.69
1845 1921 3.565307 TGCAGTTCAAGTTCCAATCCTT 58.435 40.909 0.00 0.00 0.00 3.36
1847 1923 2.352127 GCTGCAGTTCAAGTTCCAATCC 60.352 50.000 16.64 0.00 0.00 3.01
1848 1924 2.294233 TGCTGCAGTTCAAGTTCCAATC 59.706 45.455 16.64 0.00 0.00 2.67
1988 2064 6.571150 GCCACAGCACATTTCTTTTAGAATCT 60.571 38.462 0.00 0.00 39.53 2.40
2159 2237 9.157104 TCTCAAACAATTATCTAAATGTGCGTA 57.843 29.630 0.00 0.00 30.34 4.42
2181 2259 4.330250 CCTCTTGCATTTTTCCTCTCTCA 58.670 43.478 0.00 0.00 0.00 3.27
2197 2275 1.818642 CCTGAGCAGAAACCCTCTTG 58.181 55.000 0.00 0.00 29.07 3.02
2239 2317 2.984471 TCGTCTTTGTATTCACGTGCTC 59.016 45.455 11.67 1.53 33.89 4.26
2245 2323 9.690434 GAATATTGTTCTCGTCTTTGTATTCAC 57.310 33.333 0.00 0.00 0.00 3.18
2321 2399 2.624838 ACAAAGGTTGCATGGTCTTCAG 59.375 45.455 0.00 0.00 0.00 3.02
2484 2564 5.017490 AGTAGCTTGTGGTGTATAGTCTGT 58.983 41.667 0.00 0.00 0.00 3.41
2674 2754 8.598041 AGAATGACCTTATAGATAACATCCCAC 58.402 37.037 0.00 0.00 0.00 4.61
3163 3330 8.931775 GCGGAAAGTGGAAATTATTTGTTTAAT 58.068 29.630 0.00 0.00 0.00 1.40
3267 3443 6.547141 TCATTTCCCTTAGATTTACAGCATGG 59.453 38.462 0.00 0.00 43.62 3.66
3380 3556 0.541863 ATCCCTGAATCGCTCGGTTT 59.458 50.000 0.00 0.00 0.00 3.27
3604 3784 8.655092 CATCTTCAAAGACTCACAATAGAAGAC 58.345 37.037 0.00 0.00 41.80 3.01
4364 4722 3.073678 TGTGAATCTCAAACCATCACCG 58.926 45.455 0.00 0.00 39.64 4.94
4546 4923 5.331607 CGATGCATACTTCGCTTGTACTAAC 60.332 44.000 0.00 0.00 36.77 2.34
4609 5244 3.812053 AGTTCTTGCTCTGACATTCACAC 59.188 43.478 0.00 0.00 0.00 3.82
4920 5561 6.549364 CACCCATTAATAACTTGGAAGCCATA 59.451 38.462 0.00 0.00 31.53 2.74
4933 5574 4.528920 GGTACACCTGCACCCATTAATAA 58.471 43.478 0.00 0.00 0.00 1.40
4934 5575 4.159244 GGTACACCTGCACCCATTAATA 57.841 45.455 0.00 0.00 0.00 0.98
4935 5576 3.012934 GGTACACCTGCACCCATTAAT 57.987 47.619 0.00 0.00 0.00 1.40
4995 5669 1.422531 TTGCCAATGCCAACTCCTTT 58.577 45.000 0.00 0.00 36.33 3.11
5584 6295 0.441533 CTGCAAGATGCTGTGACGAC 59.558 55.000 3.78 0.00 45.31 4.34
6594 7360 3.209410 CTTCTGCCCATCACTTACCATC 58.791 50.000 0.00 0.00 0.00 3.51
6602 7368 2.368221 AGATAGAGCTTCTGCCCATCAC 59.632 50.000 0.00 0.00 40.80 3.06
6690 7471 6.219417 AGTCTTCATGATTACCTGACAGAG 57.781 41.667 3.32 0.00 0.00 3.35
7018 7826 2.888594 GCAGACGCTCCATTGTAACTA 58.111 47.619 0.00 0.00 34.30 2.24
7075 7883 4.335594 GCATAACCAAGACAGTTACCATCC 59.664 45.833 0.00 0.00 32.77 3.51
7101 7909 2.956987 GCAACCAGATGCGCACTT 59.043 55.556 14.90 0.00 36.45 3.16
7184 7992 1.202770 GCCGAATACAAGGGTGCCTAT 60.203 52.381 0.00 0.00 31.13 2.57
7310 8301 8.578151 TGCCGTGGTTAATTACTAAAAATTTCT 58.422 29.630 0.00 0.00 31.63 2.52
7342 8333 8.926374 ACTAAAAATTGCCATGATCCATGAATA 58.074 29.630 8.38 0.00 43.81 1.75
7422 8414 8.950007 TTCCAGGGTCAAAATACTAAAATTCT 57.050 30.769 0.00 0.00 0.00 2.40
7423 8415 9.990360 TTTTCCAGGGTCAAAATACTAAAATTC 57.010 29.630 0.00 0.00 0.00 2.17
7431 8423 7.939784 ACTAGATTTTCCAGGGTCAAAATAC 57.060 36.000 0.00 0.00 33.31 1.89
7442 8434 9.748708 TTTCATTGTCAAAACTAGATTTTCCAG 57.251 29.630 0.00 0.00 38.50 3.86
7483 8476 3.261580 GCACTAAAATTTGCCATGGTCC 58.738 45.455 14.67 0.00 32.21 4.46
7516 8509 8.545229 TTGCCATGGTGAATTACTTAAATTTG 57.455 30.769 14.67 0.00 37.93 2.32
7559 8552 6.759827 GCATGATTAATGACTCAAATTTGCCT 59.240 34.615 13.54 0.21 38.72 4.75
7580 8573 8.531622 TGTCACCAATTACTTTAAAATGCATG 57.468 30.769 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.