Multiple sequence alignment - TraesCS7D01G202700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G202700 chr7D 100.000 2758 0 0 1 2758 161188370 161185613 0.000000e+00 5094
1 TraesCS7D01G202700 chr7D 93.347 481 30 1 2278 2758 88017695 88017217 0.000000e+00 710
2 TraesCS7D01G202700 chr7D 93.574 249 14 2 1996 2243 161160043 161159796 1.210000e-98 370
3 TraesCS7D01G202700 chr7D 96.209 211 5 2 2278 2488 161160251 161160044 2.630000e-90 342
4 TraesCS7D01G202700 chr7A 88.874 1510 95 27 820 2276 162513736 162512247 0.000000e+00 1790
5 TraesCS7D01G202700 chr7A 85.866 658 59 21 1 637 162514571 162513927 0.000000e+00 669
6 TraesCS7D01G202700 chr7A 89.408 321 28 5 2442 2757 507721316 507720997 1.540000e-107 399
7 TraesCS7D01G202700 chr7B 91.831 710 34 11 820 1515 123311961 123311262 0.000000e+00 968
8 TraesCS7D01G202700 chr7B 87.500 744 61 15 1544 2276 123311262 123310540 0.000000e+00 830
9 TraesCS7D01G202700 chr7B 91.051 447 25 9 1 432 123312852 123312406 8.510000e-165 590
10 TraesCS7D01G202700 chr7B 88.498 313 31 4 2449 2757 665156253 665155942 9.330000e-100 374
11 TraesCS7D01G202700 chr3D 90.437 481 31 2 2278 2758 48274063 48274528 1.090000e-173 619
12 TraesCS7D01G202700 chr6A 87.552 482 54 5 2278 2757 447616036 447616513 1.120000e-153 553
13 TraesCS7D01G202700 chr4D 85.996 457 59 3 2304 2757 488808536 488808990 4.130000e-133 484
14 TraesCS7D01G202700 chr5A 90.127 314 26 4 2449 2758 531889824 531890136 1.190000e-108 403
15 TraesCS7D01G202700 chr5A 87.898 314 31 6 2449 2757 523280774 523281085 2.020000e-96 363
16 TraesCS7D01G202700 chr2A 88.474 321 33 3 2442 2758 755830772 755830452 4.310000e-103 385
17 TraesCS7D01G202700 chr2B 85.794 359 43 7 2406 2757 401299077 401298720 9.330000e-100 374
18 TraesCS7D01G202700 chr5B 91.765 85 5 1 2278 2362 683567076 683567158 1.740000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G202700 chr7D 161185613 161188370 2757 True 5094.0 5094 100.000000 1 2758 1 chr7D.!!$R2 2757
1 TraesCS7D01G202700 chr7A 162512247 162514571 2324 True 1229.5 1790 87.370000 1 2276 2 chr7A.!!$R2 2275
2 TraesCS7D01G202700 chr7B 123310540 123312852 2312 True 796.0 968 90.127333 1 2276 3 chr7B.!!$R2 2275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 879 0.177141 CCGCGGTAGGAAGATTGGAA 59.823 55.0 19.5 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2189 0.110238 CACGTGGCGTCATGAAAAGG 60.11 55.0 17.69 0.0 38.32 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.043673 AGATCTCTACGGTGGCACCC 61.044 60.000 30.03 13.70 33.75 4.61
109 114 1.652012 CGCCGGTTTCAGCTTTCAA 59.348 52.632 1.90 0.00 0.00 2.69
110 115 0.660300 CGCCGGTTTCAGCTTTCAAC 60.660 55.000 1.90 0.00 0.00 3.18
111 116 0.318699 GCCGGTTTCAGCTTTCAACC 60.319 55.000 1.90 8.01 37.24 3.77
112 117 1.028905 CCGGTTTCAGCTTTCAACCA 58.971 50.000 15.56 0.00 40.14 3.67
113 118 1.407258 CCGGTTTCAGCTTTCAACCAA 59.593 47.619 15.56 0.00 40.14 3.67
114 119 2.459934 CGGTTTCAGCTTTCAACCAAC 58.540 47.619 15.56 0.00 40.14 3.77
115 120 2.459934 GGTTTCAGCTTTCAACCAACG 58.540 47.619 11.92 0.00 39.93 4.10
116 121 2.098443 GGTTTCAGCTTTCAACCAACGA 59.902 45.455 11.92 0.00 39.93 3.85
253 274 5.124617 AGCAGTTTCTTGGAAATTAGCTAGC 59.875 40.000 6.62 6.62 0.00 3.42
254 275 5.124617 GCAGTTTCTTGGAAATTAGCTAGCT 59.875 40.000 23.12 23.12 0.00 3.32
255 276 6.316390 GCAGTTTCTTGGAAATTAGCTAGCTA 59.684 38.462 20.67 20.67 0.00 3.32
259 280 4.969359 TCTTGGAAATTAGCTAGCTAGGGT 59.031 41.667 23.03 12.72 0.00 4.34
260 281 4.689612 TGGAAATTAGCTAGCTAGGGTG 57.310 45.455 23.03 0.00 0.00 4.61
261 282 3.391296 TGGAAATTAGCTAGCTAGGGTGG 59.609 47.826 23.03 0.00 0.00 4.61
286 308 7.320399 GGACTCCGGATAAACATTGAAAATTT 58.680 34.615 3.57 0.00 0.00 1.82
299 321 7.452562 ACATTGAAAATTTAGGCCAAGTTCAT 58.547 30.769 5.01 0.00 0.00 2.57
368 391 0.884704 GACGACCCAAGCACACACAT 60.885 55.000 0.00 0.00 0.00 3.21
422 473 4.976224 AAATTAAGTACGCACAATCCCC 57.024 40.909 0.00 0.00 0.00 4.81
446 497 4.436242 TGAACGCTAGGTCAAACTAGAG 57.564 45.455 6.27 5.35 41.88 2.43
450 501 1.139256 GCTAGGTCAAACTAGAGCCCC 59.861 57.143 6.27 0.00 42.40 5.80
470 521 4.305956 CAAGTGCCTTGGCCCCCT 62.306 66.667 9.35 0.00 37.77 4.79
486 537 0.979187 CCCTAGGCGTTTCCCTGGTA 60.979 60.000 2.05 0.00 36.41 3.25
512 563 3.569250 AAACCACATTTCCACGTATGC 57.431 42.857 0.00 0.00 0.00 3.14
513 564 2.192664 ACCACATTTCCACGTATGCA 57.807 45.000 0.00 0.00 0.00 3.96
535 586 7.233632 TGCAAACATATATGGAGCTCCTTAAT 58.766 34.615 32.28 23.01 36.82 1.40
601 659 9.129209 GGTCTGTTACAAGAAAAATAGAAATGC 57.871 33.333 0.00 0.00 0.00 3.56
612 670 9.783081 AGAAAAATAGAAATGCATTTTTGGTCT 57.217 25.926 24.81 18.61 41.84 3.85
614 672 9.558396 AAAAATAGAAATGCATTTTTGGTCTCA 57.442 25.926 24.81 4.73 40.83 3.27
616 674 8.767478 AATAGAAATGCATTTTTGGTCTCAAG 57.233 30.769 24.81 0.00 33.98 3.02
617 675 4.992951 AGAAATGCATTTTTGGTCTCAAGC 59.007 37.500 24.81 8.32 33.98 4.01
618 676 4.339872 AATGCATTTTTGGTCTCAAGCA 57.660 36.364 5.99 0.00 35.70 3.91
619 677 3.815856 TGCATTTTTGGTCTCAAGCAA 57.184 38.095 0.00 0.00 40.96 3.91
620 678 3.456280 TGCATTTTTGGTCTCAAGCAAC 58.544 40.909 0.00 0.00 42.29 4.17
627 685 0.947244 GGTCTCAAGCAACACAGGTG 59.053 55.000 0.00 0.00 0.00 4.00
632 690 1.755959 TCAAGCAACACAGGTGCATTT 59.244 42.857 9.92 0.00 0.00 2.32
639 700 4.428209 CAACACAGGTGCATTTGTACAAA 58.572 39.130 22.58 22.58 32.02 2.83
646 707 6.257630 ACAGGTGCATTTGTACAAATCAAAAC 59.742 34.615 27.12 20.84 38.84 2.43
654 715 4.626042 TGTACAAATCAAAACATGTGGGC 58.374 39.130 0.00 0.00 0.00 5.36
657 718 2.988493 CAAATCAAAACATGTGGGCGAG 59.012 45.455 0.00 0.00 0.00 5.03
707 771 1.364626 GCATGCTCTGGTCAAGACGG 61.365 60.000 11.37 0.00 0.00 4.79
708 772 0.247460 CATGCTCTGGTCAAGACGGA 59.753 55.000 0.00 0.00 0.00 4.69
734 798 1.828331 GCTCGTGCCTTCGACGTTTT 61.828 55.000 0.00 0.00 38.04 2.43
759 823 2.127003 GCGCGCAGTTTGTTACCC 60.127 61.111 29.10 0.00 0.00 3.69
764 828 1.296056 CGCAGTTTGTTACCCCTCCG 61.296 60.000 0.00 0.00 0.00 4.63
810 874 3.912907 CCGCCGCGGTAGGAAGAT 61.913 66.667 29.71 0.00 42.73 2.40
811 875 2.106332 CGCCGCGGTAGGAAGATT 59.894 61.111 28.70 0.00 0.00 2.40
812 876 2.237751 CGCCGCGGTAGGAAGATTG 61.238 63.158 28.70 0.00 0.00 2.67
813 877 1.887707 GCCGCGGTAGGAAGATTGG 60.888 63.158 28.70 0.00 0.00 3.16
814 878 1.820581 CCGCGGTAGGAAGATTGGA 59.179 57.895 19.50 0.00 0.00 3.53
815 879 0.177141 CCGCGGTAGGAAGATTGGAA 59.823 55.000 19.50 0.00 0.00 3.53
816 880 1.287425 CGCGGTAGGAAGATTGGAAC 58.713 55.000 0.00 0.00 0.00 3.62
817 881 1.287425 GCGGTAGGAAGATTGGAACG 58.713 55.000 0.00 0.00 0.00 3.95
818 882 1.287425 CGGTAGGAAGATTGGAACGC 58.713 55.000 0.00 0.00 0.00 4.84
867 980 0.636733 GCGCGCATTGACTTTTCATG 59.363 50.000 29.10 0.00 0.00 3.07
960 1077 4.933064 GCTCCATCGACCGCCTCG 62.933 72.222 0.00 0.00 44.44 4.63
1027 1149 4.315803 ACTACCACCTCGTTGAAGAATTG 58.684 43.478 0.00 0.00 0.00 2.32
1047 1169 0.926155 CATCTCGACGACATTGCCAG 59.074 55.000 0.00 0.00 0.00 4.85
1129 1255 0.955919 GGAAGCCAAGGTTGACGAGG 60.956 60.000 0.00 0.00 0.00 4.63
1358 1490 2.203280 CCACCAACAGCCCGAACA 60.203 61.111 0.00 0.00 0.00 3.18
1359 1491 1.826054 CCACCAACAGCCCGAACAA 60.826 57.895 0.00 0.00 0.00 2.83
1362 1494 2.637025 CAACAGCCCGAACAACCG 59.363 61.111 0.00 0.00 0.00 4.44
1383 1515 3.885521 CCCGCCGTAGAGGTCGAC 61.886 72.222 7.13 7.13 43.70 4.20
1424 1559 2.347490 CTCCACGACCAACCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
1440 1583 0.321671 CCTGCTCTCTCGGGTTCAAA 59.678 55.000 0.00 0.00 0.00 2.69
1450 1593 4.989044 TCTCGGGTTCAAACTTGTTTTTC 58.011 39.130 0.00 0.00 0.00 2.29
1459 1602 4.022242 TCAAACTTGTTTTTCACGGACCAA 60.022 37.500 0.00 0.00 0.00 3.67
1515 1687 5.501156 CATGTTCTTTTTCCCTAGCTAGGT 58.499 41.667 33.00 11.55 42.03 3.08
1516 1688 6.650120 CATGTTCTTTTTCCCTAGCTAGGTA 58.350 40.000 33.00 19.57 42.03 3.08
1517 1689 6.295719 TGTTCTTTTTCCCTAGCTAGGTAG 57.704 41.667 33.00 21.31 42.03 3.18
1518 1690 5.189145 TGTTCTTTTTCCCTAGCTAGGTAGG 59.811 44.000 32.59 32.59 42.03 3.18
1519 1691 3.710165 TCTTTTTCCCTAGCTAGGTAGGC 59.290 47.826 33.67 2.50 42.03 3.93
1520 1692 2.098618 TTTCCCTAGCTAGGTAGGCC 57.901 55.000 33.67 0.00 42.03 5.19
1521 1693 0.178970 TTCCCTAGCTAGGTAGGCCG 60.179 60.000 33.67 23.95 42.03 6.13
1522 1694 1.606889 CCCTAGCTAGGTAGGCCGG 60.607 68.421 33.67 20.89 42.03 6.13
1523 1695 2.276853 CCTAGCTAGGTAGGCCGGC 61.277 68.421 29.96 21.18 38.69 6.13
1524 1696 2.203596 TAGCTAGGTAGGCCGGCC 60.204 66.667 39.29 39.29 40.50 6.13
1527 1699 3.603671 CTAGGTAGGCCGGCCGAC 61.604 72.222 41.31 41.31 41.95 4.79
1528 1700 4.133373 TAGGTAGGCCGGCCGACT 62.133 66.667 44.27 37.92 40.77 4.18
1529 1701 2.687418 CTAGGTAGGCCGGCCGACTA 62.687 65.000 44.27 37.20 40.77 2.59
1530 1702 2.687418 TAGGTAGGCCGGCCGACTAG 62.687 65.000 44.27 11.36 40.77 2.57
1531 1703 4.281947 GTAGGCCGGCCGACTAGC 62.282 72.222 41.38 22.50 41.95 3.42
1738 1918 7.495606 CAGCAACACATGTATATACCTTTCTCA 59.504 37.037 10.38 0.00 0.00 3.27
1739 1919 7.712639 AGCAACACATGTATATACCTTTCTCAG 59.287 37.037 10.38 0.00 0.00 3.35
1793 1991 4.488126 TCTTGACAAAGCACAGTTATGC 57.512 40.909 0.00 0.00 46.50 3.14
1808 2006 7.293745 CACAGTTATGCACTCTAACTCAAAAG 58.706 38.462 8.00 1.32 37.33 2.27
1814 2012 9.950680 TTATGCACTCTAACTCAAAAGAAAAAG 57.049 29.630 0.00 0.00 0.00 2.27
1816 2014 5.687730 GCACTCTAACTCAAAAGAAAAAGGC 59.312 40.000 0.00 0.00 0.00 4.35
1818 2016 6.914757 CACTCTAACTCAAAAGAAAAAGGCAG 59.085 38.462 0.00 0.00 0.00 4.85
1819 2017 6.603599 ACTCTAACTCAAAAGAAAAAGGCAGT 59.396 34.615 0.00 0.00 0.00 4.40
1820 2018 7.122799 ACTCTAACTCAAAAGAAAAAGGCAGTT 59.877 33.333 0.00 0.00 0.00 3.16
1834 2032 1.810151 GGCAGTTTTATGTGCTCCGAA 59.190 47.619 0.00 0.00 39.76 4.30
1842 2040 5.461032 TTTATGTGCTCCGAATTTGGTTT 57.539 34.783 11.68 0.00 0.00 3.27
1844 2042 2.302260 TGTGCTCCGAATTTGGTTTGA 58.698 42.857 11.68 0.00 0.00 2.69
1846 2044 2.552315 GTGCTCCGAATTTGGTTTGAGA 59.448 45.455 11.68 0.00 0.00 3.27
1849 2047 5.007034 TGCTCCGAATTTGGTTTGAGAATA 58.993 37.500 11.68 0.00 0.00 1.75
1850 2048 5.123820 TGCTCCGAATTTGGTTTGAGAATAG 59.876 40.000 11.68 0.00 0.00 1.73
1936 2142 1.153066 TTGCGTGGAAGTGGAAGCA 60.153 52.632 0.00 0.00 0.00 3.91
2005 2211 1.141645 TTTCATGACGCCACGTGTAC 58.858 50.000 15.65 5.22 41.37 2.90
2018 2224 1.153958 GTGTACGCCTACGGTGGTC 60.154 63.158 0.00 0.00 46.04 4.02
2068 2276 1.470098 CTCGGCTCCATTTTGTCCTTG 59.530 52.381 0.00 0.00 0.00 3.61
2213 2422 4.439700 CGCAGCCATCAATTCTCATCTTTT 60.440 41.667 0.00 0.00 0.00 2.27
2248 2458 5.347907 CGGTTTTTCAACTTAGAGCGTCTAT 59.652 40.000 0.00 0.00 32.90 1.98
2266 2476 4.098196 GTCTATAGCCGGACTCTTCAAACT 59.902 45.833 5.05 0.00 0.00 2.66
2276 2486 5.360144 CGGACTCTTCAAACTCCCTCTATAA 59.640 44.000 0.00 0.00 0.00 0.98
2277 2487 6.041069 CGGACTCTTCAAACTCCCTCTATAAT 59.959 42.308 0.00 0.00 0.00 1.28
2278 2488 7.213678 GGACTCTTCAAACTCCCTCTATAATG 58.786 42.308 0.00 0.00 0.00 1.90
2279 2489 7.070074 GGACTCTTCAAACTCCCTCTATAATGA 59.930 40.741 0.00 0.00 0.00 2.57
2280 2490 8.560124 ACTCTTCAAACTCCCTCTATAATGAT 57.440 34.615 0.00 0.00 0.00 2.45
2281 2491 9.661954 ACTCTTCAAACTCCCTCTATAATGATA 57.338 33.333 0.00 0.00 0.00 2.15
2301 2511 9.743057 AATGATAAAGAACAAAACGAATGAACA 57.257 25.926 0.00 0.00 0.00 3.18
2302 2512 8.781067 TGATAAAGAACAAAACGAATGAACAG 57.219 30.769 0.00 0.00 0.00 3.16
2303 2513 8.402472 TGATAAAGAACAAAACGAATGAACAGT 58.598 29.630 0.00 0.00 0.00 3.55
2304 2514 9.872757 GATAAAGAACAAAACGAATGAACAGTA 57.127 29.630 0.00 0.00 0.00 2.74
2315 2525 9.653287 AAACGAATGAACAGTAATAATCTCTCA 57.347 29.630 0.00 0.00 0.00 3.27
2316 2526 9.653287 AACGAATGAACAGTAATAATCTCTCAA 57.347 29.630 0.00 0.00 0.00 3.02
2317 2527 9.823647 ACGAATGAACAGTAATAATCTCTCAAT 57.176 29.630 0.00 0.00 0.00 2.57
2333 2543 9.491675 AATCTCTCAATTACTGATGATGATGTC 57.508 33.333 0.00 0.00 32.14 3.06
2334 2544 7.440198 TCTCTCAATTACTGATGATGATGTCC 58.560 38.462 0.00 0.00 32.14 4.02
2335 2545 7.289549 TCTCTCAATTACTGATGATGATGTCCT 59.710 37.037 0.00 0.00 32.14 3.85
2336 2546 7.799081 TCTCAATTACTGATGATGATGTCCTT 58.201 34.615 0.00 0.00 32.14 3.36
2337 2547 8.927411 TCTCAATTACTGATGATGATGTCCTTA 58.073 33.333 0.00 0.00 32.14 2.69
2338 2548 8.893219 TCAATTACTGATGATGATGTCCTTAC 57.107 34.615 0.00 0.00 0.00 2.34
2339 2549 8.485392 TCAATTACTGATGATGATGTCCTTACA 58.515 33.333 0.00 0.00 40.69 2.41
2340 2550 9.112725 CAATTACTGATGATGATGTCCTTACAA 57.887 33.333 0.00 0.00 39.58 2.41
2341 2551 9.685276 AATTACTGATGATGATGTCCTTACAAA 57.315 29.630 0.00 0.00 39.58 2.83
2342 2552 9.685276 ATTACTGATGATGATGTCCTTACAAAA 57.315 29.630 0.00 0.00 39.58 2.44
2343 2553 9.685276 TTACTGATGATGATGTCCTTACAAAAT 57.315 29.630 0.00 0.00 39.58 1.82
2344 2554 8.585471 ACTGATGATGATGTCCTTACAAAATT 57.415 30.769 0.00 0.00 39.58 1.82
2345 2555 9.028284 ACTGATGATGATGTCCTTACAAAATTT 57.972 29.630 0.00 0.00 39.58 1.82
2353 2563 9.362151 TGATGTCCTTACAAAATTTATATCCCC 57.638 33.333 0.00 0.00 39.58 4.81
2354 2564 8.721133 ATGTCCTTACAAAATTTATATCCCCC 57.279 34.615 0.00 0.00 39.58 5.40
2355 2565 6.773685 TGTCCTTACAAAATTTATATCCCCCG 59.226 38.462 0.00 0.00 30.91 5.73
2356 2566 6.999871 GTCCTTACAAAATTTATATCCCCCGA 59.000 38.462 0.00 0.00 0.00 5.14
2357 2567 7.503230 GTCCTTACAAAATTTATATCCCCCGAA 59.497 37.037 0.00 0.00 0.00 4.30
2358 2568 7.722285 TCCTTACAAAATTTATATCCCCCGAAG 59.278 37.037 0.00 0.00 0.00 3.79
2374 2584 2.743938 CGAAGGGATACATCTGGAACG 58.256 52.381 0.00 0.00 39.74 3.95
2375 2585 2.361119 CGAAGGGATACATCTGGAACGA 59.639 50.000 0.00 0.00 39.74 3.85
2376 2586 3.718815 GAAGGGATACATCTGGAACGAC 58.281 50.000 0.00 0.00 39.74 4.34
2377 2587 1.681793 AGGGATACATCTGGAACGACG 59.318 52.381 0.00 0.00 39.74 5.12
2378 2588 1.407979 GGGATACATCTGGAACGACGT 59.592 52.381 0.00 0.00 39.74 4.34
2379 2589 2.460918 GGATACATCTGGAACGACGTG 58.539 52.381 0.00 0.00 0.00 4.49
2380 2590 2.159282 GGATACATCTGGAACGACGTGT 60.159 50.000 0.00 0.00 0.00 4.49
2381 2591 3.508762 GATACATCTGGAACGACGTGTT 58.491 45.455 0.00 0.00 45.61 3.32
2391 2601 2.582728 ACGACGTGTTCCTTACAACA 57.417 45.000 0.00 0.00 38.80 3.33
2392 2602 2.466846 ACGACGTGTTCCTTACAACAG 58.533 47.619 0.00 0.00 38.80 3.16
2393 2603 1.790623 CGACGTGTTCCTTACAACAGG 59.209 52.381 0.00 4.85 44.27 4.00
2394 2604 1.529865 GACGTGTTCCTTACAACAGGC 59.470 52.381 0.00 0.00 43.09 4.85
2395 2605 1.134340 ACGTGTTCCTTACAACAGGCA 60.134 47.619 6.05 0.00 43.09 4.75
2396 2606 1.531149 CGTGTTCCTTACAACAGGCAG 59.469 52.381 0.00 0.00 38.80 4.85
2397 2607 1.880027 GTGTTCCTTACAACAGGCAGG 59.120 52.381 0.00 0.00 38.80 4.85
2398 2608 1.771854 TGTTCCTTACAACAGGCAGGA 59.228 47.619 0.00 0.00 32.64 3.86
2399 2609 2.224523 TGTTCCTTACAACAGGCAGGAG 60.225 50.000 0.00 0.00 36.76 3.69
2400 2610 2.024176 TCCTTACAACAGGCAGGAGA 57.976 50.000 0.00 0.00 33.35 3.71
2401 2611 1.902508 TCCTTACAACAGGCAGGAGAG 59.097 52.381 0.00 0.00 33.35 3.20
2402 2612 1.065854 CCTTACAACAGGCAGGAGAGG 60.066 57.143 0.00 0.00 0.00 3.69
2403 2613 0.984230 TTACAACAGGCAGGAGAGGG 59.016 55.000 0.00 0.00 0.00 4.30
2404 2614 0.909610 TACAACAGGCAGGAGAGGGG 60.910 60.000 0.00 0.00 0.00 4.79
2405 2615 2.612115 AACAGGCAGGAGAGGGGG 60.612 66.667 0.00 0.00 0.00 5.40
2406 2616 3.194025 AACAGGCAGGAGAGGGGGA 62.194 63.158 0.00 0.00 0.00 4.81
2407 2617 3.086600 CAGGCAGGAGAGGGGGAC 61.087 72.222 0.00 0.00 0.00 4.46
2408 2618 4.787280 AGGCAGGAGAGGGGGACG 62.787 72.222 0.00 0.00 0.00 4.79
2418 2628 4.503314 GGGGGACGCGACGGTTAG 62.503 72.222 15.93 0.00 0.00 2.34
2420 2630 4.424566 GGGACGCGACGGTTAGCA 62.425 66.667 15.93 0.00 0.00 3.49
2421 2631 3.177249 GGACGCGACGGTTAGCAC 61.177 66.667 15.93 0.00 0.00 4.40
2422 2632 3.530104 GACGCGACGGTTAGCACG 61.530 66.667 15.93 0.00 37.36 5.34
2424 2634 2.202336 CGCGACGGTTAGCACGTA 60.202 61.111 0.00 0.00 45.68 3.57
2425 2635 2.491271 CGCGACGGTTAGCACGTAC 61.491 63.158 0.00 0.00 45.68 3.67
2426 2636 1.154150 GCGACGGTTAGCACGTACT 60.154 57.895 0.00 0.00 45.68 2.73
2427 2637 1.400990 GCGACGGTTAGCACGTACTG 61.401 60.000 0.00 0.00 45.68 2.74
2428 2638 0.166597 CGACGGTTAGCACGTACTGA 59.833 55.000 0.00 0.00 45.68 3.41
2429 2639 1.611043 GACGGTTAGCACGTACTGAC 58.389 55.000 2.14 2.14 45.68 3.51
2430 2640 0.242017 ACGGTTAGCACGTACTGACC 59.758 55.000 17.68 17.68 43.60 4.02
2431 2641 3.025866 GGTTAGCACGTACTGACCG 57.974 57.895 13.44 0.00 36.69 4.79
2432 2642 1.074872 GGTTAGCACGTACTGACCGC 61.075 60.000 13.44 0.00 36.69 5.68
2433 2643 0.387622 GTTAGCACGTACTGACCGCA 60.388 55.000 0.00 0.00 0.00 5.69
2434 2644 0.387622 TTAGCACGTACTGACCGCAC 60.388 55.000 0.00 0.00 0.00 5.34
2435 2645 2.517391 TAGCACGTACTGACCGCACG 62.517 60.000 0.00 0.00 41.32 5.34
2437 2647 1.659335 CACGTACTGACCGCACGTT 60.659 57.895 0.00 0.00 45.93 3.99
2438 2648 1.066257 ACGTACTGACCGCACGTTT 59.934 52.632 0.00 0.00 45.93 3.60
2439 2649 1.210545 ACGTACTGACCGCACGTTTG 61.211 55.000 0.00 0.00 45.93 2.93
2440 2650 1.210545 CGTACTGACCGCACGTTTGT 61.211 55.000 0.00 0.00 0.00 2.83
2441 2651 0.932399 GTACTGACCGCACGTTTGTT 59.068 50.000 0.00 0.00 0.00 2.83
2442 2652 2.126467 GTACTGACCGCACGTTTGTTA 58.874 47.619 0.00 0.00 0.00 2.41
2443 2653 0.932399 ACTGACCGCACGTTTGTTAC 59.068 50.000 0.00 0.00 0.00 2.50
2444 2654 0.931702 CTGACCGCACGTTTGTTACA 59.068 50.000 0.00 0.00 0.00 2.41
2445 2655 1.328069 CTGACCGCACGTTTGTTACAA 59.672 47.619 0.00 0.00 0.00 2.41
2446 2656 1.736126 TGACCGCACGTTTGTTACAAA 59.264 42.857 6.41 6.41 0.00 2.83
2447 2657 2.161012 TGACCGCACGTTTGTTACAAAA 59.839 40.909 12.37 0.00 0.00 2.44
2448 2658 2.779471 GACCGCACGTTTGTTACAAAAG 59.221 45.455 19.04 19.04 0.00 2.27
2449 2659 2.113289 CCGCACGTTTGTTACAAAAGG 58.887 47.619 22.97 15.57 0.00 3.11
2450 2660 2.223294 CCGCACGTTTGTTACAAAAGGA 60.223 45.455 22.97 0.00 0.00 3.36
2451 2661 3.033185 CGCACGTTTGTTACAAAAGGAG 58.967 45.455 22.97 16.93 0.00 3.69
2452 2662 3.242478 CGCACGTTTGTTACAAAAGGAGA 60.242 43.478 22.97 0.00 0.00 3.71
2453 2663 4.553938 CGCACGTTTGTTACAAAAGGAGAT 60.554 41.667 22.97 4.26 0.00 2.75
2454 2664 5.278604 GCACGTTTGTTACAAAAGGAGATT 58.721 37.500 22.97 3.94 0.00 2.40
2455 2665 6.432107 GCACGTTTGTTACAAAAGGAGATTA 58.568 36.000 22.97 0.00 0.00 1.75
2456 2666 7.081976 GCACGTTTGTTACAAAAGGAGATTAT 58.918 34.615 22.97 2.72 0.00 1.28
2457 2667 7.270579 GCACGTTTGTTACAAAAGGAGATTATC 59.729 37.037 22.97 3.87 0.00 1.75
2494 2704 8.721133 ACATAATTAATTCCTAACATTCCCCC 57.279 34.615 3.39 0.00 0.00 5.40
2495 2705 8.519597 ACATAATTAATTCCTAACATTCCCCCT 58.480 33.333 3.39 0.00 0.00 4.79
2499 2709 9.601810 AATTAATTCCTAACATTCCCCCTAATC 57.398 33.333 0.00 0.00 0.00 1.75
2500 2710 6.865651 AATTCCTAACATTCCCCCTAATCT 57.134 37.500 0.00 0.00 0.00 2.40
2501 2711 5.906772 TTCCTAACATTCCCCCTAATCTC 57.093 43.478 0.00 0.00 0.00 2.75
2502 2712 4.240323 TCCTAACATTCCCCCTAATCTCC 58.760 47.826 0.00 0.00 0.00 3.71
2503 2713 4.077387 TCCTAACATTCCCCCTAATCTCCT 60.077 45.833 0.00 0.00 0.00 3.69
2504 2714 4.287326 CCTAACATTCCCCCTAATCTCCTC 59.713 50.000 0.00 0.00 0.00 3.71
2505 2715 3.438131 ACATTCCCCCTAATCTCCTCA 57.562 47.619 0.00 0.00 0.00 3.86
2506 2716 3.959920 ACATTCCCCCTAATCTCCTCAT 58.040 45.455 0.00 0.00 0.00 2.90
2507 2717 4.319515 ACATTCCCCCTAATCTCCTCATT 58.680 43.478 0.00 0.00 0.00 2.57
2508 2718 4.105377 ACATTCCCCCTAATCTCCTCATTG 59.895 45.833 0.00 0.00 0.00 2.82
2509 2719 3.724966 TCCCCCTAATCTCCTCATTGA 57.275 47.619 0.00 0.00 0.00 2.57
2510 2720 3.318313 TCCCCCTAATCTCCTCATTGAC 58.682 50.000 0.00 0.00 0.00 3.18
2511 2721 3.051032 TCCCCCTAATCTCCTCATTGACT 60.051 47.826 0.00 0.00 0.00 3.41
2512 2722 4.172041 TCCCCCTAATCTCCTCATTGACTA 59.828 45.833 0.00 0.00 0.00 2.59
2513 2723 5.097234 CCCCCTAATCTCCTCATTGACTAT 58.903 45.833 0.00 0.00 0.00 2.12
2514 2724 6.047960 TCCCCCTAATCTCCTCATTGACTATA 59.952 42.308 0.00 0.00 0.00 1.31
2515 2725 6.905776 CCCCCTAATCTCCTCATTGACTATAT 59.094 42.308 0.00 0.00 0.00 0.86
2516 2726 8.068110 CCCCCTAATCTCCTCATTGACTATATA 58.932 40.741 0.00 0.00 0.00 0.86
2517 2727 9.142014 CCCCTAATCTCCTCATTGACTATATAG 57.858 40.741 8.27 8.27 0.00 1.31
2518 2728 9.928618 CCCTAATCTCCTCATTGACTATATAGA 57.071 37.037 16.79 0.00 0.00 1.98
2541 2751 7.490000 AGAATCATCATCTTGAAAAATGCTCC 58.510 34.615 0.00 0.00 0.00 4.70
2542 2752 7.342284 AGAATCATCATCTTGAAAAATGCTCCT 59.658 33.333 0.00 0.00 0.00 3.69
2543 2753 6.446781 TCATCATCTTGAAAAATGCTCCTC 57.553 37.500 0.00 0.00 0.00 3.71
2544 2754 5.359009 TCATCATCTTGAAAAATGCTCCTCC 59.641 40.000 0.00 0.00 0.00 4.30
2545 2755 4.665451 TCATCTTGAAAAATGCTCCTCCA 58.335 39.130 0.00 0.00 0.00 3.86
2546 2756 5.078949 TCATCTTGAAAAATGCTCCTCCAA 58.921 37.500 0.00 0.00 0.00 3.53
2547 2757 5.539574 TCATCTTGAAAAATGCTCCTCCAAA 59.460 36.000 0.00 0.00 0.00 3.28
2548 2758 5.867903 TCTTGAAAAATGCTCCTCCAAAA 57.132 34.783 0.00 0.00 0.00 2.44
2549 2759 6.232581 TCTTGAAAAATGCTCCTCCAAAAA 57.767 33.333 0.00 0.00 0.00 1.94
2550 2760 6.048509 TCTTGAAAAATGCTCCTCCAAAAAC 58.951 36.000 0.00 0.00 0.00 2.43
2551 2761 4.702831 TGAAAAATGCTCCTCCAAAAACC 58.297 39.130 0.00 0.00 0.00 3.27
2552 2762 3.769739 AAAATGCTCCTCCAAAAACCC 57.230 42.857 0.00 0.00 0.00 4.11
2553 2763 2.702270 AATGCTCCTCCAAAAACCCT 57.298 45.000 0.00 0.00 0.00 4.34
2554 2764 1.928868 ATGCTCCTCCAAAAACCCTG 58.071 50.000 0.00 0.00 0.00 4.45
2555 2765 0.555769 TGCTCCTCCAAAAACCCTGT 59.444 50.000 0.00 0.00 0.00 4.00
2556 2766 0.961753 GCTCCTCCAAAAACCCTGTG 59.038 55.000 0.00 0.00 0.00 3.66
2557 2767 1.620822 CTCCTCCAAAAACCCTGTGG 58.379 55.000 0.00 0.00 37.80 4.17
2600 2810 6.220726 ACATAATATGCCACCAAAAACTCC 57.779 37.500 0.00 0.00 0.00 3.85
2601 2811 5.957774 ACATAATATGCCACCAAAAACTCCT 59.042 36.000 0.00 0.00 0.00 3.69
2602 2812 6.440328 ACATAATATGCCACCAAAAACTCCTT 59.560 34.615 0.00 0.00 0.00 3.36
2603 2813 5.823861 AATATGCCACCAAAAACTCCTTT 57.176 34.783 0.00 0.00 0.00 3.11
2604 2814 3.751479 ATGCCACCAAAAACTCCTTTC 57.249 42.857 0.00 0.00 0.00 2.62
2605 2815 2.461695 TGCCACCAAAAACTCCTTTCA 58.538 42.857 0.00 0.00 0.00 2.69
2606 2816 2.834549 TGCCACCAAAAACTCCTTTCAA 59.165 40.909 0.00 0.00 0.00 2.69
2607 2817 3.261897 TGCCACCAAAAACTCCTTTCAAA 59.738 39.130 0.00 0.00 0.00 2.69
2608 2818 4.257731 GCCACCAAAAACTCCTTTCAAAA 58.742 39.130 0.00 0.00 0.00 2.44
2609 2819 4.697828 GCCACCAAAAACTCCTTTCAAAAA 59.302 37.500 0.00 0.00 0.00 1.94
2610 2820 5.391523 GCCACCAAAAACTCCTTTCAAAAAC 60.392 40.000 0.00 0.00 0.00 2.43
2611 2821 5.123186 CCACCAAAAACTCCTTTCAAAAACC 59.877 40.000 0.00 0.00 0.00 3.27
2612 2822 5.123186 CACCAAAAACTCCTTTCAAAAACCC 59.877 40.000 0.00 0.00 0.00 4.11
2613 2823 5.221945 ACCAAAAACTCCTTTCAAAAACCCA 60.222 36.000 0.00 0.00 0.00 4.51
2614 2824 5.353956 CCAAAAACTCCTTTCAAAAACCCAG 59.646 40.000 0.00 0.00 0.00 4.45
2615 2825 5.755409 AAAACTCCTTTCAAAAACCCAGT 57.245 34.783 0.00 0.00 0.00 4.00
2616 2826 4.736126 AACTCCTTTCAAAAACCCAGTG 57.264 40.909 0.00 0.00 0.00 3.66
2617 2827 3.031013 ACTCCTTTCAAAAACCCAGTGG 58.969 45.455 0.63 0.63 37.80 4.00
2630 2840 2.656947 CCAGTGGGAAAACAAGGAGA 57.343 50.000 0.00 0.00 35.59 3.71
2631 2841 2.944129 CCAGTGGGAAAACAAGGAGAA 58.056 47.619 0.00 0.00 35.59 2.87
2632 2842 3.295973 CCAGTGGGAAAACAAGGAGAAA 58.704 45.455 0.00 0.00 35.59 2.52
2633 2843 3.704061 CCAGTGGGAAAACAAGGAGAAAA 59.296 43.478 0.00 0.00 35.59 2.29
2634 2844 4.441495 CCAGTGGGAAAACAAGGAGAAAAC 60.441 45.833 0.00 0.00 35.59 2.43
2635 2845 3.380320 AGTGGGAAAACAAGGAGAAAACG 59.620 43.478 0.00 0.00 0.00 3.60
2636 2846 3.379057 GTGGGAAAACAAGGAGAAAACGA 59.621 43.478 0.00 0.00 0.00 3.85
2637 2847 3.379057 TGGGAAAACAAGGAGAAAACGAC 59.621 43.478 0.00 0.00 0.00 4.34
2638 2848 3.379057 GGGAAAACAAGGAGAAAACGACA 59.621 43.478 0.00 0.00 0.00 4.35
2639 2849 4.037565 GGGAAAACAAGGAGAAAACGACAT 59.962 41.667 0.00 0.00 0.00 3.06
2640 2850 5.239963 GGGAAAACAAGGAGAAAACGACATA 59.760 40.000 0.00 0.00 0.00 2.29
2641 2851 6.072119 GGGAAAACAAGGAGAAAACGACATAT 60.072 38.462 0.00 0.00 0.00 1.78
2642 2852 7.368059 GGAAAACAAGGAGAAAACGACATATT 58.632 34.615 0.00 0.00 0.00 1.28
2643 2853 8.508875 GGAAAACAAGGAGAAAACGACATATTA 58.491 33.333 0.00 0.00 0.00 0.98
2686 2896 9.657419 ATTGCCTTATTAAAAACCTTTCATGAG 57.343 29.630 0.00 0.00 0.00 2.90
2687 2897 8.415950 TGCCTTATTAAAAACCTTTCATGAGA 57.584 30.769 0.00 0.00 0.00 3.27
2688 2898 8.865090 TGCCTTATTAAAAACCTTTCATGAGAA 58.135 29.630 0.00 0.00 0.00 2.87
2689 2899 9.705290 GCCTTATTAAAAACCTTTCATGAGAAA 57.295 29.630 0.00 0.00 41.26 2.52
2695 2905 9.541143 TTAAAAACCTTTCATGAGAAACCATTC 57.459 29.630 0.00 0.00 38.76 2.67
2696 2906 6.729690 AAACCTTTCATGAGAAACCATTCA 57.270 33.333 0.00 0.00 38.76 2.57
2697 2907 5.972107 ACCTTTCATGAGAAACCATTCAG 57.028 39.130 0.00 0.00 38.76 3.02
2698 2908 4.219288 ACCTTTCATGAGAAACCATTCAGC 59.781 41.667 0.00 0.00 38.76 4.26
2699 2909 4.219070 CCTTTCATGAGAAACCATTCAGCA 59.781 41.667 0.00 0.00 38.76 4.41
2700 2910 5.279106 CCTTTCATGAGAAACCATTCAGCAA 60.279 40.000 0.00 0.00 38.76 3.91
2701 2911 5.787953 TTCATGAGAAACCATTCAGCAAA 57.212 34.783 0.00 0.00 38.06 3.68
2702 2912 5.787953 TCATGAGAAACCATTCAGCAAAA 57.212 34.783 0.00 0.00 38.06 2.44
2703 2913 6.159299 TCATGAGAAACCATTCAGCAAAAA 57.841 33.333 0.00 0.00 38.06 1.94
2704 2914 5.984926 TCATGAGAAACCATTCAGCAAAAAC 59.015 36.000 0.00 0.00 38.06 2.43
2705 2915 5.596836 TGAGAAACCATTCAGCAAAAACT 57.403 34.783 0.00 0.00 38.06 2.66
2706 2916 5.591099 TGAGAAACCATTCAGCAAAAACTC 58.409 37.500 0.00 0.00 38.06 3.01
2707 2917 5.126869 TGAGAAACCATTCAGCAAAAACTCA 59.873 36.000 0.00 0.00 38.06 3.41
2708 2918 6.165700 AGAAACCATTCAGCAAAAACTCAT 57.834 33.333 0.00 0.00 38.06 2.90
2709 2919 7.014134 TGAGAAACCATTCAGCAAAAACTCATA 59.986 33.333 0.00 0.00 38.06 2.15
2710 2920 7.725251 AGAAACCATTCAGCAAAAACTCATAA 58.275 30.769 0.00 0.00 38.06 1.90
2711 2921 8.203485 AGAAACCATTCAGCAAAAACTCATAAA 58.797 29.630 0.00 0.00 38.06 1.40
2712 2922 7.951530 AACCATTCAGCAAAAACTCATAAAG 57.048 32.000 0.00 0.00 0.00 1.85
2713 2923 6.458210 ACCATTCAGCAAAAACTCATAAAGG 58.542 36.000 0.00 0.00 0.00 3.11
2714 2924 6.267471 ACCATTCAGCAAAAACTCATAAAGGA 59.733 34.615 0.00 0.00 0.00 3.36
2715 2925 7.153985 CCATTCAGCAAAAACTCATAAAGGAA 58.846 34.615 0.00 0.00 0.00 3.36
2716 2926 7.656948 CCATTCAGCAAAAACTCATAAAGGAAA 59.343 33.333 0.00 0.00 0.00 3.13
2717 2927 9.044150 CATTCAGCAAAAACTCATAAAGGAAAA 57.956 29.630 0.00 0.00 0.00 2.29
2718 2928 8.647143 TTCAGCAAAAACTCATAAAGGAAAAG 57.353 30.769 0.00 0.00 0.00 2.27
2719 2929 8.006298 TCAGCAAAAACTCATAAAGGAAAAGA 57.994 30.769 0.00 0.00 0.00 2.52
2720 2930 8.137437 TCAGCAAAAACTCATAAAGGAAAAGAG 58.863 33.333 0.00 0.00 0.00 2.85
2721 2931 7.922811 CAGCAAAAACTCATAAAGGAAAAGAGT 59.077 33.333 0.00 0.00 40.99 3.24
2722 2932 7.922811 AGCAAAAACTCATAAAGGAAAAGAGTG 59.077 33.333 0.00 0.00 39.33 3.51
2723 2933 7.306807 GCAAAAACTCATAAAGGAAAAGAGTGC 60.307 37.037 0.00 0.00 39.33 4.40
2724 2934 6.959639 AAACTCATAAAGGAAAAGAGTGCA 57.040 33.333 0.00 0.00 39.33 4.57
2725 2935 6.959639 AACTCATAAAGGAAAAGAGTGCAA 57.040 33.333 0.00 0.00 39.33 4.08
2726 2936 7.530426 AACTCATAAAGGAAAAGAGTGCAAT 57.470 32.000 0.00 0.00 39.33 3.56
2727 2937 8.635765 AACTCATAAAGGAAAAGAGTGCAATA 57.364 30.769 0.00 0.00 39.33 1.90
2728 2938 8.045176 ACTCATAAAGGAAAAGAGTGCAATAC 57.955 34.615 0.00 0.00 38.08 1.89
2729 2939 7.665559 ACTCATAAAGGAAAAGAGTGCAATACA 59.334 33.333 0.00 0.00 38.08 2.29
2730 2940 8.044060 TCATAAAGGAAAAGAGTGCAATACAG 57.956 34.615 0.00 0.00 0.00 2.74
2731 2941 7.882791 TCATAAAGGAAAAGAGTGCAATACAGA 59.117 33.333 0.00 0.00 0.00 3.41
2732 2942 6.959639 AAAGGAAAAGAGTGCAATACAGAA 57.040 33.333 0.00 0.00 0.00 3.02
2733 2943 6.566197 AAGGAAAAGAGTGCAATACAGAAG 57.434 37.500 0.00 0.00 0.00 2.85
2734 2944 5.869579 AGGAAAAGAGTGCAATACAGAAGA 58.130 37.500 0.00 0.00 0.00 2.87
2735 2945 6.479884 AGGAAAAGAGTGCAATACAGAAGAT 58.520 36.000 0.00 0.00 0.00 2.40
2736 2946 6.597280 AGGAAAAGAGTGCAATACAGAAGATC 59.403 38.462 0.00 0.00 0.00 2.75
2737 2947 6.183360 GGAAAAGAGTGCAATACAGAAGATCC 60.183 42.308 0.00 0.00 0.00 3.36
2738 2948 4.052159 AGAGTGCAATACAGAAGATCCG 57.948 45.455 0.00 0.00 0.00 4.18
2739 2949 3.701542 AGAGTGCAATACAGAAGATCCGA 59.298 43.478 0.00 0.00 0.00 4.55
2740 2950 4.160439 AGAGTGCAATACAGAAGATCCGAA 59.840 41.667 0.00 0.00 0.00 4.30
2741 2951 4.832248 AGTGCAATACAGAAGATCCGAAA 58.168 39.130 0.00 0.00 0.00 3.46
2742 2952 5.245531 AGTGCAATACAGAAGATCCGAAAA 58.754 37.500 0.00 0.00 0.00 2.29
2743 2953 5.882557 AGTGCAATACAGAAGATCCGAAAAT 59.117 36.000 0.00 0.00 0.00 1.82
2744 2954 6.037610 AGTGCAATACAGAAGATCCGAAAATC 59.962 38.462 0.00 0.00 0.00 2.17
2745 2955 6.037610 GTGCAATACAGAAGATCCGAAAATCT 59.962 38.462 0.00 0.00 37.61 2.40
2746 2956 6.258727 TGCAATACAGAAGATCCGAAAATCTC 59.741 38.462 0.00 0.00 34.90 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.762247 GCGTAGGGTGCCACCGTA 61.762 66.667 12.11 12.11 39.83 4.02
30 31 3.614159 ATTACATTGCTGCATGCGTAG 57.386 42.857 14.09 6.96 46.63 3.51
109 114 2.699954 CTTGTAGGAGCATTCGTTGGT 58.300 47.619 0.00 0.00 39.22 3.67
110 115 1.398390 GCTTGTAGGAGCATTCGTTGG 59.602 52.381 0.00 0.00 42.25 3.77
111 116 2.350522 AGCTTGTAGGAGCATTCGTTG 58.649 47.619 0.00 0.00 45.12 4.10
112 117 2.770164 AGCTTGTAGGAGCATTCGTT 57.230 45.000 0.00 0.00 45.12 3.85
113 118 2.101582 CCTAGCTTGTAGGAGCATTCGT 59.898 50.000 0.00 0.00 45.12 3.85
114 119 2.101582 ACCTAGCTTGTAGGAGCATTCG 59.898 50.000 8.06 0.00 45.12 3.34
115 120 3.828875 ACCTAGCTTGTAGGAGCATTC 57.171 47.619 8.06 0.00 45.12 2.67
116 121 3.070302 GCTACCTAGCTTGTAGGAGCATT 59.930 47.826 19.11 0.00 45.62 3.56
253 274 0.481567 TATCCGGAGTCCCACCCTAG 59.518 60.000 11.34 0.00 0.00 3.02
254 275 0.935942 TTATCCGGAGTCCCACCCTA 59.064 55.000 11.34 0.00 0.00 3.53
255 276 0.043637 TTTATCCGGAGTCCCACCCT 59.956 55.000 11.34 0.00 0.00 4.34
259 280 2.841266 TCAATGTTTATCCGGAGTCCCA 59.159 45.455 11.34 4.61 0.00 4.37
260 281 3.553828 TCAATGTTTATCCGGAGTCCC 57.446 47.619 11.34 0.00 0.00 4.46
261 282 5.890424 TTTTCAATGTTTATCCGGAGTCC 57.110 39.130 11.34 0.00 0.00 3.85
286 308 1.271856 TCCGTCATGAACTTGGCCTA 58.728 50.000 3.32 0.00 0.00 3.93
299 321 5.285651 GGTCAAAACATTTGAATTCCGTCA 58.714 37.500 7.07 0.00 0.00 4.35
360 382 1.204792 TGTCGTCGACAATGTGTGTG 58.795 50.000 25.13 0.00 41.96 3.82
422 473 2.132762 AGTTTGACCTAGCGTTCAACG 58.867 47.619 5.28 5.28 45.88 4.10
470 521 2.372837 ACTTTTACCAGGGAAACGCCTA 59.627 45.455 0.00 0.00 36.66 3.93
486 537 5.585820 ACGTGGAAATGTGGTTTACTTTT 57.414 34.783 0.00 0.00 38.80 2.27
568 626 6.844097 TTTTCTTGTAACAGACCCACTTTT 57.156 33.333 0.00 0.00 0.00 2.27
569 627 6.844097 TTTTTCTTGTAACAGACCCACTTT 57.156 33.333 0.00 0.00 0.00 2.66
570 628 7.996644 TCTATTTTTCTTGTAACAGACCCACTT 59.003 33.333 0.00 0.00 0.00 3.16
571 629 7.514721 TCTATTTTTCTTGTAACAGACCCACT 58.485 34.615 0.00 0.00 0.00 4.00
572 630 7.739498 TCTATTTTTCTTGTAACAGACCCAC 57.261 36.000 0.00 0.00 0.00 4.61
573 631 8.754991 TTTCTATTTTTCTTGTAACAGACCCA 57.245 30.769 0.00 0.00 0.00 4.51
574 632 9.626045 CATTTCTATTTTTCTTGTAACAGACCC 57.374 33.333 0.00 0.00 0.00 4.46
575 633 9.129209 GCATTTCTATTTTTCTTGTAACAGACC 57.871 33.333 0.00 0.00 0.00 3.85
601 659 4.431809 TGTGTTGCTTGAGACCAAAAATG 58.568 39.130 0.00 0.00 0.00 2.32
609 667 0.308993 GCACCTGTGTTGCTTGAGAC 59.691 55.000 0.00 0.00 0.00 3.36
611 669 0.956633 ATGCACCTGTGTTGCTTGAG 59.043 50.000 0.00 0.00 0.00 3.02
612 670 1.401761 AATGCACCTGTGTTGCTTGA 58.598 45.000 0.00 0.00 0.00 3.02
613 671 1.862201 CAAATGCACCTGTGTTGCTTG 59.138 47.619 0.00 0.00 0.00 4.01
614 672 1.481772 ACAAATGCACCTGTGTTGCTT 59.518 42.857 1.79 0.00 0.00 3.91
616 674 2.223688 TGTACAAATGCACCTGTGTTGC 60.224 45.455 11.80 0.00 0.00 4.17
617 675 3.706802 TGTACAAATGCACCTGTGTTG 57.293 42.857 11.80 2.55 0.00 3.33
618 676 4.727507 TTTGTACAAATGCACCTGTGTT 57.272 36.364 17.01 0.00 0.00 3.32
619 677 4.340666 TGATTTGTACAAATGCACCTGTGT 59.659 37.500 32.90 10.56 40.77 3.72
620 678 4.869215 TGATTTGTACAAATGCACCTGTG 58.131 39.130 32.90 0.00 40.77 3.66
627 685 7.070798 CCACATGTTTTGATTTGTACAAATGC 58.929 34.615 32.90 23.77 40.77 3.56
632 690 4.626042 GCCCACATGTTTTGATTTGTACA 58.374 39.130 0.00 0.00 0.00 2.90
639 700 1.812571 GACTCGCCCACATGTTTTGAT 59.187 47.619 0.00 0.00 0.00 2.57
646 707 0.179037 ATCCATGACTCGCCCACATG 60.179 55.000 0.00 0.00 40.39 3.21
654 715 8.333186 CAAATACATGCATATATCCATGACTCG 58.667 37.037 21.10 4.21 40.92 4.18
657 718 9.778993 GAACAAATACATGCATATATCCATGAC 57.221 33.333 21.10 1.70 40.92 3.06
739 803 4.711193 TAACAAACTGCGCGCGCG 62.711 61.111 45.73 45.73 45.51 6.86
799 863 1.287425 GCGTTCCAATCTTCCTACCG 58.713 55.000 0.00 0.00 0.00 4.02
867 980 3.624831 CTTTCGCGCGTCCCGTTTC 62.625 63.158 30.98 0.00 39.71 2.78
888 1005 2.179018 GGTTACGTGCGGCGACTA 59.821 61.111 12.98 0.00 44.77 2.59
960 1077 4.202131 GCCTATATATAACGCAGGGGAGAC 60.202 50.000 6.60 0.00 0.00 3.36
1027 1149 1.083806 TGGCAATGTCGTCGAGATGC 61.084 55.000 5.55 11.27 0.00 3.91
1047 1169 3.414700 CTGCACGACGCTGGGTTC 61.415 66.667 0.00 0.00 43.06 3.62
1178 1304 1.153429 GAAGTAGGAACGCCGCCAT 60.153 57.895 0.00 0.00 39.96 4.40
1424 1559 1.801178 CAAGTTTGAACCCGAGAGAGC 59.199 52.381 0.00 0.00 0.00 4.09
1440 1583 2.164827 GGTTGGTCCGTGAAAAACAAGT 59.835 45.455 0.00 0.00 0.00 3.16
1541 1713 3.081061 TCAATCAATCCAACCTTGTCGG 58.919 45.455 0.00 0.00 39.35 4.79
1542 1714 4.764679 TTCAATCAATCCAACCTTGTCG 57.235 40.909 0.00 0.00 0.00 4.35
1543 1715 5.801947 CGAATTCAATCAATCCAACCTTGTC 59.198 40.000 6.22 0.00 0.00 3.18
1547 1719 5.336690 CCAACGAATTCAATCAATCCAACCT 60.337 40.000 6.22 0.00 0.00 3.50
1659 1837 3.056107 TCAAACGAACAGATCCTACCAGG 60.056 47.826 0.00 0.00 36.46 4.45
1660 1838 4.188247 TCAAACGAACAGATCCTACCAG 57.812 45.455 0.00 0.00 0.00 4.00
1697 1877 0.602638 TGCTGGTACACTTTCGCAGG 60.603 55.000 0.00 0.00 0.00 4.85
1793 1991 6.795399 TGCCTTTTTCTTTTGAGTTAGAGTG 58.205 36.000 0.00 0.00 0.00 3.51
1808 2006 4.686091 GGAGCACATAAAACTGCCTTTTTC 59.314 41.667 0.00 0.00 33.84 2.29
1814 2012 1.448985 TCGGAGCACATAAAACTGCC 58.551 50.000 0.00 0.00 33.57 4.85
1816 2014 4.858692 CCAAATTCGGAGCACATAAAACTG 59.141 41.667 0.00 0.00 0.00 3.16
1818 2016 4.805219 ACCAAATTCGGAGCACATAAAAC 58.195 39.130 0.00 0.00 0.00 2.43
1819 2017 5.461032 AACCAAATTCGGAGCACATAAAA 57.539 34.783 0.00 0.00 0.00 1.52
1820 2018 5.010112 TCAAACCAAATTCGGAGCACATAAA 59.990 36.000 0.00 0.00 0.00 1.40
1834 2032 8.194769 ACGTTTTTGTCTATTCTCAAACCAAAT 58.805 29.630 0.00 0.00 34.05 2.32
1842 2040 5.050363 GCTGACACGTTTTTGTCTATTCTCA 60.050 40.000 5.61 0.00 45.34 3.27
1844 2042 5.050091 CAGCTGACACGTTTTTGTCTATTCT 60.050 40.000 8.42 0.00 45.34 2.40
1846 2044 4.574828 ACAGCTGACACGTTTTTGTCTATT 59.425 37.500 23.35 0.00 45.34 1.73
1849 2047 2.356135 ACAGCTGACACGTTTTTGTCT 58.644 42.857 23.35 0.00 45.34 3.41
1850 2048 2.825086 ACAGCTGACACGTTTTTGTC 57.175 45.000 23.35 0.00 45.34 3.18
1900 2106 0.801251 AAGTGCAATGAAGCTCTCGC 59.199 50.000 0.00 0.00 37.36 5.03
1901 2107 1.465354 GCAAGTGCAATGAAGCTCTCG 60.465 52.381 5.00 0.00 37.36 4.04
1936 2142 2.049526 TGACGCACGCGAATGTCT 60.050 55.556 19.66 0.00 42.83 3.41
1983 2189 0.110238 CACGTGGCGTCATGAAAAGG 60.110 55.000 17.69 0.00 38.32 3.11
2005 2211 2.830704 GGTTGAGACCACCGTAGGCG 62.831 65.000 0.00 0.00 45.09 5.52
2018 2224 4.377897 ACTACTTCCAAGAAACGGTTGAG 58.622 43.478 0.00 0.00 0.00 3.02
2068 2276 0.603975 AGCCAAACAAGCCGAGAGAC 60.604 55.000 0.00 0.00 0.00 3.36
2125 2333 1.880340 CAGCGGGAGATCGAACTGC 60.880 63.158 5.60 5.60 36.77 4.40
2228 2438 6.040878 GGCTATAGACGCTCTAAGTTGAAAA 58.959 40.000 3.21 0.00 31.96 2.29
2248 2458 1.549170 GGAGTTTGAAGAGTCCGGCTA 59.451 52.381 0.00 0.00 29.93 3.93
2276 2486 9.398170 CTGTTCATTCGTTTTGTTCTTTATCAT 57.602 29.630 0.00 0.00 0.00 2.45
2277 2487 8.402472 ACTGTTCATTCGTTTTGTTCTTTATCA 58.598 29.630 0.00 0.00 0.00 2.15
2278 2488 8.782533 ACTGTTCATTCGTTTTGTTCTTTATC 57.217 30.769 0.00 0.00 0.00 1.75
2289 2499 9.653287 TGAGAGATTATTACTGTTCATTCGTTT 57.347 29.630 0.00 0.00 0.00 3.60
2290 2500 9.653287 TTGAGAGATTATTACTGTTCATTCGTT 57.347 29.630 0.00 0.00 0.00 3.85
2291 2501 9.823647 ATTGAGAGATTATTACTGTTCATTCGT 57.176 29.630 0.00 0.00 0.00 3.85
2307 2517 9.491675 GACATCATCATCAGTAATTGAGAGATT 57.508 33.333 0.00 0.00 39.68 2.40
2308 2518 8.095792 GGACATCATCATCAGTAATTGAGAGAT 58.904 37.037 0.00 0.00 39.68 2.75
2309 2519 7.289549 AGGACATCATCATCAGTAATTGAGAGA 59.710 37.037 0.00 0.00 39.68 3.10
2310 2520 7.443477 AGGACATCATCATCAGTAATTGAGAG 58.557 38.462 0.00 0.00 39.68 3.20
2311 2521 7.370905 AGGACATCATCATCAGTAATTGAGA 57.629 36.000 0.00 0.00 39.68 3.27
2312 2522 8.986847 GTAAGGACATCATCATCAGTAATTGAG 58.013 37.037 0.00 0.00 39.68 3.02
2313 2523 8.485392 TGTAAGGACATCATCATCAGTAATTGA 58.515 33.333 0.00 0.00 40.85 2.57
2314 2524 8.667076 TGTAAGGACATCATCATCAGTAATTG 57.333 34.615 0.00 0.00 0.00 2.32
2315 2525 9.685276 TTTGTAAGGACATCATCATCAGTAATT 57.315 29.630 0.00 0.00 34.86 1.40
2316 2526 9.685276 TTTTGTAAGGACATCATCATCAGTAAT 57.315 29.630 0.00 0.00 34.86 1.89
2317 2527 9.685276 ATTTTGTAAGGACATCATCATCAGTAA 57.315 29.630 0.00 0.00 34.86 2.24
2318 2528 9.685276 AATTTTGTAAGGACATCATCATCAGTA 57.315 29.630 0.00 0.00 34.86 2.74
2319 2529 8.585471 AATTTTGTAAGGACATCATCATCAGT 57.415 30.769 0.00 0.00 34.86 3.41
2327 2537 9.362151 GGGGATATAAATTTTGTAAGGACATCA 57.638 33.333 0.00 0.00 34.86 3.07
2328 2538 8.803235 GGGGGATATAAATTTTGTAAGGACATC 58.197 37.037 0.00 0.00 34.86 3.06
2329 2539 7.450323 CGGGGGATATAAATTTTGTAAGGACAT 59.550 37.037 0.00 0.00 34.86 3.06
2330 2540 6.773685 CGGGGGATATAAATTTTGTAAGGACA 59.226 38.462 0.00 0.00 0.00 4.02
2331 2541 6.999871 TCGGGGGATATAAATTTTGTAAGGAC 59.000 38.462 0.00 0.00 0.00 3.85
2332 2542 7.151694 TCGGGGGATATAAATTTTGTAAGGA 57.848 36.000 0.00 0.00 0.00 3.36
2333 2543 7.039993 CCTTCGGGGGATATAAATTTTGTAAGG 60.040 40.741 0.00 0.00 0.00 2.69
2334 2544 7.882179 CCTTCGGGGGATATAAATTTTGTAAG 58.118 38.462 0.00 0.00 0.00 2.34
2335 2545 7.826918 CCTTCGGGGGATATAAATTTTGTAA 57.173 36.000 0.00 0.00 0.00 2.41
2352 2562 1.717032 TCCAGATGTATCCCTTCGGG 58.283 55.000 0.00 0.00 46.11 5.14
2353 2563 2.545952 CGTTCCAGATGTATCCCTTCGG 60.546 54.545 0.00 0.00 0.00 4.30
2354 2564 2.361119 TCGTTCCAGATGTATCCCTTCG 59.639 50.000 0.00 0.00 0.00 3.79
2355 2565 3.718815 GTCGTTCCAGATGTATCCCTTC 58.281 50.000 0.00 0.00 0.00 3.46
2356 2566 2.100916 CGTCGTTCCAGATGTATCCCTT 59.899 50.000 0.00 0.00 0.00 3.95
2357 2567 1.681793 CGTCGTTCCAGATGTATCCCT 59.318 52.381 0.00 0.00 0.00 4.20
2358 2568 1.407979 ACGTCGTTCCAGATGTATCCC 59.592 52.381 0.00 0.00 38.48 3.85
2359 2569 2.159282 ACACGTCGTTCCAGATGTATCC 60.159 50.000 0.00 0.00 38.22 2.59
2360 2570 3.146618 ACACGTCGTTCCAGATGTATC 57.853 47.619 0.00 0.00 38.22 2.24
2361 2571 3.587797 AACACGTCGTTCCAGATGTAT 57.412 42.857 0.00 0.00 38.22 2.29
2363 2573 3.980583 AACACGTCGTTCCAGATGT 57.019 47.368 0.00 0.00 40.68 3.06
2371 2581 2.861935 CTGTTGTAAGGAACACGTCGTT 59.138 45.455 0.00 3.52 41.86 3.85
2372 2582 2.466846 CTGTTGTAAGGAACACGTCGT 58.533 47.619 0.00 0.00 38.00 4.34
2373 2583 1.790623 CCTGTTGTAAGGAACACGTCG 59.209 52.381 0.00 0.00 40.02 5.12
2374 2584 1.529865 GCCTGTTGTAAGGAACACGTC 59.470 52.381 0.00 0.00 40.02 4.34
2375 2585 1.134340 TGCCTGTTGTAAGGAACACGT 60.134 47.619 0.00 0.00 40.02 4.49
2376 2586 1.531149 CTGCCTGTTGTAAGGAACACG 59.469 52.381 0.00 0.00 40.02 4.49
2377 2587 1.880027 CCTGCCTGTTGTAAGGAACAC 59.120 52.381 0.00 0.00 40.02 3.32
2378 2588 1.771854 TCCTGCCTGTTGTAAGGAACA 59.228 47.619 0.00 0.00 40.02 3.18
2379 2589 2.038557 TCTCCTGCCTGTTGTAAGGAAC 59.961 50.000 0.00 0.00 40.02 3.62
2380 2590 2.303022 CTCTCCTGCCTGTTGTAAGGAA 59.697 50.000 0.00 0.00 40.02 3.36
2381 2591 1.902508 CTCTCCTGCCTGTTGTAAGGA 59.097 52.381 0.00 0.00 40.02 3.36
2382 2592 1.065854 CCTCTCCTGCCTGTTGTAAGG 60.066 57.143 0.00 0.00 40.63 2.69
2383 2593 1.065854 CCCTCTCCTGCCTGTTGTAAG 60.066 57.143 0.00 0.00 0.00 2.34
2384 2594 0.984230 CCCTCTCCTGCCTGTTGTAA 59.016 55.000 0.00 0.00 0.00 2.41
2385 2595 0.909610 CCCCTCTCCTGCCTGTTGTA 60.910 60.000 0.00 0.00 0.00 2.41
2386 2596 2.227036 CCCCTCTCCTGCCTGTTGT 61.227 63.158 0.00 0.00 0.00 3.32
2387 2597 2.673523 CCCCTCTCCTGCCTGTTG 59.326 66.667 0.00 0.00 0.00 3.33
2388 2598 2.612115 CCCCCTCTCCTGCCTGTT 60.612 66.667 0.00 0.00 0.00 3.16
2389 2599 3.615811 TCCCCCTCTCCTGCCTGT 61.616 66.667 0.00 0.00 0.00 4.00
2390 2600 3.086600 GTCCCCCTCTCCTGCCTG 61.087 72.222 0.00 0.00 0.00 4.85
2391 2601 4.787280 CGTCCCCCTCTCCTGCCT 62.787 72.222 0.00 0.00 0.00 4.75
2401 2611 4.503314 CTAACCGTCGCGTCCCCC 62.503 72.222 5.77 0.00 0.00 5.40
2403 2613 4.424566 TGCTAACCGTCGCGTCCC 62.425 66.667 5.77 0.00 0.00 4.46
2404 2614 3.177249 GTGCTAACCGTCGCGTCC 61.177 66.667 5.77 0.00 0.00 4.79
2405 2615 2.832818 TACGTGCTAACCGTCGCGTC 62.833 60.000 5.77 0.00 44.75 5.19
2406 2616 4.332637 ACGTGCTAACCGTCGCGT 62.333 61.111 5.77 0.00 43.44 6.01
2407 2617 2.202336 TACGTGCTAACCGTCGCG 60.202 61.111 0.00 0.00 39.60 5.87
2408 2618 1.154150 AGTACGTGCTAACCGTCGC 60.154 57.895 3.62 0.00 39.60 5.19
2409 2619 0.166597 TCAGTACGTGCTAACCGTCG 59.833 55.000 5.64 0.00 39.60 5.12
2410 2620 1.611043 GTCAGTACGTGCTAACCGTC 58.389 55.000 5.64 0.00 39.60 4.79
2411 2621 0.242017 GGTCAGTACGTGCTAACCGT 59.758 55.000 10.47 0.00 42.06 4.83
2412 2622 0.795735 CGGTCAGTACGTGCTAACCG 60.796 60.000 29.98 29.98 42.97 4.44
2413 2623 1.074872 GCGGTCAGTACGTGCTAACC 61.075 60.000 15.58 15.58 0.00 2.85
2414 2624 0.387622 TGCGGTCAGTACGTGCTAAC 60.388 55.000 5.64 1.14 0.00 2.34
2415 2625 0.387622 GTGCGGTCAGTACGTGCTAA 60.388 55.000 5.64 0.00 0.00 3.09
2416 2626 1.210931 GTGCGGTCAGTACGTGCTA 59.789 57.895 5.64 0.00 0.00 3.49
2417 2627 2.049433 GTGCGGTCAGTACGTGCT 60.049 61.111 0.00 0.00 0.00 4.40
2422 2632 0.932399 AACAAACGTGCGGTCAGTAC 59.068 50.000 0.00 0.00 0.00 2.73
2423 2633 2.126467 GTAACAAACGTGCGGTCAGTA 58.874 47.619 0.00 0.00 0.00 2.74
2424 2634 0.932399 GTAACAAACGTGCGGTCAGT 59.068 50.000 0.00 0.00 0.00 3.41
2425 2635 0.931702 TGTAACAAACGTGCGGTCAG 59.068 50.000 0.00 0.00 0.00 3.51
2426 2636 1.366679 TTGTAACAAACGTGCGGTCA 58.633 45.000 0.00 0.00 0.00 4.02
2427 2637 2.455295 TTTGTAACAAACGTGCGGTC 57.545 45.000 0.00 0.00 0.00 4.79
2428 2638 2.478200 CCTTTTGTAACAAACGTGCGGT 60.478 45.455 0.00 0.00 0.00 5.68
2429 2639 2.113289 CCTTTTGTAACAAACGTGCGG 58.887 47.619 0.00 0.00 0.00 5.69
2430 2640 3.033185 CTCCTTTTGTAACAAACGTGCG 58.967 45.455 0.00 0.00 0.00 5.34
2431 2641 4.281525 TCTCCTTTTGTAACAAACGTGC 57.718 40.909 0.00 0.00 0.00 5.34
2432 2642 7.749126 GGATAATCTCCTTTTGTAACAAACGTG 59.251 37.037 0.00 0.00 41.29 4.49
2433 2643 7.446013 TGGATAATCTCCTTTTGTAACAAACGT 59.554 33.333 0.00 0.00 45.21 3.99
2434 2644 7.812648 TGGATAATCTCCTTTTGTAACAAACG 58.187 34.615 0.00 0.00 45.21 3.60
2468 2678 9.154632 GGGGGAATGTTAGGAATTAATTATGTT 57.845 33.333 0.00 0.00 0.00 2.71
2469 2679 8.519597 AGGGGGAATGTTAGGAATTAATTATGT 58.480 33.333 0.00 0.00 0.00 2.29
2470 2680 8.956446 AGGGGGAATGTTAGGAATTAATTATG 57.044 34.615 0.00 0.00 0.00 1.90
2473 2683 9.601810 GATTAGGGGGAATGTTAGGAATTAATT 57.398 33.333 0.00 0.00 0.00 1.40
2474 2684 8.970813 AGATTAGGGGGAATGTTAGGAATTAAT 58.029 33.333 0.00 0.00 0.00 1.40
2475 2685 8.358082 AGATTAGGGGGAATGTTAGGAATTAA 57.642 34.615 0.00 0.00 0.00 1.40
2476 2686 7.018249 GGAGATTAGGGGGAATGTTAGGAATTA 59.982 40.741 0.00 0.00 0.00 1.40
2477 2687 6.183361 GGAGATTAGGGGGAATGTTAGGAATT 60.183 42.308 0.00 0.00 0.00 2.17
2478 2688 5.313506 GGAGATTAGGGGGAATGTTAGGAAT 59.686 44.000 0.00 0.00 0.00 3.01
2479 2689 4.663592 GGAGATTAGGGGGAATGTTAGGAA 59.336 45.833 0.00 0.00 0.00 3.36
2480 2690 4.077387 AGGAGATTAGGGGGAATGTTAGGA 60.077 45.833 0.00 0.00 0.00 2.94
2481 2691 4.243643 AGGAGATTAGGGGGAATGTTAGG 58.756 47.826 0.00 0.00 0.00 2.69
2482 2692 4.907875 TGAGGAGATTAGGGGGAATGTTAG 59.092 45.833 0.00 0.00 0.00 2.34
2483 2693 4.903149 TGAGGAGATTAGGGGGAATGTTA 58.097 43.478 0.00 0.00 0.00 2.41
2484 2694 3.747852 TGAGGAGATTAGGGGGAATGTT 58.252 45.455 0.00 0.00 0.00 2.71
2485 2695 3.438131 TGAGGAGATTAGGGGGAATGT 57.562 47.619 0.00 0.00 0.00 2.71
2486 2696 4.352001 TCAATGAGGAGATTAGGGGGAATG 59.648 45.833 0.00 0.00 0.00 2.67
2487 2697 4.352298 GTCAATGAGGAGATTAGGGGGAAT 59.648 45.833 0.00 0.00 0.00 3.01
2488 2698 3.716872 GTCAATGAGGAGATTAGGGGGAA 59.283 47.826 0.00 0.00 0.00 3.97
2489 2699 3.051032 AGTCAATGAGGAGATTAGGGGGA 60.051 47.826 0.00 0.00 0.00 4.81
2490 2700 3.321950 AGTCAATGAGGAGATTAGGGGG 58.678 50.000 0.00 0.00 0.00 5.40
2491 2701 7.986553 ATATAGTCAATGAGGAGATTAGGGG 57.013 40.000 0.00 0.00 0.00 4.79
2492 2702 9.928618 TCTATATAGTCAATGAGGAGATTAGGG 57.071 37.037 9.58 0.00 0.00 3.53
2515 2725 8.627403 GGAGCATTTTTCAAGATGATGATTCTA 58.373 33.333 0.00 0.00 0.00 2.10
2516 2726 7.342284 AGGAGCATTTTTCAAGATGATGATTCT 59.658 33.333 0.00 0.00 0.00 2.40
2517 2727 7.490000 AGGAGCATTTTTCAAGATGATGATTC 58.510 34.615 0.00 0.00 0.00 2.52
2518 2728 7.417570 GGAGGAGCATTTTTCAAGATGATGATT 60.418 37.037 0.00 0.00 0.00 2.57
2519 2729 6.040616 GGAGGAGCATTTTTCAAGATGATGAT 59.959 38.462 0.00 0.00 0.00 2.45
2520 2730 5.359009 GGAGGAGCATTTTTCAAGATGATGA 59.641 40.000 0.00 0.00 0.00 2.92
2521 2731 5.126545 TGGAGGAGCATTTTTCAAGATGATG 59.873 40.000 0.00 0.00 0.00 3.07
2522 2732 5.266788 TGGAGGAGCATTTTTCAAGATGAT 58.733 37.500 0.00 0.00 0.00 2.45
2523 2733 4.665451 TGGAGGAGCATTTTTCAAGATGA 58.335 39.130 0.00 0.00 0.00 2.92
2524 2734 5.395682 TTGGAGGAGCATTTTTCAAGATG 57.604 39.130 0.00 0.00 0.00 2.90
2525 2735 6.423776 TTTTGGAGGAGCATTTTTCAAGAT 57.576 33.333 0.00 0.00 0.00 2.40
2526 2736 5.867903 TTTTGGAGGAGCATTTTTCAAGA 57.132 34.783 0.00 0.00 0.00 3.02
2527 2737 5.237127 GGTTTTTGGAGGAGCATTTTTCAAG 59.763 40.000 0.00 0.00 0.00 3.02
2528 2738 5.122519 GGTTTTTGGAGGAGCATTTTTCAA 58.877 37.500 0.00 0.00 0.00 2.69
2529 2739 4.444164 GGGTTTTTGGAGGAGCATTTTTCA 60.444 41.667 0.00 0.00 0.00 2.69
2530 2740 4.065088 GGGTTTTTGGAGGAGCATTTTTC 58.935 43.478 0.00 0.00 0.00 2.29
2531 2741 3.716353 AGGGTTTTTGGAGGAGCATTTTT 59.284 39.130 0.00 0.00 0.00 1.94
2532 2742 3.071457 CAGGGTTTTTGGAGGAGCATTTT 59.929 43.478 0.00 0.00 0.00 1.82
2533 2743 2.634453 CAGGGTTTTTGGAGGAGCATTT 59.366 45.455 0.00 0.00 0.00 2.32
2534 2744 2.250924 CAGGGTTTTTGGAGGAGCATT 58.749 47.619 0.00 0.00 0.00 3.56
2535 2745 1.147817 ACAGGGTTTTTGGAGGAGCAT 59.852 47.619 0.00 0.00 0.00 3.79
2536 2746 0.555769 ACAGGGTTTTTGGAGGAGCA 59.444 50.000 0.00 0.00 0.00 4.26
2537 2747 0.961753 CACAGGGTTTTTGGAGGAGC 59.038 55.000 0.00 0.00 0.00 4.70
2538 2748 1.620822 CCACAGGGTTTTTGGAGGAG 58.379 55.000 0.00 0.00 31.39 3.69
2539 2749 0.187361 CCCACAGGGTTTTTGGAGGA 59.813 55.000 0.00 0.00 38.25 3.71
2540 2750 0.187361 TCCCACAGGGTTTTTGGAGG 59.813 55.000 1.36 0.00 44.74 4.30
2541 2751 2.080654 TTCCCACAGGGTTTTTGGAG 57.919 50.000 1.36 0.00 44.74 3.86
2542 2752 2.552093 TTTCCCACAGGGTTTTTGGA 57.448 45.000 1.36 0.00 44.74 3.53
2543 2753 3.636153 TTTTTCCCACAGGGTTTTTGG 57.364 42.857 1.36 0.00 44.74 3.28
2544 2754 8.910351 TTTATATTTTTCCCACAGGGTTTTTG 57.090 30.769 1.36 0.00 44.74 2.44
2545 2755 8.939932 TCTTTATATTTTTCCCACAGGGTTTTT 58.060 29.630 1.36 0.00 44.74 1.94
2546 2756 8.499288 TCTTTATATTTTTCCCACAGGGTTTT 57.501 30.769 1.36 0.00 44.74 2.43
2547 2757 7.953493 TCTCTTTATATTTTTCCCACAGGGTTT 59.047 33.333 1.36 0.00 44.74 3.27
2548 2758 7.475299 TCTCTTTATATTTTTCCCACAGGGTT 58.525 34.615 1.36 0.00 44.74 4.11
2549 2759 7.039722 TCTCTTTATATTTTTCCCACAGGGT 57.960 36.000 1.36 0.00 44.74 4.34
2550 2760 9.813826 ATATCTCTTTATATTTTTCCCACAGGG 57.186 33.333 0.00 0.00 46.11 4.45
2574 2784 9.073475 GGAGTTTTTGGTGGCATATTATGTATA 57.927 33.333 5.60 0.00 0.00 1.47
2575 2785 7.784550 AGGAGTTTTTGGTGGCATATTATGTAT 59.215 33.333 5.60 0.00 0.00 2.29
2576 2786 7.122715 AGGAGTTTTTGGTGGCATATTATGTA 58.877 34.615 5.60 0.00 0.00 2.29
2577 2787 5.957774 AGGAGTTTTTGGTGGCATATTATGT 59.042 36.000 5.60 0.00 0.00 2.29
2578 2788 6.469782 AGGAGTTTTTGGTGGCATATTATG 57.530 37.500 0.00 0.00 0.00 1.90
2579 2789 7.180051 TGAAAGGAGTTTTTGGTGGCATATTAT 59.820 33.333 0.00 0.00 0.00 1.28
2580 2790 6.495181 TGAAAGGAGTTTTTGGTGGCATATTA 59.505 34.615 0.00 0.00 0.00 0.98
2581 2791 5.306678 TGAAAGGAGTTTTTGGTGGCATATT 59.693 36.000 0.00 0.00 0.00 1.28
2582 2792 4.837860 TGAAAGGAGTTTTTGGTGGCATAT 59.162 37.500 0.00 0.00 0.00 1.78
2583 2793 4.219115 TGAAAGGAGTTTTTGGTGGCATA 58.781 39.130 0.00 0.00 0.00 3.14
2584 2794 3.037549 TGAAAGGAGTTTTTGGTGGCAT 58.962 40.909 0.00 0.00 0.00 4.40
2585 2795 2.461695 TGAAAGGAGTTTTTGGTGGCA 58.538 42.857 0.00 0.00 0.00 4.92
2586 2796 3.535280 TTGAAAGGAGTTTTTGGTGGC 57.465 42.857 0.00 0.00 0.00 5.01
2587 2797 5.123186 GGTTTTTGAAAGGAGTTTTTGGTGG 59.877 40.000 0.00 0.00 0.00 4.61
2588 2798 5.123186 GGGTTTTTGAAAGGAGTTTTTGGTG 59.877 40.000 0.00 0.00 0.00 4.17
2589 2799 5.221945 TGGGTTTTTGAAAGGAGTTTTTGGT 60.222 36.000 0.00 0.00 0.00 3.67
2590 2800 5.249420 TGGGTTTTTGAAAGGAGTTTTTGG 58.751 37.500 0.00 0.00 0.00 3.28
2591 2801 5.937540 ACTGGGTTTTTGAAAGGAGTTTTTG 59.062 36.000 0.00 0.00 0.00 2.44
2592 2802 5.937540 CACTGGGTTTTTGAAAGGAGTTTTT 59.062 36.000 0.00 0.00 0.00 1.94
2593 2803 5.487433 CACTGGGTTTTTGAAAGGAGTTTT 58.513 37.500 0.00 0.00 0.00 2.43
2594 2804 4.081142 CCACTGGGTTTTTGAAAGGAGTTT 60.081 41.667 0.00 0.00 0.00 2.66
2595 2805 3.450817 CCACTGGGTTTTTGAAAGGAGTT 59.549 43.478 0.00 0.00 0.00 3.01
2596 2806 3.031013 CCACTGGGTTTTTGAAAGGAGT 58.969 45.455 0.00 0.00 0.00 3.85
2597 2807 2.365293 CCCACTGGGTTTTTGAAAGGAG 59.635 50.000 5.85 0.00 38.25 3.69
2598 2808 2.023888 TCCCACTGGGTTTTTGAAAGGA 60.024 45.455 14.25 0.00 44.74 3.36
2599 2809 2.393646 TCCCACTGGGTTTTTGAAAGG 58.606 47.619 14.25 0.00 44.74 3.11
2600 2810 4.479786 TTTCCCACTGGGTTTTTGAAAG 57.520 40.909 14.25 0.00 44.74 2.62
2601 2811 4.041691 TGTTTTCCCACTGGGTTTTTGAAA 59.958 37.500 14.25 3.32 44.74 2.69
2602 2812 3.583086 TGTTTTCCCACTGGGTTTTTGAA 59.417 39.130 14.25 0.00 44.74 2.69
2603 2813 3.173965 TGTTTTCCCACTGGGTTTTTGA 58.826 40.909 14.25 0.00 44.74 2.69
2604 2814 3.618690 TGTTTTCCCACTGGGTTTTTG 57.381 42.857 14.25 0.00 44.74 2.44
2605 2815 3.054728 CCTTGTTTTCCCACTGGGTTTTT 60.055 43.478 14.25 0.00 44.74 1.94
2606 2816 2.503765 CCTTGTTTTCCCACTGGGTTTT 59.496 45.455 14.25 0.00 44.74 2.43
2607 2817 2.115427 CCTTGTTTTCCCACTGGGTTT 58.885 47.619 14.25 0.00 44.74 3.27
2608 2818 1.289530 TCCTTGTTTTCCCACTGGGTT 59.710 47.619 14.25 0.00 44.74 4.11
2609 2819 0.930726 TCCTTGTTTTCCCACTGGGT 59.069 50.000 14.25 0.00 44.74 4.51
2610 2820 1.144913 TCTCCTTGTTTTCCCACTGGG 59.855 52.381 7.97 7.97 46.11 4.45
2611 2821 2.656947 TCTCCTTGTTTTCCCACTGG 57.343 50.000 0.00 0.00 0.00 4.00
2612 2822 4.682787 GTTTTCTCCTTGTTTTCCCACTG 58.317 43.478 0.00 0.00 0.00 3.66
2613 2823 3.380320 CGTTTTCTCCTTGTTTTCCCACT 59.620 43.478 0.00 0.00 0.00 4.00
2614 2824 3.379057 TCGTTTTCTCCTTGTTTTCCCAC 59.621 43.478 0.00 0.00 0.00 4.61
2615 2825 3.379057 GTCGTTTTCTCCTTGTTTTCCCA 59.621 43.478 0.00 0.00 0.00 4.37
2616 2826 3.379057 TGTCGTTTTCTCCTTGTTTTCCC 59.621 43.478 0.00 0.00 0.00 3.97
2617 2827 4.625972 TGTCGTTTTCTCCTTGTTTTCC 57.374 40.909 0.00 0.00 0.00 3.13
2660 2870 9.657419 CTCATGAAAGGTTTTTAATAAGGCAAT 57.343 29.630 0.00 0.00 0.00 3.56
2661 2871 8.865090 TCTCATGAAAGGTTTTTAATAAGGCAA 58.135 29.630 0.00 0.00 0.00 4.52
2662 2872 8.415950 TCTCATGAAAGGTTTTTAATAAGGCA 57.584 30.769 0.00 0.00 0.00 4.75
2663 2873 9.705290 TTTCTCATGAAAGGTTTTTAATAAGGC 57.295 29.630 0.00 0.00 37.27 4.35
2669 2879 9.541143 GAATGGTTTCTCATGAAAGGTTTTTAA 57.459 29.630 0.00 0.00 42.15 1.52
2670 2880 8.700051 TGAATGGTTTCTCATGAAAGGTTTTTA 58.300 29.630 0.00 0.00 42.15 1.52
2671 2881 7.563906 TGAATGGTTTCTCATGAAAGGTTTTT 58.436 30.769 0.00 0.00 42.15 1.94
2672 2882 7.123355 TGAATGGTTTCTCATGAAAGGTTTT 57.877 32.000 0.00 0.00 42.15 2.43
2673 2883 6.729690 TGAATGGTTTCTCATGAAAGGTTT 57.270 33.333 0.00 0.00 42.15 3.27
2674 2884 5.279156 GCTGAATGGTTTCTCATGAAAGGTT 60.279 40.000 0.00 0.00 42.15 3.50
2675 2885 4.219288 GCTGAATGGTTTCTCATGAAAGGT 59.781 41.667 0.00 0.00 42.15 3.50
2676 2886 4.219070 TGCTGAATGGTTTCTCATGAAAGG 59.781 41.667 0.00 0.00 42.15 3.11
2677 2887 5.381174 TGCTGAATGGTTTCTCATGAAAG 57.619 39.130 0.00 0.00 42.15 2.62
2678 2888 5.787953 TTGCTGAATGGTTTCTCATGAAA 57.212 34.783 0.00 0.00 39.59 2.69
2679 2889 5.787953 TTTGCTGAATGGTTTCTCATGAA 57.212 34.783 0.00 0.00 32.78 2.57
2680 2890 5.787953 TTTTGCTGAATGGTTTCTCATGA 57.212 34.783 0.00 0.00 32.78 3.07
2681 2891 5.987347 AGTTTTTGCTGAATGGTTTCTCATG 59.013 36.000 0.00 0.00 32.78 3.07
2682 2892 6.165700 AGTTTTTGCTGAATGGTTTCTCAT 57.834 33.333 0.00 0.00 32.78 2.90
2683 2893 5.126869 TGAGTTTTTGCTGAATGGTTTCTCA 59.873 36.000 0.00 0.00 32.78 3.27
2684 2894 5.591099 TGAGTTTTTGCTGAATGGTTTCTC 58.409 37.500 0.00 0.00 32.78 2.87
2685 2895 5.596836 TGAGTTTTTGCTGAATGGTTTCT 57.403 34.783 0.00 0.00 32.78 2.52
2686 2896 7.945033 TTATGAGTTTTTGCTGAATGGTTTC 57.055 32.000 0.00 0.00 0.00 2.78
2687 2897 7.442062 CCTTTATGAGTTTTTGCTGAATGGTTT 59.558 33.333 0.00 0.00 0.00 3.27
2688 2898 6.930722 CCTTTATGAGTTTTTGCTGAATGGTT 59.069 34.615 0.00 0.00 0.00 3.67
2689 2899 6.267471 TCCTTTATGAGTTTTTGCTGAATGGT 59.733 34.615 0.00 0.00 0.00 3.55
2690 2900 6.690530 TCCTTTATGAGTTTTTGCTGAATGG 58.309 36.000 0.00 0.00 0.00 3.16
2691 2901 8.592105 TTTCCTTTATGAGTTTTTGCTGAATG 57.408 30.769 0.00 0.00 0.00 2.67
2692 2902 9.264719 CTTTTCCTTTATGAGTTTTTGCTGAAT 57.735 29.630 0.00 0.00 0.00 2.57
2693 2903 8.474025 TCTTTTCCTTTATGAGTTTTTGCTGAA 58.526 29.630 0.00 0.00 0.00 3.02
2694 2904 8.006298 TCTTTTCCTTTATGAGTTTTTGCTGA 57.994 30.769 0.00 0.00 0.00 4.26
2695 2905 7.922811 ACTCTTTTCCTTTATGAGTTTTTGCTG 59.077 33.333 0.00 0.00 34.78 4.41
2696 2906 7.922811 CACTCTTTTCCTTTATGAGTTTTTGCT 59.077 33.333 0.00 0.00 36.05 3.91
2697 2907 7.306807 GCACTCTTTTCCTTTATGAGTTTTTGC 60.307 37.037 0.00 0.00 36.05 3.68
2698 2908 7.706179 TGCACTCTTTTCCTTTATGAGTTTTTG 59.294 33.333 0.00 0.00 36.05 2.44
2699 2909 7.781056 TGCACTCTTTTCCTTTATGAGTTTTT 58.219 30.769 0.00 0.00 36.05 1.94
2700 2910 7.346751 TGCACTCTTTTCCTTTATGAGTTTT 57.653 32.000 0.00 0.00 36.05 2.43
2701 2911 6.959639 TGCACTCTTTTCCTTTATGAGTTT 57.040 33.333 0.00 0.00 36.05 2.66
2702 2912 6.959639 TTGCACTCTTTTCCTTTATGAGTT 57.040 33.333 0.00 0.00 36.05 3.01
2703 2913 7.665559 TGTATTGCACTCTTTTCCTTTATGAGT 59.334 33.333 0.00 0.00 38.36 3.41
2704 2914 8.044060 TGTATTGCACTCTTTTCCTTTATGAG 57.956 34.615 0.00 0.00 0.00 2.90
2705 2915 7.882791 TCTGTATTGCACTCTTTTCCTTTATGA 59.117 33.333 0.00 0.00 0.00 2.15
2706 2916 8.044060 TCTGTATTGCACTCTTTTCCTTTATG 57.956 34.615 0.00 0.00 0.00 1.90
2707 2917 8.635765 TTCTGTATTGCACTCTTTTCCTTTAT 57.364 30.769 0.00 0.00 0.00 1.40
2708 2918 7.936847 TCTTCTGTATTGCACTCTTTTCCTTTA 59.063 33.333 0.00 0.00 0.00 1.85
2709 2919 6.772716 TCTTCTGTATTGCACTCTTTTCCTTT 59.227 34.615 0.00 0.00 0.00 3.11
2710 2920 6.299141 TCTTCTGTATTGCACTCTTTTCCTT 58.701 36.000 0.00 0.00 0.00 3.36
2711 2921 5.869579 TCTTCTGTATTGCACTCTTTTCCT 58.130 37.500 0.00 0.00 0.00 3.36
2712 2922 6.183360 GGATCTTCTGTATTGCACTCTTTTCC 60.183 42.308 0.00 0.00 0.00 3.13
2713 2923 6.456181 CGGATCTTCTGTATTGCACTCTTTTC 60.456 42.308 0.00 0.00 0.00 2.29
2714 2924 5.352569 CGGATCTTCTGTATTGCACTCTTTT 59.647 40.000 0.00 0.00 0.00 2.27
2715 2925 4.872691 CGGATCTTCTGTATTGCACTCTTT 59.127 41.667 0.00 0.00 0.00 2.52
2716 2926 4.160439 TCGGATCTTCTGTATTGCACTCTT 59.840 41.667 0.00 0.00 0.00 2.85
2717 2927 3.701542 TCGGATCTTCTGTATTGCACTCT 59.298 43.478 0.00 0.00 0.00 3.24
2718 2928 4.046938 TCGGATCTTCTGTATTGCACTC 57.953 45.455 0.00 0.00 0.00 3.51
2719 2929 4.471904 TTCGGATCTTCTGTATTGCACT 57.528 40.909 0.00 0.00 0.00 4.40
2720 2930 5.545658 TTTTCGGATCTTCTGTATTGCAC 57.454 39.130 0.00 0.00 0.00 4.57
2721 2931 6.115446 AGATTTTCGGATCTTCTGTATTGCA 58.885 36.000 0.00 0.00 32.54 4.08
2722 2932 6.563010 CGAGATTTTCGGATCTTCTGTATTGC 60.563 42.308 0.00 0.00 45.54 3.56
2723 2933 6.871562 CGAGATTTTCGGATCTTCTGTATTG 58.128 40.000 0.00 0.00 45.54 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.