Multiple sequence alignment - TraesCS7D01G202600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G202600 chr7D 100.000 2249 0 0 1 2249 161145140 161142892 0.000000e+00 4154.0
1 TraesCS7D01G202600 chr7D 76.325 566 61 41 749 1280 161187492 161186966 3.730000e-58 235.0
2 TraesCS7D01G202600 chr7D 98.077 52 1 0 134 185 161144954 161144903 8.550000e-15 91.6
3 TraesCS7D01G202600 chr7D 98.077 52 1 0 187 238 161145007 161144956 8.550000e-15 91.6
4 TraesCS7D01G202600 chr7A 85.427 1393 103 38 323 1678 162509957 162508628 0.000000e+00 1356.0
5 TraesCS7D01G202600 chr7A 90.311 289 27 1 1668 1955 162508605 162508317 5.860000e-101 377.0
6 TraesCS7D01G202600 chr7A 82.222 315 31 16 980 1280 162513450 162513147 4.800000e-62 248.0
7 TraesCS7D01G202600 chr7A 93.388 121 7 1 189 308 162510512 162510392 6.380000e-41 178.0
8 TraesCS7D01G202600 chr7B 87.558 1077 74 20 636 1678 123304214 123303164 0.000000e+00 1192.0
9 TraesCS7D01G202600 chr7B 92.683 287 20 1 1663 1948 123303147 123302861 1.610000e-111 412.0
10 TraesCS7D01G202600 chr7B 77.674 533 55 40 749 1246 123311902 123311399 1.320000e-67 267.0
11 TraesCS7D01G202600 chr1A 100.000 28 0 0 533 560 300932803 300932830 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G202600 chr7D 161142892 161145140 2248 True 1445.733333 4154 98.7180 1 2249 3 chr7D.!!$R2 2248
1 TraesCS7D01G202600 chr7D 161186966 161187492 526 True 235.000000 235 76.3250 749 1280 1 chr7D.!!$R1 531
2 TraesCS7D01G202600 chr7A 162508317 162513450 5133 True 539.750000 1356 87.8370 189 1955 4 chr7A.!!$R1 1766
3 TraesCS7D01G202600 chr7B 123302861 123304214 1353 True 802.000000 1192 90.1205 636 1948 2 chr7B.!!$R2 1312
4 TraesCS7D01G202600 chr7B 123311399 123311902 503 True 267.000000 267 77.6740 749 1246 1 chr7B.!!$R1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.040204 GGGCCGCCCTAGTAGGTATA 59.96 60.0 22.31 0.0 41.34 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 4545 0.027063 AAACACGCGTTGGAACTTCG 59.973 50.0 10.22 0.0 34.86 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.641709 TCAAATTGCTACAAAACGACAACA 58.358 33.333 0.00 0.00 0.00 3.33
24 25 6.093404 TCAAATTGCTACAAAACGACAACAA 58.907 32.000 0.00 0.00 0.00 2.83
25 26 6.754209 TCAAATTGCTACAAAACGACAACAAT 59.246 30.769 0.00 0.00 0.00 2.71
26 27 6.509317 AATTGCTACAAAACGACAACAATG 57.491 33.333 0.00 0.00 0.00 2.82
32 33 2.414840 AAACGACAACAATGGGCCGC 62.415 55.000 0.00 0.00 0.00 6.53
34 35 3.758931 GACAACAATGGGCCGCCC 61.759 66.667 22.81 22.81 45.71 6.13
35 36 4.299796 ACAACAATGGGCCGCCCT 62.300 61.111 28.97 12.07 45.70 5.19
36 37 2.044451 CAACAATGGGCCGCCCTA 60.044 61.111 28.97 15.78 45.70 3.53
37 38 2.120909 CAACAATGGGCCGCCCTAG 61.121 63.158 28.97 19.63 45.70 3.02
38 39 2.612493 AACAATGGGCCGCCCTAGT 61.612 57.895 28.97 20.25 45.70 2.57
39 40 1.276140 AACAATGGGCCGCCCTAGTA 61.276 55.000 28.97 9.49 45.70 1.82
40 41 1.071471 CAATGGGCCGCCCTAGTAG 59.929 63.158 28.97 10.79 45.70 2.57
42 43 2.909292 AATGGGCCGCCCTAGTAGGT 62.909 60.000 28.97 3.82 45.70 3.08
44 45 1.229114 GGGCCGCCCTAGTAGGTAT 60.229 63.158 22.31 0.00 41.34 2.73
45 46 0.040204 GGGCCGCCCTAGTAGGTATA 59.960 60.000 22.31 0.00 41.34 1.47
46 47 1.472188 GGCCGCCCTAGTAGGTATAG 58.528 60.000 15.26 0.75 31.93 1.31
47 48 1.005215 GGCCGCCCTAGTAGGTATAGA 59.995 57.143 15.26 0.00 31.93 1.98
48 49 2.090760 GCCGCCCTAGTAGGTATAGAC 58.909 57.143 15.26 0.00 31.93 2.59
49 50 2.354259 CCGCCCTAGTAGGTATAGACG 58.646 57.143 15.26 8.33 31.93 4.18
51 52 2.027745 CGCCCTAGTAGGTATAGACGGA 60.028 54.545 15.26 0.00 31.93 4.69
52 53 3.608796 GCCCTAGTAGGTATAGACGGAG 58.391 54.545 15.26 0.00 31.93 4.63
53 54 3.621958 GCCCTAGTAGGTATAGACGGAGG 60.622 56.522 15.26 0.00 31.93 4.30
54 55 3.843027 CCCTAGTAGGTATAGACGGAGGA 59.157 52.174 15.26 0.00 31.93 3.71
55 56 4.288105 CCCTAGTAGGTATAGACGGAGGAA 59.712 50.000 15.26 0.00 31.93 3.36
56 57 5.222007 CCCTAGTAGGTATAGACGGAGGAAA 60.222 48.000 15.26 0.00 31.93 3.13
58 59 4.468713 AGTAGGTATAGACGGAGGAAACC 58.531 47.826 0.00 0.00 0.00 3.27
59 60 2.675583 AGGTATAGACGGAGGAAACCC 58.324 52.381 0.00 0.00 0.00 4.11
60 61 1.690893 GGTATAGACGGAGGAAACCCC 59.309 57.143 0.00 0.00 0.00 4.95
68 69 3.181282 AGGAAACCCCTCCAAGGC 58.819 61.111 0.00 0.00 43.31 4.35
69 70 1.466186 AGGAAACCCCTCCAAGGCT 60.466 57.895 0.00 0.00 43.31 4.58
71 72 1.304464 GAAACCCCTCCAAGGCTGG 60.304 63.158 0.00 0.00 45.08 4.85
72 73 2.081585 GAAACCCCTCCAAGGCTGGT 62.082 60.000 0.00 0.00 43.97 4.00
73 74 2.081585 AAACCCCTCCAAGGCTGGTC 62.082 60.000 0.00 0.00 43.97 4.02
74 75 2.935481 CCCCTCCAAGGCTGGTCA 60.935 66.667 0.00 0.00 43.97 4.02
75 76 2.352805 CCCTCCAAGGCTGGTCAC 59.647 66.667 0.00 0.00 43.97 3.67
76 77 2.227036 CCCTCCAAGGCTGGTCACT 61.227 63.158 0.00 0.00 43.97 3.41
77 78 1.763770 CCTCCAAGGCTGGTCACTT 59.236 57.895 0.00 0.00 43.97 3.16
78 79 0.111253 CCTCCAAGGCTGGTCACTTT 59.889 55.000 0.00 0.00 43.97 2.66
79 80 1.351017 CCTCCAAGGCTGGTCACTTTA 59.649 52.381 0.00 0.00 43.97 1.85
80 81 2.224769 CCTCCAAGGCTGGTCACTTTAA 60.225 50.000 0.00 0.00 43.97 1.52
81 82 3.562176 CCTCCAAGGCTGGTCACTTTAAT 60.562 47.826 0.00 0.00 43.97 1.40
82 83 4.082125 CTCCAAGGCTGGTCACTTTAATT 58.918 43.478 0.00 0.00 43.97 1.40
84 85 4.898861 TCCAAGGCTGGTCACTTTAATTTT 59.101 37.500 0.00 0.00 43.97 1.82
85 86 6.071984 TCCAAGGCTGGTCACTTTAATTTTA 58.928 36.000 0.00 0.00 43.97 1.52
86 87 6.551601 TCCAAGGCTGGTCACTTTAATTTTAA 59.448 34.615 0.00 0.00 43.97 1.52
87 88 7.070074 TCCAAGGCTGGTCACTTTAATTTTAAA 59.930 33.333 0.00 0.00 43.97 1.52
88 89 7.713073 CCAAGGCTGGTCACTTTAATTTTAAAA 59.287 33.333 2.51 2.51 38.00 1.52
134 135 8.616942 TCTTGATATAAGCGAGATATAGTGCTC 58.383 37.037 0.00 0.00 36.49 4.26
139 140 2.815657 CGAGATATAGTGCTCGCGAT 57.184 50.000 10.36 0.00 45.97 4.58
140 141 2.435714 CGAGATATAGTGCTCGCGATG 58.564 52.381 10.36 5.11 45.97 3.84
142 143 1.135257 AGATATAGTGCTCGCGATGCC 60.135 52.381 21.97 15.25 0.00 4.40
144 145 1.460273 TATAGTGCTCGCGATGCCCA 61.460 55.000 21.97 10.43 0.00 5.36
145 146 2.978452 ATAGTGCTCGCGATGCCCAC 62.978 60.000 21.97 19.18 0.00 4.61
152 153 2.185867 GCGATGCCCACCGTTCTA 59.814 61.111 0.00 0.00 0.00 2.10
153 154 1.448893 GCGATGCCCACCGTTCTAA 60.449 57.895 0.00 0.00 0.00 2.10
154 155 0.814010 GCGATGCCCACCGTTCTAAT 60.814 55.000 0.00 0.00 0.00 1.73
155 156 1.539496 GCGATGCCCACCGTTCTAATA 60.539 52.381 0.00 0.00 0.00 0.98
156 157 2.870435 GCGATGCCCACCGTTCTAATAT 60.870 50.000 0.00 0.00 0.00 1.28
157 158 3.399330 CGATGCCCACCGTTCTAATATT 58.601 45.455 0.00 0.00 0.00 1.28
158 159 3.186409 CGATGCCCACCGTTCTAATATTG 59.814 47.826 0.00 0.00 0.00 1.90
159 160 2.294074 TGCCCACCGTTCTAATATTGC 58.706 47.619 0.00 0.00 0.00 3.56
161 162 2.925724 CCCACCGTTCTAATATTGCCA 58.074 47.619 0.00 0.00 0.00 4.92
164 165 3.541632 CACCGTTCTAATATTGCCAGGT 58.458 45.455 0.00 0.00 0.00 4.00
166 167 3.199071 ACCGTTCTAATATTGCCAGGTCA 59.801 43.478 0.00 0.00 0.00 4.02
168 169 4.442706 CGTTCTAATATTGCCAGGTCACT 58.557 43.478 0.00 0.00 0.00 3.41
169 170 5.452776 CCGTTCTAATATTGCCAGGTCACTA 60.453 44.000 0.00 0.00 0.00 2.74
170 171 6.046593 CGTTCTAATATTGCCAGGTCACTAA 58.953 40.000 0.00 0.00 0.00 2.24
171 172 6.537301 CGTTCTAATATTGCCAGGTCACTAAA 59.463 38.462 0.00 0.00 0.00 1.85
173 174 7.432148 TCTAATATTGCCAGGTCACTAAAGA 57.568 36.000 0.00 0.00 0.00 2.52
174 175 7.857456 TCTAATATTGCCAGGTCACTAAAGAA 58.143 34.615 0.00 0.00 0.00 2.52
175 176 7.987458 TCTAATATTGCCAGGTCACTAAAGAAG 59.013 37.037 0.00 0.00 0.00 2.85
176 177 4.640771 ATTGCCAGGTCACTAAAGAAGA 57.359 40.909 0.00 0.00 0.00 2.87
177 178 3.685139 TGCCAGGTCACTAAAGAAGAG 57.315 47.619 0.00 0.00 0.00 2.85
178 179 2.303022 TGCCAGGTCACTAAAGAAGAGG 59.697 50.000 0.00 0.00 0.00 3.69
179 180 2.355209 GCCAGGTCACTAAAGAAGAGGG 60.355 54.545 0.00 0.00 0.00 4.30
180 181 2.907042 CCAGGTCACTAAAGAAGAGGGT 59.093 50.000 0.00 0.00 0.00 4.34
182 183 3.325135 CAGGTCACTAAAGAAGAGGGTGT 59.675 47.826 0.00 0.00 0.00 4.16
183 184 3.325135 AGGTCACTAAAGAAGAGGGTGTG 59.675 47.826 0.00 0.00 0.00 3.82
184 185 3.557264 GGTCACTAAAGAAGAGGGTGTGG 60.557 52.174 0.00 0.00 0.00 4.17
185 186 3.071167 GTCACTAAAGAAGAGGGTGTGGT 59.929 47.826 0.00 0.00 0.00 4.16
186 187 3.714798 TCACTAAAGAAGAGGGTGTGGTT 59.285 43.478 0.00 0.00 0.00 3.67
187 188 4.065789 CACTAAAGAAGAGGGTGTGGTTC 58.934 47.826 0.00 0.00 0.00 3.62
188 189 2.256117 AAAGAAGAGGGTGTGGTTCG 57.744 50.000 0.00 0.00 0.00 3.95
189 190 0.250338 AAGAAGAGGGTGTGGTTCGC 60.250 55.000 0.00 0.00 0.00 4.70
190 191 2.027625 GAAGAGGGTGTGGTTCGCG 61.028 63.158 0.00 0.00 0.00 5.87
191 192 2.430382 GAAGAGGGTGTGGTTCGCGA 62.430 60.000 3.71 3.71 0.00 5.87
192 193 1.827399 AAGAGGGTGTGGTTCGCGAT 61.827 55.000 10.88 0.00 0.00 4.58
215 2966 2.878406 CCCACCGTTCTAATATTGCCAG 59.122 50.000 0.00 0.00 0.00 4.85
253 3004 1.467035 CGTGGCTACAGGTAAGTCGAC 60.467 57.143 7.70 7.70 0.00 4.20
259 3011 4.694037 GGCTACAGGTAAGTCGACAAAAAT 59.306 41.667 19.50 0.75 0.00 1.82
265 3017 7.712797 ACAGGTAAGTCGACAAAAATTGAAAT 58.287 30.769 19.50 0.00 0.00 2.17
288 3040 1.539827 GGGTGAGTCAATTCGTTTGGG 59.460 52.381 0.00 0.00 35.92 4.12
314 3474 7.902032 ACGTCAAATACAAATCTAATGGTACG 58.098 34.615 0.00 0.00 0.00 3.67
317 3477 7.850982 GTCAAATACAAATCTAATGGTACGCAG 59.149 37.037 0.00 0.00 0.00 5.18
326 3486 2.674796 ATGGTACGCAGTCCTTCTTC 57.325 50.000 0.00 0.00 43.93 2.87
330 3490 2.289506 GGTACGCAGTCCTTCTTCCTTT 60.290 50.000 0.00 0.00 43.93 3.11
336 3508 2.373502 CAGTCCTTCTTCCTTTCCCAGT 59.626 50.000 0.00 0.00 0.00 4.00
342 3514 2.043992 TCTTCCTTTCCCAGTCGAACA 58.956 47.619 0.00 0.00 0.00 3.18
371 3543 4.778143 GAACCGCCGGCCATCACT 62.778 66.667 23.46 0.00 0.00 3.41
382 3554 4.457496 CATCACTGTCCGCGGCCT 62.457 66.667 23.51 0.00 0.00 5.19
418 3598 4.918201 CCCGCGCTCCCCTCAATC 62.918 72.222 5.56 0.00 0.00 2.67
428 3608 2.370445 CCCTCAATCGCCTCCCACT 61.370 63.158 0.00 0.00 0.00 4.00
467 3647 1.364171 CCATTCCTCTAGCCCGACG 59.636 63.158 0.00 0.00 0.00 5.12
517 3698 2.639839 CCATCCCACACCCCTAAGATAG 59.360 54.545 0.00 0.00 0.00 2.08
519 3700 3.042059 TCCCACACCCCTAAGATAGAC 57.958 52.381 0.00 0.00 0.00 2.59
524 3705 4.444876 CCACACCCCTAAGATAGACAATGG 60.445 50.000 0.00 0.00 0.00 3.16
534 3715 4.723309 AGATAGACAATGGGGAAGCATTC 58.277 43.478 0.00 0.00 46.67 2.67
556 3737 2.188207 GCGAGCTCCTTCCTTCCC 59.812 66.667 8.47 0.00 0.00 3.97
559 3740 1.681486 CGAGCTCCTTCCTTCCCTCC 61.681 65.000 8.47 0.00 0.00 4.30
588 3769 2.412847 CCTTCCTTCACGCGAAATCAAC 60.413 50.000 15.93 0.00 0.00 3.18
589 3770 1.153353 TCCTTCACGCGAAATCAACC 58.847 50.000 15.93 0.00 0.00 3.77
590 3771 0.168128 CCTTCACGCGAAATCAACCC 59.832 55.000 15.93 0.00 0.00 4.11
618 3799 9.695155 CCTAAATTCTAAATTCAGGGGACTTAA 57.305 33.333 0.00 0.00 40.21 1.85
633 3814 6.387220 AGGGGACTTAAATCTAGCTATTGTGT 59.613 38.462 0.00 0.00 37.44 3.72
651 3832 9.522804 CTATTGTGTGAAGAAGAAGAGTATACC 57.477 37.037 0.00 0.00 0.00 2.73
677 3860 4.201783 CCGTTTTGATGGAATTCTACGACC 60.202 45.833 5.23 0.00 0.00 4.79
682 3865 3.458118 TGATGGAATTCTACGACCCCATT 59.542 43.478 5.23 0.00 34.83 3.16
683 3866 3.553828 TGGAATTCTACGACCCCATTC 57.446 47.619 5.23 0.00 0.00 2.67
685 3868 2.171870 GGAATTCTACGACCCCATTCCA 59.828 50.000 5.23 0.00 41.76 3.53
686 3869 3.181443 GGAATTCTACGACCCCATTCCAT 60.181 47.826 5.23 0.00 41.76 3.41
798 4001 0.392193 CATGCAACTTCCTCGCCTCT 60.392 55.000 0.00 0.00 0.00 3.69
803 4014 1.316706 AACTTCCTCGCCTCTCTCCG 61.317 60.000 0.00 0.00 0.00 4.63
806 4017 3.578272 CCTCGCCTCTCTCCGTCG 61.578 72.222 0.00 0.00 0.00 5.12
879 4096 2.606751 AGCCCATATAGCTACCTCGT 57.393 50.000 0.00 0.00 39.29 4.18
880 4097 3.733883 AGCCCATATAGCTACCTCGTA 57.266 47.619 0.00 0.00 39.29 3.43
961 4189 4.122776 TGTTGCAAAGAGAGAAGAGACAC 58.877 43.478 0.00 0.00 0.00 3.67
966 4194 4.685628 GCAAAGAGAGAAGAGACACAAGAG 59.314 45.833 0.00 0.00 0.00 2.85
977 4205 1.002544 GACACAAGAGGAGGAGGGTTG 59.997 57.143 0.00 0.00 0.00 3.77
978 4206 0.322008 CACAAGAGGAGGAGGGTTGC 60.322 60.000 0.00 0.00 0.00 4.17
1007 4239 3.799755 GGTTGACGACATGGCCGC 61.800 66.667 0.00 4.20 0.00 6.53
1025 4260 2.818132 CGTGAGGAGGATGAGGCC 59.182 66.667 0.00 0.00 0.00 5.19
1047 4282 2.046988 CTGCTGGTGATCGTGGCA 60.047 61.111 0.00 0.00 0.00 4.92
1054 4289 4.067913 TGATCGTGGCAGCGCTCA 62.068 61.111 7.13 0.00 35.14 4.26
1194 4432 2.438975 TACATGCAGCAGCTGGGC 60.439 61.111 24.13 11.18 42.74 5.36
1195 4433 3.270941 TACATGCAGCAGCTGGGCA 62.271 57.895 24.13 16.81 42.74 5.36
1196 4434 3.826754 CATGCAGCAGCTGGGCAG 61.827 66.667 24.13 7.08 41.40 4.85
1259 4500 2.838225 CCCGTAGATGGCCGAGGT 60.838 66.667 0.00 0.00 0.00 3.85
1295 4541 4.233635 CGGCGTACGTCCTCTCGG 62.234 72.222 15.26 0.00 37.93 4.63
1299 4545 1.427020 CGTACGTCCTCTCGGGTTC 59.573 63.158 7.22 0.00 36.25 3.62
1312 4558 1.572941 GGGTTCGAAGTTCCAACGC 59.427 57.895 13.14 13.14 0.00 4.84
1315 4561 0.382636 GTTCGAAGTTCCAACGCGTG 60.383 55.000 14.98 7.16 34.70 5.34
1319 4565 1.530236 CGAAGTTCCAACGCGTGTTTT 60.530 47.619 14.98 3.30 35.72 2.43
1320 4566 2.521996 GAAGTTCCAACGCGTGTTTTT 58.478 42.857 14.98 2.81 35.72 1.94
1356 4602 2.614983 GGTAGACTCTGGTGATCGACTC 59.385 54.545 0.00 0.00 0.00 3.36
1369 4615 5.221541 GGTGATCGACTCTAGGATTGGATTT 60.222 44.000 0.00 0.00 0.00 2.17
1466 4715 9.680315 AGAAGAAAAGATACACATATAGTACGC 57.320 33.333 0.00 0.00 0.00 4.42
1473 4722 8.123639 AGATACACATATAGTACGCAGGATTT 57.876 34.615 0.00 0.00 0.00 2.17
1479 4728 7.850982 CACATATAGTACGCAGGATTTTGTTTC 59.149 37.037 0.00 0.00 0.00 2.78
1484 4741 6.842163 AGTACGCAGGATTTTGTTTCAATAG 58.158 36.000 0.00 0.00 0.00 1.73
1488 4745 5.283717 CGCAGGATTTTGTTTCAATAGAACG 59.716 40.000 0.00 0.00 32.39 3.95
1493 4750 7.664318 AGGATTTTGTTTCAATAGAACGTAGGT 59.336 33.333 0.00 0.00 32.39 3.08
1500 4757 6.519679 TTCAATAGAACGTAGGTAAGCTGA 57.480 37.500 0.00 0.00 0.00 4.26
1502 4759 6.327934 TCAATAGAACGTAGGTAAGCTGAAC 58.672 40.000 0.00 0.00 0.00 3.18
1518 4775 4.690184 CTGAACAAGCATCAGCAATACA 57.310 40.909 0.00 0.00 45.49 2.29
1519 4776 5.244785 CTGAACAAGCATCAGCAATACAT 57.755 39.130 0.00 0.00 45.49 2.29
1520 4777 5.647589 CTGAACAAGCATCAGCAATACATT 58.352 37.500 0.00 0.00 45.49 2.71
1521 4778 6.028146 TGAACAAGCATCAGCAATACATTT 57.972 33.333 0.00 0.00 45.49 2.32
1522 4779 5.865013 TGAACAAGCATCAGCAATACATTTG 59.135 36.000 0.00 0.00 45.49 2.32
1523 4780 5.395682 ACAAGCATCAGCAATACATTTGT 57.604 34.783 0.00 0.00 45.49 2.83
1524 4781 6.513806 ACAAGCATCAGCAATACATTTGTA 57.486 33.333 0.00 0.00 45.49 2.41
1525 4782 7.104043 ACAAGCATCAGCAATACATTTGTAT 57.896 32.000 0.00 0.00 45.49 2.29
1527 4784 8.036575 ACAAGCATCAGCAATACATTTGTATTT 58.963 29.630 12.17 0.00 46.23 1.40
1528 4785 7.997107 AGCATCAGCAATACATTTGTATTTG 57.003 32.000 12.17 9.89 46.23 2.32
1529 4786 7.549839 AGCATCAGCAATACATTTGTATTTGT 58.450 30.769 12.17 2.00 46.23 2.83
1530 4787 7.490079 AGCATCAGCAATACATTTGTATTTGTG 59.510 33.333 12.17 12.04 46.23 3.33
1531 4788 7.276218 GCATCAGCAATACATTTGTATTTGTGT 59.724 33.333 12.17 3.14 45.90 3.72
1532 4789 9.142515 CATCAGCAATACATTTGTATTTGTGTT 57.857 29.630 12.17 6.45 45.90 3.32
1656 4946 6.377146 ACCAAGAACAGTTCTGTGTATTTTGT 59.623 34.615 16.85 6.74 40.59 2.83
1666 4956 7.386848 AGTTCTGTGTATTTTGTTACGTATGCT 59.613 33.333 0.00 0.00 0.00 3.79
1761 5085 2.747460 CACGTGTGAGGCCATGGG 60.747 66.667 15.13 0.00 0.00 4.00
1820 5144 1.337447 CCGTTTTGTCCTTCTCGGCTA 60.337 52.381 0.00 0.00 0.00 3.93
1829 5153 2.093658 TCCTTCTCGGCTATGTTTGACC 60.094 50.000 0.00 0.00 0.00 4.02
1849 5173 4.436998 CGGCGAGCGGAAGTCCTT 62.437 66.667 0.00 0.00 0.00 3.36
1850 5174 2.815647 GGCGAGCGGAAGTCCTTG 60.816 66.667 0.00 0.00 0.00 3.61
1899 5223 1.304134 TCTGCTGGACGCCTCACTA 60.304 57.895 0.00 0.00 38.05 2.74
1902 5226 3.006756 GCTGGACGCCTCACTAGCA 62.007 63.158 0.00 0.00 0.00 3.49
1904 5228 0.176680 CTGGACGCCTCACTAGCATT 59.823 55.000 0.00 0.00 0.00 3.56
1915 5239 4.495422 CTCACTAGCATTAACGTGACCTT 58.505 43.478 0.00 0.00 33.32 3.50
1918 5242 4.267928 CACTAGCATTAACGTGACCTTAGC 59.732 45.833 0.00 0.00 0.00 3.09
1919 5243 3.328382 AGCATTAACGTGACCTTAGCA 57.672 42.857 0.00 0.00 0.00 3.49
1966 5290 4.242602 GCCATTGCTACCCACCTC 57.757 61.111 0.00 0.00 33.53 3.85
1967 5291 1.609783 GCCATTGCTACCCACCTCT 59.390 57.895 0.00 0.00 33.53 3.69
1968 5292 0.034089 GCCATTGCTACCCACCTCTT 60.034 55.000 0.00 0.00 33.53 2.85
1969 5293 1.616994 GCCATTGCTACCCACCTCTTT 60.617 52.381 0.00 0.00 33.53 2.52
1970 5294 2.094675 CCATTGCTACCCACCTCTTTG 58.905 52.381 0.00 0.00 0.00 2.77
1971 5295 2.555227 CCATTGCTACCCACCTCTTTGT 60.555 50.000 0.00 0.00 0.00 2.83
1972 5296 2.561478 TTGCTACCCACCTCTTTGTC 57.439 50.000 0.00 0.00 0.00 3.18
1973 5297 0.690762 TGCTACCCACCTCTTTGTCC 59.309 55.000 0.00 0.00 0.00 4.02
1974 5298 0.035343 GCTACCCACCTCTTTGTCCC 60.035 60.000 0.00 0.00 0.00 4.46
1975 5299 1.358152 CTACCCACCTCTTTGTCCCA 58.642 55.000 0.00 0.00 0.00 4.37
1976 5300 1.702957 CTACCCACCTCTTTGTCCCAA 59.297 52.381 0.00 0.00 0.00 4.12
1977 5301 0.930726 ACCCACCTCTTTGTCCCAAA 59.069 50.000 0.00 0.00 0.00 3.28
1978 5302 1.289530 ACCCACCTCTTTGTCCCAAAA 59.710 47.619 0.00 0.00 0.00 2.44
1979 5303 2.090775 ACCCACCTCTTTGTCCCAAAAT 60.091 45.455 0.00 0.00 0.00 1.82
1980 5304 3.141272 ACCCACCTCTTTGTCCCAAAATA 59.859 43.478 0.00 0.00 0.00 1.40
1981 5305 4.156477 CCCACCTCTTTGTCCCAAAATAA 58.844 43.478 0.00 0.00 0.00 1.40
1982 5306 4.591072 CCCACCTCTTTGTCCCAAAATAAA 59.409 41.667 0.00 0.00 0.00 1.40
1983 5307 5.248248 CCCACCTCTTTGTCCCAAAATAAAT 59.752 40.000 0.00 0.00 0.00 1.40
1984 5308 6.165577 CCACCTCTTTGTCCCAAAATAAATG 58.834 40.000 0.00 0.00 0.00 2.32
1985 5309 6.239572 CCACCTCTTTGTCCCAAAATAAATGT 60.240 38.462 0.00 0.00 0.00 2.71
1986 5310 7.039363 CCACCTCTTTGTCCCAAAATAAATGTA 60.039 37.037 0.00 0.00 0.00 2.29
1987 5311 8.364142 CACCTCTTTGTCCCAAAATAAATGTAA 58.636 33.333 0.00 0.00 0.00 2.41
1988 5312 8.929487 ACCTCTTTGTCCCAAAATAAATGTAAA 58.071 29.630 0.00 0.00 0.00 2.01
1989 5313 9.423061 CCTCTTTGTCCCAAAATAAATGTAAAG 57.577 33.333 0.00 0.00 0.00 1.85
1990 5314 8.825667 TCTTTGTCCCAAAATAAATGTAAAGC 57.174 30.769 0.00 0.00 0.00 3.51
1991 5315 8.646900 TCTTTGTCCCAAAATAAATGTAAAGCT 58.353 29.630 0.00 0.00 0.00 3.74
1992 5316 8.600449 TTTGTCCCAAAATAAATGTAAAGCTG 57.400 30.769 0.00 0.00 0.00 4.24
1993 5317 6.696411 TGTCCCAAAATAAATGTAAAGCTGG 58.304 36.000 0.00 0.00 0.00 4.85
1994 5318 6.268847 TGTCCCAAAATAAATGTAAAGCTGGT 59.731 34.615 0.00 0.00 0.00 4.00
1995 5319 7.451877 TGTCCCAAAATAAATGTAAAGCTGGTA 59.548 33.333 0.00 0.00 0.00 3.25
1996 5320 7.758076 GTCCCAAAATAAATGTAAAGCTGGTAC 59.242 37.037 0.00 0.00 0.00 3.34
1997 5321 7.451877 TCCCAAAATAAATGTAAAGCTGGTACA 59.548 33.333 11.75 11.75 35.98 2.90
1998 5322 8.091449 CCCAAAATAAATGTAAAGCTGGTACAA 58.909 33.333 13.01 0.33 38.70 2.41
1999 5323 9.482627 CCAAAATAAATGTAAAGCTGGTACAAA 57.517 29.630 13.01 4.68 38.70 2.83
2004 5328 9.953565 ATAAATGTAAAGCTGGTACAAAGTAGA 57.046 29.630 13.01 0.11 38.70 2.59
2005 5329 7.907214 AATGTAAAGCTGGTACAAAGTAGAG 57.093 36.000 13.01 0.00 38.70 2.43
2006 5330 6.659745 TGTAAAGCTGGTACAAAGTAGAGA 57.340 37.500 7.83 0.00 38.70 3.10
2007 5331 6.453092 TGTAAAGCTGGTACAAAGTAGAGAC 58.547 40.000 7.83 0.00 38.70 3.36
2008 5332 5.546621 AAAGCTGGTACAAAGTAGAGACA 57.453 39.130 0.00 0.00 38.70 3.41
2009 5333 5.746990 AAGCTGGTACAAAGTAGAGACAT 57.253 39.130 0.00 0.00 38.70 3.06
2010 5334 5.746990 AGCTGGTACAAAGTAGAGACATT 57.253 39.130 0.00 0.00 38.70 2.71
2011 5335 6.115448 AGCTGGTACAAAGTAGAGACATTT 57.885 37.500 0.00 0.00 38.70 2.32
2012 5336 7.241042 AGCTGGTACAAAGTAGAGACATTTA 57.759 36.000 0.00 0.00 38.70 1.40
2013 5337 7.852263 AGCTGGTACAAAGTAGAGACATTTAT 58.148 34.615 0.00 0.00 38.70 1.40
2014 5338 8.322091 AGCTGGTACAAAGTAGAGACATTTATT 58.678 33.333 0.00 0.00 38.70 1.40
2015 5339 8.947115 GCTGGTACAAAGTAGAGACATTTATTT 58.053 33.333 0.00 0.00 38.70 1.40
2030 5354 9.930693 AGACATTTATTTTAAGACGAAGAGAGT 57.069 29.630 0.00 0.00 0.00 3.24
2040 5364 8.670804 TTAAGACGAAGAGAGTATTTTTCTCG 57.329 34.615 0.00 0.00 44.53 4.04
2041 5365 6.256912 AGACGAAGAGAGTATTTTTCTCGT 57.743 37.500 0.00 0.00 44.53 4.18
2042 5366 6.316319 AGACGAAGAGAGTATTTTTCTCGTC 58.684 40.000 12.05 12.05 44.53 4.20
2044 5368 5.935448 GAAGAGAGTATTTTTCTCGTCGG 57.065 43.478 3.22 0.00 44.53 4.79
2045 5369 5.388408 AAGAGAGTATTTTTCTCGTCGGT 57.612 39.130 0.00 0.00 44.53 4.69
2046 5370 4.734917 AGAGAGTATTTTTCTCGTCGGTG 58.265 43.478 0.00 0.00 44.53 4.94
2047 5371 3.846360 AGAGTATTTTTCTCGTCGGTGG 58.154 45.455 0.00 0.00 37.07 4.61
2048 5372 2.344025 AGTATTTTTCTCGTCGGTGGC 58.656 47.619 0.00 0.00 0.00 5.01
2049 5373 2.028385 AGTATTTTTCTCGTCGGTGGCT 60.028 45.455 0.00 0.00 0.00 4.75
2050 5374 1.156736 ATTTTTCTCGTCGGTGGCTG 58.843 50.000 0.00 0.00 0.00 4.85
2051 5375 0.882927 TTTTTCTCGTCGGTGGCTGG 60.883 55.000 0.00 0.00 0.00 4.85
2052 5376 3.876589 TTTCTCGTCGGTGGCTGGC 62.877 63.158 0.00 0.00 0.00 4.85
2070 5394 3.996825 CACCCGTGCTTCATTTAGC 57.003 52.632 0.00 0.00 41.59 3.09
2071 5395 0.451783 CACCCGTGCTTCATTTAGCC 59.548 55.000 0.00 0.00 40.49 3.93
2072 5396 1.024579 ACCCGTGCTTCATTTAGCCG 61.025 55.000 0.00 0.00 40.49 5.52
2073 5397 1.714899 CCCGTGCTTCATTTAGCCGG 61.715 60.000 14.45 14.45 45.93 6.13
2074 5398 1.024579 CCGTGCTTCATTTAGCCGGT 61.025 55.000 1.90 0.00 43.65 5.28
2075 5399 0.096976 CGTGCTTCATTTAGCCGGTG 59.903 55.000 1.90 0.00 40.49 4.94
2076 5400 1.448985 GTGCTTCATTTAGCCGGTGA 58.551 50.000 1.90 0.00 40.49 4.02
2077 5401 2.017049 GTGCTTCATTTAGCCGGTGAT 58.983 47.619 1.90 0.00 40.49 3.06
2078 5402 2.016318 TGCTTCATTTAGCCGGTGATG 58.984 47.619 1.90 1.80 40.49 3.07
2079 5403 2.017049 GCTTCATTTAGCCGGTGATGT 58.983 47.619 1.90 0.00 35.06 3.06
2080 5404 3.202906 GCTTCATTTAGCCGGTGATGTA 58.797 45.455 1.90 0.00 35.06 2.29
2081 5405 3.002348 GCTTCATTTAGCCGGTGATGTAC 59.998 47.826 1.90 0.00 35.06 2.90
2082 5406 3.188159 TCATTTAGCCGGTGATGTACC 57.812 47.619 1.90 0.00 46.56 3.34
2101 5425 2.972625 CCAACTCTATTTGGCGACAGA 58.027 47.619 0.00 0.00 44.54 3.41
2102 5426 2.932614 CCAACTCTATTTGGCGACAGAG 59.067 50.000 3.81 3.81 44.54 3.35
2103 5427 2.301577 ACTCTATTTGGCGACAGAGC 57.698 50.000 5.21 0.00 44.54 4.09
2104 5428 1.203928 CTCTATTTGGCGACAGAGCG 58.796 55.000 0.00 0.00 44.54 5.03
2105 5429 0.530744 TCTATTTGGCGACAGAGCGT 59.469 50.000 0.00 0.00 44.54 5.07
2106 5430 0.647410 CTATTTGGCGACAGAGCGTG 59.353 55.000 0.00 0.00 44.54 5.34
2107 5431 0.739462 TATTTGGCGACAGAGCGTGG 60.739 55.000 0.00 0.00 44.54 4.94
2108 5432 2.449031 ATTTGGCGACAGAGCGTGGA 62.449 55.000 0.00 0.00 44.54 4.02
2109 5433 2.449031 TTTGGCGACAGAGCGTGGAT 62.449 55.000 0.00 0.00 44.54 3.41
2110 5434 2.125512 GGCGACAGAGCGTGGATT 60.126 61.111 0.00 0.00 38.18 3.01
2111 5435 1.741770 GGCGACAGAGCGTGGATTT 60.742 57.895 0.00 0.00 38.18 2.17
2112 5436 1.298859 GGCGACAGAGCGTGGATTTT 61.299 55.000 0.00 0.00 38.18 1.82
2113 5437 0.095417 GCGACAGAGCGTGGATTTTC 59.905 55.000 0.00 0.00 0.00 2.29
2114 5438 1.714794 CGACAGAGCGTGGATTTTCT 58.285 50.000 0.00 0.00 0.00 2.52
2115 5439 2.069273 CGACAGAGCGTGGATTTTCTT 58.931 47.619 0.00 0.00 0.00 2.52
2116 5440 3.250744 CGACAGAGCGTGGATTTTCTTA 58.749 45.455 0.00 0.00 0.00 2.10
2117 5441 3.678072 CGACAGAGCGTGGATTTTCTTAA 59.322 43.478 0.00 0.00 0.00 1.85
2118 5442 4.434330 CGACAGAGCGTGGATTTTCTTAAC 60.434 45.833 0.00 0.00 0.00 2.01
2119 5443 4.642429 ACAGAGCGTGGATTTTCTTAACT 58.358 39.130 0.00 0.00 0.00 2.24
2120 5444 5.063880 ACAGAGCGTGGATTTTCTTAACTT 58.936 37.500 0.00 0.00 0.00 2.66
2121 5445 5.531287 ACAGAGCGTGGATTTTCTTAACTTT 59.469 36.000 0.00 0.00 0.00 2.66
2122 5446 6.039382 ACAGAGCGTGGATTTTCTTAACTTTT 59.961 34.615 0.00 0.00 0.00 2.27
2123 5447 6.578919 CAGAGCGTGGATTTTCTTAACTTTTC 59.421 38.462 0.00 0.00 0.00 2.29
2124 5448 6.262273 AGAGCGTGGATTTTCTTAACTTTTCA 59.738 34.615 0.00 0.00 0.00 2.69
2125 5449 6.801575 AGCGTGGATTTTCTTAACTTTTCAA 58.198 32.000 0.00 0.00 0.00 2.69
2126 5450 7.262048 AGCGTGGATTTTCTTAACTTTTCAAA 58.738 30.769 0.00 0.00 0.00 2.69
2127 5451 7.435192 AGCGTGGATTTTCTTAACTTTTCAAAG 59.565 33.333 0.00 0.00 41.73 2.77
2128 5452 7.306574 GCGTGGATTTTCTTAACTTTTCAAAGG 60.307 37.037 4.36 0.00 40.31 3.11
2129 5453 7.918562 CGTGGATTTTCTTAACTTTTCAAAGGA 59.081 33.333 4.36 0.00 40.31 3.36
2130 5454 9.249457 GTGGATTTTCTTAACTTTTCAAAGGAG 57.751 33.333 4.36 0.16 40.31 3.69
2131 5455 8.977412 TGGATTTTCTTAACTTTTCAAAGGAGT 58.023 29.630 4.36 0.00 40.31 3.85
2132 5456 9.817809 GGATTTTCTTAACTTTTCAAAGGAGTT 57.182 29.630 4.36 0.66 40.31 3.01
2135 5459 9.855021 TTTTCTTAACTTTTCAAAGGAGTTCAG 57.145 29.630 4.36 0.00 40.31 3.02
2136 5460 8.575649 TTCTTAACTTTTCAAAGGAGTTCAGT 57.424 30.769 4.36 0.00 40.31 3.41
2137 5461 7.985476 TCTTAACTTTTCAAAGGAGTTCAGTG 58.015 34.615 4.36 0.00 40.31 3.66
2138 5462 5.582689 AACTTTTCAAAGGAGTTCAGTGG 57.417 39.130 4.36 0.00 40.31 4.00
2139 5463 4.855340 ACTTTTCAAAGGAGTTCAGTGGA 58.145 39.130 4.36 0.00 40.31 4.02
2140 5464 4.884164 ACTTTTCAAAGGAGTTCAGTGGAG 59.116 41.667 4.36 0.00 40.31 3.86
2141 5465 4.771114 TTTCAAAGGAGTTCAGTGGAGA 57.229 40.909 0.00 0.00 0.00 3.71
2142 5466 4.771114 TTCAAAGGAGTTCAGTGGAGAA 57.229 40.909 0.00 0.00 0.00 2.87
2143 5467 4.771114 TCAAAGGAGTTCAGTGGAGAAA 57.229 40.909 0.00 0.00 0.00 2.52
2144 5468 5.110814 TCAAAGGAGTTCAGTGGAGAAAA 57.889 39.130 0.00 0.00 0.00 2.29
2145 5469 5.505780 TCAAAGGAGTTCAGTGGAGAAAAA 58.494 37.500 0.00 0.00 0.00 1.94
2163 5487 3.515602 AAAACTGATGCCTGAAGTCCT 57.484 42.857 0.00 0.00 0.00 3.85
2164 5488 3.515602 AAACTGATGCCTGAAGTCCTT 57.484 42.857 0.00 0.00 0.00 3.36
2165 5489 3.515602 AACTGATGCCTGAAGTCCTTT 57.484 42.857 0.00 0.00 0.00 3.11
2166 5490 2.787994 ACTGATGCCTGAAGTCCTTTG 58.212 47.619 0.00 0.00 0.00 2.77
2167 5491 2.373169 ACTGATGCCTGAAGTCCTTTGA 59.627 45.455 0.00 0.00 0.00 2.69
2168 5492 2.746362 CTGATGCCTGAAGTCCTTTGAC 59.254 50.000 0.00 0.00 42.09 3.18
2169 5493 1.734465 GATGCCTGAAGTCCTTTGACG 59.266 52.381 0.00 0.00 46.51 4.35
2170 5494 0.468226 TGCCTGAAGTCCTTTGACGT 59.532 50.000 0.00 0.00 46.51 4.34
2171 5495 0.868406 GCCTGAAGTCCTTTGACGTG 59.132 55.000 0.00 0.00 46.51 4.49
2172 5496 1.810412 GCCTGAAGTCCTTTGACGTGT 60.810 52.381 0.00 0.00 46.51 4.49
2173 5497 2.135933 CCTGAAGTCCTTTGACGTGTC 58.864 52.381 0.00 0.00 46.51 3.67
2174 5498 2.135933 CTGAAGTCCTTTGACGTGTCC 58.864 52.381 0.00 0.00 46.51 4.02
2175 5499 1.483004 TGAAGTCCTTTGACGTGTCCA 59.517 47.619 0.00 0.00 46.51 4.02
2176 5500 2.104111 TGAAGTCCTTTGACGTGTCCAT 59.896 45.455 0.00 0.00 46.51 3.41
2177 5501 2.169832 AGTCCTTTGACGTGTCCATG 57.830 50.000 0.00 0.00 46.51 3.66
2178 5502 1.691976 AGTCCTTTGACGTGTCCATGA 59.308 47.619 0.00 0.00 46.51 3.07
2179 5503 1.798813 GTCCTTTGACGTGTCCATGAC 59.201 52.381 0.00 0.00 0.00 3.06
2180 5504 0.790207 CCTTTGACGTGTCCATGACG 59.210 55.000 0.00 4.06 42.62 4.35
2181 5505 0.163788 CTTTGACGTGTCCATGACGC 59.836 55.000 0.00 2.73 40.56 5.19
2182 5506 1.225376 TTTGACGTGTCCATGACGCC 61.225 55.000 0.00 0.00 39.58 5.68
2183 5507 2.813908 GACGTGTCCATGACGCCC 60.814 66.667 0.00 0.00 39.58 6.13
2184 5508 4.735132 ACGTGTCCATGACGCCCG 62.735 66.667 5.42 1.72 39.58 6.13
2186 5510 4.388499 GTGTCCATGACGCCCGGT 62.388 66.667 0.00 0.00 37.12 5.28
2187 5511 4.386951 TGTCCATGACGCCCGGTG 62.387 66.667 0.00 0.00 34.95 4.94
2198 5522 2.115266 CCCGGTGGCCAAAGACTT 59.885 61.111 7.24 0.00 0.00 3.01
2199 5523 2.268076 CCCGGTGGCCAAAGACTTG 61.268 63.158 7.24 0.00 0.00 3.16
2208 5532 3.614399 CAAAGACTTGGACGAGCCT 57.386 52.632 0.00 0.00 37.63 4.58
2209 5533 1.884235 CAAAGACTTGGACGAGCCTT 58.116 50.000 0.00 0.00 37.63 4.35
2210 5534 1.801178 CAAAGACTTGGACGAGCCTTC 59.199 52.381 0.00 0.00 37.63 3.46
2211 5535 1.048601 AAGACTTGGACGAGCCTTCA 58.951 50.000 0.00 0.00 37.63 3.02
2212 5536 0.318762 AGACTTGGACGAGCCTTCAC 59.681 55.000 0.00 0.00 37.63 3.18
2213 5537 0.670854 GACTTGGACGAGCCTTCACC 60.671 60.000 0.00 0.00 37.63 4.02
2214 5538 1.738099 CTTGGACGAGCCTTCACCG 60.738 63.158 0.00 0.00 37.63 4.94
2215 5539 3.234630 TTGGACGAGCCTTCACCGG 62.235 63.158 0.00 0.00 37.63 5.28
2233 5557 4.129737 CGTGACGCATCTCGGGGT 62.130 66.667 0.00 0.00 43.86 4.95
2234 5558 2.767445 CGTGACGCATCTCGGGGTA 61.767 63.158 0.00 0.00 43.86 3.69
2235 5559 1.514087 GTGACGCATCTCGGGGTAA 59.486 57.895 0.00 0.00 43.86 2.85
2236 5560 0.104304 GTGACGCATCTCGGGGTAAT 59.896 55.000 0.00 0.00 43.86 1.89
2237 5561 0.828022 TGACGCATCTCGGGGTAATT 59.172 50.000 0.00 0.00 43.86 1.40
2238 5562 2.033372 TGACGCATCTCGGGGTAATTA 58.967 47.619 0.00 0.00 43.86 1.40
2239 5563 2.035449 TGACGCATCTCGGGGTAATTAG 59.965 50.000 0.00 0.00 43.86 1.73
2240 5564 2.035576 GACGCATCTCGGGGTAATTAGT 59.964 50.000 0.00 0.00 43.86 2.24
2241 5565 2.035576 ACGCATCTCGGGGTAATTAGTC 59.964 50.000 0.00 0.00 43.86 2.59
2242 5566 2.296471 CGCATCTCGGGGTAATTAGTCT 59.704 50.000 0.00 0.00 33.78 3.24
2243 5567 3.612004 CGCATCTCGGGGTAATTAGTCTC 60.612 52.174 0.00 0.00 33.78 3.36
2244 5568 3.321111 GCATCTCGGGGTAATTAGTCTCA 59.679 47.826 0.00 0.00 0.00 3.27
2245 5569 4.796618 GCATCTCGGGGTAATTAGTCTCAC 60.797 50.000 0.00 0.00 0.00 3.51
2246 5570 3.972133 TCTCGGGGTAATTAGTCTCACA 58.028 45.455 0.00 0.00 0.00 3.58
2247 5571 4.543689 TCTCGGGGTAATTAGTCTCACAT 58.456 43.478 0.00 0.00 0.00 3.21
2248 5572 4.583489 TCTCGGGGTAATTAGTCTCACATC 59.417 45.833 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.641709 TGTTGTCGTTTTGTAGCAATTTGA 58.358 33.333 0.00 0.00 0.00 2.69
1 2 5.940603 TGTTGTCGTTTTGTAGCAATTTG 57.059 34.783 0.00 0.00 0.00 2.32
2 3 6.019156 CCATTGTTGTCGTTTTGTAGCAATTT 60.019 34.615 0.00 0.00 0.00 1.82
3 4 5.461737 CCATTGTTGTCGTTTTGTAGCAATT 59.538 36.000 0.00 0.00 0.00 2.32
5 6 4.355437 CCATTGTTGTCGTTTTGTAGCAA 58.645 39.130 0.00 0.00 0.00 3.91
6 7 3.243234 CCCATTGTTGTCGTTTTGTAGCA 60.243 43.478 0.00 0.00 0.00 3.49
9 10 2.034812 GGCCCATTGTTGTCGTTTTGTA 59.965 45.455 0.00 0.00 0.00 2.41
11 12 1.496934 GGCCCATTGTTGTCGTTTTG 58.503 50.000 0.00 0.00 0.00 2.44
12 13 0.031449 CGGCCCATTGTTGTCGTTTT 59.969 50.000 0.00 0.00 0.00 2.43
13 14 1.657556 CGGCCCATTGTTGTCGTTT 59.342 52.632 0.00 0.00 0.00 3.60
14 15 2.914908 GCGGCCCATTGTTGTCGTT 61.915 57.895 0.00 0.00 0.00 3.85
15 16 3.361977 GCGGCCCATTGTTGTCGT 61.362 61.111 0.00 0.00 0.00 4.34
16 17 4.114997 GGCGGCCCATTGTTGTCG 62.115 66.667 8.12 0.00 0.00 4.35
17 18 3.758931 GGGCGGCCCATTGTTGTC 61.759 66.667 32.90 1.31 44.65 3.18
26 27 0.040204 TATACCTACTAGGGCGGCCC 59.960 60.000 31.03 31.03 45.90 5.80
32 33 3.843027 TCCTCCGTCTATACCTACTAGGG 59.157 52.174 7.06 0.00 40.58 3.53
34 35 5.704978 GGTTTCCTCCGTCTATACCTACTAG 59.295 48.000 0.00 0.00 0.00 2.57
35 36 5.456763 GGGTTTCCTCCGTCTATACCTACTA 60.457 48.000 0.00 0.00 0.00 1.82
36 37 4.468713 GGTTTCCTCCGTCTATACCTACT 58.531 47.826 0.00 0.00 0.00 2.57
37 38 3.571828 GGGTTTCCTCCGTCTATACCTAC 59.428 52.174 0.00 0.00 0.00 3.18
38 39 3.437052 GGGGTTTCCTCCGTCTATACCTA 60.437 52.174 0.00 0.00 0.00 3.08
39 40 2.675583 GGGTTTCCTCCGTCTATACCT 58.324 52.381 0.00 0.00 0.00 3.08
40 41 1.690893 GGGGTTTCCTCCGTCTATACC 59.309 57.143 0.00 0.00 0.00 2.73
52 53 1.304464 CAGCCTTGGAGGGGTTTCC 60.304 63.158 0.00 0.00 35.37 3.13
53 54 4.423231 CAGCCTTGGAGGGGTTTC 57.577 61.111 0.00 0.00 35.37 2.78
63 64 8.655651 TTTTAAAATTAAAGTGACCAGCCTTG 57.344 30.769 0.00 0.00 34.45 3.61
107 108 9.130661 AGCACTATATCTCGCTTATATCAAGAT 57.869 33.333 0.00 0.00 0.00 2.40
108 109 8.512966 AGCACTATATCTCGCTTATATCAAGA 57.487 34.615 0.00 0.00 0.00 3.02
109 110 7.585936 CGAGCACTATATCTCGCTTATATCAAG 59.414 40.741 0.00 0.00 44.30 3.02
110 111 7.410485 CGAGCACTATATCTCGCTTATATCAA 58.590 38.462 0.00 0.00 44.30 2.57
111 112 6.949449 CGAGCACTATATCTCGCTTATATCA 58.051 40.000 0.00 0.00 44.30 2.15
122 123 1.135257 GGCATCGCGAGCACTATATCT 60.135 52.381 24.72 0.00 0.00 1.98
123 124 1.272781 GGCATCGCGAGCACTATATC 58.727 55.000 24.72 8.27 0.00 1.63
124 125 0.108615 GGGCATCGCGAGCACTATAT 60.109 55.000 24.72 1.10 31.20 0.86
125 126 1.289066 GGGCATCGCGAGCACTATA 59.711 57.895 24.72 0.00 31.20 1.31
126 127 2.029666 GGGCATCGCGAGCACTAT 59.970 61.111 24.72 2.54 31.20 2.12
127 128 3.457263 TGGGCATCGCGAGCACTA 61.457 61.111 25.60 14.12 36.08 2.74
134 135 3.709880 TAGAACGGTGGGCATCGCG 62.710 63.158 0.00 0.00 38.78 5.87
136 137 2.519377 TATTAGAACGGTGGGCATCG 57.481 50.000 0.00 0.00 41.46 3.84
137 138 3.058224 GCAATATTAGAACGGTGGGCATC 60.058 47.826 0.00 0.00 0.00 3.91
138 139 2.884639 GCAATATTAGAACGGTGGGCAT 59.115 45.455 0.00 0.00 0.00 4.40
139 140 2.294074 GCAATATTAGAACGGTGGGCA 58.706 47.619 0.00 0.00 0.00 5.36
140 141 1.607148 GGCAATATTAGAACGGTGGGC 59.393 52.381 0.00 0.00 0.00 5.36
142 143 2.878406 CCTGGCAATATTAGAACGGTGG 59.122 50.000 0.00 0.00 0.00 4.61
144 145 3.199071 TGACCTGGCAATATTAGAACGGT 59.801 43.478 0.00 0.00 0.00 4.83
145 146 3.560068 GTGACCTGGCAATATTAGAACGG 59.440 47.826 0.00 0.00 0.00 4.44
146 147 4.442706 AGTGACCTGGCAATATTAGAACG 58.557 43.478 0.00 0.00 0.00 3.95
147 148 7.769044 TCTTTAGTGACCTGGCAATATTAGAAC 59.231 37.037 0.00 0.00 0.00 3.01
148 149 7.857456 TCTTTAGTGACCTGGCAATATTAGAA 58.143 34.615 0.00 0.00 0.00 2.10
149 150 7.432148 TCTTTAGTGACCTGGCAATATTAGA 57.568 36.000 0.00 1.34 0.00 2.10
150 151 7.987458 TCTTCTTTAGTGACCTGGCAATATTAG 59.013 37.037 0.00 0.00 0.00 1.73
151 152 7.857456 TCTTCTTTAGTGACCTGGCAATATTA 58.143 34.615 0.00 0.00 0.00 0.98
152 153 6.721318 TCTTCTTTAGTGACCTGGCAATATT 58.279 36.000 0.00 0.00 0.00 1.28
153 154 6.313519 TCTTCTTTAGTGACCTGGCAATAT 57.686 37.500 0.00 0.00 0.00 1.28
154 155 5.338381 CCTCTTCTTTAGTGACCTGGCAATA 60.338 44.000 0.00 0.00 0.00 1.90
155 156 4.566488 CCTCTTCTTTAGTGACCTGGCAAT 60.566 45.833 0.00 0.00 0.00 3.56
156 157 3.244561 CCTCTTCTTTAGTGACCTGGCAA 60.245 47.826 0.00 0.00 0.00 4.52
157 158 2.303022 CCTCTTCTTTAGTGACCTGGCA 59.697 50.000 0.00 0.00 0.00 4.92
158 159 2.355209 CCCTCTTCTTTAGTGACCTGGC 60.355 54.545 0.00 0.00 0.00 4.85
159 160 2.907042 ACCCTCTTCTTTAGTGACCTGG 59.093 50.000 0.00 0.00 0.00 4.45
161 162 3.325135 CACACCCTCTTCTTTAGTGACCT 59.675 47.826 0.00 0.00 32.76 3.85
164 165 3.314693 ACCACACCCTCTTCTTTAGTGA 58.685 45.455 0.00 0.00 32.76 3.41
166 167 3.244112 CGAACCACACCCTCTTCTTTAGT 60.244 47.826 0.00 0.00 0.00 2.24
168 169 2.549349 GCGAACCACACCCTCTTCTTTA 60.549 50.000 0.00 0.00 0.00 1.85
169 170 1.814248 GCGAACCACACCCTCTTCTTT 60.814 52.381 0.00 0.00 0.00 2.52
170 171 0.250338 GCGAACCACACCCTCTTCTT 60.250 55.000 0.00 0.00 0.00 2.52
171 172 1.371558 GCGAACCACACCCTCTTCT 59.628 57.895 0.00 0.00 0.00 2.85
173 174 1.827399 ATCGCGAACCACACCCTCTT 61.827 55.000 15.24 0.00 0.00 2.85
174 175 2.283529 ATCGCGAACCACACCCTCT 61.284 57.895 15.24 0.00 0.00 3.69
175 176 2.100631 CATCGCGAACCACACCCTC 61.101 63.158 15.24 0.00 0.00 4.30
176 177 2.047274 CATCGCGAACCACACCCT 60.047 61.111 15.24 0.00 0.00 4.34
177 178 3.799755 GCATCGCGAACCACACCC 61.800 66.667 15.24 0.00 0.00 4.61
178 179 3.799755 GGCATCGCGAACCACACC 61.800 66.667 22.59 10.76 0.00 4.16
179 180 3.799755 GGGCATCGCGAACCACAC 61.800 66.667 26.84 10.12 0.00 3.82
180 181 4.321966 TGGGCATCGCGAACCACA 62.322 61.111 26.84 19.17 0.00 4.17
185 186 4.690719 AACGGTGGGCATCGCGAA 62.691 61.111 15.24 0.00 38.78 4.70
187 188 3.709880 TAGAACGGTGGGCATCGCG 62.710 63.158 0.00 0.00 38.78 5.87
188 189 0.814010 ATTAGAACGGTGGGCATCGC 60.814 55.000 0.00 0.00 38.78 4.58
189 190 2.519377 TATTAGAACGGTGGGCATCG 57.481 50.000 0.00 0.00 41.46 3.84
190 191 3.058224 GCAATATTAGAACGGTGGGCATC 60.058 47.826 0.00 0.00 0.00 3.91
191 192 2.884639 GCAATATTAGAACGGTGGGCAT 59.115 45.455 0.00 0.00 0.00 4.40
192 193 2.294074 GCAATATTAGAACGGTGGGCA 58.706 47.619 0.00 0.00 0.00 5.36
215 2966 1.275573 ACGCCCTCTTCTTTAGTGACC 59.724 52.381 0.00 0.00 0.00 4.02
253 3004 8.885494 TTGACTCACCCTAATTTCAATTTTTG 57.115 30.769 0.00 0.00 0.00 2.44
259 3011 6.001460 ACGAATTGACTCACCCTAATTTCAA 58.999 36.000 0.00 0.00 0.00 2.69
265 3017 4.069304 CCAAACGAATTGACTCACCCTAA 58.931 43.478 7.17 0.00 41.85 2.69
288 3040 8.054236 CGTACCATTAGATTTGTATTTGACGTC 58.946 37.037 9.11 9.11 0.00 4.34
293 3045 7.693952 ACTGCGTACCATTAGATTTGTATTTG 58.306 34.615 0.00 0.00 0.00 2.32
298 3050 4.081087 AGGACTGCGTACCATTAGATTTGT 60.081 41.667 0.00 0.00 0.00 2.83
314 3474 1.073923 TGGGAAAGGAAGAAGGACTGC 59.926 52.381 0.00 0.00 0.00 4.40
317 3477 2.613223 CGACTGGGAAAGGAAGAAGGAC 60.613 54.545 0.00 0.00 0.00 3.85
318 3478 1.623811 CGACTGGGAAAGGAAGAAGGA 59.376 52.381 0.00 0.00 0.00 3.36
326 3486 2.027561 TGGTATGTTCGACTGGGAAAGG 60.028 50.000 0.00 0.00 0.00 3.11
330 3490 0.899720 GGTGGTATGTTCGACTGGGA 59.100 55.000 0.00 0.00 0.00 4.37
336 3508 1.536940 TCGTCTGGTGGTATGTTCGA 58.463 50.000 0.00 0.00 0.00 3.71
342 3514 1.217244 GCGGTTCGTCTGGTGGTAT 59.783 57.895 0.00 0.00 0.00 2.73
406 3586 2.110006 GAGGCGATTGAGGGGAGC 59.890 66.667 0.00 0.00 0.00 4.70
442 3622 2.061790 GCTAGAGGAATGGCCAGGGG 62.062 65.000 13.05 0.00 40.02 4.79
444 3624 1.453669 GGCTAGAGGAATGGCCAGG 59.546 63.158 13.05 0.00 45.62 4.45
448 3628 1.069935 GTCGGGCTAGAGGAATGGC 59.930 63.158 0.00 0.00 0.00 4.40
453 3633 1.528542 CCATCGTCGGGCTAGAGGA 60.529 63.158 0.00 7.95 39.03 3.71
493 3673 1.858739 TTAGGGGTGTGGGATGGTGC 61.859 60.000 0.00 0.00 0.00 5.01
494 3674 0.255890 CTTAGGGGTGTGGGATGGTG 59.744 60.000 0.00 0.00 0.00 4.17
496 3676 1.522900 ATCTTAGGGGTGTGGGATGG 58.477 55.000 0.00 0.00 0.00 3.51
517 3698 2.686915 CAGAGAATGCTTCCCCATTGTC 59.313 50.000 4.45 4.45 42.55 3.18
519 3700 2.029623 CCAGAGAATGCTTCCCCATTG 58.970 52.381 0.00 0.00 35.67 2.82
524 3705 1.221840 TCGCCAGAGAATGCTTCCC 59.778 57.895 0.00 0.00 0.00 3.97
537 3718 2.660064 GGAAGGAAGGAGCTCGCCA 61.660 63.158 17.73 0.00 0.00 5.69
539 3720 2.188207 GGGAAGGAAGGAGCTCGC 59.812 66.667 7.83 0.47 0.00 5.03
556 3737 3.669536 GTGAAGGAAGGAAGAGTTGGAG 58.330 50.000 0.00 0.00 0.00 3.86
559 3740 1.801178 GCGTGAAGGAAGGAAGAGTTG 59.199 52.381 0.00 0.00 0.00 3.16
588 3769 5.598417 CCCCTGAATTTAGAATTTAGGTGGG 59.402 44.000 17.63 11.57 34.18 4.61
589 3770 6.321435 GTCCCCTGAATTTAGAATTTAGGTGG 59.679 42.308 17.63 17.12 34.18 4.61
590 3771 7.119387 AGTCCCCTGAATTTAGAATTTAGGTG 58.881 38.462 17.63 10.31 34.18 4.00
618 3799 8.535335 TCTTCTTCTTCACACAATAGCTAGATT 58.465 33.333 0.00 0.00 0.00 2.40
633 3814 4.098044 CGGCTGGTATACTCTTCTTCTTCA 59.902 45.833 2.25 0.00 0.00 3.02
651 3832 3.855689 AGAATTCCATCAAAACGGCTG 57.144 42.857 0.65 0.00 0.00 4.85
798 4001 3.570638 GCGGTCGATCGACGGAGA 61.571 66.667 42.15 13.30 44.73 3.71
803 4014 2.328639 GAGAGGCGGTCGATCGAC 59.671 66.667 34.70 34.70 43.87 4.20
806 4017 2.725008 CAGGAGAGGCGGTCGATC 59.275 66.667 0.00 0.00 0.00 3.69
961 4189 0.401738 TTGCAACCCTCCTCCTCTTG 59.598 55.000 0.00 0.00 0.00 3.02
966 4194 1.539157 CTTTCTTGCAACCCTCCTCC 58.461 55.000 0.00 0.00 0.00 4.30
977 4205 2.806244 TCGTCAACCTTAGCTTTCTTGC 59.194 45.455 0.00 0.00 0.00 4.01
978 4206 3.807622 TGTCGTCAACCTTAGCTTTCTTG 59.192 43.478 0.00 0.00 0.00 3.02
1007 4239 2.801631 GGCCTCATCCTCCTCACGG 61.802 68.421 0.00 0.00 0.00 4.94
1025 4260 2.584418 CGATCACCAGCAGAGCGG 60.584 66.667 0.00 0.00 40.82 5.52
1295 4541 1.203313 CGCGTTGGAACTTCGAACC 59.797 57.895 10.15 0.00 32.45 3.62
1299 4545 0.027063 AAACACGCGTTGGAACTTCG 59.973 50.000 10.22 0.00 34.86 3.79
1319 4565 1.128809 TACCTCTTGGGGTCGCCAAA 61.129 55.000 20.74 11.62 40.48 3.28
1320 4566 1.536907 TACCTCTTGGGGTCGCCAA 60.537 57.895 19.42 19.42 40.48 4.52
1321 4567 1.987855 CTACCTCTTGGGGTCGCCA 60.988 63.158 4.12 4.12 40.48 5.69
1334 4580 2.240160 AGTCGATCACCAGAGTCTACCT 59.760 50.000 0.00 0.00 0.00 3.08
1356 4602 4.463891 ACCAAGCAACAAATCCAATCCTAG 59.536 41.667 0.00 0.00 0.00 3.02
1369 4615 1.895798 TCACCAACAAACCAAGCAACA 59.104 42.857 0.00 0.00 0.00 3.33
1466 4715 7.962918 CCTACGTTCTATTGAAACAAAATCCTG 59.037 37.037 0.00 0.00 33.52 3.86
1473 4722 7.117236 CAGCTTACCTACGTTCTATTGAAACAA 59.883 37.037 0.00 0.00 33.52 2.83
1479 4728 6.097356 TGTTCAGCTTACCTACGTTCTATTG 58.903 40.000 0.00 0.00 0.00 1.90
1484 4741 3.123116 GCTTGTTCAGCTTACCTACGTTC 59.877 47.826 0.00 0.00 46.27 3.95
1500 4757 5.786311 ACAAATGTATTGCTGATGCTTGTT 58.214 33.333 0.00 0.00 40.48 2.83
1502 4759 7.997107 AATACAAATGTATTGCTGATGCTTG 57.003 32.000 15.96 0.00 46.20 4.01
1594 4884 9.835389 GAACTTATGAGGAAGTAGACTAGAGTA 57.165 37.037 0.00 0.00 38.75 2.59
1639 4929 7.477422 GCATACGTAACAAAATACACAGAACTG 59.523 37.037 0.00 0.00 0.00 3.16
1656 4946 2.027561 ACTTCCAGGCAAGCATACGTAA 60.028 45.455 0.00 0.00 0.00 3.18
1666 4956 0.538057 CAGCTTCCACTTCCAGGCAA 60.538 55.000 0.00 0.00 0.00 4.52
1820 5144 4.690719 TCGCCGCCGGTCAAACAT 62.691 61.111 4.45 0.00 34.56 2.71
1838 5162 1.810030 CGCCTACAAGGACTTCCGC 60.810 63.158 0.00 0.00 37.67 5.54
1849 5173 2.997315 AGCTGAGCACCGCCTACA 60.997 61.111 7.39 0.00 0.00 2.74
1850 5174 2.510238 CAGCTGAGCACCGCCTAC 60.510 66.667 8.42 0.00 0.00 3.18
1899 5223 3.000727 GTGCTAAGGTCACGTTAATGCT 58.999 45.455 0.00 0.00 0.00 3.79
1915 5239 4.508128 GGCAGCTACGGCGTGCTA 62.508 66.667 27.47 8.53 44.37 3.49
1955 5279 0.035343 GGGACAAAGAGGTGGGTAGC 60.035 60.000 0.00 0.00 0.00 3.58
1956 5280 1.358152 TGGGACAAAGAGGTGGGTAG 58.642 55.000 0.00 0.00 31.92 3.18
1957 5281 3.581437 TGGGACAAAGAGGTGGGTA 57.419 52.632 0.00 0.00 31.92 3.69
1958 5282 4.430388 TGGGACAAAGAGGTGGGT 57.570 55.556 0.00 0.00 31.92 4.51
1969 5293 6.268847 ACCAGCTTTACATTTATTTTGGGACA 59.731 34.615 0.00 0.00 0.00 4.02
1970 5294 6.697395 ACCAGCTTTACATTTATTTTGGGAC 58.303 36.000 0.00 0.00 0.00 4.46
1971 5295 6.926630 ACCAGCTTTACATTTATTTTGGGA 57.073 33.333 0.00 0.00 0.00 4.37
1972 5296 7.607250 TGTACCAGCTTTACATTTATTTTGGG 58.393 34.615 1.44 0.00 0.00 4.12
1973 5297 9.482627 TTTGTACCAGCTTTACATTTATTTTGG 57.517 29.630 5.90 0.00 29.60 3.28
1978 5302 9.953565 TCTACTTTGTACCAGCTTTACATTTAT 57.046 29.630 5.90 0.00 29.60 1.40
1979 5303 9.431887 CTCTACTTTGTACCAGCTTTACATTTA 57.568 33.333 5.90 0.00 29.60 1.40
1980 5304 8.154856 TCTCTACTTTGTACCAGCTTTACATTT 58.845 33.333 5.90 0.00 29.60 2.32
1981 5305 7.603024 GTCTCTACTTTGTACCAGCTTTACATT 59.397 37.037 5.90 0.00 29.60 2.71
1982 5306 7.097834 GTCTCTACTTTGTACCAGCTTTACAT 58.902 38.462 5.90 0.00 29.60 2.29
1983 5307 6.041182 TGTCTCTACTTTGTACCAGCTTTACA 59.959 38.462 1.44 1.44 0.00 2.41
1984 5308 6.453092 TGTCTCTACTTTGTACCAGCTTTAC 58.547 40.000 0.00 0.00 0.00 2.01
1985 5309 6.659745 TGTCTCTACTTTGTACCAGCTTTA 57.340 37.500 0.00 0.00 0.00 1.85
1986 5310 5.546621 TGTCTCTACTTTGTACCAGCTTT 57.453 39.130 0.00 0.00 0.00 3.51
1987 5311 5.746990 ATGTCTCTACTTTGTACCAGCTT 57.253 39.130 0.00 0.00 0.00 3.74
1988 5312 5.746990 AATGTCTCTACTTTGTACCAGCT 57.253 39.130 0.00 0.00 0.00 4.24
1989 5313 8.494016 AATAAATGTCTCTACTTTGTACCAGC 57.506 34.615 0.00 0.00 0.00 4.85
2004 5328 9.930693 ACTCTCTTCGTCTTAAAATAAATGTCT 57.069 29.630 0.00 0.00 0.00 3.41
2014 5338 9.125906 CGAGAAAAATACTCTCTTCGTCTTAAA 57.874 33.333 0.00 0.00 37.72 1.52
2015 5339 8.295288 ACGAGAAAAATACTCTCTTCGTCTTAA 58.705 33.333 0.00 0.00 37.72 1.85
2016 5340 7.814642 ACGAGAAAAATACTCTCTTCGTCTTA 58.185 34.615 0.00 0.00 37.72 2.10
2017 5341 6.679843 ACGAGAAAAATACTCTCTTCGTCTT 58.320 36.000 0.00 0.00 37.72 3.01
2018 5342 6.256912 ACGAGAAAAATACTCTCTTCGTCT 57.743 37.500 0.00 0.00 37.72 4.18
2019 5343 6.543187 GACGAGAAAAATACTCTCTTCGTC 57.457 41.667 7.76 7.76 37.72 4.20
2022 5346 5.286558 CACCGACGAGAAAAATACTCTCTTC 59.713 44.000 0.00 0.00 37.72 2.87
2023 5347 5.162075 CACCGACGAGAAAAATACTCTCTT 58.838 41.667 0.00 0.00 37.72 2.85
2024 5348 4.380655 CCACCGACGAGAAAAATACTCTCT 60.381 45.833 0.00 0.00 37.72 3.10
2025 5349 3.858238 CCACCGACGAGAAAAATACTCTC 59.142 47.826 0.00 0.00 36.71 3.20
2026 5350 3.846360 CCACCGACGAGAAAAATACTCT 58.154 45.455 0.00 0.00 32.87 3.24
2027 5351 2.347755 GCCACCGACGAGAAAAATACTC 59.652 50.000 0.00 0.00 0.00 2.59
2028 5352 2.028385 AGCCACCGACGAGAAAAATACT 60.028 45.455 0.00 0.00 0.00 2.12
2029 5353 2.093783 CAGCCACCGACGAGAAAAATAC 59.906 50.000 0.00 0.00 0.00 1.89
2030 5354 2.343101 CAGCCACCGACGAGAAAAATA 58.657 47.619 0.00 0.00 0.00 1.40
2031 5355 1.156736 CAGCCACCGACGAGAAAAAT 58.843 50.000 0.00 0.00 0.00 1.82
2032 5356 0.882927 CCAGCCACCGACGAGAAAAA 60.883 55.000 0.00 0.00 0.00 1.94
2033 5357 1.301401 CCAGCCACCGACGAGAAAA 60.301 57.895 0.00 0.00 0.00 2.29
2034 5358 2.342279 CCAGCCACCGACGAGAAA 59.658 61.111 0.00 0.00 0.00 2.52
2035 5359 4.373116 GCCAGCCACCGACGAGAA 62.373 66.667 0.00 0.00 0.00 2.87
2052 5376 0.451783 GGCTAAATGAAGCACGGGTG 59.548 55.000 2.32 0.00 44.64 4.61
2053 5377 1.024579 CGGCTAAATGAAGCACGGGT 61.025 55.000 2.32 0.00 44.64 5.28
2054 5378 1.714899 CCGGCTAAATGAAGCACGGG 61.715 60.000 15.63 0.00 45.07 5.28
2055 5379 1.721487 CCGGCTAAATGAAGCACGG 59.279 57.895 12.03 12.03 44.64 4.94
2056 5380 0.096976 CACCGGCTAAATGAAGCACG 59.903 55.000 0.00 3.57 44.64 5.34
2057 5381 1.448985 TCACCGGCTAAATGAAGCAC 58.551 50.000 0.00 0.00 44.64 4.40
2058 5382 2.016318 CATCACCGGCTAAATGAAGCA 58.984 47.619 0.00 0.00 44.64 3.91
2059 5383 2.017049 ACATCACCGGCTAAATGAAGC 58.983 47.619 0.00 0.00 41.99 3.86
2060 5384 3.560068 GGTACATCACCGGCTAAATGAAG 59.440 47.826 0.00 0.00 37.63 3.02
2061 5385 3.537580 GGTACATCACCGGCTAAATGAA 58.462 45.455 0.00 0.00 37.63 2.57
2062 5386 3.188159 GGTACATCACCGGCTAAATGA 57.812 47.619 0.00 0.00 37.63 2.57
2082 5406 2.349886 GCTCTGTCGCCAAATAGAGTTG 59.650 50.000 0.00 0.00 39.04 3.16
2083 5407 2.622436 GCTCTGTCGCCAAATAGAGTT 58.378 47.619 0.00 0.00 39.04 3.01
2084 5408 1.469940 CGCTCTGTCGCCAAATAGAGT 60.470 52.381 0.00 0.00 39.04 3.24
2085 5409 1.203928 CGCTCTGTCGCCAAATAGAG 58.796 55.000 0.00 0.00 39.64 2.43
2086 5410 0.530744 ACGCTCTGTCGCCAAATAGA 59.469 50.000 0.00 0.00 0.00 1.98
2087 5411 0.647410 CACGCTCTGTCGCCAAATAG 59.353 55.000 0.00 0.00 0.00 1.73
2088 5412 0.739462 CCACGCTCTGTCGCCAAATA 60.739 55.000 0.00 0.00 0.00 1.40
2089 5413 2.034879 CCACGCTCTGTCGCCAAAT 61.035 57.895 0.00 0.00 0.00 2.32
2090 5414 2.449031 ATCCACGCTCTGTCGCCAAA 62.449 55.000 0.00 0.00 0.00 3.28
2091 5415 2.449031 AATCCACGCTCTGTCGCCAA 62.449 55.000 0.00 0.00 0.00 4.52
2092 5416 2.449031 AAATCCACGCTCTGTCGCCA 62.449 55.000 0.00 0.00 0.00 5.69
2093 5417 1.298859 AAAATCCACGCTCTGTCGCC 61.299 55.000 0.00 0.00 0.00 5.54
2094 5418 0.095417 GAAAATCCACGCTCTGTCGC 59.905 55.000 0.00 0.00 0.00 5.19
2095 5419 1.714794 AGAAAATCCACGCTCTGTCG 58.285 50.000 0.00 0.00 0.00 4.35
2096 5420 4.691216 AGTTAAGAAAATCCACGCTCTGTC 59.309 41.667 0.00 0.00 0.00 3.51
2097 5421 4.642429 AGTTAAGAAAATCCACGCTCTGT 58.358 39.130 0.00 0.00 0.00 3.41
2098 5422 5.613358 AAGTTAAGAAAATCCACGCTCTG 57.387 39.130 0.00 0.00 0.00 3.35
2099 5423 6.262273 TGAAAAGTTAAGAAAATCCACGCTCT 59.738 34.615 0.00 0.00 0.00 4.09
2100 5424 6.435428 TGAAAAGTTAAGAAAATCCACGCTC 58.565 36.000 0.00 0.00 0.00 5.03
2101 5425 6.385649 TGAAAAGTTAAGAAAATCCACGCT 57.614 33.333 0.00 0.00 0.00 5.07
2102 5426 7.306574 CCTTTGAAAAGTTAAGAAAATCCACGC 60.307 37.037 2.33 0.00 34.20 5.34
2103 5427 7.918562 TCCTTTGAAAAGTTAAGAAAATCCACG 59.081 33.333 2.33 0.00 34.20 4.94
2104 5428 9.249457 CTCCTTTGAAAAGTTAAGAAAATCCAC 57.751 33.333 2.33 0.00 34.20 4.02
2105 5429 8.977412 ACTCCTTTGAAAAGTTAAGAAAATCCA 58.023 29.630 2.33 0.00 34.20 3.41
2106 5430 9.817809 AACTCCTTTGAAAAGTTAAGAAAATCC 57.182 29.630 2.33 0.00 34.20 3.01
2109 5433 9.855021 CTGAACTCCTTTGAAAAGTTAAGAAAA 57.145 29.630 2.07 0.00 34.60 2.29
2110 5434 9.020731 ACTGAACTCCTTTGAAAAGTTAAGAAA 57.979 29.630 11.88 0.00 35.75 2.52
2111 5435 8.458843 CACTGAACTCCTTTGAAAAGTTAAGAA 58.541 33.333 11.88 0.00 35.75 2.52
2112 5436 7.067008 CCACTGAACTCCTTTGAAAAGTTAAGA 59.933 37.037 11.88 0.00 35.75 2.10
2113 5437 7.067008 TCCACTGAACTCCTTTGAAAAGTTAAG 59.933 37.037 5.65 5.65 37.46 1.85
2114 5438 6.887545 TCCACTGAACTCCTTTGAAAAGTTAA 59.112 34.615 2.33 0.00 33.54 2.01
2115 5439 6.419791 TCCACTGAACTCCTTTGAAAAGTTA 58.580 36.000 2.33 0.00 33.54 2.24
2116 5440 5.261216 TCCACTGAACTCCTTTGAAAAGTT 58.739 37.500 2.33 0.00 36.00 2.66
2117 5441 4.855340 TCCACTGAACTCCTTTGAAAAGT 58.145 39.130 2.33 0.00 34.20 2.66
2118 5442 5.126067 TCTCCACTGAACTCCTTTGAAAAG 58.874 41.667 0.00 0.00 35.79 2.27
2119 5443 5.110814 TCTCCACTGAACTCCTTTGAAAA 57.889 39.130 0.00 0.00 0.00 2.29
2120 5444 4.771114 TCTCCACTGAACTCCTTTGAAA 57.229 40.909 0.00 0.00 0.00 2.69
2121 5445 4.771114 TTCTCCACTGAACTCCTTTGAA 57.229 40.909 0.00 0.00 0.00 2.69
2122 5446 4.771114 TTTCTCCACTGAACTCCTTTGA 57.229 40.909 0.00 0.00 0.00 2.69
2123 5447 5.835113 TTTTTCTCCACTGAACTCCTTTG 57.165 39.130 0.00 0.00 0.00 2.77
2142 5466 3.837355 AGGACTTCAGGCATCAGTTTTT 58.163 40.909 0.00 0.00 0.00 1.94
2143 5467 3.515602 AGGACTTCAGGCATCAGTTTT 57.484 42.857 0.00 0.00 0.00 2.43
2144 5468 3.515602 AAGGACTTCAGGCATCAGTTT 57.484 42.857 0.00 0.00 0.00 2.66
2145 5469 3.152341 CAAAGGACTTCAGGCATCAGTT 58.848 45.455 0.00 0.00 0.00 3.16
2146 5470 2.373169 TCAAAGGACTTCAGGCATCAGT 59.627 45.455 0.00 0.00 0.00 3.41
2147 5471 2.746362 GTCAAAGGACTTCAGGCATCAG 59.254 50.000 0.00 0.00 40.99 2.90
2148 5472 2.783135 GTCAAAGGACTTCAGGCATCA 58.217 47.619 0.00 0.00 40.99 3.07
2149 5473 1.734465 CGTCAAAGGACTTCAGGCATC 59.266 52.381 0.00 0.00 42.05 3.91
2150 5474 1.072331 ACGTCAAAGGACTTCAGGCAT 59.928 47.619 0.00 0.00 42.05 4.40
2151 5475 0.468226 ACGTCAAAGGACTTCAGGCA 59.532 50.000 0.00 0.00 42.05 4.75
2152 5476 0.868406 CACGTCAAAGGACTTCAGGC 59.132 55.000 0.00 0.00 42.05 4.85
2153 5477 2.135933 GACACGTCAAAGGACTTCAGG 58.864 52.381 0.00 0.00 42.05 3.86
2154 5478 2.135933 GGACACGTCAAAGGACTTCAG 58.864 52.381 0.00 0.00 42.05 3.02
2155 5479 1.483004 TGGACACGTCAAAGGACTTCA 59.517 47.619 0.00 0.00 42.05 3.02
2156 5480 2.234300 TGGACACGTCAAAGGACTTC 57.766 50.000 0.00 0.00 42.05 3.01
2157 5481 2.104111 TCATGGACACGTCAAAGGACTT 59.896 45.455 0.00 0.00 42.05 3.01
2158 5482 1.691976 TCATGGACACGTCAAAGGACT 59.308 47.619 0.00 0.00 42.05 3.85
2159 5483 1.798813 GTCATGGACACGTCAAAGGAC 59.201 52.381 0.00 0.99 35.20 3.85
2160 5484 1.604438 CGTCATGGACACGTCAAAGGA 60.604 52.381 0.00 0.00 32.09 3.36
2161 5485 0.790207 CGTCATGGACACGTCAAAGG 59.210 55.000 0.00 0.00 32.09 3.11
2162 5486 0.163788 GCGTCATGGACACGTCAAAG 59.836 55.000 7.20 0.00 39.54 2.77
2163 5487 1.225376 GGCGTCATGGACACGTCAAA 61.225 55.000 5.27 0.00 41.57 2.69
2164 5488 1.666553 GGCGTCATGGACACGTCAA 60.667 57.895 5.27 0.00 41.57 3.18
2165 5489 2.048597 GGCGTCATGGACACGTCA 60.049 61.111 5.27 0.00 41.57 4.35
2166 5490 2.813908 GGGCGTCATGGACACGTC 60.814 66.667 7.20 4.59 41.21 4.34
2167 5491 4.735132 CGGGCGTCATGGACACGT 62.735 66.667 7.20 0.00 39.54 4.49
2169 5493 4.388499 ACCGGGCGTCATGGACAC 62.388 66.667 6.32 0.00 32.09 3.67
2170 5494 4.386951 CACCGGGCGTCATGGACA 62.387 66.667 6.32 0.00 32.09 4.02
2181 5505 2.115266 AAGTCTTTGGCCACCGGG 59.885 61.111 3.88 0.00 37.18 5.73
2182 5506 2.268076 CCAAGTCTTTGGCCACCGG 61.268 63.158 3.88 0.00 46.84 5.28
2183 5507 3.354678 CCAAGTCTTTGGCCACCG 58.645 61.111 3.88 0.00 46.84 4.94
2190 5514 1.801178 GAAGGCTCGTCCAAGTCTTTG 59.199 52.381 0.00 0.00 41.18 2.77
2191 5515 1.416401 TGAAGGCTCGTCCAAGTCTTT 59.584 47.619 0.00 0.00 41.18 2.52
2192 5516 1.048601 TGAAGGCTCGTCCAAGTCTT 58.951 50.000 0.00 0.00 43.71 3.01
2193 5517 0.318762 GTGAAGGCTCGTCCAAGTCT 59.681 55.000 0.00 0.00 37.29 3.24
2194 5518 0.670854 GGTGAAGGCTCGTCCAAGTC 60.671 60.000 0.00 0.00 37.29 3.01
2195 5519 1.371558 GGTGAAGGCTCGTCCAAGT 59.628 57.895 0.00 0.00 37.29 3.16
2196 5520 1.738099 CGGTGAAGGCTCGTCCAAG 60.738 63.158 0.00 0.00 37.29 3.61
2197 5521 2.342279 CGGTGAAGGCTCGTCCAA 59.658 61.111 0.00 0.00 37.29 3.53
2198 5522 3.691342 CCGGTGAAGGCTCGTCCA 61.691 66.667 0.00 0.00 37.29 4.02
2216 5540 2.274232 TTACCCCGAGATGCGTCACG 62.274 60.000 17.48 17.48 38.67 4.35
2217 5541 0.104304 ATTACCCCGAGATGCGTCAC 59.896 55.000 8.99 0.21 38.67 3.67
2218 5542 0.828022 AATTACCCCGAGATGCGTCA 59.172 50.000 8.99 0.00 38.67 4.35
2219 5543 2.035576 ACTAATTACCCCGAGATGCGTC 59.964 50.000 0.00 0.00 38.67 5.19
2220 5544 2.035576 GACTAATTACCCCGAGATGCGT 59.964 50.000 0.00 0.00 38.67 5.24
2221 5545 2.296471 AGACTAATTACCCCGAGATGCG 59.704 50.000 0.00 0.00 40.47 4.73
2222 5546 3.321111 TGAGACTAATTACCCCGAGATGC 59.679 47.826 0.00 0.00 0.00 3.91
2223 5547 4.341235 TGTGAGACTAATTACCCCGAGATG 59.659 45.833 0.00 0.00 0.00 2.90
2224 5548 4.543689 TGTGAGACTAATTACCCCGAGAT 58.456 43.478 0.00 0.00 0.00 2.75
2225 5549 3.972133 TGTGAGACTAATTACCCCGAGA 58.028 45.455 0.00 0.00 0.00 4.04
2226 5550 4.872664 GATGTGAGACTAATTACCCCGAG 58.127 47.826 0.00 0.00 0.00 4.63
2227 5551 4.931661 GATGTGAGACTAATTACCCCGA 57.068 45.455 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.