Multiple sequence alignment - TraesCS7D01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G202300 chr7D 100.000 2228 0 0 1 2228 161041108 161038881 0.000000e+00 4115
1 TraesCS7D01G202300 chr7D 83.797 1259 114 32 333 1557 161058099 161056897 0.000000e+00 1112
2 TraesCS7D01G202300 chr7D 86.454 753 71 19 657 1390 161061047 161060307 0.000000e+00 797
3 TraesCS7D01G202300 chr7D 93.952 248 15 0 1981 2228 160984268 160984021 2.090000e-100 375
4 TraesCS7D01G202300 chr7D 87.013 231 24 3 1006 1230 160979547 160979317 2.840000e-64 255
5 TraesCS7D01G202300 chr7D 84.000 150 20 3 28 177 615209963 615209818 8.290000e-30 141
6 TraesCS7D01G202300 chr7D 84.000 150 20 3 28 177 616958001 616957856 8.290000e-30 141
7 TraesCS7D01G202300 chr7B 84.909 1259 102 30 333 1557 123285743 123284539 0.000000e+00 1192
8 TraesCS7D01G202300 chr7B 87.243 729 65 17 657 1366 123288647 123287928 0.000000e+00 806
9 TraesCS7D01G202300 chr7B 92.737 358 26 0 1558 1915 123284486 123284129 3.280000e-143 518
10 TraesCS7D01G202300 chr7B 87.879 231 22 3 1006 1230 123278359 123278129 1.310000e-67 267
11 TraesCS7D01G202300 chr7A 84.581 895 95 27 664 1538 162454553 162453682 0.000000e+00 848
12 TraesCS7D01G202300 chr7A 82.772 1010 85 50 280 1228 162415119 162414138 0.000000e+00 819
13 TraesCS7D01G202300 chr7A 86.667 420 54 1 1558 1977 162412922 162412505 4.330000e-127 464
14 TraesCS7D01G202300 chr7A 86.463 229 25 3 1008 1230 162400453 162400225 1.710000e-61 246
15 TraesCS7D01G202300 chr7A 88.344 163 3 4 1270 1428 162414139 162413989 4.890000e-42 182
16 TraesCS7D01G202300 chr7A 86.076 158 13 4 19 175 162415652 162415503 6.370000e-36 161
17 TraesCS7D01G202300 chr2D 92.369 249 18 1 1980 2228 293280807 293281054 9.790000e-94 353
18 TraesCS7D01G202300 chr2D 92.032 251 16 4 1980 2228 489598190 489598438 1.270000e-92 350
19 TraesCS7D01G202300 chr2D 89.024 246 25 2 1982 2226 620402419 620402175 1.000000e-78 303
20 TraesCS7D01G202300 chr6D 89.723 253 25 1 1976 2228 18360119 18360370 2.760000e-84 322
21 TraesCS7D01G202300 chr2A 90.244 246 24 0 1981 2226 639035566 639035321 2.760000e-84 322
22 TraesCS7D01G202300 chr6A 89.113 248 27 0 1981 2228 544852062 544851815 2.150000e-80 309
23 TraesCS7D01G202300 chr5D 89.388 245 26 0 1984 2228 315447349 315447105 2.150000e-80 309
24 TraesCS7D01G202300 chr3A 88.400 250 28 1 1980 2228 8970101 8969852 1.290000e-77 300
25 TraesCS7D01G202300 chr1A 81.818 176 25 6 1 175 79303282 79303451 8.290000e-30 141
26 TraesCS7D01G202300 chr1A 83.333 156 21 5 21 175 95677604 95677453 2.980000e-29 139
27 TraesCS7D01G202300 chr4D 83.333 150 24 1 28 177 73599007 73598859 1.070000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G202300 chr7D 161038881 161041108 2227 True 4115.000000 4115 100.000000 1 2228 1 chr7D.!!$R3 2227
1 TraesCS7D01G202300 chr7D 161056897 161061047 4150 True 954.500000 1112 85.125500 333 1557 2 chr7D.!!$R6 1224
2 TraesCS7D01G202300 chr7B 123284129 123288647 4518 True 838.666667 1192 88.296333 333 1915 3 chr7B.!!$R2 1582
3 TraesCS7D01G202300 chr7A 162453682 162454553 871 True 848.000000 848 84.581000 664 1538 1 chr7A.!!$R2 874
4 TraesCS7D01G202300 chr7A 162412505 162415652 3147 True 406.500000 819 85.964750 19 1977 4 chr7A.!!$R3 1958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 262 0.031917 TTCTGGACGGGGGCAGTATA 60.032 55.0 0.0 0.0 0.0 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 9062 0.037697 TGACGGTCGAGTGGAATTGG 60.038 55.0 3.34 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 4.627058 TCGAGAGTGCAAAAGTTCACATA 58.373 39.130 0.00 0.00 35.76 2.29
73 74 4.208253 GTGCAAAAGTTCACATAAAACCCG 59.792 41.667 0.00 0.00 33.63 5.28
74 75 4.098044 TGCAAAAGTTCACATAAAACCCGA 59.902 37.500 0.00 0.00 0.00 5.14
75 76 5.044558 GCAAAAGTTCACATAAAACCCGAA 58.955 37.500 0.00 0.00 0.00 4.30
76 77 5.520649 GCAAAAGTTCACATAAAACCCGAAA 59.479 36.000 0.00 0.00 0.00 3.46
77 78 6.508880 GCAAAAGTTCACATAAAACCCGAAAC 60.509 38.462 0.00 0.00 0.00 2.78
78 79 5.838531 AAGTTCACATAAAACCCGAAACA 57.161 34.783 0.00 0.00 0.00 2.83
80 81 6.399639 AGTTCACATAAAACCCGAAACAAT 57.600 33.333 0.00 0.00 0.00 2.71
131 132 9.956720 GCTACTTTGCAAACATATATGAGAATT 57.043 29.630 19.63 5.97 0.00 2.17
163 165 2.704725 ACATTTTGACCATGACACGC 57.295 45.000 0.00 0.00 0.00 5.34
173 175 2.200899 CCATGACACGCGAATGTATGA 58.799 47.619 15.93 0.00 31.24 2.15
174 176 2.802247 CCATGACACGCGAATGTATGAT 59.198 45.455 15.93 0.00 31.24 2.45
175 177 3.987220 CCATGACACGCGAATGTATGATA 59.013 43.478 15.93 0.00 31.24 2.15
176 178 4.627035 CCATGACACGCGAATGTATGATAT 59.373 41.667 15.93 0.00 31.24 1.63
178 180 6.347644 CCATGACACGCGAATGTATGATATTT 60.348 38.462 15.93 0.00 31.24 1.40
179 181 6.597262 TGACACGCGAATGTATGATATTTT 57.403 33.333 15.93 0.00 31.24 1.82
180 182 7.010697 TGACACGCGAATGTATGATATTTTT 57.989 32.000 15.93 0.00 31.24 1.94
181 183 7.123190 TGACACGCGAATGTATGATATTTTTC 58.877 34.615 15.93 0.00 31.24 2.29
182 184 7.011016 TGACACGCGAATGTATGATATTTTTCT 59.989 33.333 15.93 0.00 31.24 2.52
183 185 7.693952 ACACGCGAATGTATGATATTTTTCTT 58.306 30.769 15.93 0.00 0.00 2.52
184 186 8.181573 ACACGCGAATGTATGATATTTTTCTTT 58.818 29.630 15.93 0.00 0.00 2.52
186 188 9.567848 ACGCGAATGTATGATATTTTTCTTTTT 57.432 25.926 15.93 0.00 0.00 1.94
187 189 9.819750 CGCGAATGTATGATATTTTTCTTTTTG 57.180 29.630 0.00 0.00 0.00 2.44
215 217 6.127810 ACGAATGTATGATGTAGTGTACGT 57.872 37.500 0.00 0.00 0.00 3.57
246 248 9.933723 AGTTGGATTATTTTTCTGAATTTCTGG 57.066 29.630 3.79 0.00 0.00 3.86
248 250 9.927668 TTGGATTATTTTTCTGAATTTCTGGAC 57.072 29.630 3.79 0.00 0.00 4.02
251 253 4.846779 TTTTTCTGAATTTCTGGACGGG 57.153 40.909 3.79 0.00 0.00 5.28
252 254 2.489938 TTCTGAATTTCTGGACGGGG 57.510 50.000 3.79 0.00 0.00 5.73
253 255 0.618458 TCTGAATTTCTGGACGGGGG 59.382 55.000 3.79 0.00 0.00 5.40
254 256 1.001393 TGAATTTCTGGACGGGGGC 60.001 57.895 0.00 0.00 0.00 5.80
256 258 1.000896 AATTTCTGGACGGGGGCAG 60.001 57.895 0.00 0.00 0.00 4.85
258 260 0.912487 ATTTCTGGACGGGGGCAGTA 60.912 55.000 0.00 0.00 0.00 2.74
260 262 0.031917 TTCTGGACGGGGGCAGTATA 60.032 55.000 0.00 0.00 0.00 1.47
261 263 0.031917 TCTGGACGGGGGCAGTATAA 60.032 55.000 0.00 0.00 0.00 0.98
262 264 0.393077 CTGGACGGGGGCAGTATAAG 59.607 60.000 0.00 0.00 0.00 1.73
263 265 0.031917 TGGACGGGGGCAGTATAAGA 60.032 55.000 0.00 0.00 0.00 2.10
267 269 0.462789 CGGGGGCAGTATAAGACGTT 59.537 55.000 0.00 0.00 0.00 3.99
269 271 2.678769 CGGGGGCAGTATAAGACGTTTT 60.679 50.000 0.00 0.00 0.00 2.43
270 272 3.430651 CGGGGGCAGTATAAGACGTTTTA 60.431 47.826 0.52 0.52 0.00 1.52
272 274 5.128205 GGGGGCAGTATAAGACGTTTTAAT 58.872 41.667 2.33 0.00 0.00 1.40
273 275 5.591472 GGGGGCAGTATAAGACGTTTTAATT 59.409 40.000 2.33 0.00 0.00 1.40
275 277 6.316890 GGGGCAGTATAAGACGTTTTAATTCA 59.683 38.462 2.33 0.00 0.00 2.57
276 278 7.184779 GGGCAGTATAAGACGTTTTAATTCAC 58.815 38.462 2.33 0.12 0.00 3.18
277 279 7.184779 GGCAGTATAAGACGTTTTAATTCACC 58.815 38.462 2.33 0.00 0.00 4.02
278 280 7.148373 GGCAGTATAAGACGTTTTAATTCACCA 60.148 37.037 2.33 0.00 0.00 4.17
310 621 1.787012 TAAAAGACGCCACGTTCCTC 58.213 50.000 0.00 0.00 41.37 3.71
322 633 4.020378 TTCCTCGCGCCGCAAAAC 62.020 61.111 10.75 0.00 0.00 2.43
328 639 4.700365 GCGCCGCAAAACCCAGTC 62.700 66.667 3.15 0.00 0.00 3.51
329 640 4.038080 CGCCGCAAAACCCAGTCC 62.038 66.667 0.00 0.00 0.00 3.85
362 2979 4.383861 CAGGTCGCAGCAGCCAGA 62.384 66.667 0.00 0.00 37.52 3.86
363 2980 4.385405 AGGTCGCAGCAGCCAGAC 62.385 66.667 0.00 0.00 37.52 3.51
364 2981 4.687215 GGTCGCAGCAGCCAGACA 62.687 66.667 10.40 0.00 34.15 3.41
395 3012 2.028930 CGATAGAGCCCTACCATCCAAC 60.029 54.545 0.00 0.00 39.76 3.77
398 3015 1.996070 GAGCCCTACCATCCAACCCC 61.996 65.000 0.00 0.00 0.00 4.95
517 3156 4.383173 GGGAAAGAACCACTCGAAAAGTA 58.617 43.478 0.00 0.00 36.07 2.24
520 3159 3.041508 AGAACCACTCGAAAAGTAGCC 57.958 47.619 0.00 0.00 36.07 3.93
568 3207 5.333568 GCGCGGTCCTACGAAAATTATTTAT 60.334 40.000 8.83 0.00 35.47 1.40
570 3209 6.368213 GCGGTCCTACGAAAATTATTTATGG 58.632 40.000 0.00 0.00 35.47 2.74
606 3261 6.697395 TGTTAATCAGTACTGCTAGCTTTGA 58.303 36.000 18.45 12.03 0.00 2.69
613 3268 9.703892 ATCAGTACTGCTAGCTTTGATATAAAG 57.296 33.333 18.45 3.00 0.00 1.85
633 3288 4.382345 AGAAAATAGTACTTCGACCCCG 57.618 45.455 0.00 0.00 37.07 5.73
634 3289 2.591571 AAATAGTACTTCGACCCCGC 57.408 50.000 0.00 0.00 35.37 6.13
635 3290 1.477553 AATAGTACTTCGACCCCGCA 58.522 50.000 0.00 0.00 35.37 5.69
636 3291 1.477553 ATAGTACTTCGACCCCGCAA 58.522 50.000 0.00 0.00 35.37 4.85
637 3292 1.255882 TAGTACTTCGACCCCGCAAA 58.744 50.000 0.00 0.00 35.37 3.68
638 3293 0.393820 AGTACTTCGACCCCGCAAAA 59.606 50.000 0.00 0.00 35.37 2.44
639 3294 1.202675 AGTACTTCGACCCCGCAAAAA 60.203 47.619 0.00 0.00 35.37 1.94
702 3357 2.664851 CAGTGCGCCTTGGAACGA 60.665 61.111 4.18 0.00 0.00 3.85
755 6657 1.876322 GGTGCATGATCTAGTGCTCC 58.124 55.000 17.27 17.27 44.56 4.70
761 6663 3.007290 GCATGATCTAGTGCTCCATGGTA 59.993 47.826 12.58 0.00 38.30 3.25
762 6664 4.564041 CATGATCTAGTGCTCCATGGTAC 58.436 47.826 12.58 9.80 33.08 3.34
763 6665 7.477369 GCATGATCTAGTGCTCCATGGTACA 62.477 48.000 12.58 8.53 39.87 2.90
764 6666 8.694661 GCATGATCTAGTGCTCCATGGTACAT 62.695 46.154 12.58 4.69 39.97 2.29
809 6711 0.740737 GCTACCCATCACCATGCAAC 59.259 55.000 0.00 0.00 0.00 4.17
856 6758 4.242475 CCGCGATGGTGCTTCTATATAAA 58.758 43.478 8.23 0.00 0.00 1.40
867 6769 4.396166 GCTTCTATATAAACGCATGGCCAT 59.604 41.667 14.09 14.09 0.00 4.40
878 6780 3.599602 TGGCCATCCCAAGGAACA 58.400 55.556 0.00 0.00 41.82 3.18
880 6782 0.413037 TGGCCATCCCAAGGAACATT 59.587 50.000 0.00 0.00 41.82 2.71
889 6791 3.164268 CCCAAGGAACATTTCATCCACA 58.836 45.455 0.00 0.00 38.23 4.17
890 6792 3.194116 CCCAAGGAACATTTCATCCACAG 59.806 47.826 0.00 0.00 38.23 3.66
919 6821 4.673311 CCAAGTTAATTCGTTCGTTTGTGG 59.327 41.667 0.00 0.00 0.00 4.17
970 6893 1.018148 TCGAGTGATCGAAGAGGAGC 58.982 55.000 0.00 0.00 43.63 4.70
1007 6930 0.803380 GCTTGAATTGTGATGGCGGC 60.803 55.000 0.00 0.00 0.00 6.53
1121 7044 4.035102 GGCCGGGCAGGTCTTCTT 62.035 66.667 25.33 0.00 42.70 2.52
1235 7158 2.867855 GCCCACACTGACCGAGACA 61.868 63.158 0.00 0.00 0.00 3.41
1240 7163 1.067060 CACACTGACCGAGACACAGAA 59.933 52.381 0.00 0.00 35.85 3.02
1260 7183 7.706179 CACAGAAGAAATCTACTCAGAGAATCC 59.294 40.741 3.79 0.00 36.32 3.01
1261 7184 7.398618 ACAGAAGAAATCTACTCAGAGAATCCA 59.601 37.037 3.79 0.00 36.32 3.41
1264 7187 4.582701 AATCTACTCAGAGAATCCAGCG 57.417 45.455 3.79 0.00 33.22 5.18
1265 7188 2.302260 TCTACTCAGAGAATCCAGCGG 58.698 52.381 3.79 0.00 33.66 5.52
1266 7189 0.747255 TACTCAGAGAATCCAGCGGC 59.253 55.000 3.79 0.00 33.66 6.53
1267 7190 1.591059 CTCAGAGAATCCAGCGGCG 60.591 63.158 0.51 0.51 33.66 6.46
1268 7191 2.009424 CTCAGAGAATCCAGCGGCGA 62.009 60.000 12.98 0.00 33.66 5.54
1319 7286 2.668550 ACCTTTTCAGCCGTCGCC 60.669 61.111 0.00 0.00 34.57 5.54
1338 7305 2.246739 ATCATGATTCGTGGCCGCG 61.247 57.895 32.48 32.48 0.00 6.46
1339 7306 3.940640 CATGATTCGTGGCCGCGG 61.941 66.667 36.19 24.05 0.00 6.46
1392 7373 9.750783 AAGTACTAGATAGTGGTGTTCTTTCTA 57.249 33.333 0.00 0.00 37.10 2.10
1501 8371 5.640357 ACTTCCAATTGTTTTAGCATGCATG 59.360 36.000 22.70 22.70 0.00 4.06
1550 8420 9.394767 TCTCTTATATTTATGCACACAACACAT 57.605 29.630 0.00 0.00 0.00 3.21
1661 8583 9.798994 ATCTTGATGCTGATCTTAAACATTTTC 57.201 29.630 0.00 0.00 0.00 2.29
1676 8598 6.902224 AACATTTTCTAACTTGCAAACCAC 57.098 33.333 0.00 0.00 0.00 4.16
1808 8730 3.231818 TCTCCTTCTCCTTCAACTTCGT 58.768 45.455 0.00 0.00 0.00 3.85
1809 8731 3.005897 TCTCCTTCTCCTTCAACTTCGTG 59.994 47.826 0.00 0.00 0.00 4.35
1824 8746 6.823182 TCAACTTCGTGATGTATGGATCAAAT 59.177 34.615 0.00 0.00 34.11 2.32
1835 8757 5.774690 TGTATGGATCAAATTATGGCCTTCC 59.225 40.000 3.32 0.00 0.00 3.46
1837 8759 3.117701 TGGATCAAATTATGGCCTTCCGA 60.118 43.478 3.32 0.00 34.14 4.55
1870 8792 6.973474 GCGATGCTATTAGATATAGAAACCGT 59.027 38.462 0.00 0.00 0.00 4.83
1894 8816 0.395312 TTCCTTCGGGTTGAGGTCAC 59.605 55.000 0.00 0.00 36.28 3.67
1904 8826 2.763448 GGTTGAGGTCACTAGCAGATCT 59.237 50.000 0.00 0.00 0.00 2.75
1937 8859 0.824109 CCGTAGAGGTCAATGCAGGA 59.176 55.000 0.00 0.00 34.51 3.86
1940 8862 2.804572 CGTAGAGGTCAATGCAGGATGG 60.805 54.545 0.00 0.00 35.86 3.51
1944 8866 0.753111 GGTCAATGCAGGATGGACCC 60.753 60.000 16.32 0.40 46.49 4.46
1951 8873 0.685458 GCAGGATGGACCCAAGCATT 60.685 55.000 0.00 0.00 40.05 3.56
1954 8876 2.889045 CAGGATGGACCCAAGCATTATG 59.111 50.000 0.00 0.00 40.05 1.90
1956 8878 1.615392 GATGGACCCAAGCATTATGCC 59.385 52.381 14.10 0.00 46.52 4.40
1977 8899 2.641321 CTGAGGCCATGATCTAATCCCA 59.359 50.000 5.01 0.00 0.00 4.37
1978 8900 2.373169 TGAGGCCATGATCTAATCCCAC 59.627 50.000 5.01 0.00 0.00 4.61
1979 8901 1.707427 AGGCCATGATCTAATCCCACC 59.293 52.381 5.01 0.00 0.00 4.61
1980 8902 1.707427 GGCCATGATCTAATCCCACCT 59.293 52.381 0.00 0.00 0.00 4.00
1981 8903 2.553904 GGCCATGATCTAATCCCACCTG 60.554 54.545 0.00 0.00 0.00 4.00
1982 8904 2.373169 GCCATGATCTAATCCCACCTGA 59.627 50.000 0.00 0.00 0.00 3.86
1983 8905 3.009916 GCCATGATCTAATCCCACCTGAT 59.990 47.826 0.00 0.00 0.00 2.90
1984 8906 4.586884 CCATGATCTAATCCCACCTGATG 58.413 47.826 0.00 0.00 0.00 3.07
1985 8907 4.287845 CCATGATCTAATCCCACCTGATGA 59.712 45.833 0.00 0.00 0.00 2.92
1986 8908 5.045066 CCATGATCTAATCCCACCTGATGAT 60.045 44.000 0.00 0.00 0.00 2.45
1987 8909 5.494390 TGATCTAATCCCACCTGATGATG 57.506 43.478 0.00 0.00 0.00 3.07
1988 8910 5.157395 TGATCTAATCCCACCTGATGATGA 58.843 41.667 0.00 0.00 0.00 2.92
1989 8911 4.963318 TCTAATCCCACCTGATGATGAC 57.037 45.455 0.00 0.00 0.00 3.06
1990 8912 4.297768 TCTAATCCCACCTGATGATGACA 58.702 43.478 0.00 0.00 0.00 3.58
1991 8913 4.909695 TCTAATCCCACCTGATGATGACAT 59.090 41.667 0.00 0.00 39.67 3.06
1992 8914 3.503800 ATCCCACCTGATGATGACATG 57.496 47.619 0.00 0.00 36.82 3.21
1993 8915 2.199208 TCCCACCTGATGATGACATGT 58.801 47.619 0.00 0.00 36.82 3.21
1994 8916 3.383223 TCCCACCTGATGATGACATGTA 58.617 45.455 0.00 0.00 36.82 2.29
1995 8917 3.134623 TCCCACCTGATGATGACATGTAC 59.865 47.826 0.00 0.00 36.82 2.90
1996 8918 3.470709 CCACCTGATGATGACATGTACC 58.529 50.000 0.00 0.00 36.82 3.34
1997 8919 3.135348 CCACCTGATGATGACATGTACCT 59.865 47.826 0.00 0.00 36.82 3.08
1998 8920 4.344968 CCACCTGATGATGACATGTACCTA 59.655 45.833 0.00 0.00 36.82 3.08
1999 8921 5.510349 CCACCTGATGATGACATGTACCTAG 60.510 48.000 0.00 0.00 36.82 3.02
2000 8922 4.590647 ACCTGATGATGACATGTACCTAGG 59.409 45.833 7.41 7.41 36.82 3.02
2001 8923 4.020751 CCTGATGATGACATGTACCTAGGG 60.021 50.000 14.81 0.00 36.82 3.53
2002 8924 4.556697 TGATGATGACATGTACCTAGGGT 58.443 43.478 14.81 0.00 36.95 4.34
2003 8925 5.711698 TGATGATGACATGTACCTAGGGTA 58.288 41.667 14.81 0.12 35.49 3.69
2004 8926 6.140377 TGATGATGACATGTACCTAGGGTAA 58.860 40.000 14.81 0.00 37.08 2.85
2005 8927 5.864418 TGATGACATGTACCTAGGGTAAC 57.136 43.478 14.81 8.89 40.12 2.50
2006 8928 4.340097 TGATGACATGTACCTAGGGTAACG 59.660 45.833 14.81 0.76 40.12 3.18
2007 8929 3.700538 TGACATGTACCTAGGGTAACGT 58.299 45.455 14.81 6.89 40.12 3.99
2008 8930 3.696051 TGACATGTACCTAGGGTAACGTC 59.304 47.826 14.81 13.80 40.12 4.34
2009 8931 3.696051 GACATGTACCTAGGGTAACGTCA 59.304 47.826 14.81 1.85 40.12 4.35
2010 8932 4.284178 ACATGTACCTAGGGTAACGTCAT 58.716 43.478 14.81 4.07 40.12 3.06
2011 8933 5.448654 ACATGTACCTAGGGTAACGTCATA 58.551 41.667 14.81 0.00 40.12 2.15
2012 8934 5.533903 ACATGTACCTAGGGTAACGTCATAG 59.466 44.000 14.81 1.18 40.12 2.23
2013 8935 4.464008 TGTACCTAGGGTAACGTCATAGG 58.536 47.826 14.81 10.83 40.12 2.57
2014 8936 2.314246 ACCTAGGGTAACGTCATAGGC 58.686 52.381 14.81 0.00 37.16 3.93
2015 8937 1.617357 CCTAGGGTAACGTCATAGGCC 59.383 57.143 0.00 0.00 35.44 5.19
2016 8938 2.595238 CTAGGGTAACGTCATAGGCCT 58.405 52.381 11.78 11.78 35.44 5.19
2017 8939 1.120530 AGGGTAACGTCATAGGCCTG 58.879 55.000 17.99 0.00 37.60 4.85
2018 8940 1.117150 GGGTAACGTCATAGGCCTGA 58.883 55.000 17.99 2.17 37.60 3.86
2019 8941 1.202498 GGGTAACGTCATAGGCCTGAC 60.202 57.143 17.99 15.49 41.73 3.51
2020 8942 1.202498 GGTAACGTCATAGGCCTGACC 60.202 57.143 17.99 5.88 42.06 4.02
2031 8953 4.051167 CCTGACCTGCATGCCCCA 62.051 66.667 16.68 6.73 0.00 4.96
2032 8954 2.753043 CTGACCTGCATGCCCCAC 60.753 66.667 16.68 5.20 0.00 4.61
2033 8955 4.365111 TGACCTGCATGCCCCACC 62.365 66.667 16.68 1.19 0.00 4.61
2036 8958 4.700448 CCTGCATGCCCCACCCAA 62.700 66.667 16.68 0.00 0.00 4.12
2037 8959 3.072468 CTGCATGCCCCACCCAAG 61.072 66.667 16.68 0.00 0.00 3.61
2038 8960 4.700448 TGCATGCCCCACCCAAGG 62.700 66.667 16.68 0.00 0.00 3.61
2039 8961 4.380945 GCATGCCCCACCCAAGGA 62.381 66.667 6.36 0.00 0.00 3.36
2040 8962 2.362889 CATGCCCCACCCAAGGAC 60.363 66.667 0.00 0.00 0.00 3.85
2041 8963 2.863484 ATGCCCCACCCAAGGACA 60.863 61.111 0.00 0.00 0.00 4.02
2042 8964 2.248374 ATGCCCCACCCAAGGACAT 61.248 57.895 0.00 0.00 0.00 3.06
2043 8965 1.814292 ATGCCCCACCCAAGGACATT 61.814 55.000 0.00 0.00 0.00 2.71
2044 8966 1.143329 TGCCCCACCCAAGGACATTA 61.143 55.000 0.00 0.00 0.00 1.90
2045 8967 0.683179 GCCCCACCCAAGGACATTAC 60.683 60.000 0.00 0.00 0.00 1.89
2046 8968 0.701731 CCCCACCCAAGGACATTACA 59.298 55.000 0.00 0.00 0.00 2.41
2047 8969 1.615919 CCCCACCCAAGGACATTACAC 60.616 57.143 0.00 0.00 0.00 2.90
2048 8970 1.074727 CCCACCCAAGGACATTACACA 59.925 52.381 0.00 0.00 0.00 3.72
2049 8971 2.489985 CCCACCCAAGGACATTACACAA 60.490 50.000 0.00 0.00 0.00 3.33
2050 8972 3.226777 CCACCCAAGGACATTACACAAA 58.773 45.455 0.00 0.00 0.00 2.83
2051 8973 3.639094 CCACCCAAGGACATTACACAAAA 59.361 43.478 0.00 0.00 0.00 2.44
2052 8974 4.261994 CCACCCAAGGACATTACACAAAAG 60.262 45.833 0.00 0.00 0.00 2.27
2053 8975 4.582656 CACCCAAGGACATTACACAAAAGA 59.417 41.667 0.00 0.00 0.00 2.52
2054 8976 4.583073 ACCCAAGGACATTACACAAAAGAC 59.417 41.667 0.00 0.00 0.00 3.01
2055 8977 4.022329 CCCAAGGACATTACACAAAAGACC 60.022 45.833 0.00 0.00 0.00 3.85
2056 8978 4.582656 CCAAGGACATTACACAAAAGACCA 59.417 41.667 0.00 0.00 0.00 4.02
2057 8979 5.068460 CCAAGGACATTACACAAAAGACCAA 59.932 40.000 0.00 0.00 0.00 3.67
2058 8980 6.208644 CAAGGACATTACACAAAAGACCAAG 58.791 40.000 0.00 0.00 0.00 3.61
2059 8981 5.690865 AGGACATTACACAAAAGACCAAGA 58.309 37.500 0.00 0.00 0.00 3.02
2060 8982 5.531287 AGGACATTACACAAAAGACCAAGAC 59.469 40.000 0.00 0.00 0.00 3.01
2061 8983 5.278315 GGACATTACACAAAAGACCAAGACC 60.278 44.000 0.00 0.00 0.00 3.85
2062 8984 4.583073 ACATTACACAAAAGACCAAGACCC 59.417 41.667 0.00 0.00 0.00 4.46
2063 8985 2.818751 ACACAAAAGACCAAGACCCA 57.181 45.000 0.00 0.00 0.00 4.51
2064 8986 2.375146 ACACAAAAGACCAAGACCCAC 58.625 47.619 0.00 0.00 0.00 4.61
2065 8987 2.291282 ACACAAAAGACCAAGACCCACA 60.291 45.455 0.00 0.00 0.00 4.17
2066 8988 2.757868 CACAAAAGACCAAGACCCACAA 59.242 45.455 0.00 0.00 0.00 3.33
2067 8989 3.194542 CACAAAAGACCAAGACCCACAAA 59.805 43.478 0.00 0.00 0.00 2.83
2068 8990 3.447229 ACAAAAGACCAAGACCCACAAAG 59.553 43.478 0.00 0.00 0.00 2.77
2069 8991 3.382083 AAAGACCAAGACCCACAAAGT 57.618 42.857 0.00 0.00 0.00 2.66
2070 8992 3.382083 AAGACCAAGACCCACAAAGTT 57.618 42.857 0.00 0.00 0.00 2.66
2071 8993 4.513406 AAGACCAAGACCCACAAAGTTA 57.487 40.909 0.00 0.00 0.00 2.24
2072 8994 4.513406 AGACCAAGACCCACAAAGTTAA 57.487 40.909 0.00 0.00 0.00 2.01
2073 8995 4.862371 AGACCAAGACCCACAAAGTTAAA 58.138 39.130 0.00 0.00 0.00 1.52
2074 8996 4.643334 AGACCAAGACCCACAAAGTTAAAC 59.357 41.667 0.00 0.00 0.00 2.01
2075 8997 4.345854 ACCAAGACCCACAAAGTTAAACA 58.654 39.130 0.00 0.00 0.00 2.83
2076 8998 4.401202 ACCAAGACCCACAAAGTTAAACAG 59.599 41.667 0.00 0.00 0.00 3.16
2077 8999 4.642885 CCAAGACCCACAAAGTTAAACAGA 59.357 41.667 0.00 0.00 0.00 3.41
2078 9000 5.126384 CCAAGACCCACAAAGTTAAACAGAA 59.874 40.000 0.00 0.00 0.00 3.02
2079 9001 6.265577 CAAGACCCACAAAGTTAAACAGAAG 58.734 40.000 0.00 0.00 0.00 2.85
2080 9002 5.751586 AGACCCACAAAGTTAAACAGAAGA 58.248 37.500 0.00 0.00 0.00 2.87
2081 9003 6.365520 AGACCCACAAAGTTAAACAGAAGAT 58.634 36.000 0.00 0.00 0.00 2.40
2082 9004 7.514721 AGACCCACAAAGTTAAACAGAAGATA 58.485 34.615 0.00 0.00 0.00 1.98
2083 9005 7.444487 AGACCCACAAAGTTAAACAGAAGATAC 59.556 37.037 0.00 0.00 0.00 2.24
2084 9006 6.489022 ACCCACAAAGTTAAACAGAAGATACC 59.511 38.462 0.00 0.00 0.00 2.73
2085 9007 6.348213 CCCACAAAGTTAAACAGAAGATACCG 60.348 42.308 0.00 0.00 0.00 4.02
2086 9008 6.425721 CCACAAAGTTAAACAGAAGATACCGA 59.574 38.462 0.00 0.00 0.00 4.69
2087 9009 7.288672 CACAAAGTTAAACAGAAGATACCGAC 58.711 38.462 0.00 0.00 0.00 4.79
2088 9010 7.170998 CACAAAGTTAAACAGAAGATACCGACT 59.829 37.037 0.00 0.00 0.00 4.18
2089 9011 7.170998 ACAAAGTTAAACAGAAGATACCGACTG 59.829 37.037 0.00 0.00 36.58 3.51
2090 9012 6.585695 AGTTAAACAGAAGATACCGACTGA 57.414 37.500 0.00 0.00 34.88 3.41
2091 9013 6.989659 AGTTAAACAGAAGATACCGACTGAA 58.010 36.000 0.00 0.00 34.88 3.02
2092 9014 7.439381 AGTTAAACAGAAGATACCGACTGAAA 58.561 34.615 0.00 0.00 34.88 2.69
2093 9015 8.095169 AGTTAAACAGAAGATACCGACTGAAAT 58.905 33.333 0.00 0.00 34.88 2.17
2094 9016 6.969828 AAACAGAAGATACCGACTGAAATC 57.030 37.500 0.00 0.00 34.88 2.17
2095 9017 5.012328 ACAGAAGATACCGACTGAAATCC 57.988 43.478 0.00 0.00 34.88 3.01
2096 9018 4.712337 ACAGAAGATACCGACTGAAATCCT 59.288 41.667 0.00 0.00 34.88 3.24
2097 9019 5.163499 ACAGAAGATACCGACTGAAATCCTC 60.163 44.000 0.00 0.00 34.88 3.71
2098 9020 4.956700 AGAAGATACCGACTGAAATCCTCA 59.043 41.667 0.00 0.00 0.00 3.86
2099 9021 5.600484 AGAAGATACCGACTGAAATCCTCAT 59.400 40.000 0.00 0.00 32.14 2.90
2100 9022 5.207110 AGATACCGACTGAAATCCTCATG 57.793 43.478 0.00 0.00 32.14 3.07
2101 9023 4.895889 AGATACCGACTGAAATCCTCATGA 59.104 41.667 0.00 0.00 32.14 3.07
2102 9024 3.981071 ACCGACTGAAATCCTCATGAA 57.019 42.857 0.00 0.00 32.14 2.57
2103 9025 3.866651 ACCGACTGAAATCCTCATGAAG 58.133 45.455 0.00 0.00 32.14 3.02
2104 9026 3.261897 ACCGACTGAAATCCTCATGAAGT 59.738 43.478 0.00 0.00 32.14 3.01
2105 9027 3.620374 CCGACTGAAATCCTCATGAAGTG 59.380 47.826 0.00 0.00 32.14 3.16
2106 9028 3.063180 CGACTGAAATCCTCATGAAGTGC 59.937 47.826 0.00 0.00 32.14 4.40
2107 9029 4.005650 GACTGAAATCCTCATGAAGTGCA 58.994 43.478 0.00 0.00 32.14 4.57
2108 9030 4.401022 ACTGAAATCCTCATGAAGTGCAA 58.599 39.130 0.00 0.00 32.14 4.08
2109 9031 5.014858 ACTGAAATCCTCATGAAGTGCAAT 58.985 37.500 0.00 0.00 32.14 3.56
2110 9032 6.182627 ACTGAAATCCTCATGAAGTGCAATA 58.817 36.000 0.00 0.00 32.14 1.90
2111 9033 6.094603 ACTGAAATCCTCATGAAGTGCAATAC 59.905 38.462 0.00 0.00 32.14 1.89
2112 9034 5.945191 TGAAATCCTCATGAAGTGCAATACA 59.055 36.000 0.00 0.00 0.00 2.29
2113 9035 7.889511 CTGAAATCCTCATGAAGTGCAATACAC 60.890 40.741 0.00 0.00 40.74 2.90
2123 9045 3.980238 GTGCAATACACTCGACAGAAG 57.020 47.619 0.00 0.00 46.41 2.85
2124 9046 3.575630 GTGCAATACACTCGACAGAAGA 58.424 45.455 0.00 0.00 46.41 2.87
2125 9047 4.177026 GTGCAATACACTCGACAGAAGAT 58.823 43.478 0.00 0.00 46.41 2.40
2126 9048 4.032217 GTGCAATACACTCGACAGAAGATG 59.968 45.833 0.00 0.00 46.41 2.90
2127 9049 6.357896 GTGCAATACACTCGACAGAAGATGT 61.358 44.000 0.00 0.00 46.41 3.06
2139 9061 5.446143 ACAGAAGATGTCACTCGGATATC 57.554 43.478 0.00 0.00 42.63 1.63
2140 9062 4.279671 ACAGAAGATGTCACTCGGATATCC 59.720 45.833 12.14 12.14 43.14 2.59
2141 9063 3.829601 AGAAGATGTCACTCGGATATCCC 59.170 47.826 16.36 1.37 43.14 3.85
2142 9064 3.244887 AGATGTCACTCGGATATCCCA 57.755 47.619 16.36 7.34 43.14 4.37
2143 9065 3.576861 AGATGTCACTCGGATATCCCAA 58.423 45.455 16.36 3.82 43.14 4.12
2144 9066 4.163427 AGATGTCACTCGGATATCCCAAT 58.837 43.478 16.36 0.00 43.14 3.16
2145 9067 4.594920 AGATGTCACTCGGATATCCCAATT 59.405 41.667 16.36 0.00 43.14 2.32
2146 9068 4.336889 TGTCACTCGGATATCCCAATTC 57.663 45.455 16.36 3.77 34.14 2.17
2147 9069 3.071023 TGTCACTCGGATATCCCAATTCC 59.929 47.826 16.36 1.58 34.14 3.01
2148 9070 3.071023 GTCACTCGGATATCCCAATTCCA 59.929 47.826 16.36 0.00 34.14 3.53
2149 9071 3.071023 TCACTCGGATATCCCAATTCCAC 59.929 47.826 16.36 0.00 34.14 4.02
2150 9072 3.071602 CACTCGGATATCCCAATTCCACT 59.928 47.826 16.36 0.00 34.14 4.00
2151 9073 3.325135 ACTCGGATATCCCAATTCCACTC 59.675 47.826 16.36 0.00 34.14 3.51
2152 9074 2.299013 TCGGATATCCCAATTCCACTCG 59.701 50.000 16.36 0.00 34.14 4.18
2153 9075 2.299013 CGGATATCCCAATTCCACTCGA 59.701 50.000 16.36 0.00 34.14 4.04
2154 9076 3.665190 GGATATCCCAATTCCACTCGAC 58.335 50.000 11.02 0.00 34.14 4.20
2155 9077 3.557264 GGATATCCCAATTCCACTCGACC 60.557 52.174 11.02 0.00 34.14 4.79
2156 9078 0.178068 ATCCCAATTCCACTCGACCG 59.822 55.000 0.00 0.00 0.00 4.79
2157 9079 1.189524 TCCCAATTCCACTCGACCGT 61.190 55.000 0.00 0.00 0.00 4.83
2158 9080 0.739813 CCCAATTCCACTCGACCGTC 60.740 60.000 0.00 0.00 0.00 4.79
2159 9081 0.037697 CCAATTCCACTCGACCGTCA 60.038 55.000 0.00 0.00 0.00 4.35
2160 9082 1.405526 CCAATTCCACTCGACCGTCAT 60.406 52.381 0.00 0.00 0.00 3.06
2161 9083 2.346803 CAATTCCACTCGACCGTCATT 58.653 47.619 0.00 0.00 0.00 2.57
2162 9084 3.517602 CAATTCCACTCGACCGTCATTA 58.482 45.455 0.00 0.00 0.00 1.90
2163 9085 4.119862 CAATTCCACTCGACCGTCATTAT 58.880 43.478 0.00 0.00 0.00 1.28
2164 9086 3.880047 TTCCACTCGACCGTCATTATT 57.120 42.857 0.00 0.00 0.00 1.40
2165 9087 3.431922 TCCACTCGACCGTCATTATTC 57.568 47.619 0.00 0.00 0.00 1.75
2166 9088 2.756207 TCCACTCGACCGTCATTATTCA 59.244 45.455 0.00 0.00 0.00 2.57
2167 9089 2.858344 CCACTCGACCGTCATTATTCAC 59.142 50.000 0.00 0.00 0.00 3.18
2168 9090 3.428999 CCACTCGACCGTCATTATTCACT 60.429 47.826 0.00 0.00 0.00 3.41
2169 9091 3.791887 CACTCGACCGTCATTATTCACTC 59.208 47.826 0.00 0.00 0.00 3.51
2170 9092 3.036633 CTCGACCGTCATTATTCACTCG 58.963 50.000 0.00 0.00 0.00 4.18
2171 9093 2.117137 CGACCGTCATTATTCACTCGG 58.883 52.381 0.00 0.00 42.94 4.63
2172 9094 2.223409 CGACCGTCATTATTCACTCGGA 60.223 50.000 8.35 0.00 40.90 4.55
2173 9095 3.732774 CGACCGTCATTATTCACTCGGAA 60.733 47.826 8.35 0.00 40.90 4.30
2174 9096 3.782046 ACCGTCATTATTCACTCGGAAG 58.218 45.455 8.35 0.00 39.30 3.46
2175 9097 3.446161 ACCGTCATTATTCACTCGGAAGA 59.554 43.478 8.35 0.00 39.30 2.87
2176 9098 3.797256 CCGTCATTATTCACTCGGAAGAC 59.203 47.826 0.00 0.00 39.30 3.01
2177 9099 4.421058 CGTCATTATTCACTCGGAAGACA 58.579 43.478 0.00 0.00 39.30 3.41
2178 9100 4.862574 CGTCATTATTCACTCGGAAGACAA 59.137 41.667 0.00 0.00 39.30 3.18
2179 9101 5.004821 CGTCATTATTCACTCGGAAGACAAG 59.995 44.000 0.00 0.00 39.30 3.16
2180 9102 6.100004 GTCATTATTCACTCGGAAGACAAGA 58.900 40.000 0.00 0.00 39.30 3.02
2181 9103 6.590292 GTCATTATTCACTCGGAAGACAAGAA 59.410 38.462 0.00 0.00 39.30 2.52
2182 9104 7.278868 GTCATTATTCACTCGGAAGACAAGAAT 59.721 37.037 0.00 0.00 39.30 2.40
2183 9105 7.492669 TCATTATTCACTCGGAAGACAAGAATC 59.507 37.037 0.00 0.00 39.30 2.52
2184 9106 3.594603 TCACTCGGAAGACAAGAATCC 57.405 47.619 0.00 0.00 35.39 3.01
2185 9107 2.897326 TCACTCGGAAGACAAGAATCCA 59.103 45.455 0.00 0.00 35.39 3.41
2186 9108 2.996621 CACTCGGAAGACAAGAATCCAC 59.003 50.000 0.00 0.00 35.39 4.02
2187 9109 2.900546 ACTCGGAAGACAAGAATCCACT 59.099 45.455 0.00 0.00 35.39 4.00
2188 9110 3.056465 ACTCGGAAGACAAGAATCCACTC 60.056 47.826 0.00 0.00 35.39 3.51
2189 9111 2.094700 TCGGAAGACAAGAATCCACTCG 60.095 50.000 0.00 0.00 32.58 4.18
2190 9112 2.622436 GGAAGACAAGAATCCACTCGG 58.378 52.381 0.00 0.00 33.30 4.63
2201 9123 2.281539 TCCACTCGGAGTACACAAGA 57.718 50.000 10.87 0.00 35.91 3.02
2202 9124 1.884579 TCCACTCGGAGTACACAAGAC 59.115 52.381 10.87 0.00 35.91 3.01
2203 9125 1.067776 CCACTCGGAGTACACAAGACC 60.068 57.143 10.87 0.00 0.00 3.85
2204 9126 1.887198 CACTCGGAGTACACAAGACCT 59.113 52.381 10.87 0.00 0.00 3.85
2205 9127 3.079578 CACTCGGAGTACACAAGACCTA 58.920 50.000 10.87 0.00 0.00 3.08
2206 9128 3.127203 CACTCGGAGTACACAAGACCTAG 59.873 52.174 10.87 0.00 0.00 3.02
2207 9129 3.008813 ACTCGGAGTACACAAGACCTAGA 59.991 47.826 9.33 0.00 0.00 2.43
2208 9130 3.607741 TCGGAGTACACAAGACCTAGAG 58.392 50.000 0.00 0.00 0.00 2.43
2209 9131 3.008813 TCGGAGTACACAAGACCTAGAGT 59.991 47.826 0.00 0.00 0.00 3.24
2210 9132 3.374678 CGGAGTACACAAGACCTAGAGTC 59.625 52.174 0.00 0.00 46.71 3.36
2219 9141 2.233305 GACCTAGAGTCACCCCTGAA 57.767 55.000 0.00 0.00 45.55 3.02
2220 9142 2.753247 GACCTAGAGTCACCCCTGAAT 58.247 52.381 0.00 0.00 45.55 2.57
2221 9143 2.432510 GACCTAGAGTCACCCCTGAATG 59.567 54.545 0.00 0.00 45.55 2.67
2222 9144 1.765314 CCTAGAGTCACCCCTGAATGG 59.235 57.143 0.00 0.00 0.00 3.16
2223 9145 1.139853 CTAGAGTCACCCCTGAATGGC 59.860 57.143 0.00 0.00 0.00 4.40
2224 9146 0.842030 AGAGTCACCCCTGAATGGCA 60.842 55.000 0.00 0.00 0.00 4.92
2225 9147 0.038166 GAGTCACCCCTGAATGGCAA 59.962 55.000 0.00 0.00 0.00 4.52
2226 9148 0.251341 AGTCACCCCTGAATGGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
2227 9149 1.303236 TCACCCCTGAATGGCAACG 60.303 57.895 0.00 0.00 42.51 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.374838 GAATGTATTGAATGAGCCTCAATTTTT 57.625 29.630 0.00 0.00 39.89 1.94
21 22 7.067372 TCGAATGTATTGAATGAGCCTCAATTT 59.933 33.333 0.00 0.00 39.89 1.82
22 23 6.543465 TCGAATGTATTGAATGAGCCTCAATT 59.457 34.615 0.00 0.00 39.89 2.32
23 24 6.057533 TCGAATGTATTGAATGAGCCTCAAT 58.942 36.000 0.00 0.00 43.99 2.57
24 25 5.427378 TCGAATGTATTGAATGAGCCTCAA 58.573 37.500 0.00 0.00 37.22 3.02
33 34 6.741992 TTTGCACTCTCGAATGTATTGAAT 57.258 33.333 0.00 0.00 0.00 2.57
140 142 4.083537 GCGTGTCATGGTCAAAATGTAAGA 60.084 41.667 0.00 0.00 0.00 2.10
142 144 3.364465 CGCGTGTCATGGTCAAAATGTAA 60.364 43.478 0.00 0.00 0.00 2.41
147 149 1.300481 TTCGCGTGTCATGGTCAAAA 58.700 45.000 5.77 0.00 0.00 2.44
179 181 9.611284 CATCATACATTCGTTTCTCAAAAAGAA 57.389 29.630 2.61 2.61 43.66 2.52
180 182 8.783093 ACATCATACATTCGTTTCTCAAAAAGA 58.217 29.630 0.00 0.00 32.13 2.52
181 183 8.955061 ACATCATACATTCGTTTCTCAAAAAG 57.045 30.769 0.00 0.00 0.00 2.27
183 185 9.214957 ACTACATCATACATTCGTTTCTCAAAA 57.785 29.630 0.00 0.00 0.00 2.44
184 186 8.655970 CACTACATCATACATTCGTTTCTCAAA 58.344 33.333 0.00 0.00 0.00 2.69
186 188 7.320399 ACACTACATCATACATTCGTTTCTCA 58.680 34.615 0.00 0.00 0.00 3.27
187 189 7.757097 ACACTACATCATACATTCGTTTCTC 57.243 36.000 0.00 0.00 0.00 2.87
190 192 7.031372 ACGTACACTACATCATACATTCGTTT 58.969 34.615 0.00 0.00 0.00 3.60
191 193 6.558009 ACGTACACTACATCATACATTCGTT 58.442 36.000 0.00 0.00 0.00 3.85
192 194 6.127810 ACGTACACTACATCATACATTCGT 57.872 37.500 0.00 0.00 0.00 3.85
194 196 6.976349 TGGAACGTACACTACATCATACATTC 59.024 38.462 0.00 0.00 0.00 2.67
196 198 6.459670 TGGAACGTACACTACATCATACAT 57.540 37.500 0.00 0.00 0.00 2.29
197 199 5.900865 TGGAACGTACACTACATCATACA 57.099 39.130 0.00 0.00 0.00 2.29
198 200 6.327934 ACTTGGAACGTACACTACATCATAC 58.672 40.000 0.00 0.00 0.00 2.39
199 201 6.519679 ACTTGGAACGTACACTACATCATA 57.480 37.500 0.00 0.00 0.00 2.15
200 202 5.401531 ACTTGGAACGTACACTACATCAT 57.598 39.130 0.00 0.00 0.00 2.45
201 203 4.859304 ACTTGGAACGTACACTACATCA 57.141 40.909 0.00 0.00 0.00 3.07
202 204 4.387862 CCAACTTGGAACGTACACTACATC 59.612 45.833 0.92 0.00 40.96 3.06
243 245 0.393077 CTTATACTGCCCCCGTCCAG 59.607 60.000 0.00 0.00 35.26 3.86
244 246 0.031917 TCTTATACTGCCCCCGTCCA 60.032 55.000 0.00 0.00 0.00 4.02
245 247 0.391966 GTCTTATACTGCCCCCGTCC 59.608 60.000 0.00 0.00 0.00 4.79
246 248 0.031721 CGTCTTATACTGCCCCCGTC 59.968 60.000 0.00 0.00 0.00 4.79
248 250 0.462789 AACGTCTTATACTGCCCCCG 59.537 55.000 0.00 0.00 0.00 5.73
251 253 7.184779 GTGAATTAAAACGTCTTATACTGCCC 58.815 38.462 0.00 0.00 0.00 5.36
252 254 7.148373 TGGTGAATTAAAACGTCTTATACTGCC 60.148 37.037 0.00 0.00 0.00 4.85
253 255 7.745015 TGGTGAATTAAAACGTCTTATACTGC 58.255 34.615 0.00 0.00 0.00 4.40
254 256 9.537848 GTTGGTGAATTAAAACGTCTTATACTG 57.462 33.333 0.00 0.00 0.00 2.74
258 260 9.498176 ACTAGTTGGTGAATTAAAACGTCTTAT 57.502 29.630 0.00 0.00 0.00 1.73
260 262 7.797038 ACTAGTTGGTGAATTAAAACGTCTT 57.203 32.000 0.00 0.00 0.00 3.01
261 263 7.797038 AACTAGTTGGTGAATTAAAACGTCT 57.203 32.000 7.48 0.00 0.00 4.18
262 264 8.845942 AAAACTAGTTGGTGAATTAAAACGTC 57.154 30.769 9.34 0.00 0.00 4.34
293 604 1.663702 CGAGGAACGTGGCGTCTTT 60.664 57.895 0.00 0.00 39.99 2.52
322 633 1.328279 GGTTTGGACTTTGGACTGGG 58.672 55.000 0.00 0.00 0.00 4.45
323 634 2.065899 TGGTTTGGACTTTGGACTGG 57.934 50.000 0.00 0.00 0.00 4.00
326 637 3.430236 CCTGTTTGGTTTGGACTTTGGAC 60.430 47.826 0.00 0.00 0.00 4.02
327 638 2.763448 CCTGTTTGGTTTGGACTTTGGA 59.237 45.455 0.00 0.00 0.00 3.53
328 639 3.177997 CCTGTTTGGTTTGGACTTTGG 57.822 47.619 0.00 0.00 0.00 3.28
367 2984 3.587951 TGGTAGGGCTCTATCGAGTCTAT 59.412 47.826 0.00 0.00 41.64 1.98
378 2995 0.988678 GGGTTGGATGGTAGGGCTCT 60.989 60.000 0.00 0.00 0.00 4.09
382 2999 1.696097 CGAGGGGTTGGATGGTAGGG 61.696 65.000 0.00 0.00 0.00 3.53
426 3043 3.717294 GATCAGGTGGTGGCCGGT 61.717 66.667 1.90 0.00 0.00 5.28
429 3046 2.436646 CACGATCAGGTGGTGGCC 60.437 66.667 0.00 0.00 33.39 5.36
517 3156 1.006571 CTCGTTGGTGTACACGGCT 60.007 57.895 19.41 0.00 0.00 5.52
520 3159 0.594602 TCTCCTCGTTGGTGTACACG 59.405 55.000 19.41 8.53 37.07 4.49
568 3207 9.976511 GTACTGATTAACATAGCATAAGTACCA 57.023 33.333 0.00 0.00 0.00 3.25
582 3221 6.697395 TCAAAGCTAGCAGTACTGATTAACA 58.303 36.000 27.08 3.98 0.00 2.41
606 3261 9.993454 GGGGTCGAAGTACTATTTTCTTTATAT 57.007 33.333 0.00 0.00 0.00 0.86
613 3268 2.862536 GCGGGGTCGAAGTACTATTTTC 59.137 50.000 0.00 0.00 39.00 2.29
650 3305 8.886719 TGCTAAATTATGCATAAGCTATAGCAG 58.113 33.333 30.16 18.72 40.71 4.24
651 3306 8.791327 TGCTAAATTATGCATAAGCTATAGCA 57.209 30.769 30.16 30.16 42.74 3.49
652 3307 9.661187 CATGCTAAATTATGCATAAGCTATAGC 57.339 33.333 27.65 27.65 46.65 2.97
655 3310 9.234827 TCACATGCTAAATTATGCATAAGCTAT 57.765 29.630 22.76 13.50 46.65 2.97
656 3311 8.620116 TCACATGCTAAATTATGCATAAGCTA 57.380 30.769 22.76 15.07 46.65 3.32
657 3312 7.514784 TCACATGCTAAATTATGCATAAGCT 57.485 32.000 22.76 14.78 46.65 3.74
658 3313 7.864379 ACTTCACATGCTAAATTATGCATAAGC 59.136 33.333 22.76 19.95 46.65 3.09
659 3314 9.390795 GACTTCACATGCTAAATTATGCATAAG 57.609 33.333 22.76 11.37 46.65 1.73
660 3315 8.901793 TGACTTCACATGCTAAATTATGCATAA 58.098 29.630 20.95 20.95 46.65 1.90
685 3340 1.577328 AATCGTTCCAAGGCGCACTG 61.577 55.000 10.83 5.20 0.00 3.66
712 3367 0.178932 AGGATGCTACAGGCCGGATA 60.179 55.000 10.86 0.00 40.92 2.59
755 6657 1.338973 GGGAAGCATGCATGTACCATG 59.661 52.381 26.79 2.44 42.23 3.66
761 6663 0.745845 GACGAGGGAAGCATGCATGT 60.746 55.000 26.79 9.13 0.00 3.21
762 6664 0.745486 TGACGAGGGAAGCATGCATG 60.745 55.000 22.70 22.70 0.00 4.06
763 6665 0.182061 ATGACGAGGGAAGCATGCAT 59.818 50.000 21.98 8.13 0.00 3.96
764 6666 0.745486 CATGACGAGGGAAGCATGCA 60.745 55.000 21.98 0.00 32.73 3.96
765 6667 0.462581 TCATGACGAGGGAAGCATGC 60.463 55.000 10.51 10.51 38.34 4.06
845 6747 5.065218 GGATGGCCATGCGTTTATATAGAAG 59.935 44.000 26.56 0.00 0.00 2.85
846 6748 4.941263 GGATGGCCATGCGTTTATATAGAA 59.059 41.667 26.56 0.00 0.00 2.10
847 6749 4.513442 GGATGGCCATGCGTTTATATAGA 58.487 43.478 26.56 0.00 0.00 1.98
856 6758 2.440796 CTTGGGATGGCCATGCGT 60.441 61.111 28.45 3.23 35.15 5.24
867 6769 3.181424 TGTGGATGAAATGTTCCTTGGGA 60.181 43.478 0.00 0.00 32.95 4.37
872 6774 2.086869 CGCTGTGGATGAAATGTTCCT 58.913 47.619 0.00 0.00 32.95 3.36
878 6780 2.764314 GGCGCGCTGTGGATGAAAT 61.764 57.895 32.29 0.00 0.00 2.17
889 6791 1.800681 GAATTAACTTGGGCGCGCT 59.199 52.632 32.29 12.78 0.00 5.92
890 6792 1.582680 CGAATTAACTTGGGCGCGC 60.583 57.895 25.94 25.94 0.00 6.86
919 6821 1.132643 CTTGATTCTTGCTGGCTGCTC 59.867 52.381 17.45 6.75 43.37 4.26
970 6893 2.434185 TGGCTAGCCTGCGTTTCG 60.434 61.111 33.07 0.00 36.94 3.46
986 6909 1.468565 CCGCCATCACAATTCAAGCTG 60.469 52.381 0.00 0.00 0.00 4.24
996 6919 1.530419 AAACCTTGCCGCCATCACA 60.530 52.632 0.00 0.00 0.00 3.58
1007 6930 2.355009 GCACGGCAGCAAACCTTG 60.355 61.111 0.00 0.00 0.00 3.61
1111 7034 1.801913 CGTCGCCGAAGAAGACCTG 60.802 63.158 0.00 0.00 35.63 4.00
1228 7151 5.106118 TGAGTAGATTTCTTCTGTGTCTCGG 60.106 44.000 0.00 0.00 35.79 4.63
1235 7158 7.398618 TGGATTCTCTGAGTAGATTTCTTCTGT 59.601 37.037 4.32 0.00 35.79 3.41
1240 7163 5.221224 CGCTGGATTCTCTGAGTAGATTTCT 60.221 44.000 4.32 0.00 31.21 2.52
1260 7183 3.026879 CTACGCATCTCGCCGCTG 61.027 66.667 0.00 0.00 43.23 5.18
1261 7184 4.271816 CCTACGCATCTCGCCGCT 62.272 66.667 0.00 0.00 43.23 5.52
1264 7187 0.931005 CTTTTCCTACGCATCTCGCC 59.069 55.000 0.00 0.00 43.23 5.54
1265 7188 1.922570 TCTTTTCCTACGCATCTCGC 58.077 50.000 0.00 0.00 43.23 5.03
1266 7189 3.250744 TGTTCTTTTCCTACGCATCTCG 58.749 45.455 0.00 0.00 45.38 4.04
1267 7190 5.803020 ATTGTTCTTTTCCTACGCATCTC 57.197 39.130 0.00 0.00 0.00 2.75
1268 7191 7.865706 ATTATTGTTCTTTTCCTACGCATCT 57.134 32.000 0.00 0.00 0.00 2.90
1319 7286 1.280746 GCGGCCACGAATCATGATG 59.719 57.895 9.46 0.00 44.60 3.07
1338 7305 5.937111 TCTAAATACATAAGAGTTGGCCCC 58.063 41.667 0.00 0.00 0.00 5.80
1339 7306 7.939588 AGATTCTAAATACATAAGAGTTGGCCC 59.060 37.037 0.00 0.00 0.00 5.80
1367 7344 9.924010 ATAGAAAGAACACCACTATCTAGTACT 57.076 33.333 0.00 0.00 34.13 2.73
1392 7373 7.584987 CAAAGAATGAACCAGAACTTAACGAT 58.415 34.615 0.00 0.00 0.00 3.73
1661 8583 2.948979 TCCACTGTGGTTTGCAAGTTAG 59.051 45.455 25.15 0.00 39.03 2.34
1676 8598 3.303395 GCTTTGAAAGTCGAGTTCCACTG 60.303 47.826 5.84 0.00 0.00 3.66
1765 8687 2.534019 AAGCGCCACACAAGACACG 61.534 57.895 2.29 0.00 0.00 4.49
1767 8689 2.833533 GCAAGCGCCACACAAGACA 61.834 57.895 2.29 0.00 0.00 3.41
1808 8730 6.554784 AGGCCATAATTTGATCCATACATCA 58.445 36.000 5.01 0.00 0.00 3.07
1809 8731 7.363268 GGAAGGCCATAATTTGATCCATACATC 60.363 40.741 5.01 0.00 0.00 3.06
1824 8746 2.021723 GCCATTGTCGGAAGGCCATAA 61.022 52.381 5.01 0.00 41.25 1.90
1835 8757 1.560004 ATAGCATCGCGCCATTGTCG 61.560 55.000 0.00 0.00 44.04 4.35
1837 8759 1.800586 CTAATAGCATCGCGCCATTGT 59.199 47.619 0.00 0.00 44.04 2.71
1894 8816 2.513753 AGATGGGACGAGATCTGCTAG 58.486 52.381 0.00 0.00 0.00 3.42
1904 8826 1.202842 TCTACGGCATAGATGGGACGA 60.203 52.381 0.00 0.00 34.80 4.20
1937 8859 1.218704 AGGCATAATGCTTGGGTCCAT 59.781 47.619 0.00 0.00 44.28 3.41
1956 8878 2.641321 TGGGATTAGATCATGGCCTCAG 59.359 50.000 3.32 0.00 0.00 3.35
1968 8890 4.297768 TGTCATCATCAGGTGGGATTAGA 58.702 43.478 0.00 0.00 0.00 2.10
1977 8899 4.590647 CCTAGGTACATGTCATCATCAGGT 59.409 45.833 0.00 0.00 34.32 4.00
1978 8900 4.020751 CCCTAGGTACATGTCATCATCAGG 60.021 50.000 8.29 1.30 31.15 3.86
1979 8901 4.590647 ACCCTAGGTACATGTCATCATCAG 59.409 45.833 8.29 0.00 32.11 2.90
1980 8902 4.556697 ACCCTAGGTACATGTCATCATCA 58.443 43.478 8.29 0.00 32.11 3.07
1981 8903 6.456501 GTTACCCTAGGTACATGTCATCATC 58.543 44.000 8.29 0.00 37.97 2.92
1982 8904 5.010719 CGTTACCCTAGGTACATGTCATCAT 59.989 44.000 8.29 0.00 37.97 2.45
1983 8905 4.340097 CGTTACCCTAGGTACATGTCATCA 59.660 45.833 8.29 0.00 37.97 3.07
1984 8906 4.340381 ACGTTACCCTAGGTACATGTCATC 59.660 45.833 8.29 0.00 37.97 2.92
1985 8907 4.284178 ACGTTACCCTAGGTACATGTCAT 58.716 43.478 8.29 0.00 37.97 3.06
1986 8908 3.696051 GACGTTACCCTAGGTACATGTCA 59.304 47.826 8.29 0.00 37.97 3.58
1987 8909 3.696051 TGACGTTACCCTAGGTACATGTC 59.304 47.826 8.29 11.50 37.97 3.06
1988 8910 3.700538 TGACGTTACCCTAGGTACATGT 58.299 45.455 8.29 2.69 37.97 3.21
1989 8911 4.931661 ATGACGTTACCCTAGGTACATG 57.068 45.455 8.29 0.00 37.97 3.21
1990 8912 5.075493 CCTATGACGTTACCCTAGGTACAT 58.925 45.833 8.29 5.18 37.97 2.29
1991 8913 4.464008 CCTATGACGTTACCCTAGGTACA 58.536 47.826 8.29 0.00 37.97 2.90
1992 8914 3.254411 GCCTATGACGTTACCCTAGGTAC 59.746 52.174 8.29 2.01 37.97 3.34
1993 8915 3.490348 GCCTATGACGTTACCCTAGGTA 58.510 50.000 8.29 0.00 37.09 3.08
1994 8916 2.314246 GCCTATGACGTTACCCTAGGT 58.686 52.381 8.29 0.00 40.16 3.08
1995 8917 1.617357 GGCCTATGACGTTACCCTAGG 59.383 57.143 0.06 0.06 33.54 3.02
1996 8918 2.296471 CAGGCCTATGACGTTACCCTAG 59.704 54.545 3.98 0.00 0.00 3.02
1997 8919 2.091720 TCAGGCCTATGACGTTACCCTA 60.092 50.000 3.98 0.00 0.00 3.53
1998 8920 1.120530 CAGGCCTATGACGTTACCCT 58.879 55.000 3.98 0.00 0.00 4.34
1999 8921 1.117150 TCAGGCCTATGACGTTACCC 58.883 55.000 3.98 0.00 0.00 3.69
2000 8922 2.220479 GTCAGGCCTATGACGTTACC 57.780 55.000 3.98 0.00 40.18 2.85
2014 8936 4.051167 TGGGGCATGCAGGTCAGG 62.051 66.667 21.36 0.00 0.00 3.86
2015 8937 2.753043 GTGGGGCATGCAGGTCAG 60.753 66.667 21.36 0.00 0.00 3.51
2016 8938 4.365111 GGTGGGGCATGCAGGTCA 62.365 66.667 21.36 8.63 0.00 4.02
2019 8941 4.700448 TTGGGTGGGGCATGCAGG 62.700 66.667 21.36 0.00 0.00 4.85
2020 8942 3.072468 CTTGGGTGGGGCATGCAG 61.072 66.667 21.36 1.02 0.00 4.41
2021 8943 4.700448 CCTTGGGTGGGGCATGCA 62.700 66.667 21.36 0.00 0.00 3.96
2022 8944 4.380945 TCCTTGGGTGGGGCATGC 62.381 66.667 9.90 9.90 0.00 4.06
2023 8945 2.362889 GTCCTTGGGTGGGGCATG 60.363 66.667 0.00 0.00 0.00 4.06
2024 8946 2.248374 ATGTCCTTGGGTGGGGCAT 61.248 57.895 0.00 0.00 42.87 4.40
2025 8947 1.143329 TAATGTCCTTGGGTGGGGCA 61.143 55.000 0.00 0.00 42.95 5.36
2026 8948 0.683179 GTAATGTCCTTGGGTGGGGC 60.683 60.000 0.00 0.00 0.00 5.80
2027 8949 0.701731 TGTAATGTCCTTGGGTGGGG 59.298 55.000 0.00 0.00 0.00 4.96
2028 8950 1.074727 TGTGTAATGTCCTTGGGTGGG 59.925 52.381 0.00 0.00 0.00 4.61
2029 8951 2.577606 TGTGTAATGTCCTTGGGTGG 57.422 50.000 0.00 0.00 0.00 4.61
2030 8952 4.582656 TCTTTTGTGTAATGTCCTTGGGTG 59.417 41.667 0.00 0.00 0.00 4.61
2031 8953 4.583073 GTCTTTTGTGTAATGTCCTTGGGT 59.417 41.667 0.00 0.00 0.00 4.51
2032 8954 4.022329 GGTCTTTTGTGTAATGTCCTTGGG 60.022 45.833 0.00 0.00 0.00 4.12
2033 8955 4.582656 TGGTCTTTTGTGTAATGTCCTTGG 59.417 41.667 0.00 0.00 0.00 3.61
2034 8956 5.766150 TGGTCTTTTGTGTAATGTCCTTG 57.234 39.130 0.00 0.00 0.00 3.61
2035 8957 6.039382 GTCTTGGTCTTTTGTGTAATGTCCTT 59.961 38.462 0.00 0.00 0.00 3.36
2036 8958 5.531287 GTCTTGGTCTTTTGTGTAATGTCCT 59.469 40.000 0.00 0.00 0.00 3.85
2037 8959 5.278315 GGTCTTGGTCTTTTGTGTAATGTCC 60.278 44.000 0.00 0.00 0.00 4.02
2038 8960 5.278315 GGGTCTTGGTCTTTTGTGTAATGTC 60.278 44.000 0.00 0.00 0.00 3.06
2039 8961 4.583073 GGGTCTTGGTCTTTTGTGTAATGT 59.417 41.667 0.00 0.00 0.00 2.71
2040 8962 4.582656 TGGGTCTTGGTCTTTTGTGTAATG 59.417 41.667 0.00 0.00 0.00 1.90
2041 8963 4.583073 GTGGGTCTTGGTCTTTTGTGTAAT 59.417 41.667 0.00 0.00 0.00 1.89
2042 8964 3.949113 GTGGGTCTTGGTCTTTTGTGTAA 59.051 43.478 0.00 0.00 0.00 2.41
2043 8965 3.054287 TGTGGGTCTTGGTCTTTTGTGTA 60.054 43.478 0.00 0.00 0.00 2.90
2044 8966 2.291282 TGTGGGTCTTGGTCTTTTGTGT 60.291 45.455 0.00 0.00 0.00 3.72
2045 8967 2.374184 TGTGGGTCTTGGTCTTTTGTG 58.626 47.619 0.00 0.00 0.00 3.33
2046 8968 2.818751 TGTGGGTCTTGGTCTTTTGT 57.181 45.000 0.00 0.00 0.00 2.83
2047 8969 3.447229 ACTTTGTGGGTCTTGGTCTTTTG 59.553 43.478 0.00 0.00 0.00 2.44
2048 8970 3.708451 ACTTTGTGGGTCTTGGTCTTTT 58.292 40.909 0.00 0.00 0.00 2.27
2049 8971 3.382083 ACTTTGTGGGTCTTGGTCTTT 57.618 42.857 0.00 0.00 0.00 2.52
2050 8972 3.382083 AACTTTGTGGGTCTTGGTCTT 57.618 42.857 0.00 0.00 0.00 3.01
2051 8973 4.513406 TTAACTTTGTGGGTCTTGGTCT 57.487 40.909 0.00 0.00 0.00 3.85
2052 8974 4.399934 TGTTTAACTTTGTGGGTCTTGGTC 59.600 41.667 0.00 0.00 0.00 4.02
2053 8975 4.345854 TGTTTAACTTTGTGGGTCTTGGT 58.654 39.130 0.00 0.00 0.00 3.67
2054 8976 4.642885 TCTGTTTAACTTTGTGGGTCTTGG 59.357 41.667 0.00 0.00 0.00 3.61
2055 8977 5.828299 TCTGTTTAACTTTGTGGGTCTTG 57.172 39.130 0.00 0.00 0.00 3.02
2056 8978 6.184789 TCTTCTGTTTAACTTTGTGGGTCTT 58.815 36.000 0.00 0.00 0.00 3.01
2057 8979 5.751586 TCTTCTGTTTAACTTTGTGGGTCT 58.248 37.500 0.00 0.00 0.00 3.85
2058 8980 6.635030 ATCTTCTGTTTAACTTTGTGGGTC 57.365 37.500 0.00 0.00 0.00 4.46
2059 8981 6.489022 GGTATCTTCTGTTTAACTTTGTGGGT 59.511 38.462 0.00 0.00 0.00 4.51
2060 8982 6.348213 CGGTATCTTCTGTTTAACTTTGTGGG 60.348 42.308 0.00 0.00 0.00 4.61
2061 8983 6.425721 TCGGTATCTTCTGTTTAACTTTGTGG 59.574 38.462 0.00 0.00 0.00 4.17
2062 8984 7.170998 AGTCGGTATCTTCTGTTTAACTTTGTG 59.829 37.037 0.00 0.00 0.00 3.33
2063 8985 7.170998 CAGTCGGTATCTTCTGTTTAACTTTGT 59.829 37.037 0.00 0.00 0.00 2.83
2064 8986 7.384115 TCAGTCGGTATCTTCTGTTTAACTTTG 59.616 37.037 0.00 0.00 0.00 2.77
2065 8987 7.439381 TCAGTCGGTATCTTCTGTTTAACTTT 58.561 34.615 0.00 0.00 0.00 2.66
2066 8988 6.989659 TCAGTCGGTATCTTCTGTTTAACTT 58.010 36.000 0.00 0.00 0.00 2.66
2067 8989 6.585695 TCAGTCGGTATCTTCTGTTTAACT 57.414 37.500 0.00 0.00 0.00 2.24
2068 8990 7.647907 TTTCAGTCGGTATCTTCTGTTTAAC 57.352 36.000 0.00 0.00 0.00 2.01
2069 8991 7.548075 GGATTTCAGTCGGTATCTTCTGTTTAA 59.452 37.037 0.00 0.00 0.00 1.52
2070 8992 7.039882 GGATTTCAGTCGGTATCTTCTGTTTA 58.960 38.462 0.00 0.00 0.00 2.01
2071 8993 5.875359 GGATTTCAGTCGGTATCTTCTGTTT 59.125 40.000 0.00 0.00 0.00 2.83
2072 8994 5.187967 AGGATTTCAGTCGGTATCTTCTGTT 59.812 40.000 0.00 0.00 0.00 3.16
2073 8995 4.712337 AGGATTTCAGTCGGTATCTTCTGT 59.288 41.667 0.00 0.00 0.00 3.41
2074 8996 5.163509 TGAGGATTTCAGTCGGTATCTTCTG 60.164 44.000 0.00 0.00 0.00 3.02
2075 8997 4.956700 TGAGGATTTCAGTCGGTATCTTCT 59.043 41.667 0.00 0.00 0.00 2.85
2076 8998 5.263968 TGAGGATTTCAGTCGGTATCTTC 57.736 43.478 0.00 0.00 0.00 2.87
2077 8999 5.363868 TCATGAGGATTTCAGTCGGTATCTT 59.636 40.000 0.00 0.00 39.68 2.40
2078 9000 4.895889 TCATGAGGATTTCAGTCGGTATCT 59.104 41.667 0.00 0.00 39.68 1.98
2079 9001 5.201713 TCATGAGGATTTCAGTCGGTATC 57.798 43.478 0.00 0.00 39.68 2.24
2080 9002 5.129485 ACTTCATGAGGATTTCAGTCGGTAT 59.871 40.000 12.40 0.00 39.68 2.73
2081 9003 4.466370 ACTTCATGAGGATTTCAGTCGGTA 59.534 41.667 12.40 0.00 39.68 4.02
2082 9004 3.261897 ACTTCATGAGGATTTCAGTCGGT 59.738 43.478 12.40 0.00 39.68 4.69
2083 9005 3.620374 CACTTCATGAGGATTTCAGTCGG 59.380 47.826 12.40 0.00 39.68 4.79
2084 9006 3.063180 GCACTTCATGAGGATTTCAGTCG 59.937 47.826 12.40 0.30 39.68 4.18
2085 9007 4.005650 TGCACTTCATGAGGATTTCAGTC 58.994 43.478 12.40 0.00 39.68 3.51
2086 9008 4.025040 TGCACTTCATGAGGATTTCAGT 57.975 40.909 12.40 0.00 39.68 3.41
2087 9009 5.578005 ATTGCACTTCATGAGGATTTCAG 57.422 39.130 12.40 0.00 39.68 3.02
2088 9010 5.945191 TGTATTGCACTTCATGAGGATTTCA 59.055 36.000 12.40 1.00 40.85 2.69
2089 9011 6.261118 GTGTATTGCACTTCATGAGGATTTC 58.739 40.000 12.40 0.00 44.41 2.17
2090 9012 6.199937 GTGTATTGCACTTCATGAGGATTT 57.800 37.500 12.40 0.00 44.41 2.17
2091 9013 5.824904 GTGTATTGCACTTCATGAGGATT 57.175 39.130 12.40 0.00 44.41 3.01
2101 9023 9.819793 ACATCTTCTGTCGAGTGTATTGCACTT 62.820 40.741 8.86 0.00 46.34 3.16
2103 9025 6.357896 ACATCTTCTGTCGAGTGTATTGCAC 61.358 44.000 0.00 0.00 40.30 4.57
2104 9026 3.934457 TCTTCTGTCGAGTGTATTGCA 57.066 42.857 0.00 0.00 0.00 4.08
2105 9027 4.177026 ACATCTTCTGTCGAGTGTATTGC 58.823 43.478 0.00 0.00 29.94 3.56
2106 9028 5.940603 GACATCTTCTGTCGAGTGTATTG 57.059 43.478 0.00 0.00 44.58 1.90
2116 9038 8.447178 GGGATATCCGAGTGACATCTTCTGTC 62.447 50.000 15.69 0.00 44.98 3.51
2117 9039 4.279671 GGATATCCGAGTGACATCTTCTGT 59.720 45.833 5.86 0.00 42.15 3.41
2118 9040 4.321601 GGGATATCCGAGTGACATCTTCTG 60.322 50.000 15.69 0.00 36.71 3.02
2119 9041 3.829601 GGGATATCCGAGTGACATCTTCT 59.170 47.826 15.69 0.00 36.71 2.85
2120 9042 3.574396 TGGGATATCCGAGTGACATCTTC 59.426 47.826 15.69 0.00 38.76 2.87
2121 9043 3.576861 TGGGATATCCGAGTGACATCTT 58.423 45.455 15.69 0.00 38.76 2.40
2122 9044 3.244887 TGGGATATCCGAGTGACATCT 57.755 47.619 15.69 0.00 38.76 2.90
2123 9045 4.543590 ATTGGGATATCCGAGTGACATC 57.456 45.455 15.69 0.00 38.76 3.06
2124 9046 4.263068 GGAATTGGGATATCCGAGTGACAT 60.263 45.833 15.69 0.00 38.76 3.06
2125 9047 3.071023 GGAATTGGGATATCCGAGTGACA 59.929 47.826 15.69 3.93 38.76 3.58
2126 9048 3.071023 TGGAATTGGGATATCCGAGTGAC 59.929 47.826 15.69 6.17 38.76 3.67
2127 9049 3.071023 GTGGAATTGGGATATCCGAGTGA 59.929 47.826 15.69 0.00 38.76 3.41
2128 9050 3.071602 AGTGGAATTGGGATATCCGAGTG 59.928 47.826 15.69 0.00 38.76 3.51
2129 9051 3.318313 AGTGGAATTGGGATATCCGAGT 58.682 45.455 15.69 5.78 38.76 4.18
2130 9052 3.615110 CGAGTGGAATTGGGATATCCGAG 60.615 52.174 15.69 0.00 38.76 4.63
2131 9053 2.299013 CGAGTGGAATTGGGATATCCGA 59.701 50.000 15.69 9.20 38.76 4.55
2132 9054 2.299013 TCGAGTGGAATTGGGATATCCG 59.701 50.000 15.69 0.00 38.76 4.18
2133 9055 3.557264 GGTCGAGTGGAATTGGGATATCC 60.557 52.174 13.87 13.87 0.00 2.59
2134 9056 3.665190 GGTCGAGTGGAATTGGGATATC 58.335 50.000 0.00 0.00 0.00 1.63
2135 9057 2.037251 CGGTCGAGTGGAATTGGGATAT 59.963 50.000 0.00 0.00 0.00 1.63
2136 9058 1.411246 CGGTCGAGTGGAATTGGGATA 59.589 52.381 0.00 0.00 0.00 2.59
2137 9059 0.178068 CGGTCGAGTGGAATTGGGAT 59.822 55.000 0.00 0.00 0.00 3.85
2138 9060 1.189524 ACGGTCGAGTGGAATTGGGA 61.190 55.000 0.00 0.00 0.00 4.37
2139 9061 0.739813 GACGGTCGAGTGGAATTGGG 60.740 60.000 0.00 0.00 0.00 4.12
2140 9062 0.037697 TGACGGTCGAGTGGAATTGG 60.038 55.000 3.34 0.00 0.00 3.16
2141 9063 2.010145 ATGACGGTCGAGTGGAATTG 57.990 50.000 3.34 0.00 0.00 2.32
2142 9064 2.762535 AATGACGGTCGAGTGGAATT 57.237 45.000 3.34 0.00 0.00 2.17
2143 9065 4.142026 TGAATAATGACGGTCGAGTGGAAT 60.142 41.667 3.34 0.00 0.00 3.01
2144 9066 3.193903 TGAATAATGACGGTCGAGTGGAA 59.806 43.478 3.34 0.00 0.00 3.53
2145 9067 2.756207 TGAATAATGACGGTCGAGTGGA 59.244 45.455 3.34 0.00 0.00 4.02
2146 9068 2.858344 GTGAATAATGACGGTCGAGTGG 59.142 50.000 3.34 0.00 0.00 4.00
2147 9069 3.770666 AGTGAATAATGACGGTCGAGTG 58.229 45.455 3.34 0.00 0.00 3.51
2148 9070 3.487042 CGAGTGAATAATGACGGTCGAGT 60.487 47.826 3.34 0.00 0.00 4.18
2149 9071 3.036633 CGAGTGAATAATGACGGTCGAG 58.963 50.000 3.34 0.00 0.00 4.04
2150 9072 2.223409 CCGAGTGAATAATGACGGTCGA 60.223 50.000 3.34 0.00 36.38 4.20
2151 9073 2.117137 CCGAGTGAATAATGACGGTCG 58.883 52.381 3.34 0.00 36.38 4.79
2152 9074 3.431922 TCCGAGTGAATAATGACGGTC 57.568 47.619 0.00 0.00 40.93 4.79
2153 9075 3.446161 TCTTCCGAGTGAATAATGACGGT 59.554 43.478 0.00 0.00 40.93 4.83
2154 9076 3.797256 GTCTTCCGAGTGAATAATGACGG 59.203 47.826 0.00 0.00 41.39 4.79
2155 9077 4.421058 TGTCTTCCGAGTGAATAATGACG 58.579 43.478 0.00 0.00 30.79 4.35
2156 9078 6.100004 TCTTGTCTTCCGAGTGAATAATGAC 58.900 40.000 0.00 0.00 31.06 3.06
2157 9079 6.280855 TCTTGTCTTCCGAGTGAATAATGA 57.719 37.500 0.00 0.00 31.06 2.57
2158 9080 6.968131 TTCTTGTCTTCCGAGTGAATAATG 57.032 37.500 0.00 0.00 31.06 1.90
2159 9081 6.763610 GGATTCTTGTCTTCCGAGTGAATAAT 59.236 38.462 0.00 0.00 31.06 1.28
2160 9082 6.106673 GGATTCTTGTCTTCCGAGTGAATAA 58.893 40.000 0.00 0.00 31.06 1.40
2161 9083 5.186992 TGGATTCTTGTCTTCCGAGTGAATA 59.813 40.000 0.00 0.00 31.06 1.75
2162 9084 4.020218 TGGATTCTTGTCTTCCGAGTGAAT 60.020 41.667 0.00 0.00 31.06 2.57
2163 9085 3.323691 TGGATTCTTGTCTTCCGAGTGAA 59.676 43.478 0.00 0.00 31.90 3.18
2164 9086 2.897326 TGGATTCTTGTCTTCCGAGTGA 59.103 45.455 0.00 0.00 31.90 3.41
2165 9087 2.996621 GTGGATTCTTGTCTTCCGAGTG 59.003 50.000 0.00 0.00 31.90 3.51
2166 9088 2.900546 AGTGGATTCTTGTCTTCCGAGT 59.099 45.455 0.00 0.00 31.90 4.18
2167 9089 3.516615 GAGTGGATTCTTGTCTTCCGAG 58.483 50.000 0.00 0.00 31.90 4.63
2168 9090 2.094700 CGAGTGGATTCTTGTCTTCCGA 60.095 50.000 0.00 0.00 31.90 4.55
2169 9091 2.263077 CGAGTGGATTCTTGTCTTCCG 58.737 52.381 0.00 0.00 31.90 4.30
2170 9092 2.233922 TCCGAGTGGATTCTTGTCTTCC 59.766 50.000 0.00 0.00 40.17 3.46
2171 9093 3.056465 ACTCCGAGTGGATTCTTGTCTTC 60.056 47.826 0.00 0.00 45.33 2.87
2172 9094 2.900546 ACTCCGAGTGGATTCTTGTCTT 59.099 45.455 0.00 0.00 45.33 3.01
2173 9095 2.530701 ACTCCGAGTGGATTCTTGTCT 58.469 47.619 0.00 0.00 45.33 3.41
2174 9096 3.192844 TGTACTCCGAGTGGATTCTTGTC 59.807 47.826 11.52 0.00 45.33 3.18
2175 9097 3.056749 GTGTACTCCGAGTGGATTCTTGT 60.057 47.826 11.52 0.00 45.33 3.16
2176 9098 3.056821 TGTGTACTCCGAGTGGATTCTTG 60.057 47.826 11.52 0.00 45.33 3.02
2177 9099 3.162666 TGTGTACTCCGAGTGGATTCTT 58.837 45.455 11.52 0.00 45.33 2.52
2178 9100 2.803956 TGTGTACTCCGAGTGGATTCT 58.196 47.619 11.52 0.00 45.33 2.40
2179 9101 3.192844 TCTTGTGTACTCCGAGTGGATTC 59.807 47.826 11.52 0.00 45.33 2.52
2180 9102 3.056749 GTCTTGTGTACTCCGAGTGGATT 60.057 47.826 11.52 0.00 45.33 3.01
2181 9103 2.492484 GTCTTGTGTACTCCGAGTGGAT 59.508 50.000 11.52 0.00 45.33 3.41
2182 9104 1.884579 GTCTTGTGTACTCCGAGTGGA 59.115 52.381 11.52 0.00 43.88 4.02
2183 9105 1.067776 GGTCTTGTGTACTCCGAGTGG 60.068 57.143 11.52 0.00 0.00 4.00
2184 9106 1.887198 AGGTCTTGTGTACTCCGAGTG 59.113 52.381 11.52 0.00 0.00 3.51
2185 9107 2.289592 AGGTCTTGTGTACTCCGAGT 57.710 50.000 6.25 6.25 0.00 4.18
2186 9108 3.607741 TCTAGGTCTTGTGTACTCCGAG 58.392 50.000 0.00 0.00 0.00 4.63
2187 9109 3.008813 ACTCTAGGTCTTGTGTACTCCGA 59.991 47.826 0.00 0.00 0.00 4.55
2188 9110 3.345414 ACTCTAGGTCTTGTGTACTCCG 58.655 50.000 0.00 0.00 0.00 4.63
2189 9111 4.156373 GTGACTCTAGGTCTTGTGTACTCC 59.844 50.000 11.21 0.00 44.74 3.85
2190 9112 4.156373 GGTGACTCTAGGTCTTGTGTACTC 59.844 50.000 11.21 0.00 44.74 2.59
2191 9113 4.080687 GGTGACTCTAGGTCTTGTGTACT 58.919 47.826 11.21 0.00 44.74 2.73
2192 9114 3.193056 GGGTGACTCTAGGTCTTGTGTAC 59.807 52.174 11.21 0.00 44.74 2.90
2193 9115 3.428532 GGGTGACTCTAGGTCTTGTGTA 58.571 50.000 11.21 0.00 44.74 2.90
2194 9116 2.249139 GGGTGACTCTAGGTCTTGTGT 58.751 52.381 11.21 0.00 44.74 3.72
2195 9117 1.550976 GGGGTGACTCTAGGTCTTGTG 59.449 57.143 11.21 0.00 44.74 3.33
2196 9118 1.433592 AGGGGTGACTCTAGGTCTTGT 59.566 52.381 11.21 0.00 41.82 3.16
2197 9119 1.827969 CAGGGGTGACTCTAGGTCTTG 59.172 57.143 11.21 1.95 41.55 3.02
2198 9120 1.717077 TCAGGGGTGACTCTAGGTCTT 59.283 52.381 11.21 0.00 41.55 3.01
2199 9121 1.383963 TCAGGGGTGACTCTAGGTCT 58.616 55.000 11.21 0.00 41.55 3.85
2200 9122 2.233305 TTCAGGGGTGACTCTAGGTC 57.767 55.000 4.84 4.84 41.55 3.85
2201 9123 2.472029 CATTCAGGGGTGACTCTAGGT 58.528 52.381 0.00 0.00 41.55 3.08
2202 9124 1.765314 CCATTCAGGGGTGACTCTAGG 59.235 57.143 0.00 0.00 41.55 3.02
2203 9125 1.139853 GCCATTCAGGGGTGACTCTAG 59.860 57.143 0.00 0.00 41.55 2.43
2204 9126 1.204146 GCCATTCAGGGGTGACTCTA 58.796 55.000 0.00 0.00 41.55 2.43
2206 9128 0.038166 TTGCCATTCAGGGGTGACTC 59.962 55.000 0.00 0.00 38.09 3.36
2207 9129 0.251341 GTTGCCATTCAGGGGTGACT 60.251 55.000 0.00 0.00 38.09 3.41
2208 9130 1.586154 CGTTGCCATTCAGGGGTGAC 61.586 60.000 0.00 0.00 38.09 3.67
2209 9131 1.303236 CGTTGCCATTCAGGGGTGA 60.303 57.895 0.00 0.00 38.09 4.02
2210 9132 3.277133 CGTTGCCATTCAGGGGTG 58.723 61.111 0.00 0.00 38.09 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.