AutoCloner

Multiple sequence alignment - TraesCS7D01G201300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G201300	chr7D	100.000	2519	0	0	1	2519	160486701	160489219	0.000000e+00	4652.0
1	TraesCS7D01G201300	chr7D	88.438	1159	94	20	544	1683	160533702	160534839	0.000000e+00	1362.0
2	TraesCS7D01G201300	chr7D	87.619	210	23	2	2311	2519	160537352	160537559	9.000000e-60	241.0
3	TraesCS7D01G201300	chr7D	82.456	171	15	6	2154	2315	160536507	160536671	4.370000e-28	135.0
4	TraesCS7D01G201300	chr7B	90.941	1689	102	21	11	1678	121052535	121054193	0.000000e+00	2224.0
5	TraesCS7D01G201300	chr7B	86.559	1555	120	40	168	1684	121241726	121243229	0.000000e+00	1631.0
6	TraesCS7D01G201300	chr7B	86.109	1555	128	37	168	1684	121319969	121321473	0.000000e+00	1594.0
7	TraesCS7D01G201300	chr7B	87.977	1231	109	24	544	1757	121495581	121496789	0.000000e+00	1417.0
8	TraesCS7D01G201300	chr7B	91.484	822	46	12	876	1684	121115422	121116232	0.000000e+00	1109.0
9	TraesCS7D01G201300	chr7B	91.484	822	46	12	876	1684	121166748	121167558	0.000000e+00	1109.0
10	TraesCS7D01G201300	chr7B	90.767	769	49	11	11	776	121113161	121113910	0.000000e+00	1007.0
11	TraesCS7D01G201300	chr7B	90.377	769	52	11	11	776	121164517	121165266	0.000000e+00	990.0
12	TraesCS7D01G201300	chr7B	88.514	592	53	12	1928	2516	121054658	121055237	0.000000e+00	702.0
13	TraesCS7D01G201300	chr7B	89.890	544	45	8	1928	2469	121387474	121388009	0.000000e+00	691.0
14	TraesCS7D01G201300	chr7B	90.341	528	43	7	1944	2469	121321920	121322441	0.000000e+00	686.0
15	TraesCS7D01G201300	chr7B	88.561	542	54	7	1930	2469	121243748	121244283	0.000000e+00	651.0
16	TraesCS7D01G201300	chr7B	90.968	465	30	5	1229	1684	121386488	121386949	1.280000e-172	616.0
17	TraesCS7D01G201300	chr7B	87.296	551	48	9	1921	2469	121116449	121116979	5.960000e-171	610.0
18	TraesCS7D01G201300	chr7B	87.296	551	48	9	1921	2469	121167776	121168306	5.960000e-171	610.0
19	TraesCS7D01G201300	chr7B	79.580	524	68	18	168	675	121385623	121386123	3.100000e-89	339.0
20	TraesCS7D01G201300	chr7B	80.180	333	51	10	230	557	121494455	121494777	4.190000e-58	235.0
21	TraesCS7D01G201300	chr7B	89.344	122	4	2	1671	1792	121054218	121054330	7.260000e-31	145.0
22	TraesCS7D01G201300	chr7B	89.344	122	4	2	1671	1792	121116251	121116363	7.260000e-31	145.0
23	TraesCS7D01G201300	chr7B	89.344	122	4	2	1671	1792	121167578	121167690	7.260000e-31	145.0
24	TraesCS7D01G201300	chr7B	89.344	122	4	2	1671	1792	121321493	121321605	7.260000e-31	145.0
25	TraesCS7D01G201300	chr7B	89.344	122	4	2	1671	1792	121386968	121387080	7.260000e-31	145.0
26	TraesCS7D01G201300	chr7B	85.366	123	8	6	1671	1792	121243251	121243364	4.400000e-23	119.0
27	TraesCS7D01G201300	chr7B	79.882	169	20	3	2154	2315	121499305	121499466	7.370000e-21	111.0
28	TraesCS7D01G201300	chr7B	91.304	46	4	0	1813	1858	121243355	121243400	2.090000e-06	63.9
29	TraesCS7D01G201300	chr7B	97.297	37	1	0	1822	1858	121321605	121321641	2.090000e-06	63.9
30	TraesCS7D01G201300	chr7B	100.000	28	0	0	1822	1849	121054330	121054357	5.000000e-03	52.8
31	TraesCS7D01G201300	chr7A	92.761	1340	72	14	339	1665	161279223	161280550	0.000000e+00	1914.0
32	TraesCS7D01G201300	chr7A	87.490	1239	106	28	549	1757	161650175	161651394	0.000000e+00	1384.0
33	TraesCS7D01G201300	chr7A	89.219	269	24	2	2251	2519	161296446	161296709	5.190000e-87	331.0
34	TraesCS7D01G201300	chr7A	88.587	184	19	2	2328	2511	161672443	161672624	3.260000e-54	222.0
35	TraesCS7D01G201300	chr7A	79.861	144	23	3	418	557	161649771	161649912	1.590000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G201300	chr7D	160486701	160489219	2518	False	4652.000000	4652	100.000000	1	2519	1	chr7D.!!$F1	2518
1	TraesCS7D01G201300	chr7D	160533702	160537559	3857	False	579.333333	1362	86.171000	544	2519	3	chr7D.!!$F2	1975
2	TraesCS7D01G201300	chr7B	121052535	121055237	2702	False	780.950000	2224	92.199750	11	2516	4	chr7B.!!$F1	2505
3	TraesCS7D01G201300	chr7B	121113161	121116979	3818	False	717.750000	1109	89.722750	11	2469	4	chr7B.!!$F2	2458
4	TraesCS7D01G201300	chr7B	121164517	121168306	3789	False	713.500000	1109	89.625250	11	2469	4	chr7B.!!$F3	2458
5	TraesCS7D01G201300	chr7B	121319969	121322441	2472	False	622.225000	1594	90.772750	168	2469	4	chr7B.!!$F5	2301
6	TraesCS7D01G201300	chr7B	121241726	121244283	2557	False	616.225000	1631	87.947500	168	2469	4	chr7B.!!$F4	2301
7	TraesCS7D01G201300	chr7B	121494455	121499466	5011	False	587.666667	1417	82.679667	230	2315	3	chr7B.!!$F7	2085
8	TraesCS7D01G201300	chr7B	121385623	121388009	2386	False	447.750000	691	87.445500	168	2469	4	chr7B.!!$F6	2301
9	TraesCS7D01G201300	chr7A	161279223	161280550	1327	False	1914.000000	1914	92.761000	339	1665	1	chr7A.!!$F1	1326
10	TraesCS7D01G201300	chr7A	161649771	161651394	1623	False	742.000000	1384	83.675500	418	1757	2	chr7A.!!$F4	1339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
864	1914	0.251121	TTTCCCCGCATCTTCTTGCA	60.251	50.0	0.0	0.0	42.91	4.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2276	7039	1.419387	AGCCTAGATGCACTCCAATCC	59.581	52.381	0.0	0.0	0.0	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
132	133	0.534203	AGCCGATGACAACAACCGTT	60.534	50.000	0.00	0.00	35.01	4.44
191	194	2.504026	GCGTCTGTCGTCATCGCA	60.504	61.111	19.96	0.00	41.93	5.10
226	229	1.946768	GCCGCAAGTCATGGCTATTTA	59.053	47.619	0.00	0.00	45.40	1.40
260	263	5.899547	AGATGATTATGTGGTAGTGTCTCCA	59.100	40.000	0.00	0.00	0.00	3.86
267	270	5.241403	TGTGGTAGTGTCTCCATGAAATT	57.759	39.130	0.00	0.00	36.09	1.82
268	271	5.630121	TGTGGTAGTGTCTCCATGAAATTT	58.370	37.500	0.00	0.00	36.09	1.82
303	308	1.063031	GCTACGGTTCCGTACAACAC	58.937	55.000	18.34	4.53	42.88	3.32
371	376	7.604927	TGCGATGTCTAGTGGTTTTACTATTTT	59.395	33.333	0.00	0.00	33.04	1.82
735	1760	0.300491	CAATGTACGTCGGGATTGCG	59.700	55.000	0.00	0.00	0.00	4.85
770	1808	5.977129	TGTTGTCAGATGTATGCGTATGTAG	59.023	40.000	0.00	0.00	0.00	2.74
782	1820	9.332502	TGTATGCGTATGTAGTGGAAATAAAAT	57.667	29.630	0.00	0.00	0.00	1.82
864	1914	0.251121	TTTCCCCGCATCTTCTTGCA	60.251	50.000	0.00	0.00	42.91	4.08
928	3385	5.211973	AGATAGCCATAGACTCTTTCCACA	58.788	41.667	0.00	0.00	0.00	4.17
930	3387	4.414337	AGCCATAGACTCTTTCCACATC	57.586	45.455	0.00	0.00	0.00	3.06
931	3388	3.135530	AGCCATAGACTCTTTCCACATCC	59.864	47.826	0.00	0.00	0.00	3.51
997	3464	2.147958	CTCGAGCCACCTACTAGCTAG	58.852	57.143	19.44	19.44	36.87	3.42
1008	3475	3.194542	CCTACTAGCTAGTCATGGCATCC	59.805	52.174	29.28	0.00	37.73	3.51
1020	3487	1.823041	GGCATCCTCCAAGAGCAGC	60.823	63.158	0.00	0.00	0.00	5.25
1040	3507	0.311790	CTTGCAATGTTCGCACTGGT	59.688	50.000	0.00	0.00	39.59	4.00
1254	3722	0.462759	GCGAGAACATCTTCTGGGGG	60.463	60.000	0.00	0.00	36.82	5.40
1461	3929	1.136828	TCACCTGCAACTACAACCCT	58.863	50.000	0.00	0.00	0.00	4.34
1522	3996	0.108992	CGCCGAAGCCAAGTAGTACA	60.109	55.000	2.52	0.00	34.57	2.90
1529	4003	3.160777	AGCCAAGTAGTACATACGTGC	57.839	47.619	0.00	1.81	41.08	5.34
1531	4005	2.733227	GCCAAGTAGTACATACGTGCGT	60.733	50.000	0.00	2.05	41.08	5.24
1537	4011	1.001048	AGTACATACGTGCGTGTGTGT	60.001	47.619	28.23	20.42	46.94	3.72
1539	4013	1.292061	ACATACGTGCGTGTGTGTTT	58.708	45.000	22.34	2.11	46.09	2.83
1540	4014	1.666700	ACATACGTGCGTGTGTGTTTT	59.333	42.857	22.34	1.78	46.09	2.43
1568	4044	1.136446	GGTGACGTGCGTGTGTTTATC	60.136	52.381	0.67	0.00	0.00	1.75
1684	4176	3.991773	TCTGTGGAGCGTGTAAATGTAAC	59.008	43.478	0.00	0.00	0.00	2.50
1697	4229	9.362539	CGTGTAAATGTAACCATATATACCTCC	57.637	37.037	0.00	0.00	0.00	4.30
1738	4270	8.477984	TCCTTTTGTTTTCTTGTTCAAATCTG	57.522	30.769	0.00	0.00	31.45	2.90
1742	4274	6.147864	TGTTTTCTTGTTCAAATCTGGGAG	57.852	37.500	0.00	0.00	0.00	4.30
1862	4906	8.909423	TGAATTTGTTTTTAAGGATATCCCCT	57.091	30.769	18.56	8.59	38.42	4.79
1863	4907	9.998752	TGAATTTGTTTTTAAGGATATCCCCTA	57.001	29.630	18.56	7.56	34.95	3.53
1865	4909	9.777008	AATTTGTTTTTAAGGATATCCCCTACA	57.223	29.630	18.56	10.99	34.95	2.74
1869	6124	9.060137	TGTTTTTAAGGATATCCCCTACAGTAA	57.940	33.333	18.56	3.51	34.95	2.24
1879	6134	2.963782	CCCCTACAGTAAGCGATAAGGT	59.036	50.000	0.00	0.00	0.00	3.50
1880	6135	3.387050	CCCCTACAGTAAGCGATAAGGTT	59.613	47.826	0.00	0.00	43.76	3.50
1913	6168	9.553064	GATTCTGAGAATAAGAAAAGCATAGGA	57.447	33.333	7.82	0.00	0.00	2.94
1915	6170	9.739276	TTCTGAGAATAAGAAAAGCATAGGAAA	57.261	29.630	0.00	0.00	0.00	3.13
1946	6201	7.870445	TGTTTTCAAAGATAATAAACCCAGTGC	59.130	33.333	0.00	0.00	0.00	4.40
1962	6217	7.156694	ACCCAGTGCACCCTTATATTTATTA	57.843	36.000	14.63	0.00	0.00	0.98
1963	6218	7.588169	ACCCAGTGCACCCTTATATTTATTAA	58.412	34.615	14.63	0.00	0.00	1.40
1964	6219	7.724061	ACCCAGTGCACCCTTATATTTATTAAG	59.276	37.037	14.63	0.00	0.00	1.85
1990	6259	9.072294	GTAAGATTGGGTTTGATTACGAAAATG	57.928	33.333	0.00	0.00	0.00	2.32
1992	6261	7.312899	AGATTGGGTTTGATTACGAAAATGTC	58.687	34.615	0.00	0.00	0.00	3.06
2081	6835	1.369625	CACCATTACGCCAAGACCTC	58.630	55.000	0.00	0.00	0.00	3.85
2093	6847	1.879380	CAAGACCTCGCCAATGAAACA	59.121	47.619	0.00	0.00	0.00	2.83
2103	6857	3.490526	CGCCAATGAAACAAACAGAAAGG	59.509	43.478	0.00	0.00	0.00	3.11
2202	6956	1.767759	ATAATGGGCTGGTGTGCTTC	58.232	50.000	0.00	0.00	0.00	3.86
2276	7039	3.567164	GCAGACATTAAGATCCACATGGG	59.433	47.826	0.00	0.00	35.41	4.00
2286	7049	0.625316	TCCACATGGGGATTGGAGTG	59.375	55.000	14.36	0.00	34.35	3.51
2299	7062	1.266867	TGGAGTGCATCTAGGCTGCA	61.267	55.000	14.49	14.49	46.82	4.41
2315	7078	2.741228	GCTGCATAGTGTTCCCTCTCAG	60.741	54.545	0.00	0.00	0.00	3.35
2391	7840	2.094390	GGTGCAGAACGTGGTCTGTATA	60.094	50.000	15.78	1.39	45.75	1.47
2394	7843	4.630069	GTGCAGAACGTGGTCTGTATATTT	59.370	41.667	15.78	0.00	45.75	1.40
2395	7844	5.121768	GTGCAGAACGTGGTCTGTATATTTT	59.878	40.000	15.78	0.00	45.75	1.82
2476	7928	8.592105	TTAAATGCTCTTTGAATTTTCCACAG	57.408	30.769	0.00	0.00	35.59	3.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
93	94	1.188219	TGTCGAGCTCCTTTGCCTCT	61.188	55.000	8.47	0.00	0.00	3.69
138	140	1.941812	CAAACGTGGTGGCTGAGAC	59.058	57.895	0.00	0.00	0.00	3.36
161	163	3.741476	GACGCAGCCCTGGCAAAG	61.741	66.667	11.38	3.23	44.88	2.77
172	174	2.500442	GCGATGACGACAGACGCAG	61.500	63.158	25.89	4.34	46.16	5.18
226	229	6.182627	ACCACATAATCATCTGTTGTCATGT	58.817	36.000	0.00	0.00	0.00	3.21
232	235	7.044181	AGACACTACCACATAATCATCTGTTG	58.956	38.462	0.00	0.00	0.00	3.33
340	345	2.621338	ACCACTAGACATCGCACATTG	58.379	47.619	0.00	0.00	0.00	2.82
458	478	9.257651	CATAGATCGCATGTGTATTGATGATAT	57.742	33.333	6.09	0.00	0.00	1.63
488	508	6.529829	GTGTTTGTGTTGATTGTGTGTATGTT	59.470	34.615	0.00	0.00	0.00	2.71
583	1436	3.533606	AATATGCTTGCGTCTCTGTCT	57.466	42.857	0.00	0.00	0.00	3.41
687	1709	0.980231	TTTGGGCAGTTGGGTTTGCT	60.980	50.000	0.00	0.00	40.15	3.91
735	1760	4.516698	ACATCTGACAACAAGTGATTCCAC	59.483	41.667	0.00	0.00	43.50	4.02
770	1808	8.138712	TGTGGTACAGTTTCATTTTATTTCCAC	58.861	33.333	0.00	0.00	41.80	4.02
782	1820	4.968259	AGCTTACATGTGGTACAGTTTCA	58.032	39.130	9.11	0.00	41.80	2.69
800	1841	4.277515	TGAGTTCATGACTTGCTAGCTT	57.722	40.909	17.23	0.00	39.19	3.74
834	1875	9.533831	AGAAGATGCGGGGAAAATAATAATTAT	57.466	29.630	0.00	0.00	0.00	1.28
864	1914	6.266131	TGGGTATCTATTTCAAGGATGCTT	57.734	37.500	0.00	0.00	0.00	3.91
902	3353	7.344612	TGTGGAAAGAGTCTATGGCTATCTTTA	59.655	37.037	0.00	0.00	39.61	1.85
915	3372	1.290134	GGGGGATGTGGAAAGAGTCT	58.710	55.000	0.00	0.00	0.00	3.24
931	3388	0.179029	CGGTATTTGTAGCCTGGGGG	60.179	60.000	0.00	0.00	0.00	5.40
997	3464	1.964552	CTCTTGGAGGATGCCATGAC	58.035	55.000	0.00	0.00	37.23	3.06
1008	3475	3.588336	GCAAGGCTGCTCTTGGAG	58.412	61.111	23.12	7.33	45.74	3.86
1020	3487	0.387622	CCAGTGCGAACATTGCAAGG	60.388	55.000	10.01	10.01	45.23	3.61
1040	3507	0.177836	CACCACGGCCATGACTATGA	59.822	55.000	0.00	0.00	36.36	2.15
1254	3722	4.736896	GTCCACGACTGCCCGGAC	62.737	72.222	0.73	0.00	41.08	4.79
1461	3929	2.281208	CCGTTGAAGTTGCCCGGA	60.281	61.111	0.73	0.00	41.08	5.14
1540	4014	2.409651	GCACGTCACCCGCAAAAA	59.590	55.556	0.00	0.00	41.42	1.94
1547	4021	1.152989	TAAACACACGCACGTCACCC	61.153	55.000	0.00	0.00	0.00	4.61
1549	4023	1.790623	AGATAAACACACGCACGTCAC	59.209	47.619	0.00	0.00	0.00	3.67
1550	4024	1.790043	CAGATAAACACACGCACGTCA	59.210	47.619	0.00	0.00	0.00	4.35
1551	4025	1.790623	ACAGATAAACACACGCACGTC	59.209	47.619	0.00	0.00	0.00	4.34
1684	4176	6.660521	ACATTTGCATGTGGAGGTATATATGG	59.339	38.462	0.00	0.00	42.46	2.74
1697	4229	5.524646	ACAAAAGGAAAGACATTTGCATGTG	59.475	36.000	0.00	0.00	44.22	3.21
1738	4270	3.251004	CGTCATTTATTTGGCTAGCTCCC	59.749	47.826	15.72	0.00	0.00	4.30
1742	4274	6.954944	TGTTATCGTCATTTATTTGGCTAGC	58.045	36.000	6.04	6.04	0.00	3.42
1801	4334	9.346005	TGAAAGTATCGTCCAGTAAGTATATCA	57.654	33.333	0.00	0.00	0.00	2.15
1804	4337	9.793252	GTTTGAAAGTATCGTCCAGTAAGTATA	57.207	33.333	0.00	0.00	0.00	1.47
1805	4338	7.487189	CGTTTGAAAGTATCGTCCAGTAAGTAT	59.513	37.037	0.00	0.00	0.00	2.12
1806	4339	6.803320	CGTTTGAAAGTATCGTCCAGTAAGTA	59.197	38.462	0.00	0.00	0.00	2.24
1807	4340	5.632347	CGTTTGAAAGTATCGTCCAGTAAGT	59.368	40.000	0.00	0.00	0.00	2.24
1808	4341	5.860182	TCGTTTGAAAGTATCGTCCAGTAAG	59.140	40.000	0.00	0.00	0.00	2.34
1809	4342	5.771469	TCGTTTGAAAGTATCGTCCAGTAA	58.229	37.500	0.00	0.00	0.00	2.24
1810	4343	5.375417	TCGTTTGAAAGTATCGTCCAGTA	57.625	39.130	0.00	0.00	0.00	2.74
1811	4344	4.247267	TCGTTTGAAAGTATCGTCCAGT	57.753	40.909	0.00	0.00	0.00	4.00
1812	4345	5.585500	TTTCGTTTGAAAGTATCGTCCAG	57.415	39.130	0.00	0.00	39.13	3.86
1813	4346	6.548441	AATTTCGTTTGAAAGTATCGTCCA	57.452	33.333	0.00	0.00	46.62	4.02
1849	4893	5.014858	CGCTTACTGTAGGGGATATCCTTA	58.985	45.833	21.18	11.33	38.30	2.69
1858	4902	2.963782	ACCTTATCGCTTACTGTAGGGG	59.036	50.000	7.55	7.55	0.00	4.79
1859	4903	4.142004	ACAACCTTATCGCTTACTGTAGGG	60.142	45.833	0.00	0.00	0.00	3.53
1860	4904	5.007385	ACAACCTTATCGCTTACTGTAGG	57.993	43.478	0.00	0.00	0.00	3.18
1862	4906	8.252417	TCAAATACAACCTTATCGCTTACTGTA	58.748	33.333	0.00	0.00	0.00	2.74
1863	4907	7.101054	TCAAATACAACCTTATCGCTTACTGT	58.899	34.615	0.00	0.00	0.00	3.55
1865	4909	8.732746	AATCAAATACAACCTTATCGCTTACT	57.267	30.769	0.00	0.00	0.00	2.24
1869	6124	7.047891	TCAGAATCAAATACAACCTTATCGCT	58.952	34.615	0.00	0.00	0.00	4.93
1919	6174	9.927668	CACTGGGTTTATTATCTTTGAAAACAT	57.072	29.630	0.00	0.00	32.89	2.71
1962	6217	7.989416	TTCGTAATCAAACCCAATCTTACTT	57.011	32.000	0.00	0.00	0.00	2.24
1963	6218	7.989416	TTTCGTAATCAAACCCAATCTTACT	57.011	32.000	0.00	0.00	0.00	2.24
1964	6219	9.072294	CATTTTCGTAATCAAACCCAATCTTAC	57.928	33.333	0.00	0.00	0.00	2.34
1967	6222	7.040062	TGACATTTTCGTAATCAAACCCAATCT	60.040	33.333	0.00	0.00	0.00	2.40
1969	6224	6.987386	TGACATTTTCGTAATCAAACCCAAT	58.013	32.000	0.00	0.00	0.00	3.16
1990	6259	7.760340	AGATCTTTGTCTTCGTTATACCTTGAC	59.240	37.037	0.00	0.00	0.00	3.18
1992	6261	7.010552	CCAGATCTTTGTCTTCGTTATACCTTG	59.989	40.741	0.00	0.00	0.00	3.61
2081	6835	3.490526	CCTTTCTGTTTGTTTCATTGGCG	59.509	43.478	0.00	0.00	0.00	5.69
2093	6847	4.535526	ACAAACTTGTGCCTTTCTGTTT	57.464	36.364	0.00	0.00	40.49	2.83
2103	6857	7.515643	AGTCATTAACGTATACAAACTTGTGC	58.484	34.615	5.34	0.00	42.31	4.57
2202	6956	4.949856	AGTAAGAACCCATGCCAAACTATG	59.050	41.667	0.00	0.00	0.00	2.23
2276	7039	1.419387	AGCCTAGATGCACTCCAATCC	59.581	52.381	0.00	0.00	0.00	3.01
2286	7049	2.540265	ACACTATGCAGCCTAGATGC	57.460	50.000	11.38	11.68	45.81	3.91
2299	7062	2.763448	GCTGACTGAGAGGGAACACTAT	59.237	50.000	0.00	0.00	0.00	2.12
2315	7078	1.663643	TGTGACGAACAACAAGCTGAC	59.336	47.619	0.00	0.00	35.24	3.51
2410	7861	9.258826	CAAGGAAAACAACATGAACATGAAATA	57.741	29.630	19.56	0.00	41.20	1.40
2476	7928	5.163622	TGCATGGATAAGCTTTTAAGTGAGC	60.164	40.000	3.20	0.92	39.17	4.26

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.