Multiple sequence alignment - TraesCS7D01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G200600 chr7D 100.000 3068 0 0 1 3068 159061739 159064806 0.000000e+00 5666
1 TraesCS7D01G200600 chr7D 87.040 625 61 7 2457 3065 188949558 188950178 0.000000e+00 688
2 TraesCS7D01G200600 chr7B 89.633 3135 162 58 1 3068 119699544 119702582 0.000000e+00 3838
3 TraesCS7D01G200600 chr7B 86.741 626 60 11 2457 3065 333348060 333348679 0.000000e+00 675
4 TraesCS7D01G200600 chr7A 88.216 3123 175 66 1 3067 159559353 159556368 0.000000e+00 3550
5 TraesCS7D01G200600 chr7A 89.789 617 47 9 10 621 159578035 159577430 0.000000e+00 776
6 TraesCS7D01G200600 chr7A 82.724 793 70 30 37 817 159577113 159576376 0.000000e+00 643
7 TraesCS7D01G200600 chr7A 88.764 89 6 4 37 122 159577209 159577122 4.180000e-19 106
8 TraesCS7D01G200600 chr6A 88.199 966 95 15 1058 2007 548110758 548111720 0.000000e+00 1134
9 TraesCS7D01G200600 chr6D 87.904 959 100 13 1063 2007 401737115 401738071 0.000000e+00 1114
10 TraesCS7D01G200600 chr6B 85.906 1043 122 19 983 2007 602504159 602505194 0.000000e+00 1088
11 TraesCS7D01G200600 chr6B 83.612 299 35 11 1153 1438 85848898 85849195 5.040000e-68 268
12 TraesCS7D01G200600 chr4D 85.766 836 101 10 1153 1974 399420202 399419371 0.000000e+00 869
13 TraesCS7D01G200600 chr4D 76.786 840 147 40 1163 1978 9206428 9207243 7.860000e-116 427
14 TraesCS7D01G200600 chr1B 83.394 825 106 22 1154 1961 668249327 668250137 0.000000e+00 736
15 TraesCS7D01G200600 chr4A 76.941 837 151 32 1163 1978 594270479 594269664 3.630000e-119 438
16 TraesCS7D01G200600 chr4B 76.190 840 152 40 1163 1978 17083453 17084268 1.710000e-107 399


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G200600 chr7D 159061739 159064806 3067 False 5666.000000 5666 100.000000 1 3068 1 chr7D.!!$F1 3067
1 TraesCS7D01G200600 chr7D 188949558 188950178 620 False 688.000000 688 87.040000 2457 3065 1 chr7D.!!$F2 608
2 TraesCS7D01G200600 chr7B 119699544 119702582 3038 False 3838.000000 3838 89.633000 1 3068 1 chr7B.!!$F1 3067
3 TraesCS7D01G200600 chr7B 333348060 333348679 619 False 675.000000 675 86.741000 2457 3065 1 chr7B.!!$F2 608
4 TraesCS7D01G200600 chr7A 159556368 159559353 2985 True 3550.000000 3550 88.216000 1 3067 1 chr7A.!!$R1 3066
5 TraesCS7D01G200600 chr7A 159576376 159578035 1659 True 508.333333 776 87.092333 10 817 3 chr7A.!!$R2 807
6 TraesCS7D01G200600 chr6A 548110758 548111720 962 False 1134.000000 1134 88.199000 1058 2007 1 chr6A.!!$F1 949
7 TraesCS7D01G200600 chr6D 401737115 401738071 956 False 1114.000000 1114 87.904000 1063 2007 1 chr6D.!!$F1 944
8 TraesCS7D01G200600 chr6B 602504159 602505194 1035 False 1088.000000 1088 85.906000 983 2007 1 chr6B.!!$F2 1024
9 TraesCS7D01G200600 chr4D 399419371 399420202 831 True 869.000000 869 85.766000 1153 1974 1 chr4D.!!$R1 821
10 TraesCS7D01G200600 chr4D 9206428 9207243 815 False 427.000000 427 76.786000 1163 1978 1 chr4D.!!$F1 815
11 TraesCS7D01G200600 chr1B 668249327 668250137 810 False 736.000000 736 83.394000 1154 1961 1 chr1B.!!$F1 807
12 TraesCS7D01G200600 chr4A 594269664 594270479 815 True 438.000000 438 76.941000 1163 1978 1 chr4A.!!$R1 815
13 TraesCS7D01G200600 chr4B 17083453 17084268 815 False 399.000000 399 76.190000 1163 1978 1 chr4B.!!$F1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 1622 0.250338 GGAAGTGACCGAGCAACCTT 60.25 55.0 0.0 0.0 0.0 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 3617 0.038744 CTGAAGGACATGGTTGCCCT 59.961 55.0 0.0 0.0 37.31 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.528018 AACAAAATGTCAACGTGAGAAATAAAT 57.472 25.926 0.00 0.00 0.00 1.40
64 66 6.636447 TCAACGTGAGAAATAAATGCAACAAG 59.364 34.615 0.00 0.00 0.00 3.16
66 68 6.734137 ACGTGAGAAATAAATGCAACAAGAA 58.266 32.000 0.00 0.00 0.00 2.52
110 113 8.718158 TGGCACATCCAATGGATATAAAATAA 57.282 30.769 15.31 0.00 40.98 1.40
111 114 9.324008 TGGCACATCCAATGGATATAAAATAAT 57.676 29.630 15.31 0.00 40.98 1.28
161 165 9.926751 GGATATCGATATTAATTTGCACATGAG 57.073 33.333 18.69 0.00 0.00 2.90
194 198 5.175127 AGTTGACCAAACAAATCAAACACC 58.825 37.500 0.00 0.00 41.61 4.16
273 277 9.585369 TGCCAAATAAAATATCTCACCATATCA 57.415 29.630 0.00 0.00 0.00 2.15
294 298 7.902387 ATCACAGATATATGAAGCACATCAC 57.098 36.000 3.93 0.00 40.07 3.06
318 322 4.268644 CGAGATACACATGTGAACATCCAC 59.731 45.833 31.94 21.00 33.61 4.02
353 357 1.029947 CCGCGGGCCTACTCAAAAAT 61.030 55.000 20.10 0.00 0.00 1.82
359 363 4.620567 GCGGGCCTACTCAAAAATTCATTT 60.621 41.667 0.84 0.00 0.00 2.32
360 364 5.393678 GCGGGCCTACTCAAAAATTCATTTA 60.394 40.000 0.84 0.00 0.00 1.40
361 365 6.265577 CGGGCCTACTCAAAAATTCATTTAG 58.734 40.000 0.84 0.00 0.00 1.85
506 513 6.855836 TGATTTTGTCAATGCCAAGAGATAC 58.144 36.000 0.00 0.00 32.78 2.24
524 531 6.712095 AGAGATACACAACATGAGCTCAAAAA 59.288 34.615 22.50 0.00 0.00 1.94
525 532 7.392673 AGAGATACACAACATGAGCTCAAAAAT 59.607 33.333 22.50 0.00 0.00 1.82
531 538 7.496591 ACACAACATGAGCTCAAAAATCAAAAT 59.503 29.630 22.50 0.00 0.00 1.82
532 539 7.796660 CACAACATGAGCTCAAAAATCAAAATG 59.203 33.333 22.50 12.55 0.00 2.32
533 540 6.476243 ACATGAGCTCAAAAATCAAAATGC 57.524 33.333 22.50 0.00 0.00 3.56
537 1421 6.950545 TGAGCTCAAAAATCAAAATGCAAAG 58.049 32.000 15.67 0.00 0.00 2.77
539 1423 6.951643 AGCTCAAAAATCAAAATGCAAAGAC 58.048 32.000 0.00 0.00 0.00 3.01
593 1483 0.668401 GGCAAAACCTCAGTGCATGC 60.668 55.000 11.82 11.82 40.12 4.06
607 1497 4.860907 CAGTGCATGCTTTTCTATGGAAAC 59.139 41.667 20.33 3.47 40.63 2.78
625 1515 7.252612 TGGAAACCAGAATCTTCATGTAGTA 57.747 36.000 0.00 0.00 0.00 1.82
626 1516 7.685481 TGGAAACCAGAATCTTCATGTAGTAA 58.315 34.615 0.00 0.00 0.00 2.24
627 1517 8.328758 TGGAAACCAGAATCTTCATGTAGTAAT 58.671 33.333 0.00 0.00 0.00 1.89
628 1518 8.616076 GGAAACCAGAATCTTCATGTAGTAATG 58.384 37.037 0.00 0.00 0.00 1.90
629 1519 9.167311 GAAACCAGAATCTTCATGTAGTAATGT 57.833 33.333 0.00 0.00 0.00 2.71
630 1520 9.520515 AAACCAGAATCTTCATGTAGTAATGTT 57.479 29.630 0.00 0.00 0.00 2.71
631 1521 8.498054 ACCAGAATCTTCATGTAGTAATGTTG 57.502 34.615 0.00 0.00 0.00 3.33
632 1522 8.103305 ACCAGAATCTTCATGTAGTAATGTTGT 58.897 33.333 0.00 0.00 0.00 3.32
633 1523 9.599866 CCAGAATCTTCATGTAGTAATGTTGTA 57.400 33.333 0.00 0.00 0.00 2.41
680 1573 6.311935 ACAATTAAAGCATGCAACAGCTAATG 59.688 34.615 21.98 9.71 40.90 1.90
699 1593 0.732538 GGCGTGGCCGAATTGAAAAG 60.733 55.000 0.00 0.00 39.62 2.27
705 1599 2.739913 TGGCCGAATTGAAAAGTAGACG 59.260 45.455 0.00 0.00 0.00 4.18
728 1622 0.250338 GGAAGTGACCGAGCAACCTT 60.250 55.000 0.00 0.00 0.00 3.50
835 1736 2.784654 CCTCCCCCAAAACCCACCA 61.785 63.158 0.00 0.00 0.00 4.17
840 1741 0.766288 CCCCAAAACCCACCACCATT 60.766 55.000 0.00 0.00 0.00 3.16
841 1742 0.684535 CCCAAAACCCACCACCATTC 59.315 55.000 0.00 0.00 0.00 2.67
842 1743 0.684535 CCAAAACCCACCACCATTCC 59.315 55.000 0.00 0.00 0.00 3.01
843 1744 0.684535 CAAAACCCACCACCATTCCC 59.315 55.000 0.00 0.00 0.00 3.97
844 1745 0.266152 AAAACCCACCACCATTCCCA 59.734 50.000 0.00 0.00 0.00 4.37
886 1787 2.803670 CGCCGATACATACGCCCG 60.804 66.667 0.00 0.00 0.00 6.13
887 1788 3.110178 GCCGATACATACGCCCGC 61.110 66.667 0.00 0.00 0.00 6.13
888 1789 2.431942 CCGATACATACGCCCGCC 60.432 66.667 0.00 0.00 0.00 6.13
889 1790 2.431942 CGATACATACGCCCGCCC 60.432 66.667 0.00 0.00 0.00 6.13
1052 1963 0.836400 TTCTTCTTCCTCCTGGCCGT 60.836 55.000 0.00 0.00 0.00 5.68
1053 1964 1.219393 CTTCTTCCTCCTGGCCGTC 59.781 63.158 0.00 0.00 0.00 4.79
1054 1965 2.245438 CTTCTTCCTCCTGGCCGTCC 62.245 65.000 0.00 0.00 0.00 4.79
2013 2944 2.184830 CGACCTCTACATCGCCGGA 61.185 63.158 5.05 0.00 0.00 5.14
2094 3027 0.811915 CCGTAGCTGCACTGACTAGT 59.188 55.000 1.02 0.00 37.75 2.57
2142 3075 3.755628 CTTGGCAATGGCAGCGCT 61.756 61.111 2.64 2.64 43.71 5.92
2197 3149 2.459710 GGGGGAAGGAAGGGAGGA 59.540 66.667 0.00 0.00 0.00 3.71
2318 3275 3.609853 GGGGGATTTGGATTCTTTTTGC 58.390 45.455 0.00 0.00 0.00 3.68
2467 3430 7.897575 AGACTATGTGTTCTTGATCTGAAAC 57.102 36.000 0.00 0.00 0.00 2.78
2487 3454 3.152341 ACTCTGGTCTCTGCATTTTTGG 58.848 45.455 0.00 0.00 0.00 3.28
2555 3526 5.245531 TGTATCTGGTTCTGATGTGGTTTC 58.754 41.667 0.00 0.00 0.00 2.78
2639 3616 7.370383 TCTGCATTTTTGTAGAATTCAGAACC 58.630 34.615 8.44 0.00 35.08 3.62
2640 3617 7.014134 TCTGCATTTTTGTAGAATTCAGAACCA 59.986 33.333 8.44 0.00 35.08 3.67
2662 3639 2.450476 GGCAACCATGTCCTTCAGATT 58.550 47.619 0.00 0.00 0.00 2.40
2663 3640 2.165030 GGCAACCATGTCCTTCAGATTG 59.835 50.000 0.00 0.00 0.00 2.67
2664 3641 3.084039 GCAACCATGTCCTTCAGATTGA 58.916 45.455 0.00 0.00 0.00 2.57
2665 3642 3.698040 GCAACCATGTCCTTCAGATTGAT 59.302 43.478 0.00 0.00 0.00 2.57
2666 3643 4.439700 GCAACCATGTCCTTCAGATTGATG 60.440 45.833 0.00 0.00 0.00 3.07
2667 3644 3.894759 ACCATGTCCTTCAGATTGATGG 58.105 45.455 0.00 0.00 41.54 3.51
2668 3645 3.524789 ACCATGTCCTTCAGATTGATGGA 59.475 43.478 9.01 9.01 45.11 3.41
2669 3646 4.135306 CCATGTCCTTCAGATTGATGGAG 58.865 47.826 12.41 3.83 47.00 3.86
2670 3647 3.920231 TGTCCTTCAGATTGATGGAGG 57.080 47.619 12.41 1.07 47.00 4.30
2671 3648 2.092753 TGTCCTTCAGATTGATGGAGGC 60.093 50.000 12.41 4.91 47.00 4.70
2672 3649 2.092753 GTCCTTCAGATTGATGGAGGCA 60.093 50.000 12.41 0.00 47.00 4.75
2673 3650 2.781757 TCCTTCAGATTGATGGAGGCAT 59.218 45.455 9.01 0.00 44.66 4.40
2674 3651 2.885266 CCTTCAGATTGATGGAGGCATG 59.115 50.000 5.33 0.00 42.46 4.06
2675 3652 2.651382 TCAGATTGATGGAGGCATGG 57.349 50.000 0.00 0.00 0.00 3.66
2676 3653 1.144298 TCAGATTGATGGAGGCATGGG 59.856 52.381 0.00 0.00 0.00 4.00
2677 3654 0.178970 AGATTGATGGAGGCATGGGC 60.179 55.000 0.00 0.00 40.13 5.36
2718 3711 0.249657 AGCAATTTTCGCCGGCAAAA 60.250 45.000 28.98 27.93 0.00 2.44
2827 3826 6.403636 GCAGGAAATCAATACTACACACAAGG 60.404 42.308 0.00 0.00 0.00 3.61
2867 3867 7.649705 GGAGGTTCAAAGTTTCTCTTCAAAATC 59.350 37.037 3.00 0.00 35.02 2.17
2945 3963 6.691754 TCAACTACATTTGTTCTTGAGCAA 57.308 33.333 0.00 0.00 0.00 3.91
2946 3964 6.494842 TCAACTACATTTGTTCTTGAGCAAC 58.505 36.000 0.00 0.00 0.00 4.17
3001 4019 8.537049 TTTAGGATGTCAAATCATTTTGCTTG 57.463 30.769 0.00 0.00 41.66 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.142790 ACTGAGACGTTCTTTCTCTGGTA 58.857 43.478 11.14 0.00 41.17 3.25
19 20 6.410914 CGTTGACATTTTGTTGTAACTGAGAC 59.589 38.462 0.00 0.00 0.00 3.36
56 57 9.995003 ATATGTTTCCTAATTTTTCTTGTTGCA 57.005 25.926 0.00 0.00 0.00 4.08
66 68 9.737844 ATGTGCCAAAATATGTTTCCTAATTTT 57.262 25.926 0.00 0.00 33.07 1.82
125 129 0.976641 ATCGATATCCACACGGCCAT 59.023 50.000 2.24 0.00 0.00 4.40
129 133 7.148490 TGCAAATTAATATCGATATCCACACGG 60.148 37.037 18.01 7.27 0.00 4.94
161 165 3.314080 TGTTTGGTCAACTTTCGTCCATC 59.686 43.478 0.00 0.00 36.21 3.51
194 198 3.724508 TTTGTTGTAGCAATGGTGGTG 57.275 42.857 0.00 0.00 36.66 4.17
266 270 8.959705 ATGTGCTTCATATATCTGTGATATGG 57.040 34.615 9.56 3.64 37.70 2.74
273 277 5.011023 TCGGTGATGTGCTTCATATATCTGT 59.989 40.000 0.00 0.00 36.83 3.41
294 298 3.804325 GGATGTTCACATGTGTATCTCGG 59.196 47.826 24.63 0.00 36.57 4.63
318 322 3.562869 CGGCTTTCGCGAACTAAAG 57.437 52.632 23.33 17.22 36.88 1.85
339 343 7.915923 GCTACTAAATGAATTTTTGAGTAGGCC 59.084 37.037 18.96 0.00 36.81 5.19
345 349 9.825972 TTCTTCGCTACTAAATGAATTTTTGAG 57.174 29.630 0.00 0.00 0.00 3.02
353 357 5.938125 AGGCTTTTCTTCGCTACTAAATGAA 59.062 36.000 0.00 0.00 0.00 2.57
359 363 6.276832 TCTTTAGGCTTTTCTTCGCTACTA 57.723 37.500 0.00 0.00 0.00 1.82
360 364 5.148651 TCTTTAGGCTTTTCTTCGCTACT 57.851 39.130 0.00 0.00 0.00 2.57
361 365 5.581085 TGATCTTTAGGCTTTTCTTCGCTAC 59.419 40.000 0.00 0.00 0.00 3.58
394 398 9.237187 TGGTCTATAAAGTCAATTGCATGTTTA 57.763 29.630 0.00 2.75 0.00 2.01
440 445 4.836125 ATGACATATTTCCGCCATTGAC 57.164 40.909 0.00 0.00 0.00 3.18
447 452 9.599322 CATTTTAGACTAATGACATATTTCCGC 57.401 33.333 0.00 0.00 35.49 5.54
506 513 6.831727 TTTGATTTTTGAGCTCATGTTGTG 57.168 33.333 19.04 0.00 0.00 3.33
524 531 4.154942 AGAGTGGGTCTTTGCATTTTGAT 58.845 39.130 0.00 0.00 27.07 2.57
525 532 3.565307 AGAGTGGGTCTTTGCATTTTGA 58.435 40.909 0.00 0.00 27.07 2.69
531 538 0.108585 GGTGAGAGTGGGTCTTTGCA 59.891 55.000 0.00 0.00 34.71 4.08
532 539 0.108585 TGGTGAGAGTGGGTCTTTGC 59.891 55.000 0.00 0.00 34.71 3.68
533 540 2.867109 ATGGTGAGAGTGGGTCTTTG 57.133 50.000 0.00 0.00 34.71 2.77
537 1421 5.834204 ACTAGTATAATGGTGAGAGTGGGTC 59.166 44.000 0.00 0.00 0.00 4.46
539 1423 5.011125 CCACTAGTATAATGGTGAGAGTGGG 59.989 48.000 17.02 0.00 45.85 4.61
593 1483 8.340618 TGAAGATTCTGGTTTCCATAGAAAAG 57.659 34.615 0.00 0.00 43.48 2.27
607 1497 8.498054 ACAACATTACTACATGAAGATTCTGG 57.502 34.615 0.00 0.00 0.00 3.86
680 1573 0.732538 CTTTTCAATTCGGCCACGCC 60.733 55.000 2.24 0.00 46.75 5.68
699 1593 1.202268 CGGTCACTTCCATCCGTCTAC 60.202 57.143 0.00 0.00 38.45 2.59
705 1599 0.036388 TTGCTCGGTCACTTCCATCC 60.036 55.000 0.00 0.00 0.00 3.51
801 1695 1.413077 GGAGGTCTCCGGTGATAAAGG 59.587 57.143 9.83 0.00 40.36 3.11
835 1736 0.110486 GCGTATGGGATGGGAATGGT 59.890 55.000 0.00 0.00 0.00 3.55
840 1741 3.157949 TGCGCGTATGGGATGGGA 61.158 61.111 8.43 0.00 0.00 4.37
841 1742 2.972505 GTGCGCGTATGGGATGGG 60.973 66.667 8.43 0.00 0.00 4.00
842 1743 2.972505 GGTGCGCGTATGGGATGG 60.973 66.667 8.43 0.00 0.00 3.51
843 1744 3.337889 CGGTGCGCGTATGGGATG 61.338 66.667 8.43 0.00 0.00 3.51
1329 2258 0.739561 GGTAGATCTCGAACCGCAGT 59.260 55.000 0.00 0.00 0.00 4.40
2094 3027 8.354426 GCCTAACCAACAAAAGAATTACTGTAA 58.646 33.333 2.26 2.26 0.00 2.41
2117 3050 1.978617 CCATTGCCAAGAACCGCCT 60.979 57.895 0.00 0.00 0.00 5.52
2183 3135 1.448069 GCGATCCTCCCTTCCTTCC 59.552 63.158 0.00 0.00 0.00 3.46
2184 3136 1.448069 GGCGATCCTCCCTTCCTTC 59.552 63.158 0.00 0.00 0.00 3.46
2185 3137 2.435693 CGGCGATCCTCCCTTCCTT 61.436 63.158 0.00 0.00 0.00 3.36
2186 3138 2.840102 CGGCGATCCTCCCTTCCT 60.840 66.667 0.00 0.00 0.00 3.36
2252 3207 5.921962 ACCAAAAAGAACAAGCTCTTCTT 57.078 34.783 11.78 11.78 39.23 2.52
2253 3208 6.357367 TCTACCAAAAAGAACAAGCTCTTCT 58.643 36.000 1.52 1.52 34.49 2.85
2318 3275 1.683917 CCCTAGAATGTCCACCTCGAG 59.316 57.143 5.13 5.13 0.00 4.04
2445 3408 7.601886 CAGAGTTTCAGATCAAGAACACATAGT 59.398 37.037 0.00 0.00 0.00 2.12
2467 3430 2.490903 CCCAAAAATGCAGAGACCAGAG 59.509 50.000 0.00 0.00 0.00 3.35
2487 3454 3.347958 TCAACTGAATTTGACGCAACC 57.652 42.857 0.00 0.00 30.29 3.77
2566 3537 3.372954 ACATTCGAGCGATAGTGTAAGC 58.627 45.455 0.00 0.00 39.35 3.09
2639 3616 0.251297 TGAAGGACATGGTTGCCCTG 60.251 55.000 0.00 0.00 35.63 4.45
2640 3617 0.038744 CTGAAGGACATGGTTGCCCT 59.961 55.000 0.00 0.00 37.31 5.19
2653 3630 2.723322 TGCCTCCATCAATCTGAAGG 57.277 50.000 0.00 0.00 36.63 3.46
2662 3639 1.573607 TTCAGCCCATGCCTCCATCA 61.574 55.000 0.00 0.00 38.69 3.07
2663 3640 0.396139 TTTCAGCCCATGCCTCCATC 60.396 55.000 0.00 0.00 38.69 3.51
2664 3641 0.263765 ATTTCAGCCCATGCCTCCAT 59.736 50.000 0.00 0.00 38.69 3.41
2665 3642 0.685131 CATTTCAGCCCATGCCTCCA 60.685 55.000 0.00 0.00 38.69 3.86
2666 3643 0.685458 ACATTTCAGCCCATGCCTCC 60.685 55.000 0.00 0.00 38.69 4.30
2667 3644 1.134907 CAACATTTCAGCCCATGCCTC 60.135 52.381 0.00 0.00 38.69 4.70
2668 3645 0.899720 CAACATTTCAGCCCATGCCT 59.100 50.000 0.00 0.00 38.69 4.75
2669 3646 0.896923 TCAACATTTCAGCCCATGCC 59.103 50.000 0.00 0.00 38.69 4.40
2670 3647 2.028748 AGTTCAACATTTCAGCCCATGC 60.029 45.455 0.00 0.00 37.95 4.06
2671 3648 3.256383 TCAGTTCAACATTTCAGCCCATG 59.744 43.478 0.00 0.00 0.00 3.66
2672 3649 3.499338 TCAGTTCAACATTTCAGCCCAT 58.501 40.909 0.00 0.00 0.00 4.00
2673 3650 2.942804 TCAGTTCAACATTTCAGCCCA 58.057 42.857 0.00 0.00 0.00 5.36
2674 3651 4.320608 TTTCAGTTCAACATTTCAGCCC 57.679 40.909 0.00 0.00 0.00 5.19
2675 3652 6.042143 TCTTTTTCAGTTCAACATTTCAGCC 58.958 36.000 0.00 0.00 0.00 4.85
2676 3653 6.292008 GCTCTTTTTCAGTTCAACATTTCAGC 60.292 38.462 0.00 0.00 0.00 4.26
2677 3654 6.753279 TGCTCTTTTTCAGTTCAACATTTCAG 59.247 34.615 0.00 0.00 0.00 3.02
2718 3711 4.225042 TGTAGTACATCAGGAACAGCCAAT 59.775 41.667 0.00 0.00 40.02 3.16
2827 3826 2.352805 CTCCCCAGTCACAAGCCC 59.647 66.667 0.00 0.00 0.00 5.19
2867 3867 1.207811 GAAATTGATTGGGCACAGGGG 59.792 52.381 0.00 0.00 0.00 4.79
2945 3963 9.155975 GATATGTTCACTTGTTTAGAGATGTGT 57.844 33.333 0.00 0.00 0.00 3.72
2946 3964 9.154847 TGATATGTTCACTTGTTTAGAGATGTG 57.845 33.333 0.00 0.00 0.00 3.21
3024 4042 2.927477 CGAGCGGATAAGTTAAACAGCA 59.073 45.455 14.07 0.00 0.00 4.41
3025 4043 2.285660 GCGAGCGGATAAGTTAAACAGC 60.286 50.000 0.00 7.21 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.