Multiple sequence alignment - TraesCS7D01G200000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G200000 chr7D 100.000 2942 0 0 1 2942 156827463 156824522 0.000000e+00 5433.0
1 TraesCS7D01G200000 chr7D 95.070 791 36 3 2155 2942 260977 261767 0.000000e+00 1242.0
2 TraesCS7D01G200000 chr7D 94.578 793 38 4 2155 2942 185760501 185759709 0.000000e+00 1221.0
3 TraesCS7D01G200000 chr7D 94.325 793 42 3 2153 2942 501110676 501109884 0.000000e+00 1212.0
4 TraesCS7D01G200000 chr7D 94.430 790 39 4 2156 2942 144159706 144158919 0.000000e+00 1210.0
5 TraesCS7D01G200000 chr7D 85.551 263 34 3 126 387 578688286 578688027 3.740000e-69 272.0
6 TraesCS7D01G200000 chr7D 90.833 120 9 2 1 118 578693395 578693276 3.030000e-35 159.0
7 TraesCS7D01G200000 chr7D 80.645 124 24 0 394 517 509615271 509615394 2.410000e-16 97.1
8 TraesCS7D01G200000 chr7B 92.767 1507 78 17 640 2131 119248245 119246755 0.000000e+00 2150.0
9 TraesCS7D01G200000 chr7B 86.189 391 46 7 1 387 642459005 642458619 1.630000e-112 416.0
10 TraesCS7D01G200000 chr3D 94.684 790 35 5 2156 2942 553039006 553039791 0.000000e+00 1219.0
11 TraesCS7D01G200000 chr3D 94.557 790 40 3 2156 2942 120626123 120626912 0.000000e+00 1218.0
12 TraesCS7D01G200000 chr3D 85.934 391 43 10 1 387 47247209 47247591 9.820000e-110 407.0
13 TraesCS7D01G200000 chr3D 79.832 119 24 0 394 512 306515299 306515181 1.450000e-13 87.9
14 TraesCS7D01G200000 chr2D 94.550 789 39 4 2157 2942 461080532 461081319 0.000000e+00 1216.0
15 TraesCS7D01G200000 chr2D 94.325 793 42 3 2153 2942 171443023 171443815 0.000000e+00 1212.0
16 TraesCS7D01G200000 chr2D 94.311 791 41 4 2155 2942 627897217 627896428 0.000000e+00 1208.0
17 TraesCS7D01G200000 chr2D 85.841 113 16 0 411 523 333226835 333226723 1.430000e-23 121.0
18 TraesCS7D01G200000 chr7A 93.423 745 41 2 1387 2131 211738651 211737915 0.000000e+00 1098.0
19 TraesCS7D01G200000 chr7A 90.731 766 49 11 640 1384 157596745 157595981 0.000000e+00 1002.0
20 TraesCS7D01G200000 chr7A 96.078 51 2 0 2081 2131 211737906 211737856 1.880000e-12 84.2
21 TraesCS7D01G200000 chr7A 83.824 68 11 0 445 512 563356348 563356281 6.810000e-07 65.8
22 TraesCS7D01G200000 chr1B 86.923 390 45 5 1 389 206418291 206417907 1.620000e-117 433.0
23 TraesCS7D01G200000 chr1A 88.660 291 32 1 1 290 157318204 157318494 1.300000e-93 353.0
24 TraesCS7D01G200000 chr6A 83.200 125 20 1 389 513 117350658 117350781 2.400000e-21 113.0
25 TraesCS7D01G200000 chr3B 94.737 57 2 1 1 57 73827578 73827633 1.450000e-13 87.9
26 TraesCS7D01G200000 chr4A 79.661 118 20 4 402 517 722320869 722320984 6.760000e-12 82.4
27 TraesCS7D01G200000 chr4A 83.333 84 12 1 402 483 722323446 722323529 3.140000e-10 76.8
28 TraesCS7D01G200000 chr4A 85.714 63 8 1 461 523 117892974 117892913 6.810000e-07 65.8
29 TraesCS7D01G200000 chr2B 86.364 66 9 0 451 516 232352637 232352572 4.070000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G200000 chr7D 156824522 156827463 2941 True 5433.0 5433 100.0000 1 2942 1 chr7D.!!$R2 2941
1 TraesCS7D01G200000 chr7D 260977 261767 790 False 1242.0 1242 95.0700 2155 2942 1 chr7D.!!$F1 787
2 TraesCS7D01G200000 chr7D 185759709 185760501 792 True 1221.0 1221 94.5780 2155 2942 1 chr7D.!!$R3 787
3 TraesCS7D01G200000 chr7D 501109884 501110676 792 True 1212.0 1212 94.3250 2153 2942 1 chr7D.!!$R4 789
4 TraesCS7D01G200000 chr7D 144158919 144159706 787 True 1210.0 1210 94.4300 2156 2942 1 chr7D.!!$R1 786
5 TraesCS7D01G200000 chr7B 119246755 119248245 1490 True 2150.0 2150 92.7670 640 2131 1 chr7B.!!$R1 1491
6 TraesCS7D01G200000 chr3D 553039006 553039791 785 False 1219.0 1219 94.6840 2156 2942 1 chr3D.!!$F3 786
7 TraesCS7D01G200000 chr3D 120626123 120626912 789 False 1218.0 1218 94.5570 2156 2942 1 chr3D.!!$F2 786
8 TraesCS7D01G200000 chr2D 461080532 461081319 787 False 1216.0 1216 94.5500 2157 2942 1 chr2D.!!$F2 785
9 TraesCS7D01G200000 chr2D 171443023 171443815 792 False 1212.0 1212 94.3250 2153 2942 1 chr2D.!!$F1 789
10 TraesCS7D01G200000 chr2D 627896428 627897217 789 True 1208.0 1208 94.3110 2155 2942 1 chr2D.!!$R2 787
11 TraesCS7D01G200000 chr7A 157595981 157596745 764 True 1002.0 1002 90.7310 640 1384 1 chr7A.!!$R1 744
12 TraesCS7D01G200000 chr7A 211737856 211738651 795 True 591.1 1098 94.7505 1387 2131 2 chr7A.!!$R3 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 622 0.098905 GTAGTCGACGAGAGCATGCA 59.901 55.0 21.98 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2315 2401 0.251742 TATTTGGCCCAGCTTGCACT 60.252 50.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 8.407457 TCTACTGCTATAGTTGAAAATGAACG 57.593 34.615 0.84 0.00 38.04 3.95
60 61 8.033038 TCTACTGCTATAGTTGAAAATGAACGT 58.967 33.333 0.84 0.00 38.04 3.99
61 62 6.831769 ACTGCTATAGTTGAAAATGAACGTG 58.168 36.000 0.84 0.00 35.67 4.49
62 63 6.426937 ACTGCTATAGTTGAAAATGAACGTGT 59.573 34.615 0.84 0.00 35.67 4.49
63 64 7.601130 ACTGCTATAGTTGAAAATGAACGTGTA 59.399 33.333 0.84 0.00 35.67 2.90
64 65 8.487313 TGCTATAGTTGAAAATGAACGTGTAT 57.513 30.769 0.84 0.00 0.00 2.29
65 66 9.589111 TGCTATAGTTGAAAATGAACGTGTATA 57.411 29.630 0.84 0.00 0.00 1.47
269 270 7.900782 TGTTGTCTAAGTTAGGTCATTTAGC 57.099 36.000 10.02 0.00 0.00 3.09
270 271 7.446769 TGTTGTCTAAGTTAGGTCATTTAGCA 58.553 34.615 10.02 3.37 0.00 3.49
271 272 7.934665 TGTTGTCTAAGTTAGGTCATTTAGCAA 59.065 33.333 10.02 0.76 0.00 3.91
272 273 8.443937 GTTGTCTAAGTTAGGTCATTTAGCAAG 58.556 37.037 10.02 0.00 0.00 4.01
273 274 7.676947 TGTCTAAGTTAGGTCATTTAGCAAGT 58.323 34.615 10.02 0.00 0.00 3.16
274 275 7.602644 TGTCTAAGTTAGGTCATTTAGCAAGTG 59.397 37.037 10.02 0.00 0.00 3.16
275 276 7.064728 GTCTAAGTTAGGTCATTTAGCAAGTGG 59.935 40.741 10.02 0.00 0.00 4.00
276 277 5.242795 AGTTAGGTCATTTAGCAAGTGGT 57.757 39.130 0.00 0.00 0.00 4.16
277 278 6.368779 AGTTAGGTCATTTAGCAAGTGGTA 57.631 37.500 0.00 0.00 0.00 3.25
278 279 6.171213 AGTTAGGTCATTTAGCAAGTGGTAC 58.829 40.000 0.00 0.00 0.00 3.34
279 280 4.634012 AGGTCATTTAGCAAGTGGTACA 57.366 40.909 0.00 0.00 0.00 2.90
280 281 4.579869 AGGTCATTTAGCAAGTGGTACAG 58.420 43.478 0.00 0.00 41.80 2.74
281 282 3.127030 GGTCATTTAGCAAGTGGTACAGC 59.873 47.826 0.00 0.00 41.80 4.40
282 283 3.751175 GTCATTTAGCAAGTGGTACAGCA 59.249 43.478 0.00 0.00 41.80 4.41
283 284 4.215399 GTCATTTAGCAAGTGGTACAGCAA 59.785 41.667 0.00 0.00 41.80 3.91
284 285 4.824537 TCATTTAGCAAGTGGTACAGCAAA 59.175 37.500 0.00 0.00 41.80 3.68
285 286 5.300539 TCATTTAGCAAGTGGTACAGCAAAA 59.699 36.000 0.00 0.00 41.80 2.44
286 287 5.782893 TTTAGCAAGTGGTACAGCAAAAT 57.217 34.783 0.00 0.00 41.80 1.82
287 288 3.648339 AGCAAGTGGTACAGCAAAATG 57.352 42.857 0.00 0.00 41.80 2.32
288 289 2.958355 AGCAAGTGGTACAGCAAAATGT 59.042 40.909 0.00 0.00 41.80 2.71
289 290 4.141287 AGCAAGTGGTACAGCAAAATGTA 58.859 39.130 0.00 0.00 41.80 2.29
290 291 4.216257 AGCAAGTGGTACAGCAAAATGTAG 59.784 41.667 0.00 0.00 41.80 2.74
328 329 9.647918 AAGATACTATTACACTGAAGGAGATGA 57.352 33.333 0.00 0.00 0.00 2.92
329 330 9.073475 AGATACTATTACACTGAAGGAGATGAC 57.927 37.037 0.00 0.00 0.00 3.06
330 331 9.073475 GATACTATTACACTGAAGGAGATGACT 57.927 37.037 0.00 0.00 0.00 3.41
331 332 7.341445 ACTATTACACTGAAGGAGATGACTC 57.659 40.000 0.00 0.00 41.94 3.36
332 333 6.892456 ACTATTACACTGAAGGAGATGACTCA 59.108 38.462 0.00 0.00 44.22 3.41
333 334 6.611613 ATTACACTGAAGGAGATGACTCAA 57.388 37.500 0.00 0.00 44.22 3.02
334 335 4.963318 ACACTGAAGGAGATGACTCAAA 57.037 40.909 0.00 0.00 44.22 2.69
335 336 5.296151 ACACTGAAGGAGATGACTCAAAA 57.704 39.130 0.00 0.00 44.22 2.44
336 337 5.303971 ACACTGAAGGAGATGACTCAAAAG 58.696 41.667 0.00 0.00 44.22 2.27
337 338 4.694509 CACTGAAGGAGATGACTCAAAAGG 59.305 45.833 0.00 0.00 44.22 3.11
338 339 4.594920 ACTGAAGGAGATGACTCAAAAGGA 59.405 41.667 0.00 0.00 44.22 3.36
357 358 9.918630 CAAAAGGAGAAAATATGAATGACAAGT 57.081 29.630 0.00 0.00 0.00 3.16
358 359 9.918630 AAAAGGAGAAAATATGAATGACAAGTG 57.081 29.630 0.00 0.00 0.00 3.16
359 360 8.641498 AAGGAGAAAATATGAATGACAAGTGT 57.359 30.769 0.00 0.00 0.00 3.55
360 361 9.739276 AAGGAGAAAATATGAATGACAAGTGTA 57.261 29.630 0.00 0.00 0.00 2.90
361 362 9.739276 AGGAGAAAATATGAATGACAAGTGTAA 57.261 29.630 0.00 0.00 0.00 2.41
372 373 9.513906 TGAATGACAAGTGTAATTTAGAATCCA 57.486 29.630 0.00 0.00 29.39 3.41
373 374 9.994432 GAATGACAAGTGTAATTTAGAATCCAG 57.006 33.333 0.00 0.00 29.39 3.86
374 375 7.921786 TGACAAGTGTAATTTAGAATCCAGG 57.078 36.000 0.00 0.00 0.00 4.45
375 376 7.458397 TGACAAGTGTAATTTAGAATCCAGGT 58.542 34.615 0.00 0.00 0.00 4.00
376 377 7.942341 TGACAAGTGTAATTTAGAATCCAGGTT 59.058 33.333 0.00 0.00 0.00 3.50
377 378 8.110860 ACAAGTGTAATTTAGAATCCAGGTTG 57.889 34.615 0.00 0.00 0.00 3.77
378 379 7.942341 ACAAGTGTAATTTAGAATCCAGGTTGA 59.058 33.333 0.00 0.00 0.00 3.18
379 380 8.792633 CAAGTGTAATTTAGAATCCAGGTTGAA 58.207 33.333 0.00 0.00 0.00 2.69
380 381 8.567285 AGTGTAATTTAGAATCCAGGTTGAAG 57.433 34.615 0.00 0.00 0.00 3.02
381 382 7.611855 AGTGTAATTTAGAATCCAGGTTGAAGG 59.388 37.037 0.00 0.00 0.00 3.46
382 383 7.393515 GTGTAATTTAGAATCCAGGTTGAAGGT 59.606 37.037 0.00 0.00 0.00 3.50
383 384 8.607713 TGTAATTTAGAATCCAGGTTGAAGGTA 58.392 33.333 0.00 0.00 0.00 3.08
384 385 9.110502 GTAATTTAGAATCCAGGTTGAAGGTAG 57.889 37.037 0.00 0.00 0.00 3.18
385 386 6.945636 TTTAGAATCCAGGTTGAAGGTAGA 57.054 37.500 0.00 0.00 0.00 2.59
386 387 7.510675 TTTAGAATCCAGGTTGAAGGTAGAT 57.489 36.000 0.00 0.00 0.00 1.98
387 388 5.622346 AGAATCCAGGTTGAAGGTAGATC 57.378 43.478 0.00 0.00 0.00 2.75
388 389 5.032846 AGAATCCAGGTTGAAGGTAGATCA 58.967 41.667 0.00 0.00 0.00 2.92
389 390 5.669447 AGAATCCAGGTTGAAGGTAGATCAT 59.331 40.000 0.00 0.00 0.00 2.45
390 391 4.760530 TCCAGGTTGAAGGTAGATCATG 57.239 45.455 0.00 0.00 0.00 3.07
391 392 4.361783 TCCAGGTTGAAGGTAGATCATGA 58.638 43.478 0.00 0.00 0.00 3.07
392 393 4.162320 TCCAGGTTGAAGGTAGATCATGAC 59.838 45.833 0.00 0.00 0.00 3.06
393 394 4.163078 CCAGGTTGAAGGTAGATCATGACT 59.837 45.833 0.00 0.00 0.00 3.41
394 395 5.363868 CCAGGTTGAAGGTAGATCATGACTA 59.636 44.000 0.00 0.00 0.00 2.59
395 396 6.276847 CAGGTTGAAGGTAGATCATGACTAC 58.723 44.000 19.14 19.14 39.32 2.73
396 397 6.097554 CAGGTTGAAGGTAGATCATGACTACT 59.902 42.308 23.10 15.26 39.77 2.57
397 398 6.322712 AGGTTGAAGGTAGATCATGACTACTC 59.677 42.308 23.10 17.67 39.77 2.59
398 399 6.461788 GGTTGAAGGTAGATCATGACTACTCC 60.462 46.154 23.10 14.35 39.77 3.85
399 400 5.141182 TGAAGGTAGATCATGACTACTCCC 58.859 45.833 23.10 13.79 39.77 4.30
400 401 4.816048 AGGTAGATCATGACTACTCCCA 57.184 45.455 23.10 0.74 39.77 4.37
401 402 4.475345 AGGTAGATCATGACTACTCCCAC 58.525 47.826 23.10 13.19 39.77 4.61
402 403 3.574826 GGTAGATCATGACTACTCCCACC 59.425 52.174 23.10 13.56 39.77 4.61
403 404 3.697190 AGATCATGACTACTCCCACCT 57.303 47.619 0.00 0.00 0.00 4.00
404 405 4.000928 AGATCATGACTACTCCCACCTT 57.999 45.455 0.00 0.00 0.00 3.50
405 406 4.366267 AGATCATGACTACTCCCACCTTT 58.634 43.478 0.00 0.00 0.00 3.11
406 407 4.407296 AGATCATGACTACTCCCACCTTTC 59.593 45.833 0.00 0.00 0.00 2.62
407 408 3.516586 TCATGACTACTCCCACCTTTCA 58.483 45.455 0.00 0.00 0.00 2.69
408 409 3.260884 TCATGACTACTCCCACCTTTCAC 59.739 47.826 0.00 0.00 0.00 3.18
409 410 2.972348 TGACTACTCCCACCTTTCACT 58.028 47.619 0.00 0.00 0.00 3.41
410 411 4.122337 TGACTACTCCCACCTTTCACTA 57.878 45.455 0.00 0.00 0.00 2.74
411 412 4.684724 TGACTACTCCCACCTTTCACTAT 58.315 43.478 0.00 0.00 0.00 2.12
412 413 5.091552 TGACTACTCCCACCTTTCACTATT 58.908 41.667 0.00 0.00 0.00 1.73
413 414 5.546499 TGACTACTCCCACCTTTCACTATTT 59.454 40.000 0.00 0.00 0.00 1.40
414 415 6.043938 TGACTACTCCCACCTTTCACTATTTT 59.956 38.462 0.00 0.00 0.00 1.82
415 416 7.236019 TGACTACTCCCACCTTTCACTATTTTA 59.764 37.037 0.00 0.00 0.00 1.52
416 417 7.981142 ACTACTCCCACCTTTCACTATTTTAA 58.019 34.615 0.00 0.00 0.00 1.52
417 418 8.101419 ACTACTCCCACCTTTCACTATTTTAAG 58.899 37.037 0.00 0.00 0.00 1.85
418 419 7.086685 ACTCCCACCTTTCACTATTTTAAGA 57.913 36.000 0.00 0.00 0.00 2.10
419 420 7.699878 ACTCCCACCTTTCACTATTTTAAGAT 58.300 34.615 0.00 0.00 0.00 2.40
420 421 8.832735 ACTCCCACCTTTCACTATTTTAAGATA 58.167 33.333 0.00 0.00 0.00 1.98
421 422 9.853177 CTCCCACCTTTCACTATTTTAAGATAT 57.147 33.333 0.00 0.00 0.00 1.63
476 477 8.776680 AGACACGTTTTAATGTATTTGTTCAC 57.223 30.769 0.00 0.00 0.00 3.18
477 478 8.617809 AGACACGTTTTAATGTATTTGTTCACT 58.382 29.630 0.00 0.00 0.00 3.41
478 479 8.776680 ACACGTTTTAATGTATTTGTTCACTC 57.223 30.769 0.00 0.00 0.00 3.51
479 480 8.399425 ACACGTTTTAATGTATTTGTTCACTCA 58.601 29.630 0.00 0.00 0.00 3.41
480 481 9.393249 CACGTTTTAATGTATTTGTTCACTCAT 57.607 29.630 0.00 0.00 0.00 2.90
481 482 9.959749 ACGTTTTAATGTATTTGTTCACTCATT 57.040 25.926 0.00 0.00 0.00 2.57
488 489 9.683069 AATGTATTTGTTCACTCATTTCAGTTC 57.317 29.630 0.00 0.00 0.00 3.01
489 490 7.351981 TGTATTTGTTCACTCATTTCAGTTCG 58.648 34.615 0.00 0.00 0.00 3.95
490 491 5.811399 TTTGTTCACTCATTTCAGTTCGT 57.189 34.783 0.00 0.00 0.00 3.85
491 492 6.912203 TTTGTTCACTCATTTCAGTTCGTA 57.088 33.333 0.00 0.00 0.00 3.43
492 493 7.490962 TTTGTTCACTCATTTCAGTTCGTAT 57.509 32.000 0.00 0.00 0.00 3.06
493 494 6.466308 TGTTCACTCATTTCAGTTCGTATG 57.534 37.500 0.00 0.00 0.00 2.39
494 495 5.989168 TGTTCACTCATTTCAGTTCGTATGT 59.011 36.000 0.00 0.00 0.00 2.29
495 496 6.073819 TGTTCACTCATTTCAGTTCGTATGTG 60.074 38.462 0.00 0.00 0.00 3.21
496 497 4.929211 TCACTCATTTCAGTTCGTATGTGG 59.071 41.667 0.00 0.00 0.00 4.17
497 498 4.690748 CACTCATTTCAGTTCGTATGTGGT 59.309 41.667 0.00 0.00 0.00 4.16
498 499 5.179368 CACTCATTTCAGTTCGTATGTGGTT 59.821 40.000 0.00 0.00 0.00 3.67
499 500 5.408604 ACTCATTTCAGTTCGTATGTGGTTC 59.591 40.000 0.00 0.00 0.00 3.62
500 501 5.301555 TCATTTCAGTTCGTATGTGGTTCA 58.698 37.500 0.00 0.00 0.00 3.18
501 502 5.937540 TCATTTCAGTTCGTATGTGGTTCAT 59.062 36.000 0.00 0.00 40.25 2.57
502 503 7.100409 TCATTTCAGTTCGTATGTGGTTCATA 58.900 34.615 0.00 0.00 37.91 2.15
503 504 7.768582 TCATTTCAGTTCGTATGTGGTTCATAT 59.231 33.333 0.00 0.00 40.54 1.78
504 505 7.915293 TTTCAGTTCGTATGTGGTTCATATT 57.085 32.000 0.00 0.00 40.54 1.28
505 506 9.607988 ATTTCAGTTCGTATGTGGTTCATATTA 57.392 29.630 0.00 0.00 40.54 0.98
506 507 9.438228 TTTCAGTTCGTATGTGGTTCATATTAA 57.562 29.630 0.00 0.00 40.54 1.40
507 508 9.438228 TTCAGTTCGTATGTGGTTCATATTAAA 57.562 29.630 0.00 0.00 40.54 1.52
508 509 9.438228 TCAGTTCGTATGTGGTTCATATTAAAA 57.562 29.630 0.00 0.00 40.54 1.52
528 529 9.832445 ATTAAAATATCTAAAGCGTCTGAAGGA 57.168 29.630 0.00 0.00 0.00 3.36
529 530 7.778470 AAAATATCTAAAGCGTCTGAAGGAG 57.222 36.000 0.00 0.00 0.00 3.69
530 531 6.472686 AATATCTAAAGCGTCTGAAGGAGT 57.527 37.500 0.00 0.00 0.00 3.85
531 532 7.584122 AATATCTAAAGCGTCTGAAGGAGTA 57.416 36.000 0.00 0.00 0.00 2.59
532 533 7.768807 ATATCTAAAGCGTCTGAAGGAGTAT 57.231 36.000 0.00 0.00 0.00 2.12
533 534 8.865420 ATATCTAAAGCGTCTGAAGGAGTATA 57.135 34.615 0.00 0.00 0.00 1.47
534 535 6.374565 TCTAAAGCGTCTGAAGGAGTATAC 57.625 41.667 0.00 0.00 0.00 1.47
535 536 6.120905 TCTAAAGCGTCTGAAGGAGTATACT 58.879 40.000 4.68 4.68 0.00 2.12
536 537 7.278135 TCTAAAGCGTCTGAAGGAGTATACTA 58.722 38.462 5.09 0.00 0.00 1.82
537 538 5.754543 AAGCGTCTGAAGGAGTATACTAC 57.245 43.478 7.05 7.05 0.00 2.73
538 539 4.778579 AGCGTCTGAAGGAGTATACTACA 58.221 43.478 17.56 9.04 0.00 2.74
539 540 4.575645 AGCGTCTGAAGGAGTATACTACAC 59.424 45.833 17.56 10.91 0.00 2.90
540 541 4.552378 GCGTCTGAAGGAGTATACTACACG 60.552 50.000 17.56 17.02 0.00 4.49
541 542 4.569966 CGTCTGAAGGAGTATACTACACGT 59.430 45.833 17.56 1.86 0.00 4.49
542 543 5.502058 CGTCTGAAGGAGTATACTACACGTG 60.502 48.000 17.56 15.48 0.00 4.49
543 544 4.880120 TCTGAAGGAGTATACTACACGTGG 59.120 45.833 21.57 5.28 0.00 4.94
544 545 3.949754 TGAAGGAGTATACTACACGTGGG 59.050 47.826 21.57 14.41 0.00 4.61
545 546 3.939740 AGGAGTATACTACACGTGGGA 57.060 47.619 21.57 6.36 0.00 4.37
546 547 4.450305 AGGAGTATACTACACGTGGGAT 57.550 45.455 21.57 7.65 0.00 3.85
547 548 4.801164 AGGAGTATACTACACGTGGGATT 58.199 43.478 21.57 4.19 0.00 3.01
548 549 5.206587 AGGAGTATACTACACGTGGGATTT 58.793 41.667 21.57 0.00 0.00 2.17
549 550 5.301298 AGGAGTATACTACACGTGGGATTTC 59.699 44.000 21.57 6.59 0.00 2.17
550 551 5.508657 GGAGTATACTACACGTGGGATTTCC 60.509 48.000 21.57 11.38 0.00 3.13
551 552 5.206587 AGTATACTACACGTGGGATTTCCT 58.793 41.667 21.57 5.12 36.20 3.36
552 553 5.659971 AGTATACTACACGTGGGATTTCCTT 59.340 40.000 21.57 0.00 36.20 3.36
553 554 3.782656 ACTACACGTGGGATTTCCTTT 57.217 42.857 21.57 0.00 36.20 3.11
554 555 4.094830 ACTACACGTGGGATTTCCTTTT 57.905 40.909 21.57 0.00 36.20 2.27
555 556 4.466827 ACTACACGTGGGATTTCCTTTTT 58.533 39.130 21.57 0.00 36.20 1.94
556 557 4.517832 ACTACACGTGGGATTTCCTTTTTC 59.482 41.667 21.57 0.00 36.20 2.29
557 558 2.292292 ACACGTGGGATTTCCTTTTTCG 59.708 45.455 21.57 0.00 36.20 3.46
558 559 2.292292 CACGTGGGATTTCCTTTTTCGT 59.708 45.455 7.95 0.00 36.20 3.85
559 560 2.292292 ACGTGGGATTTCCTTTTTCGTG 59.708 45.455 0.00 0.00 36.20 4.35
560 561 2.351350 CGTGGGATTTCCTTTTTCGTGG 60.351 50.000 0.00 0.00 36.20 4.94
561 562 2.029380 GTGGGATTTCCTTTTTCGTGGG 60.029 50.000 0.00 0.00 36.20 4.61
562 563 2.158445 TGGGATTTCCTTTTTCGTGGGA 60.158 45.455 0.00 0.00 36.20 4.37
563 564 2.894765 GGGATTTCCTTTTTCGTGGGAA 59.105 45.455 0.00 0.00 37.35 3.97
564 565 3.056821 GGGATTTCCTTTTTCGTGGGAAG 60.057 47.826 0.00 0.00 39.79 3.46
565 566 3.056821 GGATTTCCTTTTTCGTGGGAAGG 60.057 47.826 0.00 0.00 39.79 3.46
566 567 2.740506 TTCCTTTTTCGTGGGAAGGT 57.259 45.000 0.00 0.00 40.60 3.50
567 568 2.265589 TCCTTTTTCGTGGGAAGGTC 57.734 50.000 0.00 0.00 40.60 3.85
568 569 1.772453 TCCTTTTTCGTGGGAAGGTCT 59.228 47.619 0.00 0.00 40.60 3.85
569 570 2.152016 CCTTTTTCGTGGGAAGGTCTC 58.848 52.381 0.00 0.00 36.13 3.36
570 571 2.224548 CCTTTTTCGTGGGAAGGTCTCT 60.225 50.000 0.00 0.00 36.13 3.10
571 572 3.477530 CTTTTTCGTGGGAAGGTCTCTT 58.522 45.455 0.00 0.00 32.80 2.85
572 573 2.543777 TTTCGTGGGAAGGTCTCTTG 57.456 50.000 0.00 0.00 32.80 3.02
573 574 1.420430 TTCGTGGGAAGGTCTCTTGT 58.580 50.000 0.00 0.00 32.52 3.16
574 575 0.679505 TCGTGGGAAGGTCTCTTGTG 59.320 55.000 0.00 0.00 32.52 3.33
575 576 0.951040 CGTGGGAAGGTCTCTTGTGC 60.951 60.000 0.00 0.00 32.52 4.57
576 577 0.398318 GTGGGAAGGTCTCTTGTGCT 59.602 55.000 0.00 0.00 32.52 4.40
577 578 1.623811 GTGGGAAGGTCTCTTGTGCTA 59.376 52.381 0.00 0.00 32.52 3.49
578 579 1.902508 TGGGAAGGTCTCTTGTGCTAG 59.097 52.381 0.00 0.00 32.52 3.42
579 580 2.180276 GGGAAGGTCTCTTGTGCTAGA 58.820 52.381 0.00 0.00 32.52 2.43
580 581 2.769095 GGGAAGGTCTCTTGTGCTAGAT 59.231 50.000 0.00 0.00 32.52 1.98
581 582 3.431486 GGGAAGGTCTCTTGTGCTAGATG 60.431 52.174 0.00 0.00 32.52 2.90
582 583 3.449018 GGAAGGTCTCTTGTGCTAGATGA 59.551 47.826 0.00 0.00 32.52 2.92
583 584 4.441356 GGAAGGTCTCTTGTGCTAGATGAG 60.441 50.000 0.00 0.00 32.52 2.90
584 585 4.973317 GAAGGTCTCTTGTGCTAGATGAGC 60.973 50.000 0.00 0.00 41.72 4.26
585 586 7.911266 GAAGGTCTCTTGTGCTAGATGAGCC 62.911 52.000 0.00 0.00 41.11 4.70
597 598 2.653234 GATGAGCCCATCCATGACTT 57.347 50.000 0.00 0.00 42.55 3.01
598 599 2.941480 GATGAGCCCATCCATGACTTT 58.059 47.619 0.00 0.00 42.55 2.66
599 600 2.133281 TGAGCCCATCCATGACTTTG 57.867 50.000 0.00 0.00 0.00 2.77
600 601 1.355381 TGAGCCCATCCATGACTTTGT 59.645 47.619 0.00 0.00 0.00 2.83
601 602 2.575735 TGAGCCCATCCATGACTTTGTA 59.424 45.455 0.00 0.00 0.00 2.41
602 603 3.209410 GAGCCCATCCATGACTTTGTAG 58.791 50.000 0.00 0.00 0.00 2.74
603 604 2.578021 AGCCCATCCATGACTTTGTAGT 59.422 45.455 0.00 0.00 37.31 2.73
604 605 3.780294 AGCCCATCCATGACTTTGTAGTA 59.220 43.478 0.00 0.00 33.84 1.82
605 606 4.130118 GCCCATCCATGACTTTGTAGTAG 58.870 47.826 0.00 0.00 33.84 2.57
606 607 4.384208 GCCCATCCATGACTTTGTAGTAGT 60.384 45.833 0.00 0.00 33.84 2.73
607 608 5.360591 CCCATCCATGACTTTGTAGTAGTC 58.639 45.833 0.00 0.00 41.86 2.59
608 609 5.043903 CCATCCATGACTTTGTAGTAGTCG 58.956 45.833 0.00 0.00 43.90 4.18
609 610 5.163550 CCATCCATGACTTTGTAGTAGTCGA 60.164 44.000 0.00 0.00 43.90 4.20
610 611 5.306532 TCCATGACTTTGTAGTAGTCGAC 57.693 43.478 7.70 7.70 43.90 4.20
611 612 4.096311 CCATGACTTTGTAGTAGTCGACG 58.904 47.826 10.46 0.00 43.90 5.12
612 613 4.142752 CCATGACTTTGTAGTAGTCGACGA 60.143 45.833 10.46 0.94 43.90 4.20
613 614 4.658713 TGACTTTGTAGTAGTCGACGAG 57.341 45.455 10.46 2.40 43.90 4.18
614 615 4.309933 TGACTTTGTAGTAGTCGACGAGA 58.690 43.478 10.46 0.00 43.90 4.04
615 616 4.388165 TGACTTTGTAGTAGTCGACGAGAG 59.612 45.833 10.46 3.90 43.90 3.20
616 617 3.124976 ACTTTGTAGTAGTCGACGAGAGC 59.875 47.826 10.46 2.84 31.21 4.09
617 618 2.375173 TGTAGTAGTCGACGAGAGCA 57.625 50.000 10.46 5.54 0.00 4.26
618 619 2.902523 TGTAGTAGTCGACGAGAGCAT 58.097 47.619 10.46 0.00 0.00 3.79
619 620 2.608090 TGTAGTAGTCGACGAGAGCATG 59.392 50.000 10.46 0.00 0.00 4.06
620 621 0.378962 AGTAGTCGACGAGAGCATGC 59.621 55.000 10.51 10.51 0.00 4.06
621 622 0.098905 GTAGTCGACGAGAGCATGCA 59.901 55.000 21.98 0.00 0.00 3.96
622 623 1.025041 TAGTCGACGAGAGCATGCAT 58.975 50.000 21.98 7.95 0.00 3.96
623 624 1.025041 AGTCGACGAGAGCATGCATA 58.975 50.000 21.98 0.00 0.00 3.14
624 625 1.611006 AGTCGACGAGAGCATGCATAT 59.389 47.619 21.98 4.53 0.00 1.78
625 626 2.035193 AGTCGACGAGAGCATGCATATT 59.965 45.455 21.98 0.00 0.00 1.28
626 627 3.253432 AGTCGACGAGAGCATGCATATTA 59.747 43.478 21.98 0.00 0.00 0.98
627 628 3.605916 GTCGACGAGAGCATGCATATTAG 59.394 47.826 21.98 8.32 0.00 1.73
628 629 3.253432 TCGACGAGAGCATGCATATTAGT 59.747 43.478 21.98 11.59 0.00 2.24
629 630 3.605916 CGACGAGAGCATGCATATTAGTC 59.394 47.826 21.98 18.14 0.00 2.59
630 631 3.569548 ACGAGAGCATGCATATTAGTCG 58.430 45.455 21.98 17.26 0.00 4.18
631 632 3.253432 ACGAGAGCATGCATATTAGTCGA 59.747 43.478 21.98 0.00 0.00 4.20
632 633 4.082517 ACGAGAGCATGCATATTAGTCGAT 60.083 41.667 21.98 0.00 0.00 3.59
633 634 4.264849 CGAGAGCATGCATATTAGTCGATG 59.735 45.833 21.98 0.00 0.00 3.84
703 704 9.905713 AGCATCTAGGATTTTGACTATGTTTTA 57.094 29.630 0.00 0.00 0.00 1.52
748 749 1.344114 GCTGCCAAAAAGTTCCCATCA 59.656 47.619 0.00 0.00 0.00 3.07
768 769 0.658897 TCGTCTTTTTCGTTGCCCAC 59.341 50.000 0.00 0.00 0.00 4.61
778 779 0.521291 CGTTGCCCACTACACCAATG 59.479 55.000 0.00 0.00 0.00 2.82
810 823 5.119279 GTCATATATGTCCTCGTGCATGAAC 59.881 44.000 10.41 6.93 0.00 3.18
865 880 6.037391 CCAATCAAATCAAATGTACCAATGGC 59.963 38.462 0.00 0.00 0.00 4.40
888 903 0.464373 ATATGTGCCCGGCTGTTCAG 60.464 55.000 11.61 0.00 0.00 3.02
897 912 1.544825 CGGCTGTTCAGGGAAGAGGA 61.545 60.000 5.45 0.00 34.18 3.71
910 925 0.250770 AAGAGGAACCCAACCGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
991 1012 4.144727 TCCTCCTCCTCCTCGCCC 62.145 72.222 0.00 0.00 0.00 6.13
1041 1062 1.889530 AAGACTGCCACCCTAGCGAC 61.890 60.000 0.00 0.00 0.00 5.19
1056 1077 3.793144 GACAAGGCCGCGCTTCTG 61.793 66.667 5.56 0.00 0.00 3.02
1098 1119 1.260538 ATCAGAGCCACTTCGCCTCA 61.261 55.000 0.00 0.00 0.00 3.86
1171 1192 2.415608 GGTCGCGTCATCTCCCTCA 61.416 63.158 5.77 0.00 0.00 3.86
1321 1342 1.260538 ATCCAAGCTCACCTCGCTCA 61.261 55.000 0.00 0.00 36.56 4.26
1327 1348 1.226802 CTCACCTCGCTCACCATCG 60.227 63.158 0.00 0.00 0.00 3.84
1336 1357 0.872021 GCTCACCATCGCTCTTACCG 60.872 60.000 0.00 0.00 0.00 4.02
1400 1421 2.224646 GGCTCAAAGAACTCACCCTCTT 60.225 50.000 0.00 0.00 33.25 2.85
1458 1479 1.421480 GGGGCCTCCGTTACTTAGAT 58.579 55.000 0.84 0.00 0.00 1.98
1467 1488 5.434352 TCCGTTACTTAGATTCCATCGAG 57.566 43.478 0.00 0.00 0.00 4.04
1629 1656 1.734477 CTCCCACAACGCTCTCACG 60.734 63.158 0.00 0.00 39.50 4.35
1665 1692 3.118186 TGTTCTTCGGAAGGACAAAGGAA 60.118 43.478 25.80 5.12 43.91 3.36
1877 1904 1.593265 CCTTGGCAAGGTTGGATGC 59.407 57.895 33.43 0.00 43.95 3.91
1883 1910 1.098050 GCAAGGTTGGATGCCTACAG 58.902 55.000 0.00 0.00 36.56 2.74
1891 1918 1.227674 GATGCCTACAGCTTCCGGG 60.228 63.158 0.00 0.00 44.23 5.73
1892 1919 2.666596 GATGCCTACAGCTTCCGGGG 62.667 65.000 0.00 0.00 44.23 5.73
2038 2065 6.480981 GCTGAAATAAAGCCAAATGCATATGT 59.519 34.615 0.00 0.00 44.83 2.29
2044 2071 6.913873 AAAGCCAAATGCATATGTGATTTC 57.086 33.333 0.00 0.22 44.83 2.17
2046 2073 5.353938 AGCCAAATGCATATGTGATTTCAC 58.646 37.500 0.00 3.72 44.42 3.18
2089 2116 7.254252 CCGTCTATTTATCTTTGAACTCTGCTG 60.254 40.741 0.00 0.00 0.00 4.41
2127 2213 7.912056 TTTGTTGAGATAAGAATGGAGTCTG 57.088 36.000 0.00 0.00 0.00 3.51
2131 2217 7.821359 TGTTGAGATAAGAATGGAGTCTGAAAG 59.179 37.037 0.00 0.00 0.00 2.62
2132 2218 7.487822 TGAGATAAGAATGGAGTCTGAAAGT 57.512 36.000 0.00 0.00 33.76 2.66
2133 2219 7.911651 TGAGATAAGAATGGAGTCTGAAAGTT 58.088 34.615 0.00 0.00 33.76 2.66
2134 2220 7.821359 TGAGATAAGAATGGAGTCTGAAAGTTG 59.179 37.037 0.00 0.00 33.76 3.16
2135 2221 7.684529 AGATAAGAATGGAGTCTGAAAGTTGT 58.315 34.615 0.00 0.00 33.76 3.32
2136 2222 8.816894 AGATAAGAATGGAGTCTGAAAGTTGTA 58.183 33.333 0.00 0.00 33.76 2.41
2137 2223 9.092876 GATAAGAATGGAGTCTGAAAGTTGTAG 57.907 37.037 0.00 0.00 33.76 2.74
2138 2224 6.672266 AGAATGGAGTCTGAAAGTTGTAGA 57.328 37.500 0.00 0.00 33.76 2.59
2139 2225 6.696411 AGAATGGAGTCTGAAAGTTGTAGAG 58.304 40.000 0.00 0.00 33.76 2.43
2140 2226 6.495181 AGAATGGAGTCTGAAAGTTGTAGAGA 59.505 38.462 0.00 0.00 33.76 3.10
2141 2227 5.455056 TGGAGTCTGAAAGTTGTAGAGAC 57.545 43.478 0.00 0.00 34.47 3.36
2142 2228 4.281182 TGGAGTCTGAAAGTTGTAGAGACC 59.719 45.833 0.00 0.00 34.75 3.85
2143 2229 4.477780 GAGTCTGAAAGTTGTAGAGACCG 58.522 47.826 0.00 0.00 34.75 4.79
2144 2230 4.142790 AGTCTGAAAGTTGTAGAGACCGA 58.857 43.478 0.00 0.00 34.75 4.69
2145 2231 4.023021 AGTCTGAAAGTTGTAGAGACCGAC 60.023 45.833 0.00 0.00 34.75 4.79
2146 2232 3.058432 TCTGAAAGTTGTAGAGACCGACG 60.058 47.826 0.00 0.00 33.76 5.12
2147 2233 1.984297 GAAAGTTGTAGAGACCGACGC 59.016 52.381 0.00 0.00 0.00 5.19
2148 2234 0.956633 AAGTTGTAGAGACCGACGCA 59.043 50.000 0.00 0.00 0.00 5.24
2149 2235 0.956633 AGTTGTAGAGACCGACGCAA 59.043 50.000 0.00 0.00 0.00 4.85
2150 2236 1.544691 AGTTGTAGAGACCGACGCAAT 59.455 47.619 0.00 0.00 0.00 3.56
2151 2237 2.029290 AGTTGTAGAGACCGACGCAATT 60.029 45.455 0.00 0.00 0.00 2.32
2182 2268 2.367947 AGAAAAGGAGGATGACCCCT 57.632 50.000 0.00 0.00 38.08 4.79
2195 2281 4.559063 CCCCTGGCCTCTGCATCG 62.559 72.222 3.32 0.00 40.13 3.84
2315 2401 6.573094 CGCTACTCCAATCCATATGATGAAGA 60.573 42.308 3.65 0.00 32.68 2.87
2348 2435 2.026262 GCCAAATACCCAGACCTCTCAA 60.026 50.000 0.00 0.00 0.00 3.02
2427 2515 1.816863 AACCAGTCCGACGCACTCAT 61.817 55.000 0.00 0.00 0.00 2.90
2544 2635 1.613836 AACGACGAACTCCACCTACT 58.386 50.000 0.00 0.00 0.00 2.57
2592 2683 2.657355 ATCCATGCTAGGATAGGGCT 57.343 50.000 8.49 0.00 46.41 5.19
2768 2859 0.968901 TCAGTCCATACCGACGCCTT 60.969 55.000 0.00 0.00 37.85 4.35
2792 2883 4.011517 GGGGAACGACGCCCTCAA 62.012 66.667 9.99 0.00 45.30 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.035607 CGTTCATTTTCAACTATAGCAGTAGAT 57.964 33.333 0.00 0.00 36.04 1.98
34 35 8.033038 ACGTTCATTTTCAACTATAGCAGTAGA 58.967 33.333 0.00 0.00 36.04 2.59
35 36 8.110612 CACGTTCATTTTCAACTATAGCAGTAG 58.889 37.037 0.00 0.00 36.04 2.57
36 37 7.601130 ACACGTTCATTTTCAACTATAGCAGTA 59.399 33.333 0.00 0.00 36.04 2.74
37 38 6.426937 ACACGTTCATTTTCAACTATAGCAGT 59.573 34.615 0.00 0.00 40.05 4.40
38 39 6.831769 ACACGTTCATTTTCAACTATAGCAG 58.168 36.000 0.00 0.00 0.00 4.24
39 40 6.795098 ACACGTTCATTTTCAACTATAGCA 57.205 33.333 0.00 0.00 0.00 3.49
243 244 9.595823 GCTAAATGACCTAACTTAGACAACATA 57.404 33.333 0.00 0.00 0.00 2.29
244 245 8.100791 TGCTAAATGACCTAACTTAGACAACAT 58.899 33.333 0.00 0.00 0.00 2.71
245 246 7.446769 TGCTAAATGACCTAACTTAGACAACA 58.553 34.615 0.00 0.00 0.00 3.33
246 247 7.900782 TGCTAAATGACCTAACTTAGACAAC 57.099 36.000 0.00 0.00 0.00 3.32
247 248 8.154856 ACTTGCTAAATGACCTAACTTAGACAA 58.845 33.333 0.00 0.00 0.00 3.18
248 249 7.602644 CACTTGCTAAATGACCTAACTTAGACA 59.397 37.037 0.00 0.00 0.00 3.41
249 250 7.064728 CCACTTGCTAAATGACCTAACTTAGAC 59.935 40.741 0.00 0.00 0.00 2.59
250 251 7.103641 CCACTTGCTAAATGACCTAACTTAGA 58.896 38.462 0.00 0.00 0.00 2.10
251 252 6.879458 ACCACTTGCTAAATGACCTAACTTAG 59.121 38.462 0.00 0.00 0.00 2.18
252 253 6.775708 ACCACTTGCTAAATGACCTAACTTA 58.224 36.000 0.00 0.00 0.00 2.24
253 254 5.631119 ACCACTTGCTAAATGACCTAACTT 58.369 37.500 0.00 0.00 0.00 2.66
254 255 5.242795 ACCACTTGCTAAATGACCTAACT 57.757 39.130 0.00 0.00 0.00 2.24
255 256 5.935789 TGTACCACTTGCTAAATGACCTAAC 59.064 40.000 0.00 0.00 0.00 2.34
256 257 6.116711 TGTACCACTTGCTAAATGACCTAA 57.883 37.500 0.00 0.00 0.00 2.69
257 258 5.730550 CTGTACCACTTGCTAAATGACCTA 58.269 41.667 0.00 0.00 0.00 3.08
258 259 4.579869 CTGTACCACTTGCTAAATGACCT 58.420 43.478 0.00 0.00 0.00 3.85
259 260 3.127030 GCTGTACCACTTGCTAAATGACC 59.873 47.826 0.00 0.00 0.00 4.02
260 261 3.751175 TGCTGTACCACTTGCTAAATGAC 59.249 43.478 0.00 0.00 0.00 3.06
261 262 4.014569 TGCTGTACCACTTGCTAAATGA 57.985 40.909 0.00 0.00 0.00 2.57
262 263 4.764679 TTGCTGTACCACTTGCTAAATG 57.235 40.909 0.00 0.00 0.00 2.32
263 264 5.782893 TTTTGCTGTACCACTTGCTAAAT 57.217 34.783 0.00 0.00 0.00 1.40
264 265 5.068460 ACATTTTGCTGTACCACTTGCTAAA 59.932 36.000 0.00 0.00 35.49 1.85
265 266 4.582656 ACATTTTGCTGTACCACTTGCTAA 59.417 37.500 0.00 0.00 0.00 3.09
266 267 4.141287 ACATTTTGCTGTACCACTTGCTA 58.859 39.130 0.00 0.00 0.00 3.49
267 268 2.958355 ACATTTTGCTGTACCACTTGCT 59.042 40.909 0.00 0.00 0.00 3.91
268 269 3.369546 ACATTTTGCTGTACCACTTGC 57.630 42.857 0.00 0.00 0.00 4.01
269 270 4.023279 TGCTACATTTTGCTGTACCACTTG 60.023 41.667 0.00 0.00 0.00 3.16
270 271 4.141287 TGCTACATTTTGCTGTACCACTT 58.859 39.130 0.00 0.00 0.00 3.16
271 272 3.750371 TGCTACATTTTGCTGTACCACT 58.250 40.909 0.00 0.00 0.00 4.00
272 273 3.751175 TCTGCTACATTTTGCTGTACCAC 59.249 43.478 0.00 0.00 0.00 4.16
273 274 4.014569 TCTGCTACATTTTGCTGTACCA 57.985 40.909 0.00 0.00 0.00 3.25
274 275 6.867662 ATATCTGCTACATTTTGCTGTACC 57.132 37.500 0.00 0.00 0.00 3.34
302 303 9.647918 TCATCTCCTTCAGTGTAATAGTATCTT 57.352 33.333 0.00 0.00 0.00 2.40
303 304 9.073475 GTCATCTCCTTCAGTGTAATAGTATCT 57.927 37.037 0.00 0.00 0.00 1.98
304 305 9.073475 AGTCATCTCCTTCAGTGTAATAGTATC 57.927 37.037 0.00 0.00 0.00 2.24
305 306 9.073475 GAGTCATCTCCTTCAGTGTAATAGTAT 57.927 37.037 0.00 0.00 34.87 2.12
306 307 8.053355 TGAGTCATCTCCTTCAGTGTAATAGTA 58.947 37.037 0.00 0.00 39.75 1.82
307 308 6.892456 TGAGTCATCTCCTTCAGTGTAATAGT 59.108 38.462 0.00 0.00 39.75 2.12
308 309 7.340122 TGAGTCATCTCCTTCAGTGTAATAG 57.660 40.000 0.00 0.00 39.75 1.73
309 310 7.718334 TTGAGTCATCTCCTTCAGTGTAATA 57.282 36.000 0.00 0.00 39.75 0.98
310 311 6.611613 TTGAGTCATCTCCTTCAGTGTAAT 57.388 37.500 0.00 0.00 39.75 1.89
311 312 6.419484 TTTGAGTCATCTCCTTCAGTGTAA 57.581 37.500 0.00 0.00 39.75 2.41
312 313 6.419484 TTTTGAGTCATCTCCTTCAGTGTA 57.581 37.500 0.00 0.00 39.75 2.90
313 314 4.963318 TTTGAGTCATCTCCTTCAGTGT 57.037 40.909 0.00 0.00 39.75 3.55
314 315 4.694509 CCTTTTGAGTCATCTCCTTCAGTG 59.305 45.833 0.00 0.00 39.75 3.66
315 316 4.594920 TCCTTTTGAGTCATCTCCTTCAGT 59.405 41.667 0.00 0.00 39.75 3.41
316 317 5.046735 TCTCCTTTTGAGTCATCTCCTTCAG 60.047 44.000 0.00 0.00 42.12 3.02
317 318 4.840680 TCTCCTTTTGAGTCATCTCCTTCA 59.159 41.667 0.00 0.00 42.12 3.02
318 319 5.413309 TCTCCTTTTGAGTCATCTCCTTC 57.587 43.478 0.00 0.00 42.12 3.46
319 320 5.832539 TTCTCCTTTTGAGTCATCTCCTT 57.167 39.130 0.00 0.00 42.12 3.36
320 321 5.832539 TTTCTCCTTTTGAGTCATCTCCT 57.167 39.130 0.00 0.00 42.12 3.69
321 322 8.619546 CATATTTTCTCCTTTTGAGTCATCTCC 58.380 37.037 0.00 0.00 42.12 3.71
322 323 9.388506 TCATATTTTCTCCTTTTGAGTCATCTC 57.611 33.333 0.00 0.00 42.12 2.75
323 324 9.745018 TTCATATTTTCTCCTTTTGAGTCATCT 57.255 29.630 0.00 0.00 42.12 2.90
326 327 9.519191 TCATTCATATTTTCTCCTTTTGAGTCA 57.481 29.630 0.00 0.00 42.12 3.41
327 328 9.780413 GTCATTCATATTTTCTCCTTTTGAGTC 57.220 33.333 0.00 0.00 42.12 3.36
328 329 9.300681 TGTCATTCATATTTTCTCCTTTTGAGT 57.699 29.630 0.00 0.00 42.12 3.41
331 332 9.918630 ACTTGTCATTCATATTTTCTCCTTTTG 57.081 29.630 0.00 0.00 0.00 2.44
332 333 9.918630 CACTTGTCATTCATATTTTCTCCTTTT 57.081 29.630 0.00 0.00 0.00 2.27
333 334 9.082313 ACACTTGTCATTCATATTTTCTCCTTT 57.918 29.630 0.00 0.00 0.00 3.11
334 335 8.641498 ACACTTGTCATTCATATTTTCTCCTT 57.359 30.769 0.00 0.00 0.00 3.36
335 336 9.739276 TTACACTTGTCATTCATATTTTCTCCT 57.261 29.630 0.00 0.00 0.00 3.69
346 347 9.513906 TGGATTCTAAATTACACTTGTCATTCA 57.486 29.630 0.00 0.00 0.00 2.57
347 348 9.994432 CTGGATTCTAAATTACACTTGTCATTC 57.006 33.333 0.00 0.00 0.00 2.67
348 349 8.960591 CCTGGATTCTAAATTACACTTGTCATT 58.039 33.333 0.00 0.00 0.00 2.57
349 350 8.109634 ACCTGGATTCTAAATTACACTTGTCAT 58.890 33.333 0.00 0.00 0.00 3.06
350 351 7.458397 ACCTGGATTCTAAATTACACTTGTCA 58.542 34.615 0.00 0.00 0.00 3.58
351 352 7.923414 ACCTGGATTCTAAATTACACTTGTC 57.077 36.000 0.00 0.00 0.00 3.18
352 353 7.942341 TCAACCTGGATTCTAAATTACACTTGT 59.058 33.333 0.00 0.00 0.00 3.16
353 354 8.335532 TCAACCTGGATTCTAAATTACACTTG 57.664 34.615 0.00 0.00 0.00 3.16
354 355 8.934023 TTCAACCTGGATTCTAAATTACACTT 57.066 30.769 0.00 0.00 0.00 3.16
355 356 7.611855 CCTTCAACCTGGATTCTAAATTACACT 59.388 37.037 0.00 0.00 0.00 3.55
356 357 7.393515 ACCTTCAACCTGGATTCTAAATTACAC 59.606 37.037 0.00 0.00 0.00 2.90
357 358 7.466804 ACCTTCAACCTGGATTCTAAATTACA 58.533 34.615 0.00 0.00 0.00 2.41
358 359 7.939784 ACCTTCAACCTGGATTCTAAATTAC 57.060 36.000 0.00 0.00 0.00 1.89
359 360 9.053472 TCTACCTTCAACCTGGATTCTAAATTA 57.947 33.333 0.00 0.00 0.00 1.40
360 361 7.928873 TCTACCTTCAACCTGGATTCTAAATT 58.071 34.615 0.00 0.00 0.00 1.82
361 362 7.510675 TCTACCTTCAACCTGGATTCTAAAT 57.489 36.000 0.00 0.00 0.00 1.40
362 363 6.945636 TCTACCTTCAACCTGGATTCTAAA 57.054 37.500 0.00 0.00 0.00 1.85
363 364 6.672218 TGATCTACCTTCAACCTGGATTCTAA 59.328 38.462 0.00 0.00 0.00 2.10
364 365 6.202331 TGATCTACCTTCAACCTGGATTCTA 58.798 40.000 0.00 0.00 0.00 2.10
365 366 5.032846 TGATCTACCTTCAACCTGGATTCT 58.967 41.667 0.00 0.00 0.00 2.40
366 367 5.359194 TGATCTACCTTCAACCTGGATTC 57.641 43.478 0.00 0.00 0.00 2.52
367 368 5.429762 TCATGATCTACCTTCAACCTGGATT 59.570 40.000 0.00 0.00 0.00 3.01
368 369 4.971282 TCATGATCTACCTTCAACCTGGAT 59.029 41.667 0.00 0.00 0.00 3.41
369 370 4.162320 GTCATGATCTACCTTCAACCTGGA 59.838 45.833 0.00 0.00 0.00 3.86
370 371 4.163078 AGTCATGATCTACCTTCAACCTGG 59.837 45.833 0.00 0.00 0.00 4.45
371 372 5.350504 AGTCATGATCTACCTTCAACCTG 57.649 43.478 0.00 0.00 0.00 4.00
372 373 6.198639 AGTAGTCATGATCTACCTTCAACCT 58.801 40.000 21.67 5.68 38.66 3.50
373 374 6.461788 GGAGTAGTCATGATCTACCTTCAACC 60.462 46.154 21.67 15.12 38.66 3.77
374 375 6.461788 GGGAGTAGTCATGATCTACCTTCAAC 60.462 46.154 21.67 12.42 38.66 3.18
375 376 5.598830 GGGAGTAGTCATGATCTACCTTCAA 59.401 44.000 21.67 0.00 38.66 2.69
376 377 5.141182 GGGAGTAGTCATGATCTACCTTCA 58.859 45.833 21.67 0.00 38.66 3.02
377 378 5.010213 GTGGGAGTAGTCATGATCTACCTTC 59.990 48.000 21.67 16.50 38.66 3.46
378 379 4.896482 GTGGGAGTAGTCATGATCTACCTT 59.104 45.833 21.67 11.49 38.66 3.50
379 380 4.475345 GTGGGAGTAGTCATGATCTACCT 58.525 47.826 21.67 14.07 38.66 3.08
380 381 3.574826 GGTGGGAGTAGTCATGATCTACC 59.425 52.174 21.67 18.78 38.66 3.18
381 382 4.475345 AGGTGGGAGTAGTCATGATCTAC 58.525 47.826 19.47 19.47 38.30 2.59
382 383 4.816048 AGGTGGGAGTAGTCATGATCTA 57.184 45.455 0.00 0.00 0.00 1.98
383 384 3.697190 AGGTGGGAGTAGTCATGATCT 57.303 47.619 0.00 0.68 0.00 2.75
384 385 4.162320 TGAAAGGTGGGAGTAGTCATGATC 59.838 45.833 0.00 0.00 0.00 2.92
385 386 4.080863 GTGAAAGGTGGGAGTAGTCATGAT 60.081 45.833 0.00 0.00 0.00 2.45
386 387 3.260884 GTGAAAGGTGGGAGTAGTCATGA 59.739 47.826 0.00 0.00 0.00 3.07
387 388 3.261897 AGTGAAAGGTGGGAGTAGTCATG 59.738 47.826 0.00 0.00 0.00 3.07
388 389 3.521727 AGTGAAAGGTGGGAGTAGTCAT 58.478 45.455 0.00 0.00 0.00 3.06
389 390 2.972348 AGTGAAAGGTGGGAGTAGTCA 58.028 47.619 0.00 0.00 0.00 3.41
390 391 5.678955 AATAGTGAAAGGTGGGAGTAGTC 57.321 43.478 0.00 0.00 0.00 2.59
391 392 6.449830 AAAATAGTGAAAGGTGGGAGTAGT 57.550 37.500 0.00 0.00 0.00 2.73
392 393 8.319146 TCTTAAAATAGTGAAAGGTGGGAGTAG 58.681 37.037 0.00 0.00 0.00 2.57
393 394 8.209802 TCTTAAAATAGTGAAAGGTGGGAGTA 57.790 34.615 0.00 0.00 0.00 2.59
394 395 7.086685 TCTTAAAATAGTGAAAGGTGGGAGT 57.913 36.000 0.00 0.00 0.00 3.85
395 396 9.853177 ATATCTTAAAATAGTGAAAGGTGGGAG 57.147 33.333 0.00 0.00 0.00 4.30
450 451 9.866936 GTGAACAAATACATTAAAACGTGTCTA 57.133 29.630 0.00 0.00 0.00 2.59
451 452 8.617809 AGTGAACAAATACATTAAAACGTGTCT 58.382 29.630 0.00 0.00 0.00 3.41
452 453 8.776680 AGTGAACAAATACATTAAAACGTGTC 57.223 30.769 0.00 0.00 0.00 3.67
453 454 8.399425 TGAGTGAACAAATACATTAAAACGTGT 58.601 29.630 0.00 0.00 0.00 4.49
454 455 8.775220 TGAGTGAACAAATACATTAAAACGTG 57.225 30.769 0.00 0.00 0.00 4.49
455 456 9.959749 AATGAGTGAACAAATACATTAAAACGT 57.040 25.926 0.00 0.00 0.00 3.99
462 463 9.683069 GAACTGAAATGAGTGAACAAATACATT 57.317 29.630 0.00 0.00 0.00 2.71
463 464 8.017373 CGAACTGAAATGAGTGAACAAATACAT 58.983 33.333 0.00 0.00 0.00 2.29
464 465 7.011950 ACGAACTGAAATGAGTGAACAAATACA 59.988 33.333 0.00 0.00 0.00 2.29
465 466 7.352739 ACGAACTGAAATGAGTGAACAAATAC 58.647 34.615 0.00 0.00 0.00 1.89
466 467 7.490962 ACGAACTGAAATGAGTGAACAAATA 57.509 32.000 0.00 0.00 0.00 1.40
467 468 6.377327 ACGAACTGAAATGAGTGAACAAAT 57.623 33.333 0.00 0.00 0.00 2.32
468 469 5.811399 ACGAACTGAAATGAGTGAACAAA 57.189 34.783 0.00 0.00 0.00 2.83
469 470 6.481976 ACATACGAACTGAAATGAGTGAACAA 59.518 34.615 0.00 0.00 0.00 2.83
470 471 5.989168 ACATACGAACTGAAATGAGTGAACA 59.011 36.000 0.00 0.00 0.00 3.18
471 472 6.299604 CACATACGAACTGAAATGAGTGAAC 58.700 40.000 0.00 0.00 0.00 3.18
472 473 5.408299 CCACATACGAACTGAAATGAGTGAA 59.592 40.000 0.00 0.00 0.00 3.18
473 474 4.929211 CCACATACGAACTGAAATGAGTGA 59.071 41.667 0.00 0.00 0.00 3.41
474 475 4.690748 ACCACATACGAACTGAAATGAGTG 59.309 41.667 0.00 0.00 0.00 3.51
475 476 4.894784 ACCACATACGAACTGAAATGAGT 58.105 39.130 0.00 0.00 0.00 3.41
476 477 5.408299 TGAACCACATACGAACTGAAATGAG 59.592 40.000 0.00 0.00 0.00 2.90
477 478 5.301555 TGAACCACATACGAACTGAAATGA 58.698 37.500 0.00 0.00 0.00 2.57
478 479 5.605564 TGAACCACATACGAACTGAAATG 57.394 39.130 0.00 0.00 0.00 2.32
479 480 8.506168 AATATGAACCACATACGAACTGAAAT 57.494 30.769 0.00 0.00 43.12 2.17
480 481 7.915293 AATATGAACCACATACGAACTGAAA 57.085 32.000 0.00 0.00 43.12 2.69
481 482 9.438228 TTTAATATGAACCACATACGAACTGAA 57.562 29.630 0.00 0.00 43.12 3.02
482 483 9.438228 TTTTAATATGAACCACATACGAACTGA 57.562 29.630 0.00 0.00 43.12 3.41
502 503 9.832445 TCCTTCAGACGCTTTAGATATTTTAAT 57.168 29.630 0.00 0.00 0.00 1.40
503 504 9.314321 CTCCTTCAGACGCTTTAGATATTTTAA 57.686 33.333 0.00 0.00 0.00 1.52
504 505 8.475639 ACTCCTTCAGACGCTTTAGATATTTTA 58.524 33.333 0.00 0.00 0.00 1.52
505 506 7.331791 ACTCCTTCAGACGCTTTAGATATTTT 58.668 34.615 0.00 0.00 0.00 1.82
506 507 6.879400 ACTCCTTCAGACGCTTTAGATATTT 58.121 36.000 0.00 0.00 0.00 1.40
507 508 6.472686 ACTCCTTCAGACGCTTTAGATATT 57.527 37.500 0.00 0.00 0.00 1.28
508 509 7.768807 ATACTCCTTCAGACGCTTTAGATAT 57.231 36.000 0.00 0.00 0.00 1.63
509 510 7.937942 AGTATACTCCTTCAGACGCTTTAGATA 59.062 37.037 0.00 0.00 0.00 1.98
510 511 6.773685 AGTATACTCCTTCAGACGCTTTAGAT 59.226 38.462 0.00 0.00 0.00 1.98
511 512 6.120905 AGTATACTCCTTCAGACGCTTTAGA 58.879 40.000 0.00 0.00 0.00 2.10
512 513 6.380095 AGTATACTCCTTCAGACGCTTTAG 57.620 41.667 0.00 0.00 0.00 1.85
513 514 6.825213 TGTAGTATACTCCTTCAGACGCTTTA 59.175 38.462 9.12 0.00 43.54 1.85
514 515 5.651139 TGTAGTATACTCCTTCAGACGCTTT 59.349 40.000 9.12 0.00 43.54 3.51
515 516 5.066246 GTGTAGTATACTCCTTCAGACGCTT 59.934 44.000 9.12 0.00 43.54 4.68
516 517 4.575645 GTGTAGTATACTCCTTCAGACGCT 59.424 45.833 9.12 0.00 43.54 5.07
517 518 4.552378 CGTGTAGTATACTCCTTCAGACGC 60.552 50.000 9.12 5.97 43.54 5.19
518 519 4.569966 ACGTGTAGTATACTCCTTCAGACG 59.430 45.833 16.40 16.40 43.54 4.18
519 520 5.220815 CCACGTGTAGTATACTCCTTCAGAC 60.221 48.000 15.65 0.56 43.54 3.51
520 521 4.880120 CCACGTGTAGTATACTCCTTCAGA 59.120 45.833 15.65 0.00 43.54 3.27
521 522 4.036498 CCCACGTGTAGTATACTCCTTCAG 59.964 50.000 15.65 0.47 43.54 3.02
522 523 3.949754 CCCACGTGTAGTATACTCCTTCA 59.050 47.826 15.65 2.60 43.54 3.02
523 524 4.202441 TCCCACGTGTAGTATACTCCTTC 58.798 47.826 15.65 0.00 43.54 3.46
524 525 4.240881 TCCCACGTGTAGTATACTCCTT 57.759 45.455 15.65 0.00 43.54 3.36
525 526 3.939740 TCCCACGTGTAGTATACTCCT 57.060 47.619 15.65 0.00 43.54 3.69
526 527 5.508657 GGAAATCCCACGTGTAGTATACTCC 60.509 48.000 15.65 0.00 37.40 3.85
527 528 5.301298 AGGAAATCCCACGTGTAGTATACTC 59.699 44.000 15.65 2.17 39.04 2.59
528 529 5.206587 AGGAAATCCCACGTGTAGTATACT 58.793 41.667 15.65 10.87 39.04 2.12
529 530 5.526506 AGGAAATCCCACGTGTAGTATAC 57.473 43.478 15.65 0.00 38.83 1.47
530 531 6.549433 AAAGGAAATCCCACGTGTAGTATA 57.451 37.500 15.65 0.00 37.41 1.47
531 532 5.431179 AAAGGAAATCCCACGTGTAGTAT 57.569 39.130 15.65 0.00 37.41 2.12
532 533 4.895668 AAAGGAAATCCCACGTGTAGTA 57.104 40.909 15.65 0.00 37.41 1.82
533 534 3.782656 AAAGGAAATCCCACGTGTAGT 57.217 42.857 15.65 0.00 37.41 2.73
534 535 4.378046 CGAAAAAGGAAATCCCACGTGTAG 60.378 45.833 15.65 5.60 37.41 2.74
535 536 3.499157 CGAAAAAGGAAATCCCACGTGTA 59.501 43.478 15.65 2.16 37.41 2.90
536 537 2.292292 CGAAAAAGGAAATCCCACGTGT 59.708 45.455 15.65 0.00 37.41 4.49
537 538 2.292292 ACGAAAAAGGAAATCCCACGTG 59.708 45.455 9.08 9.08 37.41 4.49
538 539 2.292292 CACGAAAAAGGAAATCCCACGT 59.708 45.455 0.00 0.00 37.41 4.49
539 540 2.351350 CCACGAAAAAGGAAATCCCACG 60.351 50.000 0.00 0.00 37.41 4.94
540 541 2.029380 CCCACGAAAAAGGAAATCCCAC 60.029 50.000 0.00 0.00 37.41 4.61
541 542 2.158445 TCCCACGAAAAAGGAAATCCCA 60.158 45.455 0.00 0.00 37.41 4.37
542 543 2.521126 TCCCACGAAAAAGGAAATCCC 58.479 47.619 0.00 0.00 36.42 3.85
543 544 3.056821 CCTTCCCACGAAAAAGGAAATCC 60.057 47.826 0.00 0.00 41.78 3.01
544 545 3.572682 ACCTTCCCACGAAAAAGGAAATC 59.427 43.478 14.41 0.00 41.78 2.17
545 546 3.572642 ACCTTCCCACGAAAAAGGAAAT 58.427 40.909 14.41 0.00 41.78 2.17
546 547 2.953648 GACCTTCCCACGAAAAAGGAAA 59.046 45.455 14.41 0.00 41.78 3.13
547 548 2.173996 AGACCTTCCCACGAAAAAGGAA 59.826 45.455 14.41 6.84 41.78 3.36
548 549 1.772453 AGACCTTCCCACGAAAAAGGA 59.228 47.619 14.41 0.00 41.78 3.36
549 550 2.152016 GAGACCTTCCCACGAAAAAGG 58.848 52.381 0.00 0.00 44.23 3.11
550 551 3.127425 AGAGACCTTCCCACGAAAAAG 57.873 47.619 0.00 0.00 0.00 2.27
551 552 3.211045 CAAGAGACCTTCCCACGAAAAA 58.789 45.455 0.00 0.00 0.00 1.94
552 553 2.171870 ACAAGAGACCTTCCCACGAAAA 59.828 45.455 0.00 0.00 0.00 2.29
553 554 1.766496 ACAAGAGACCTTCCCACGAAA 59.234 47.619 0.00 0.00 0.00 3.46
554 555 1.070134 CACAAGAGACCTTCCCACGAA 59.930 52.381 0.00 0.00 0.00 3.85
555 556 0.679505 CACAAGAGACCTTCCCACGA 59.320 55.000 0.00 0.00 0.00 4.35
556 557 0.951040 GCACAAGAGACCTTCCCACG 60.951 60.000 0.00 0.00 0.00 4.94
557 558 0.398318 AGCACAAGAGACCTTCCCAC 59.602 55.000 0.00 0.00 0.00 4.61
558 559 1.902508 CTAGCACAAGAGACCTTCCCA 59.097 52.381 0.00 0.00 0.00 4.37
559 560 2.180276 TCTAGCACAAGAGACCTTCCC 58.820 52.381 0.00 0.00 0.00 3.97
560 561 3.449018 TCATCTAGCACAAGAGACCTTCC 59.551 47.826 0.00 0.00 0.00 3.46
561 562 4.681744 CTCATCTAGCACAAGAGACCTTC 58.318 47.826 0.00 0.00 0.00 3.46
562 563 4.734398 CTCATCTAGCACAAGAGACCTT 57.266 45.455 0.00 0.00 0.00 3.50
575 576 2.905085 AGTCATGGATGGGCTCATCTAG 59.095 50.000 25.43 15.25 46.70 2.43
576 577 2.981921 AGTCATGGATGGGCTCATCTA 58.018 47.619 25.43 20.87 46.70 1.98
577 578 1.817087 AGTCATGGATGGGCTCATCT 58.183 50.000 25.43 4.36 46.70 2.90
578 579 2.621998 CAAAGTCATGGATGGGCTCATC 59.378 50.000 18.86 18.86 46.78 2.92
579 580 2.024655 ACAAAGTCATGGATGGGCTCAT 60.025 45.455 0.00 0.00 36.09 2.90
580 581 1.355381 ACAAAGTCATGGATGGGCTCA 59.645 47.619 0.00 0.00 0.00 4.26
581 582 2.134789 ACAAAGTCATGGATGGGCTC 57.865 50.000 0.00 0.00 0.00 4.70
582 583 2.578021 ACTACAAAGTCATGGATGGGCT 59.422 45.455 0.00 0.00 0.00 5.19
583 584 3.004752 ACTACAAAGTCATGGATGGGC 57.995 47.619 0.00 0.00 0.00 5.36
584 585 5.359194 ACTACTACAAAGTCATGGATGGG 57.641 43.478 0.00 0.00 37.15 4.00
585 586 5.043903 CGACTACTACAAAGTCATGGATGG 58.956 45.833 4.32 0.00 42.91 3.51
586 587 5.744345 GTCGACTACTACAAAGTCATGGATG 59.256 44.000 8.70 0.00 42.91 3.51
587 588 5.448768 CGTCGACTACTACAAAGTCATGGAT 60.449 44.000 14.70 0.00 42.91 3.41
588 589 4.142752 CGTCGACTACTACAAAGTCATGGA 60.143 45.833 14.70 0.00 42.91 3.41
589 590 4.096311 CGTCGACTACTACAAAGTCATGG 58.904 47.826 14.70 0.00 42.91 3.66
590 591 4.966249 TCGTCGACTACTACAAAGTCATG 58.034 43.478 14.70 0.00 42.91 3.07
591 592 4.934001 TCTCGTCGACTACTACAAAGTCAT 59.066 41.667 14.70 0.00 42.91 3.06
592 593 4.309933 TCTCGTCGACTACTACAAAGTCA 58.690 43.478 14.70 0.00 42.91 3.41
593 594 4.724602 GCTCTCGTCGACTACTACAAAGTC 60.725 50.000 14.70 0.00 40.01 3.01
594 595 3.124976 GCTCTCGTCGACTACTACAAAGT 59.875 47.826 14.70 0.00 39.91 2.66
595 596 3.124806 TGCTCTCGTCGACTACTACAAAG 59.875 47.826 14.70 1.21 0.00 2.77
596 597 3.069289 TGCTCTCGTCGACTACTACAAA 58.931 45.455 14.70 0.00 0.00 2.83
597 598 2.691927 TGCTCTCGTCGACTACTACAA 58.308 47.619 14.70 0.00 0.00 2.41
598 599 2.375173 TGCTCTCGTCGACTACTACA 57.625 50.000 14.70 3.71 0.00 2.74
599 600 2.600320 GCATGCTCTCGTCGACTACTAC 60.600 54.545 14.70 0.91 0.00 2.73
600 601 1.598132 GCATGCTCTCGTCGACTACTA 59.402 52.381 14.70 0.00 0.00 1.82
601 602 0.378962 GCATGCTCTCGTCGACTACT 59.621 55.000 14.70 0.00 0.00 2.57
602 603 0.098905 TGCATGCTCTCGTCGACTAC 59.901 55.000 20.33 0.00 0.00 2.73
603 604 1.025041 ATGCATGCTCTCGTCGACTA 58.975 50.000 20.33 0.95 0.00 2.59
604 605 1.025041 TATGCATGCTCTCGTCGACT 58.975 50.000 20.33 0.00 0.00 4.18
605 606 2.057503 ATATGCATGCTCTCGTCGAC 57.942 50.000 20.33 5.18 0.00 4.20
606 607 2.800881 AATATGCATGCTCTCGTCGA 57.199 45.000 20.33 0.00 0.00 4.20
607 608 3.569548 ACTAATATGCATGCTCTCGTCG 58.430 45.455 20.33 4.66 0.00 5.12
608 609 3.605916 CGACTAATATGCATGCTCTCGTC 59.394 47.826 20.33 15.24 0.00 4.20
609 610 3.253432 TCGACTAATATGCATGCTCTCGT 59.747 43.478 20.33 8.32 0.00 4.18
610 611 3.826466 TCGACTAATATGCATGCTCTCG 58.174 45.455 20.33 13.09 0.00 4.04
611 612 4.032672 GCATCGACTAATATGCATGCTCTC 59.967 45.833 20.33 1.99 46.19 3.20
612 613 3.931468 GCATCGACTAATATGCATGCTCT 59.069 43.478 20.33 8.90 46.19 4.09
613 614 4.256140 GCATCGACTAATATGCATGCTC 57.744 45.455 20.33 4.97 46.19 4.26
619 620 4.340263 CATGCATGCATCGACTAATATGC 58.660 43.478 30.07 12.32 46.92 3.14
703 704 2.980233 GCGAGGCAAGCACTGGTT 60.980 61.111 0.00 0.00 34.19 3.67
748 749 1.265905 GTGGGCAACGAAAAAGACGAT 59.734 47.619 0.00 0.00 37.60 3.73
768 769 1.750778 GACCATTGCCCATTGGTGTAG 59.249 52.381 16.91 0.00 42.99 2.74
778 779 4.265073 GAGGACATATATGACCATTGCCC 58.735 47.826 28.32 12.57 43.56 5.36
810 823 0.461870 TGGGAATTCAGTGGCGATCG 60.462 55.000 11.69 11.69 0.00 3.69
865 880 3.262420 GAACAGCCGGGCACATATATAG 58.738 50.000 23.09 1.71 0.00 1.31
888 903 1.002502 CGGTTGGGTTCCTCTTCCC 60.003 63.158 0.00 0.00 43.67 3.97
897 912 1.004918 CTCTCGCTTCGGTTGGGTT 60.005 57.895 0.00 0.00 0.00 4.11
910 925 1.507174 GGAAGTGACCGGTCTCTCG 59.493 63.158 32.95 0.00 32.87 4.04
991 1012 4.899239 GGAGGCCATGACCGCTCG 62.899 72.222 5.01 0.00 33.69 5.03
1056 1077 2.044946 AAGGCGGACTTGATGGCC 60.045 61.111 0.00 0.00 45.91 5.36
1136 1157 3.636043 CGGCGTCGTTGCAAGTGT 61.636 61.111 0.00 0.00 36.28 3.55
1171 1192 3.261897 AGGTTGACATCCACGAAGAAGAT 59.738 43.478 5.36 0.00 0.00 2.40
1321 1342 2.499685 GGCGGTAAGAGCGATGGT 59.500 61.111 1.70 0.00 42.41 3.55
1327 1348 2.450345 CCGAAACGGCGGTAAGAGC 61.450 63.158 13.24 0.00 46.07 4.09
1370 1391 2.173569 AGTTCTTTGAGCCTGGTCAGTT 59.826 45.455 0.00 0.00 0.00 3.16
1379 1400 1.349357 AGAGGGTGAGTTCTTTGAGCC 59.651 52.381 0.00 0.00 0.00 4.70
1400 1421 1.000486 CCGGAGAGGGAGTTGGAGA 60.000 63.158 0.00 0.00 35.97 3.71
1458 1479 3.067106 GTTGTTTCTGAGCTCGATGGAA 58.933 45.455 9.64 8.03 0.00 3.53
1467 1488 3.198068 TGTGAGACTGTTGTTTCTGAGC 58.802 45.455 0.00 0.00 0.00 4.26
1503 1524 3.625649 AGAGTGGATTTGGAGAAGAGC 57.374 47.619 0.00 0.00 0.00 4.09
1575 1602 2.259818 CCGACTGCAGCGAACTCT 59.740 61.111 25.33 1.36 0.00 3.24
1653 1680 2.101415 GCTTTGCAGTTCCTTTGTCCTT 59.899 45.455 0.00 0.00 0.00 3.36
1665 1692 1.610522 GACAGGTCAATGCTTTGCAGT 59.389 47.619 7.44 3.61 43.65 4.40
1866 1893 0.995024 AGCTGTAGGCATCCAACCTT 59.005 50.000 0.00 0.00 44.79 3.50
1877 1904 2.966732 TTGCCCCGGAAGCTGTAGG 61.967 63.158 16.13 1.55 0.00 3.18
1883 1910 2.597510 ACTTGTTGCCCCGGAAGC 60.598 61.111 0.73 6.19 0.00 3.86
2038 2065 7.334421 GGAACAAGAGCTAGTAATGTGAAATCA 59.666 37.037 0.00 0.00 0.00 2.57
2044 2071 4.495422 ACGGAACAAGAGCTAGTAATGTG 58.505 43.478 0.00 0.00 0.00 3.21
2046 2073 5.000012 AGACGGAACAAGAGCTAGTAATG 58.000 43.478 0.00 0.00 0.00 1.90
2047 2074 6.963083 ATAGACGGAACAAGAGCTAGTAAT 57.037 37.500 0.00 0.00 0.00 1.89
2048 2075 6.770746 AATAGACGGAACAAGAGCTAGTAA 57.229 37.500 0.00 0.00 0.00 2.24
2049 2076 6.770746 AAATAGACGGAACAAGAGCTAGTA 57.229 37.500 0.00 0.00 0.00 1.82
2050 2077 5.662674 AAATAGACGGAACAAGAGCTAGT 57.337 39.130 0.00 0.00 0.00 2.57
2051 2078 7.653647 AGATAAATAGACGGAACAAGAGCTAG 58.346 38.462 0.00 0.00 0.00 3.42
2089 2116 1.593933 CAACAAATGTGTGTGCCTTGC 59.406 47.619 0.00 0.00 38.27 4.01
2127 2213 1.984297 GCGTCGGTCTCTACAACTTTC 59.016 52.381 0.00 0.00 0.00 2.62
2131 2217 1.992170 ATTGCGTCGGTCTCTACAAC 58.008 50.000 0.00 0.00 0.00 3.32
2132 2218 2.736144 AATTGCGTCGGTCTCTACAA 57.264 45.000 0.00 0.00 0.00 2.41
2133 2219 2.736144 AAATTGCGTCGGTCTCTACA 57.264 45.000 0.00 0.00 0.00 2.74
2315 2401 0.251742 TATTTGGCCCAGCTTGCACT 60.252 50.000 0.00 0.00 0.00 4.40
2348 2435 4.404715 TCCGCTTTAGATGTTAGGCTTAGT 59.595 41.667 0.00 0.00 0.00 2.24
2412 2500 1.103803 ACATATGAGTGCGTCGGACT 58.896 50.000 20.04 20.04 0.00 3.85
2533 2624 2.696526 TGGACTCAAGTAGGTGGAGT 57.303 50.000 0.00 0.00 44.12 3.85
2544 2635 2.783135 GTTGCTTGGAGATGGACTCAA 58.217 47.619 0.00 0.00 46.54 3.02
2692 2783 3.066203 CGAAAGCCCTAACTTTGTTGTGT 59.934 43.478 0.00 0.00 39.93 3.72
2731 2822 1.368203 TGATCCCCTCACTTCCCCTTA 59.632 52.381 0.00 0.00 0.00 2.69
2768 2859 2.939261 GCGTCGTTCCCCTCCTTGA 61.939 63.158 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.