Multiple sequence alignment - TraesCS7D01G199500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G199500 chr7D 100.000 3090 0 0 1 3090 156524363 156527452 0.000000e+00 5707.0
1 TraesCS7D01G199500 chr7D 86.577 1043 117 12 967 1988 156455204 156456244 0.000000e+00 1129.0
2 TraesCS7D01G199500 chr7D 93.141 277 19 0 2805 3081 591077483 591077207 1.030000e-109 407.0
3 TraesCS7D01G199500 chr7D 92.780 277 20 0 2805 3081 591048205 591047929 4.800000e-108 401.0
4 TraesCS7D01G199500 chr7D 90.690 290 24 1 2804 3090 123414724 123414435 1.740000e-102 383.0
5 TraesCS7D01G199500 chr7D 90.345 290 25 1 2804 3090 413530923 413531212 8.090000e-101 377.0
6 TraesCS7D01G199500 chr7D 80.328 427 55 15 3 419 586749875 586750282 2.330000e-76 296.0
7 TraesCS7D01G199500 chr7D 80.845 355 43 17 3 334 4660372 4660724 3.950000e-64 255.0
8 TraesCS7D01G199500 chr7D 81.402 328 40 6 8 334 39968890 39968583 6.620000e-62 248.0
9 TraesCS7D01G199500 chr7D 84.647 241 22 2 206 434 495331993 495331756 3.100000e-55 226.0
10 TraesCS7D01G199500 chr7D 93.333 90 6 0 872 961 508316732 508316643 1.930000e-27 134.0
11 TraesCS7D01G199500 chr7D 90.000 90 8 1 3 92 100847163 100847075 7.000000e-22 115.0
12 TraesCS7D01G199500 chr7D 88.710 62 4 3 2591 2651 131468405 131468346 4.270000e-09 73.1
13 TraesCS7D01G199500 chr7A 94.644 1867 80 14 956 2804 211412230 211414094 0.000000e+00 2876.0
14 TraesCS7D01G199500 chr7A 90.909 429 18 8 452 874 211411818 211412231 9.680000e-155 556.0
15 TraesCS7D01G199500 chr7B 91.650 1521 109 11 953 2462 118891273 118892786 0.000000e+00 2089.0
16 TraesCS7D01G199500 chr7B 87.987 924 109 2 1065 1987 118821353 118822275 0.000000e+00 1090.0
17 TraesCS7D01G199500 chr7B 97.414 348 7 2 2457 2804 118892868 118893213 2.650000e-165 592.0
18 TraesCS7D01G199500 chr7B 93.069 404 21 5 466 866 118890868 118891267 4.440000e-163 584.0
19 TraesCS7D01G199500 chr7B 84.179 335 48 4 3 334 677773497 677773165 1.380000e-83 320.0
20 TraesCS7D01G199500 chr6B 86.708 805 107 0 1089 1893 117840423 117841227 0.000000e+00 894.0
21 TraesCS7D01G199500 chr6D 86.692 804 107 0 1089 1892 53681330 53680527 0.000000e+00 893.0
22 TraesCS7D01G199500 chr6D 91.007 278 25 0 2804 3081 99246180 99245903 2.910000e-100 375.0
23 TraesCS7D01G199500 chr6D 91.304 92 8 0 873 964 142846397 142846306 3.230000e-25 126.0
24 TraesCS7D01G199500 chr6D 97.826 46 1 0 2591 2636 88875953 88875908 2.550000e-11 80.5
25 TraesCS7D01G199500 chr6D 94.118 51 2 1 2591 2641 122992153 122992202 3.300000e-10 76.8
26 TraesCS7D01G199500 chr6D 93.878 49 1 2 2592 2640 363032593 363032639 4.270000e-09 73.1
27 TraesCS7D01G199500 chrUn 86.584 805 108 0 1089 1893 381573742 381572938 0.000000e+00 889.0
28 TraesCS7D01G199500 chrUn 83.929 336 42 8 3 334 69943874 69944201 8.320000e-81 311.0
29 TraesCS7D01G199500 chr6A 85.945 804 113 0 1089 1892 61408742 61409545 0.000000e+00 859.0
30 TraesCS7D01G199500 chr6A 74.627 335 52 21 3 336 119337850 119338152 1.950000e-22 117.0
31 TraesCS7D01G199500 chr6A 95.652 46 2 0 2591 2636 106930040 106929995 1.190000e-09 75.0
32 TraesCS7D01G199500 chr5A 84.518 872 125 10 1028 1893 635408853 635407986 0.000000e+00 854.0
33 TraesCS7D01G199500 chr1D 92.058 277 18 2 2801 3076 460260062 460260335 1.340000e-103 387.0
34 TraesCS7D01G199500 chr1D 100.000 87 0 0 872 958 392952244 392952158 8.870000e-36 161.0
35 TraesCS7D01G199500 chr1D 80.392 102 10 7 336 435 478397474 478397381 5.530000e-08 69.4
36 TraesCS7D01G199500 chr2D 91.336 277 24 0 2805 3081 318859032 318858756 2.250000e-101 379.0
37 TraesCS7D01G199500 chr2D 91.007 278 25 0 2804 3081 9355899 9356176 2.910000e-100 375.0
38 TraesCS7D01G199500 chr2D 94.118 85 5 0 873 957 253816831 253816747 2.500000e-26 130.0
39 TraesCS7D01G199500 chr2A 90.345 290 25 2 2804 3090 146519856 146520145 8.090000e-101 377.0
40 TraesCS7D01G199500 chr2A 75.150 334 55 18 3 334 677736906 677736599 6.950000e-27 132.0
41 TraesCS7D01G199500 chr2B 79.955 449 60 17 3 434 757508768 757508333 1.390000e-78 303.0
42 TraesCS7D01G199500 chr2B 94.186 86 5 0 872 957 383072152 383072067 6.950000e-27 132.0
43 TraesCS7D01G199500 chr2B 89.286 56 5 1 2595 2650 482732354 482732300 5.530000e-08 69.4
44 TraesCS7D01G199500 chr2B 95.000 40 2 0 397 436 792489330 792489291 2.570000e-06 63.9
45 TraesCS7D01G199500 chr5B 82.759 348 47 6 96 433 697177035 697176691 6.480000e-77 298.0
46 TraesCS7D01G199500 chr5B 86.463 229 26 4 106 334 677643005 677642782 2.380000e-61 246.0
47 TraesCS7D01G199500 chr5B 97.826 46 1 0 2591 2636 479621308 479621353 2.550000e-11 80.5
48 TraesCS7D01G199500 chr1B 82.263 327 56 2 8 334 635939269 635938945 6.520000e-72 281.0
49 TraesCS7D01G199500 chr1B 95.349 43 2 0 11 53 669340325 669340367 5.530000e-08 69.4
50 TraesCS7D01G199500 chr1A 98.837 86 1 0 873 958 586344426 586344511 1.480000e-33 154.0
51 TraesCS7D01G199500 chr3D 97.701 87 2 0 872 958 248538492 248538578 1.920000e-32 150.0
52 TraesCS7D01G199500 chr5D 94.505 91 4 1 872 962 500128678 500128767 4.150000e-29 139.0
53 TraesCS7D01G199500 chr3B 94.118 85 5 0 874 958 71400462 71400378 2.500000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G199500 chr7D 156524363 156527452 3089 False 5707.000000 5707 100.000000 1 3090 1 chr7D.!!$F3 3089
1 TraesCS7D01G199500 chr7D 156455204 156456244 1040 False 1129.000000 1129 86.577000 967 1988 1 chr7D.!!$F2 1021
2 TraesCS7D01G199500 chr7A 211411818 211414094 2276 False 1716.000000 2876 92.776500 452 2804 2 chr7A.!!$F1 2352
3 TraesCS7D01G199500 chr7B 118821353 118822275 922 False 1090.000000 1090 87.987000 1065 1987 1 chr7B.!!$F1 922
4 TraesCS7D01G199500 chr7B 118890868 118893213 2345 False 1088.333333 2089 94.044333 466 2804 3 chr7B.!!$F2 2338
5 TraesCS7D01G199500 chr6B 117840423 117841227 804 False 894.000000 894 86.708000 1089 1893 1 chr6B.!!$F1 804
6 TraesCS7D01G199500 chr6D 53680527 53681330 803 True 893.000000 893 86.692000 1089 1892 1 chr6D.!!$R1 803
7 TraesCS7D01G199500 chrUn 381572938 381573742 804 True 889.000000 889 86.584000 1089 1893 1 chrUn.!!$R1 804
8 TraesCS7D01G199500 chr6A 61408742 61409545 803 False 859.000000 859 85.945000 1089 1892 1 chr6A.!!$F1 803
9 TraesCS7D01G199500 chr5A 635407986 635408853 867 True 854.000000 854 84.518000 1028 1893 1 chr5A.!!$R1 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 890 0.106819 TCAGCTACTACCTCCGTCCC 60.107 60.0 0.0 0.0 0.00 4.46 F
1668 1706 0.195096 ACCCACTTTACCCTGGAGGA 59.805 55.0 0.0 0.0 39.89 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1904 0.970640 TGCCAGGCACGAAGTTAGTA 59.029 50.0 11.22 0.0 41.61 1.82 R
3051 3179 0.605589 GCCCCGTAAGTGTTCTTGCT 60.606 55.0 0.00 0.0 34.84 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.361253 CACGACAAGACCACCAGG 57.639 61.111 0.00 0.00 42.21 4.45
18 19 1.961277 CACGACAAGACCACCAGGC 60.961 63.158 0.00 0.00 39.06 4.85
19 20 2.358737 CGACAAGACCACCAGGCC 60.359 66.667 0.00 0.00 39.06 5.19
20 21 2.034221 GACAAGACCACCAGGCCC 59.966 66.667 0.00 0.00 39.06 5.80
21 22 2.450502 ACAAGACCACCAGGCCCT 60.451 61.111 0.00 0.00 39.06 5.19
22 23 2.352805 CAAGACCACCAGGCCCTC 59.647 66.667 0.00 0.00 39.06 4.30
23 24 2.936032 AAGACCACCAGGCCCTCC 60.936 66.667 0.00 0.00 39.06 4.30
24 25 3.810687 AAGACCACCAGGCCCTCCA 62.811 63.158 0.00 0.00 39.06 3.86
25 26 4.035102 GACCACCAGGCCCTCCAC 62.035 72.222 0.00 0.00 39.06 4.02
46 47 3.267860 GCCGCTGCCGATCTGAAG 61.268 66.667 0.00 0.00 36.29 3.02
47 48 2.587194 CCGCTGCCGATCTGAAGG 60.587 66.667 0.00 0.00 36.29 3.46
64 65 4.465512 GCAGATTGTGCGCCACCG 62.466 66.667 4.18 0.00 43.99 4.94
153 154 4.429212 CCACGTCGCCGTCCATGA 62.429 66.667 0.00 0.00 46.28 3.07
154 155 3.179265 CACGTCGCCGTCCATGAC 61.179 66.667 0.00 0.00 46.28 3.06
155 156 3.371063 ACGTCGCCGTCCATGACT 61.371 61.111 0.00 0.00 46.28 3.41
156 157 2.126071 CGTCGCCGTCCATGACTT 60.126 61.111 0.00 0.00 0.00 3.01
157 158 2.444624 CGTCGCCGTCCATGACTTG 61.445 63.158 0.00 0.00 0.00 3.16
159 160 3.499737 CGCCGTCCATGACTTGGC 61.500 66.667 2.42 0.90 46.01 4.52
160 161 3.134127 GCCGTCCATGACTTGGCC 61.134 66.667 0.00 0.00 46.01 5.36
161 162 2.819595 CCGTCCATGACTTGGCCG 60.820 66.667 3.98 3.98 46.32 6.13
162 163 3.499737 CGTCCATGACTTGGCCGC 61.500 66.667 0.00 0.00 40.40 6.53
163 164 3.134127 GTCCATGACTTGGCCGCC 61.134 66.667 1.04 1.04 46.01 6.13
164 165 4.424711 TCCATGACTTGGCCGCCC 62.425 66.667 7.03 0.00 46.01 6.13
197 198 4.135153 CGCCGTCTGAGGACCCAG 62.135 72.222 0.00 4.12 39.15 4.45
198 199 2.680352 GCCGTCTGAGGACCCAGA 60.680 66.667 8.20 8.20 40.57 3.86
199 200 2.060980 GCCGTCTGAGGACCCAGAT 61.061 63.158 13.70 0.00 44.09 2.90
200 201 2.022240 GCCGTCTGAGGACCCAGATC 62.022 65.000 13.70 8.34 44.09 2.75
201 202 1.729470 CCGTCTGAGGACCCAGATCG 61.729 65.000 13.70 16.03 44.09 3.69
202 203 1.439644 GTCTGAGGACCCAGATCGC 59.560 63.158 13.70 1.34 44.09 4.58
203 204 1.758514 TCTGAGGACCCAGATCGCC 60.759 63.158 8.20 0.00 38.18 5.54
204 205 2.038813 TGAGGACCCAGATCGCCA 59.961 61.111 0.00 0.00 0.00 5.69
205 206 2.303549 CTGAGGACCCAGATCGCCAC 62.304 65.000 4.43 0.00 36.29 5.01
206 207 3.083997 AGGACCCAGATCGCCACC 61.084 66.667 0.00 0.00 0.00 4.61
207 208 4.176752 GGACCCAGATCGCCACCC 62.177 72.222 0.00 0.00 0.00 4.61
208 209 4.530857 GACCCAGATCGCCACCCG 62.531 72.222 0.00 0.00 38.61 5.28
249 250 2.892425 CGCCGCAGAACCCAGATC 60.892 66.667 0.00 0.00 0.00 2.75
250 251 2.892425 GCCGCAGAACCCAGATCG 60.892 66.667 0.00 0.00 0.00 3.69
251 252 2.202932 CCGCAGAACCCAGATCGG 60.203 66.667 0.00 0.00 0.00 4.18
252 253 2.892425 CGCAGAACCCAGATCGGC 60.892 66.667 0.00 0.00 35.11 5.54
253 254 2.514824 GCAGAACCCAGATCGGCC 60.515 66.667 0.00 0.00 32.76 6.13
254 255 2.202932 CAGAACCCAGATCGGCCG 60.203 66.667 22.12 22.12 0.00 6.13
255 256 4.162690 AGAACCCAGATCGGCCGC 62.163 66.667 23.51 7.63 0.00 6.53
273 274 4.778143 GCCACCACACGCCTAGGG 62.778 72.222 11.72 3.13 0.00 3.53
274 275 4.096003 CCACCACACGCCTAGGGG 62.096 72.222 23.57 23.57 0.00 4.79
292 293 4.039092 CCCTGCACCACCCTGGAG 62.039 72.222 0.00 0.00 40.96 3.86
293 294 2.930019 CCTGCACCACCCTGGAGA 60.930 66.667 0.00 0.00 40.96 3.71
294 295 2.348998 CTGCACCACCCTGGAGAC 59.651 66.667 0.00 0.00 40.96 3.36
295 296 3.596066 CTGCACCACCCTGGAGACG 62.596 68.421 0.00 0.00 40.96 4.18
297 298 4.742201 CACCACCCTGGAGACGCG 62.742 72.222 3.53 3.53 40.96 6.01
303 304 3.522731 CCTGGAGACGCGGGAGAG 61.523 72.222 12.47 0.00 0.00 3.20
304 305 2.438614 CTGGAGACGCGGGAGAGA 60.439 66.667 12.47 0.00 0.00 3.10
305 306 2.438614 TGGAGACGCGGGAGAGAG 60.439 66.667 12.47 0.00 0.00 3.20
306 307 3.213402 GGAGACGCGGGAGAGAGG 61.213 72.222 12.47 0.00 0.00 3.69
307 308 2.124653 GAGACGCGGGAGAGAGGA 60.125 66.667 12.47 0.00 0.00 3.71
308 309 1.749638 GAGACGCGGGAGAGAGGAA 60.750 63.158 12.47 0.00 0.00 3.36
309 310 1.304217 AGACGCGGGAGAGAGGAAA 60.304 57.895 12.47 0.00 0.00 3.13
310 311 0.684805 AGACGCGGGAGAGAGGAAAT 60.685 55.000 12.47 0.00 0.00 2.17
311 312 0.249114 GACGCGGGAGAGAGGAAATC 60.249 60.000 12.47 0.00 0.00 2.17
312 313 1.068250 CGCGGGAGAGAGGAAATCC 59.932 63.158 0.00 0.00 0.00 3.01
315 316 2.545969 GGGAGAGAGGAAATCCCCC 58.454 63.158 0.00 0.00 46.03 5.40
316 317 0.327576 GGGAGAGAGGAAATCCCCCA 60.328 60.000 6.00 0.00 46.03 4.96
317 318 0.840617 GGAGAGAGGAAATCCCCCAC 59.159 60.000 0.00 0.00 36.42 4.61
318 319 0.840617 GAGAGAGGAAATCCCCCACC 59.159 60.000 0.00 0.00 36.42 4.61
319 320 0.121197 AGAGAGGAAATCCCCCACCA 59.879 55.000 0.00 0.00 36.42 4.17
320 321 0.256177 GAGAGGAAATCCCCCACCAC 59.744 60.000 0.00 0.00 36.42 4.16
321 322 1.214992 AGAGGAAATCCCCCACCACC 61.215 60.000 0.00 0.00 36.42 4.61
322 323 1.467190 AGGAAATCCCCCACCACCA 60.467 57.895 0.00 0.00 36.42 4.17
323 324 1.304962 GGAAATCCCCCACCACCAC 60.305 63.158 0.00 0.00 0.00 4.16
324 325 1.304962 GAAATCCCCCACCACCACC 60.305 63.158 0.00 0.00 0.00 4.61
325 326 2.087857 GAAATCCCCCACCACCACCA 62.088 60.000 0.00 0.00 0.00 4.17
326 327 1.451372 AAATCCCCCACCACCACCAT 61.451 55.000 0.00 0.00 0.00 3.55
327 328 1.874299 AATCCCCCACCACCACCATC 61.874 60.000 0.00 0.00 0.00 3.51
328 329 4.424711 CCCCCACCACCACCATCG 62.425 72.222 0.00 0.00 0.00 3.84
329 330 4.424711 CCCCACCACCACCATCGG 62.425 72.222 0.00 0.00 0.00 4.18
357 358 4.144727 GGCGGAGGGAGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
358 359 2.520741 GCGGAGGGAGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
359 360 2.197324 CGGAGGGAGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
360 361 2.612251 GGAGGGAGAGGAGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
361 362 2.015726 GGAGGGAGAGGAGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
362 363 1.541672 GAGGGAGAGGAGGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
363 364 2.123033 GGGAGAGGAGGAGGGAGC 60.123 72.222 0.00 0.00 0.00 4.70
364 365 2.520741 GGAGAGGAGGAGGGAGCG 60.521 72.222 0.00 0.00 0.00 5.03
365 366 3.223589 GAGAGGAGGAGGGAGCGC 61.224 72.222 0.00 0.00 0.00 5.92
389 390 4.078516 GCGTCAGCGGGTAGGGTT 62.079 66.667 0.00 0.00 38.78 4.11
390 391 2.183555 CGTCAGCGGGTAGGGTTC 59.816 66.667 0.00 0.00 0.00 3.62
391 392 2.348888 CGTCAGCGGGTAGGGTTCT 61.349 63.158 0.00 0.00 0.00 3.01
392 393 1.218316 GTCAGCGGGTAGGGTTCTG 59.782 63.158 0.00 0.00 0.00 3.02
393 394 1.987855 TCAGCGGGTAGGGTTCTGG 60.988 63.158 0.00 0.00 0.00 3.86
394 395 2.687566 AGCGGGTAGGGTTCTGGG 60.688 66.667 0.00 0.00 0.00 4.45
395 396 4.484872 GCGGGTAGGGTTCTGGGC 62.485 72.222 0.00 0.00 0.00 5.36
396 397 2.687566 CGGGTAGGGTTCTGGGCT 60.688 66.667 0.00 0.00 0.00 5.19
397 398 2.732619 CGGGTAGGGTTCTGGGCTC 61.733 68.421 0.00 0.00 0.00 4.70
398 399 2.376165 GGGTAGGGTTCTGGGCTCC 61.376 68.421 0.00 0.00 0.00 4.70
399 400 2.732619 GGTAGGGTTCTGGGCTCCG 61.733 68.421 0.00 0.00 0.00 4.63
400 401 3.081409 TAGGGTTCTGGGCTCCGC 61.081 66.667 0.00 0.00 0.00 5.54
440 441 4.796231 CGACGCGGGGGTCAGAAG 62.796 72.222 12.47 0.00 36.73 2.85
441 442 4.452733 GACGCGGGGGTCAGAAGG 62.453 72.222 12.47 0.00 36.91 3.46
443 444 4.148825 CGCGGGGGTCAGAAGGAG 62.149 72.222 0.00 0.00 0.00 3.69
444 445 4.475135 GCGGGGGTCAGAAGGAGC 62.475 72.222 0.00 0.00 43.35 4.70
445 446 2.685380 CGGGGGTCAGAAGGAGCT 60.685 66.667 0.00 0.00 43.58 4.09
446 447 2.726351 CGGGGGTCAGAAGGAGCTC 61.726 68.421 4.71 4.71 43.98 4.09
447 448 1.306568 GGGGGTCAGAAGGAGCTCT 60.307 63.158 14.64 0.00 44.16 4.09
448 449 0.912006 GGGGGTCAGAAGGAGCTCTT 60.912 60.000 14.64 2.08 44.16 2.85
449 450 0.988063 GGGGTCAGAAGGAGCTCTTT 59.012 55.000 11.38 11.38 41.41 2.52
450 451 1.352687 GGGGTCAGAAGGAGCTCTTTT 59.647 52.381 12.88 8.07 41.41 2.27
451 452 2.224892 GGGGTCAGAAGGAGCTCTTTTT 60.225 50.000 12.88 3.97 41.41 1.94
530 531 4.819630 CGGGGAGTATAAGCTGCATTTTTA 59.180 41.667 1.02 0.00 0.00 1.52
531 532 5.277828 CGGGGAGTATAAGCTGCATTTTTAC 60.278 44.000 1.02 0.00 0.00 2.01
533 534 5.277828 GGGAGTATAAGCTGCATTTTTACCG 60.278 44.000 1.02 0.00 0.00 4.02
534 535 5.169836 AGTATAAGCTGCATTTTTACCGC 57.830 39.130 1.02 0.00 0.00 5.68
535 536 4.638421 AGTATAAGCTGCATTTTTACCGCA 59.362 37.500 1.02 0.00 0.00 5.69
536 537 2.810439 AAGCTGCATTTTTACCGCAA 57.190 40.000 1.02 0.00 34.75 4.85
537 538 3.317603 AAGCTGCATTTTTACCGCAAT 57.682 38.095 1.02 0.00 34.75 3.56
539 540 3.253230 AGCTGCATTTTTACCGCAATTC 58.747 40.909 1.02 0.00 34.75 2.17
540 541 2.027926 GCTGCATTTTTACCGCAATTCG 59.972 45.455 0.00 0.00 34.75 3.34
545 546 3.965292 TTTTTACCGCAATTCGTGTCA 57.035 38.095 0.00 0.00 36.19 3.58
575 576 5.163519 GCACTTTGCACCATTGTATATTCCT 60.164 40.000 0.00 0.00 44.26 3.36
734 738 5.014123 ACAACCCCAGAAAATGTCTAGATCA 59.986 40.000 0.00 0.00 33.56 2.92
781 785 3.196469 CACCTCTCACTAAGGAGATTGCA 59.804 47.826 0.00 0.00 42.69 4.08
813 817 1.386533 CCACAAGTGCATCTGATCCC 58.613 55.000 5.11 0.00 0.00 3.85
835 839 1.820581 GCTGCACCAATGGCATCAT 59.179 52.632 0.00 0.00 41.06 2.45
836 840 0.177141 GCTGCACCAATGGCATCATT 59.823 50.000 0.00 0.00 43.79 2.57
866 870 5.064452 CGATTTCTTTCTGTCCATCTCCTTG 59.936 44.000 0.00 0.00 0.00 3.61
868 872 4.543590 TCTTTCTGTCCATCTCCTTGTC 57.456 45.455 0.00 0.00 0.00 3.18
869 873 3.903714 TCTTTCTGTCCATCTCCTTGTCA 59.096 43.478 0.00 0.00 0.00 3.58
870 874 3.969287 TTCTGTCCATCTCCTTGTCAG 57.031 47.619 0.00 0.00 0.00 3.51
872 876 1.554160 CTGTCCATCTCCTTGTCAGCT 59.446 52.381 0.00 0.00 0.00 4.24
873 877 2.762887 CTGTCCATCTCCTTGTCAGCTA 59.237 50.000 0.00 0.00 0.00 3.32
875 879 2.763448 GTCCATCTCCTTGTCAGCTACT 59.237 50.000 0.00 0.00 0.00 2.57
876 880 3.954904 GTCCATCTCCTTGTCAGCTACTA 59.045 47.826 0.00 0.00 0.00 1.82
877 881 3.954904 TCCATCTCCTTGTCAGCTACTAC 59.045 47.826 0.00 0.00 0.00 2.73
878 882 3.068873 CCATCTCCTTGTCAGCTACTACC 59.931 52.174 0.00 0.00 0.00 3.18
879 883 3.741245 TCTCCTTGTCAGCTACTACCT 57.259 47.619 0.00 0.00 0.00 3.08
880 884 3.622630 TCTCCTTGTCAGCTACTACCTC 58.377 50.000 0.00 0.00 0.00 3.85
881 885 2.691011 CTCCTTGTCAGCTACTACCTCC 59.309 54.545 0.00 0.00 0.00 4.30
882 886 1.405821 CCTTGTCAGCTACTACCTCCG 59.594 57.143 0.00 0.00 0.00 4.63
883 887 2.093106 CTTGTCAGCTACTACCTCCGT 58.907 52.381 0.00 0.00 0.00 4.69
884 888 1.747709 TGTCAGCTACTACCTCCGTC 58.252 55.000 0.00 0.00 0.00 4.79
885 889 1.023502 GTCAGCTACTACCTCCGTCC 58.976 60.000 0.00 0.00 0.00 4.79
886 890 0.106819 TCAGCTACTACCTCCGTCCC 60.107 60.000 0.00 0.00 0.00 4.46
887 891 0.395311 CAGCTACTACCTCCGTCCCA 60.395 60.000 0.00 0.00 0.00 4.37
888 892 0.556747 AGCTACTACCTCCGTCCCAT 59.443 55.000 0.00 0.00 0.00 4.00
889 893 1.779092 AGCTACTACCTCCGTCCCATA 59.221 52.381 0.00 0.00 0.00 2.74
890 894 2.176364 AGCTACTACCTCCGTCCCATAA 59.824 50.000 0.00 0.00 0.00 1.90
891 895 3.163467 GCTACTACCTCCGTCCCATAAT 58.837 50.000 0.00 0.00 0.00 1.28
892 896 4.043812 AGCTACTACCTCCGTCCCATAATA 59.956 45.833 0.00 0.00 0.00 0.98
893 897 4.954826 GCTACTACCTCCGTCCCATAATAT 59.045 45.833 0.00 0.00 0.00 1.28
894 898 6.069206 AGCTACTACCTCCGTCCCATAATATA 60.069 42.308 0.00 0.00 0.00 0.86
895 899 6.604795 GCTACTACCTCCGTCCCATAATATAA 59.395 42.308 0.00 0.00 0.00 0.98
896 900 7.201803 GCTACTACCTCCGTCCCATAATATAAG 60.202 44.444 0.00 0.00 0.00 1.73
897 901 6.797707 ACTACCTCCGTCCCATAATATAAGA 58.202 40.000 0.00 0.00 0.00 2.10
898 902 7.243824 ACTACCTCCGTCCCATAATATAAGAA 58.756 38.462 0.00 0.00 0.00 2.52
899 903 6.356186 ACCTCCGTCCCATAATATAAGAAC 57.644 41.667 0.00 0.00 0.00 3.01
900 904 5.047519 ACCTCCGTCCCATAATATAAGAACG 60.048 44.000 0.00 0.00 0.00 3.95
901 905 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
902 906 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
903 907 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
904 908 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
905 909 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
906 910 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
907 911 7.790673 CGTCCCATAATATAAGAACGTTTTTCG 59.209 37.037 7.42 0.00 46.00 3.46
908 912 8.819974 GTCCCATAATATAAGAACGTTTTTCGA 58.180 33.333 7.42 0.00 42.86 3.71
909 913 9.037737 TCCCATAATATAAGAACGTTTTTCGAG 57.962 33.333 7.42 0.00 42.86 4.04
910 914 7.797123 CCCATAATATAAGAACGTTTTTCGAGC 59.203 37.037 7.42 0.00 42.86 5.03
911 915 8.548721 CCATAATATAAGAACGTTTTTCGAGCT 58.451 33.333 7.42 0.00 42.86 4.09
919 923 8.699283 AAGAACGTTTTTCGAGCTAATATAGT 57.301 30.769 0.46 0.00 42.86 2.12
920 924 8.699283 AGAACGTTTTTCGAGCTAATATAGTT 57.301 30.769 0.46 0.00 42.86 2.24
921 925 9.148104 AGAACGTTTTTCGAGCTAATATAGTTT 57.852 29.630 0.46 0.00 42.86 2.66
922 926 9.195831 GAACGTTTTTCGAGCTAATATAGTTTG 57.804 33.333 0.46 0.00 42.86 2.93
923 927 8.470040 ACGTTTTTCGAGCTAATATAGTTTGA 57.530 30.769 0.00 0.00 42.86 2.69
924 928 8.592998 ACGTTTTTCGAGCTAATATAGTTTGAG 58.407 33.333 0.00 0.00 42.86 3.02
925 929 8.804743 CGTTTTTCGAGCTAATATAGTTTGAGA 58.195 33.333 0.00 0.00 42.86 3.27
930 934 9.817809 TTCGAGCTAATATAGTTTGAGAAATGT 57.182 29.630 0.00 0.00 32.09 2.71
931 935 9.817809 TCGAGCTAATATAGTTTGAGAAATGTT 57.182 29.630 0.00 0.00 0.00 2.71
959 963 2.097066 TGGGACAGAGGGAGTAGCT 58.903 57.895 0.00 0.00 0.00 3.32
985 991 4.115199 GCAATCTCCCCCGTGGCT 62.115 66.667 0.00 0.00 0.00 4.75
1202 1240 1.071299 TCACCATGCGCAAGACTGT 59.929 52.632 17.11 4.33 43.02 3.55
1231 1269 1.200948 CAAAGCAAGTTGCCTCTAGCC 59.799 52.381 24.02 0.00 46.52 3.93
1267 1305 2.361357 ACCGCGTGCTCTACCTCT 60.361 61.111 4.92 0.00 0.00 3.69
1308 1346 1.404986 CCGAGCTATTTGACCGGTGAA 60.405 52.381 14.63 7.32 35.83 3.18
1386 1424 0.319555 CCAAGAACCGTGAGCTCGAA 60.320 55.000 9.64 0.00 0.00 3.71
1447 1485 1.346068 GTGTCTTCCCTGAGTTGCTCT 59.654 52.381 0.00 0.00 0.00 4.09
1605 1643 2.672996 GTGCTCATGGGTGCCGTT 60.673 61.111 0.00 0.00 32.64 4.44
1615 1653 2.590114 GGTGCCGTTGAGGGGTACT 61.590 63.158 0.00 0.00 39.73 2.73
1668 1706 0.195096 ACCCACTTTACCCTGGAGGA 59.805 55.000 0.00 0.00 39.89 3.71
1684 1722 2.587522 GAGGAAGCTTTGACCCACTTT 58.412 47.619 0.00 0.00 0.00 2.66
1852 1890 2.217750 CCGATCCAGTCAACAACAACA 58.782 47.619 0.00 0.00 0.00 3.33
1864 1902 2.037901 ACAACAACACATGGGCATTCA 58.962 42.857 0.00 0.00 0.00 2.57
1866 1904 1.999648 ACAACACATGGGCATTCACT 58.000 45.000 0.00 0.00 0.00 3.41
1930 1968 3.518003 GCAAGCTGCGGGATGATT 58.482 55.556 0.00 0.00 31.71 2.57
2072 2110 3.840666 ACTTGTAGTGATCACCTGGACAT 59.159 43.478 22.21 4.50 0.00 3.06
2090 2128 8.317679 CCTGGACATTTGGGTTTATTTAATCAA 58.682 33.333 0.00 0.00 0.00 2.57
2185 2223 3.149196 GGCACTCCCACCATAACATATG 58.851 50.000 0.00 0.00 0.00 1.78
2224 2262 2.031120 CTGCCTTGGACTCCAAAAACA 58.969 47.619 11.77 8.89 43.44 2.83
2262 2300 0.385751 ACTGCTCCACGGATGATACG 59.614 55.000 0.00 0.00 37.36 3.06
2346 2385 2.742348 TGCCTGCTGGATTTCATCATT 58.258 42.857 14.77 0.00 34.57 2.57
2380 2419 1.730121 GCAATTCCTGTCGTGTGCATG 60.730 52.381 0.00 0.00 32.29 4.06
2403 2442 5.123186 TGGCACGATTCTAAAATGTTACAGG 59.877 40.000 0.00 0.00 0.00 4.00
2422 2461 1.351350 GGGGGAGTATATGGTTGAGGC 59.649 57.143 0.00 0.00 0.00 4.70
2430 2472 2.057137 TATGGTTGAGGCCTTCATGC 57.943 50.000 6.77 0.00 35.27 4.06
2805 2933 9.426837 TCTCCTTAAATTTTCTCATGCAATTTG 57.573 29.630 0.00 0.00 33.28 2.32
2806 2934 9.211485 CTCCTTAAATTTTCTCATGCAATTTGT 57.789 29.630 0.00 0.00 33.28 2.83
2807 2935 9.558396 TCCTTAAATTTTCTCATGCAATTTGTT 57.442 25.926 0.00 0.00 33.28 2.83
2808 2936 9.601971 CCTTAAATTTTCTCATGCAATTTGTTG 57.398 29.630 0.00 0.00 33.28 3.33
2809 2937 9.601971 CTTAAATTTTCTCATGCAATTTGTTGG 57.398 29.630 0.00 0.00 33.28 3.77
2810 2938 7.804843 AAATTTTCTCATGCAATTTGTTGGA 57.195 28.000 0.00 0.00 30.59 3.53
2811 2939 7.804843 AATTTTCTCATGCAATTTGTTGGAA 57.195 28.000 0.00 1.47 0.00 3.53
2812 2940 7.804843 ATTTTCTCATGCAATTTGTTGGAAA 57.195 28.000 0.00 6.28 0.00 3.13
2813 2941 7.804843 TTTTCTCATGCAATTTGTTGGAAAT 57.195 28.000 0.00 0.00 0.00 2.17
2814 2942 8.899427 TTTTCTCATGCAATTTGTTGGAAATA 57.101 26.923 0.00 0.67 0.00 1.40
2815 2943 9.504708 TTTTCTCATGCAATTTGTTGGAAATAT 57.495 25.926 0.00 0.00 0.00 1.28
2816 2944 8.481974 TTCTCATGCAATTTGTTGGAAATATG 57.518 30.769 0.00 0.00 0.00 1.78
2817 2945 7.838884 TCTCATGCAATTTGTTGGAAATATGA 58.161 30.769 0.00 0.00 0.00 2.15
2818 2946 7.977293 TCTCATGCAATTTGTTGGAAATATGAG 59.023 33.333 0.00 0.00 31.36 2.90
2819 2947 6.535865 TCATGCAATTTGTTGGAAATATGAGC 59.464 34.615 0.00 0.00 0.00 4.26
2820 2948 5.791666 TGCAATTTGTTGGAAATATGAGCA 58.208 33.333 0.00 0.00 0.00 4.26
2821 2949 6.228995 TGCAATTTGTTGGAAATATGAGCAA 58.771 32.000 0.00 0.00 0.00 3.91
2822 2950 6.879993 TGCAATTTGTTGGAAATATGAGCAAT 59.120 30.769 0.00 0.00 0.00 3.56
2823 2951 7.390996 TGCAATTTGTTGGAAATATGAGCAATT 59.609 29.630 0.00 0.00 0.00 2.32
2824 2952 8.238631 GCAATTTGTTGGAAATATGAGCAATTT 58.761 29.630 0.00 0.00 0.00 1.82
2827 2955 8.770438 TTTGTTGGAAATATGAGCAATTTACC 57.230 30.769 0.00 0.00 0.00 2.85
2828 2956 7.473735 TGTTGGAAATATGAGCAATTTACCA 57.526 32.000 0.00 0.00 0.00 3.25
2829 2957 8.076910 TGTTGGAAATATGAGCAATTTACCAT 57.923 30.769 0.00 0.00 30.60 3.55
2830 2958 9.194972 TGTTGGAAATATGAGCAATTTACCATA 57.805 29.630 0.00 0.00 30.60 2.74
2833 2961 9.585369 TGGAAATATGAGCAATTTACCATATGA 57.415 29.630 3.65 0.00 33.83 2.15
2894 3022 9.890629 ATTATAGTAGAGAAACAAGTCATGCAA 57.109 29.630 0.00 0.00 0.00 4.08
2895 3023 9.890629 TTATAGTAGAGAAACAAGTCATGCAAT 57.109 29.630 0.00 0.00 0.00 3.56
2896 3024 6.734104 AGTAGAGAAACAAGTCATGCAATC 57.266 37.500 0.00 0.00 0.00 2.67
2897 3025 6.471146 AGTAGAGAAACAAGTCATGCAATCT 58.529 36.000 0.00 0.00 0.00 2.40
2898 3026 5.624344 AGAGAAACAAGTCATGCAATCTG 57.376 39.130 0.00 0.00 0.00 2.90
2899 3027 5.311265 AGAGAAACAAGTCATGCAATCTGA 58.689 37.500 0.00 0.00 0.00 3.27
2900 3028 5.180868 AGAGAAACAAGTCATGCAATCTGAC 59.819 40.000 10.35 10.35 42.68 3.51
2901 3029 4.823442 AGAAACAAGTCATGCAATCTGACA 59.177 37.500 18.52 0.00 44.37 3.58
2902 3030 4.761235 AACAAGTCATGCAATCTGACAG 57.239 40.909 18.52 13.31 44.37 3.51
2903 3031 3.748083 ACAAGTCATGCAATCTGACAGT 58.252 40.909 18.52 13.83 44.37 3.55
2904 3032 3.501062 ACAAGTCATGCAATCTGACAGTG 59.499 43.478 18.52 16.87 44.37 3.66
2905 3033 3.690475 AGTCATGCAATCTGACAGTGA 57.310 42.857 18.52 0.00 44.37 3.41
2906 3034 3.597255 AGTCATGCAATCTGACAGTGAG 58.403 45.455 18.52 0.00 44.37 3.51
2907 3035 3.260128 AGTCATGCAATCTGACAGTGAGA 59.740 43.478 18.52 0.00 44.37 3.27
2908 3036 3.999001 GTCATGCAATCTGACAGTGAGAA 59.001 43.478 12.91 0.00 42.08 2.87
2909 3037 4.093115 GTCATGCAATCTGACAGTGAGAAG 59.907 45.833 12.91 0.00 42.08 2.85
2910 3038 3.049708 TGCAATCTGACAGTGAGAAGG 57.950 47.619 1.59 0.00 0.00 3.46
2911 3039 2.369860 TGCAATCTGACAGTGAGAAGGT 59.630 45.455 1.59 0.00 0.00 3.50
2912 3040 3.578282 TGCAATCTGACAGTGAGAAGGTA 59.422 43.478 1.59 0.00 0.00 3.08
2913 3041 4.040339 TGCAATCTGACAGTGAGAAGGTAA 59.960 41.667 1.59 0.00 0.00 2.85
2914 3042 4.997395 GCAATCTGACAGTGAGAAGGTAAA 59.003 41.667 1.59 0.00 0.00 2.01
2915 3043 5.645497 GCAATCTGACAGTGAGAAGGTAAAT 59.355 40.000 1.59 0.00 0.00 1.40
2916 3044 6.818644 GCAATCTGACAGTGAGAAGGTAAATA 59.181 38.462 1.59 0.00 0.00 1.40
2917 3045 7.010923 GCAATCTGACAGTGAGAAGGTAAATAG 59.989 40.741 1.59 0.00 0.00 1.73
2918 3046 5.967088 TCTGACAGTGAGAAGGTAAATAGC 58.033 41.667 1.59 0.00 0.00 2.97
2919 3047 5.480422 TCTGACAGTGAGAAGGTAAATAGCA 59.520 40.000 1.59 0.00 0.00 3.49
2920 3048 6.155221 TCTGACAGTGAGAAGGTAAATAGCAT 59.845 38.462 1.59 0.00 0.00 3.79
2921 3049 6.341316 TGACAGTGAGAAGGTAAATAGCATC 58.659 40.000 0.00 0.00 0.00 3.91
2922 3050 6.155221 TGACAGTGAGAAGGTAAATAGCATCT 59.845 38.462 0.00 0.00 34.87 2.90
2923 3051 6.344500 ACAGTGAGAAGGTAAATAGCATCTG 58.656 40.000 0.00 0.00 32.68 2.90
2924 3052 5.236047 CAGTGAGAAGGTAAATAGCATCTGC 59.764 44.000 2.49 0.00 42.49 4.26
2925 3053 5.104776 AGTGAGAAGGTAAATAGCATCTGCA 60.105 40.000 4.79 0.00 45.16 4.41
2926 3054 5.586243 GTGAGAAGGTAAATAGCATCTGCAA 59.414 40.000 4.79 0.00 45.16 4.08
2927 3055 6.094048 GTGAGAAGGTAAATAGCATCTGCAAA 59.906 38.462 4.79 0.00 45.16 3.68
2928 3056 6.830324 TGAGAAGGTAAATAGCATCTGCAAAT 59.170 34.615 4.79 0.00 45.16 2.32
2929 3057 7.992608 TGAGAAGGTAAATAGCATCTGCAAATA 59.007 33.333 4.79 0.00 45.16 1.40
2930 3058 8.930846 AGAAGGTAAATAGCATCTGCAAATAT 57.069 30.769 4.79 0.00 45.16 1.28
2931 3059 8.790718 AGAAGGTAAATAGCATCTGCAAATATG 58.209 33.333 4.79 0.00 45.16 1.78
2932 3060 8.696043 AAGGTAAATAGCATCTGCAAATATGA 57.304 30.769 4.79 0.00 45.16 2.15
2933 3061 8.696043 AGGTAAATAGCATCTGCAAATATGAA 57.304 30.769 4.79 0.00 45.16 2.57
2934 3062 8.571336 AGGTAAATAGCATCTGCAAATATGAAC 58.429 33.333 4.79 0.00 45.16 3.18
2935 3063 8.571336 GGTAAATAGCATCTGCAAATATGAACT 58.429 33.333 4.79 0.24 45.16 3.01
2936 3064 9.390795 GTAAATAGCATCTGCAAATATGAACTG 57.609 33.333 4.79 0.00 45.16 3.16
2937 3065 7.578310 AATAGCATCTGCAAATATGAACTGT 57.422 32.000 4.79 0.00 45.16 3.55
2938 3066 8.681486 AATAGCATCTGCAAATATGAACTGTA 57.319 30.769 4.79 0.00 45.16 2.74
2939 3067 8.681486 ATAGCATCTGCAAATATGAACTGTAA 57.319 30.769 4.79 0.00 45.16 2.41
2940 3068 6.789262 AGCATCTGCAAATATGAACTGTAAC 58.211 36.000 4.79 0.00 45.16 2.50
2941 3069 5.973565 GCATCTGCAAATATGAACTGTAACC 59.026 40.000 7.37 0.00 41.59 2.85
2942 3070 6.404623 GCATCTGCAAATATGAACTGTAACCA 60.405 38.462 7.37 0.00 41.59 3.67
2943 3071 7.537715 CATCTGCAAATATGAACTGTAACCAA 58.462 34.615 0.00 0.00 0.00 3.67
2944 3072 7.144722 TCTGCAAATATGAACTGTAACCAAG 57.855 36.000 0.00 0.00 0.00 3.61
2945 3073 5.708948 TGCAAATATGAACTGTAACCAAGC 58.291 37.500 0.00 0.00 0.00 4.01
2946 3074 5.242615 TGCAAATATGAACTGTAACCAAGCA 59.757 36.000 0.00 0.00 0.00 3.91
2947 3075 6.071447 TGCAAATATGAACTGTAACCAAGCAT 60.071 34.615 0.00 0.00 0.00 3.79
2948 3076 7.121907 TGCAAATATGAACTGTAACCAAGCATA 59.878 33.333 0.00 0.00 0.00 3.14
2949 3077 8.137437 GCAAATATGAACTGTAACCAAGCATAT 58.863 33.333 0.00 0.00 0.00 1.78
2950 3078 9.669353 CAAATATGAACTGTAACCAAGCATATC 57.331 33.333 0.00 0.00 29.90 1.63
2951 3079 9.632638 AAATATGAACTGTAACCAAGCATATCT 57.367 29.630 0.00 0.00 29.90 1.98
2953 3081 9.935241 ATATGAACTGTAACCAAGCATATCTAG 57.065 33.333 0.00 0.00 0.00 2.43
2954 3082 7.418337 TGAACTGTAACCAAGCATATCTAGA 57.582 36.000 0.00 0.00 0.00 2.43
2955 3083 7.492524 TGAACTGTAACCAAGCATATCTAGAG 58.507 38.462 0.00 0.00 0.00 2.43
2956 3084 5.848406 ACTGTAACCAAGCATATCTAGAGC 58.152 41.667 0.00 0.00 0.00 4.09
2957 3085 5.363868 ACTGTAACCAAGCATATCTAGAGCA 59.636 40.000 0.00 0.00 0.00 4.26
2958 3086 5.847304 TGTAACCAAGCATATCTAGAGCAG 58.153 41.667 0.00 0.00 0.00 4.24
2959 3087 5.598417 TGTAACCAAGCATATCTAGAGCAGA 59.402 40.000 0.00 0.00 37.79 4.26
2960 3088 4.599047 ACCAAGCATATCTAGAGCAGAC 57.401 45.455 0.00 0.00 35.62 3.51
2961 3089 3.963374 ACCAAGCATATCTAGAGCAGACA 59.037 43.478 0.00 0.00 35.62 3.41
2962 3090 4.039004 ACCAAGCATATCTAGAGCAGACAG 59.961 45.833 0.00 0.00 35.62 3.51
2963 3091 4.039004 CCAAGCATATCTAGAGCAGACAGT 59.961 45.833 0.00 0.00 35.62 3.55
2964 3092 5.242615 CCAAGCATATCTAGAGCAGACAGTA 59.757 44.000 0.00 0.00 35.62 2.74
2965 3093 6.380995 CAAGCATATCTAGAGCAGACAGTAG 58.619 44.000 0.00 0.00 35.62 2.57
2966 3094 5.875224 AGCATATCTAGAGCAGACAGTAGA 58.125 41.667 0.00 0.00 35.62 2.59
2967 3095 5.939883 AGCATATCTAGAGCAGACAGTAGAG 59.060 44.000 0.00 0.00 35.62 2.43
2968 3096 5.391950 GCATATCTAGAGCAGACAGTAGAGC 60.392 48.000 0.00 0.00 35.62 4.09
2969 3097 3.636153 TCTAGAGCAGACAGTAGAGCA 57.364 47.619 0.00 0.00 0.00 4.26
2970 3098 3.956744 TCTAGAGCAGACAGTAGAGCAA 58.043 45.455 0.00 0.00 0.00 3.91
2971 3099 3.692101 TCTAGAGCAGACAGTAGAGCAAC 59.308 47.826 0.00 0.00 0.00 4.17
2972 3100 2.524306 AGAGCAGACAGTAGAGCAACT 58.476 47.619 0.00 0.00 0.00 3.16
2973 3101 2.896685 AGAGCAGACAGTAGAGCAACTT 59.103 45.455 0.00 0.00 0.00 2.66
2974 3102 2.992543 GAGCAGACAGTAGAGCAACTTG 59.007 50.000 0.00 0.00 0.00 3.16
2975 3103 2.072298 GCAGACAGTAGAGCAACTTGG 58.928 52.381 0.00 0.00 0.00 3.61
2976 3104 2.289072 GCAGACAGTAGAGCAACTTGGA 60.289 50.000 0.00 0.00 0.00 3.53
2977 3105 3.618507 GCAGACAGTAGAGCAACTTGGAT 60.619 47.826 0.00 0.00 0.00 3.41
2978 3106 4.382040 GCAGACAGTAGAGCAACTTGGATA 60.382 45.833 0.00 0.00 0.00 2.59
2979 3107 5.683509 GCAGACAGTAGAGCAACTTGGATAT 60.684 44.000 0.00 0.00 0.00 1.63
2980 3108 6.461648 GCAGACAGTAGAGCAACTTGGATATA 60.462 42.308 0.00 0.00 0.00 0.86
2981 3109 7.665690 CAGACAGTAGAGCAACTTGGATATAT 58.334 38.462 0.00 0.00 0.00 0.86
2982 3110 7.598118 CAGACAGTAGAGCAACTTGGATATATG 59.402 40.741 0.00 0.00 0.00 1.78
2983 3111 7.507277 AGACAGTAGAGCAACTTGGATATATGA 59.493 37.037 0.00 0.00 0.00 2.15
2984 3112 8.023021 ACAGTAGAGCAACTTGGATATATGAA 57.977 34.615 0.00 0.00 0.00 2.57
2985 3113 8.147058 ACAGTAGAGCAACTTGGATATATGAAG 58.853 37.037 0.00 0.00 0.00 3.02
2986 3114 8.147058 CAGTAGAGCAACTTGGATATATGAAGT 58.853 37.037 0.00 0.00 0.00 3.01
2987 3115 9.368416 AGTAGAGCAACTTGGATATATGAAGTA 57.632 33.333 7.01 0.00 29.71 2.24
2988 3116 9.632807 GTAGAGCAACTTGGATATATGAAGTAG 57.367 37.037 7.01 0.00 29.71 2.57
2989 3117 8.484214 AGAGCAACTTGGATATATGAAGTAGA 57.516 34.615 7.01 0.00 29.71 2.59
2990 3118 8.928448 AGAGCAACTTGGATATATGAAGTAGAA 58.072 33.333 7.01 0.00 29.71 2.10
2991 3119 8.894768 AGCAACTTGGATATATGAAGTAGAAC 57.105 34.615 7.01 0.53 29.71 3.01
2992 3120 7.934120 AGCAACTTGGATATATGAAGTAGAACC 59.066 37.037 7.01 0.00 29.71 3.62
2993 3121 7.934120 GCAACTTGGATATATGAAGTAGAACCT 59.066 37.037 7.01 0.00 29.71 3.50
3006 3134 8.651589 TGAAGTAGAACCTATCATATGTAGGG 57.348 38.462 23.73 16.77 42.47 3.53
3007 3135 7.178628 TGAAGTAGAACCTATCATATGTAGGGC 59.821 40.741 23.73 18.11 42.47 5.19
3008 3136 6.562228 AGTAGAACCTATCATATGTAGGGCA 58.438 40.000 23.73 11.08 42.47 5.36
3009 3137 6.665680 AGTAGAACCTATCATATGTAGGGCAG 59.334 42.308 23.73 9.00 42.47 4.85
3010 3138 5.655394 AGAACCTATCATATGTAGGGCAGA 58.345 41.667 23.73 0.00 42.47 4.26
3011 3139 5.482175 AGAACCTATCATATGTAGGGCAGAC 59.518 44.000 23.73 14.73 42.47 3.51
3012 3140 4.752063 ACCTATCATATGTAGGGCAGACA 58.248 43.478 23.73 0.00 42.47 3.41
3013 3141 4.528596 ACCTATCATATGTAGGGCAGACAC 59.471 45.833 23.73 0.00 42.47 3.67
3014 3142 4.774726 CCTATCATATGTAGGGCAGACACT 59.225 45.833 17.21 0.00 35.99 3.55
3015 3143 5.952347 CCTATCATATGTAGGGCAGACACTA 59.048 44.000 17.21 0.00 35.99 2.74
3016 3144 5.991933 ATCATATGTAGGGCAGACACTAG 57.008 43.478 1.90 0.00 0.00 2.57
3017 3145 5.061721 TCATATGTAGGGCAGACACTAGA 57.938 43.478 1.90 0.00 0.00 2.43
3018 3146 5.454966 TCATATGTAGGGCAGACACTAGAA 58.545 41.667 1.90 0.00 0.00 2.10
3019 3147 5.302059 TCATATGTAGGGCAGACACTAGAAC 59.698 44.000 1.90 0.00 0.00 3.01
3020 3148 2.884320 TGTAGGGCAGACACTAGAACA 58.116 47.619 0.00 0.00 0.00 3.18
3021 3149 3.236047 TGTAGGGCAGACACTAGAACAA 58.764 45.455 0.00 0.00 0.00 2.83
3022 3150 3.258372 TGTAGGGCAGACACTAGAACAAG 59.742 47.826 0.00 0.00 0.00 3.16
3023 3151 1.625818 AGGGCAGACACTAGAACAAGG 59.374 52.381 0.00 0.00 0.00 3.61
3024 3152 1.623811 GGGCAGACACTAGAACAAGGA 59.376 52.381 0.00 0.00 0.00 3.36
3025 3153 2.038557 GGGCAGACACTAGAACAAGGAA 59.961 50.000 0.00 0.00 0.00 3.36
3026 3154 3.067833 GGCAGACACTAGAACAAGGAAC 58.932 50.000 0.00 0.00 0.00 3.62
3028 3156 3.743396 GCAGACACTAGAACAAGGAACTG 59.257 47.826 0.00 0.00 40.86 3.16
3029 3157 4.740934 GCAGACACTAGAACAAGGAACTGT 60.741 45.833 0.00 0.00 40.86 3.55
3030 3158 4.747108 CAGACACTAGAACAAGGAACTGTG 59.253 45.833 0.00 0.00 40.86 3.66
3031 3159 4.649674 AGACACTAGAACAAGGAACTGTGA 59.350 41.667 0.00 0.00 40.86 3.58
3032 3160 4.694339 ACACTAGAACAAGGAACTGTGAC 58.306 43.478 0.00 0.00 40.86 3.67
3033 3161 4.161565 ACACTAGAACAAGGAACTGTGACA 59.838 41.667 0.00 0.00 40.86 3.58
3034 3162 4.747108 CACTAGAACAAGGAACTGTGACAG 59.253 45.833 11.70 11.70 40.86 3.51
3035 3163 3.199880 AGAACAAGGAACTGTGACAGG 57.800 47.619 17.92 0.00 40.86 4.00
3036 3164 2.771943 AGAACAAGGAACTGTGACAGGA 59.228 45.455 17.92 0.00 40.86 3.86
3037 3165 3.392616 AGAACAAGGAACTGTGACAGGAT 59.607 43.478 17.92 5.14 40.86 3.24
3038 3166 3.409026 ACAAGGAACTGTGACAGGATC 57.591 47.619 17.92 13.93 40.86 3.36
3039 3167 2.975489 ACAAGGAACTGTGACAGGATCT 59.025 45.455 17.92 7.69 40.86 2.75
3040 3168 3.007398 ACAAGGAACTGTGACAGGATCTC 59.993 47.826 17.92 7.51 40.86 2.75
3041 3169 3.182887 AGGAACTGTGACAGGATCTCT 57.817 47.619 17.92 10.58 37.18 3.10
3042 3170 4.323569 AGGAACTGTGACAGGATCTCTA 57.676 45.455 17.92 0.00 37.18 2.43
3043 3171 4.678256 AGGAACTGTGACAGGATCTCTAA 58.322 43.478 17.92 0.00 37.18 2.10
3044 3172 4.464597 AGGAACTGTGACAGGATCTCTAAC 59.535 45.833 17.92 2.35 37.18 2.34
3045 3173 4.220821 GGAACTGTGACAGGATCTCTAACA 59.779 45.833 17.92 0.00 35.51 2.41
3046 3174 5.279506 GGAACTGTGACAGGATCTCTAACAA 60.280 44.000 17.92 0.00 35.51 2.83
3047 3175 5.808366 ACTGTGACAGGATCTCTAACAAA 57.192 39.130 17.92 0.00 35.51 2.83
3048 3176 6.174720 ACTGTGACAGGATCTCTAACAAAA 57.825 37.500 17.92 0.00 35.51 2.44
3049 3177 6.591935 ACTGTGACAGGATCTCTAACAAAAA 58.408 36.000 17.92 0.00 35.51 1.94
3050 3178 6.708054 ACTGTGACAGGATCTCTAACAAAAAG 59.292 38.462 17.92 0.00 35.51 2.27
3051 3179 6.826668 TGTGACAGGATCTCTAACAAAAAGA 58.173 36.000 0.00 0.00 0.00 2.52
3052 3180 6.931281 TGTGACAGGATCTCTAACAAAAAGAG 59.069 38.462 0.00 0.00 41.59 2.85
3053 3181 5.934625 TGACAGGATCTCTAACAAAAAGAGC 59.065 40.000 0.00 0.00 40.30 4.09
3054 3182 5.869579 ACAGGATCTCTAACAAAAAGAGCA 58.130 37.500 0.00 0.00 40.30 4.26
3055 3183 6.299141 ACAGGATCTCTAACAAAAAGAGCAA 58.701 36.000 0.00 0.00 40.30 3.91
3056 3184 6.429385 ACAGGATCTCTAACAAAAAGAGCAAG 59.571 38.462 0.00 0.00 40.30 4.01
3057 3185 6.652481 CAGGATCTCTAACAAAAAGAGCAAGA 59.348 38.462 0.00 0.00 40.30 3.02
3058 3186 7.173907 CAGGATCTCTAACAAAAAGAGCAAGAA 59.826 37.037 0.00 0.00 40.30 2.52
3059 3187 7.174080 AGGATCTCTAACAAAAAGAGCAAGAAC 59.826 37.037 0.00 0.00 40.30 3.01
3060 3188 7.041098 GGATCTCTAACAAAAAGAGCAAGAACA 60.041 37.037 0.00 0.00 40.30 3.18
3061 3189 7.016361 TCTCTAACAAAAAGAGCAAGAACAC 57.984 36.000 0.00 0.00 40.30 3.32
3062 3190 6.823689 TCTCTAACAAAAAGAGCAAGAACACT 59.176 34.615 0.00 0.00 40.30 3.55
3063 3191 7.336931 TCTCTAACAAAAAGAGCAAGAACACTT 59.663 33.333 0.00 0.00 40.30 3.16
3064 3192 8.500753 TCTAACAAAAAGAGCAAGAACACTTA 57.499 30.769 0.00 0.00 0.00 2.24
3065 3193 8.395633 TCTAACAAAAAGAGCAAGAACACTTAC 58.604 33.333 0.00 0.00 0.00 2.34
3066 3194 5.569413 ACAAAAAGAGCAAGAACACTTACG 58.431 37.500 0.00 0.00 0.00 3.18
3067 3195 4.813296 AAAAGAGCAAGAACACTTACGG 57.187 40.909 0.00 0.00 0.00 4.02
3068 3196 2.457366 AGAGCAAGAACACTTACGGG 57.543 50.000 0.00 0.00 0.00 5.28
3069 3197 1.002087 AGAGCAAGAACACTTACGGGG 59.998 52.381 0.00 0.00 0.00 5.73
3070 3198 0.605589 AGCAAGAACACTTACGGGGC 60.606 55.000 0.00 0.00 0.00 5.80
3071 3199 0.887387 GCAAGAACACTTACGGGGCA 60.887 55.000 0.00 0.00 0.00 5.36
3072 3200 1.156736 CAAGAACACTTACGGGGCAG 58.843 55.000 0.00 0.00 0.00 4.85
3073 3201 0.605589 AAGAACACTTACGGGGCAGC 60.606 55.000 0.00 0.00 0.00 5.25
3074 3202 1.302192 GAACACTTACGGGGCAGCA 60.302 57.895 0.00 0.00 0.00 4.41
3075 3203 1.298859 GAACACTTACGGGGCAGCAG 61.299 60.000 0.00 0.00 0.00 4.24
3076 3204 1.764571 AACACTTACGGGGCAGCAGA 61.765 55.000 0.00 0.00 0.00 4.26
3077 3205 1.003839 CACTTACGGGGCAGCAGAA 60.004 57.895 0.00 0.00 0.00 3.02
3078 3206 1.021390 CACTTACGGGGCAGCAGAAG 61.021 60.000 0.00 0.00 0.00 2.85
3079 3207 2.046314 TTACGGGGCAGCAGAAGC 60.046 61.111 0.00 0.00 42.56 3.86
3080 3208 2.803155 CTTACGGGGCAGCAGAAGCA 62.803 60.000 0.00 0.00 45.49 3.91
3081 3209 3.605749 TACGGGGCAGCAGAAGCAC 62.606 63.158 0.00 0.00 45.49 4.40
3082 3210 4.711949 CGGGGCAGCAGAAGCACT 62.712 66.667 0.00 0.00 45.49 4.40
3084 3212 3.060615 GGGCAGCAGAAGCACTGG 61.061 66.667 11.72 0.00 45.82 4.00
3085 3213 2.033141 GGCAGCAGAAGCACTGGA 59.967 61.111 11.72 0.00 45.82 3.86
3086 3214 2.331132 GGCAGCAGAAGCACTGGAC 61.331 63.158 11.72 0.00 45.82 4.02
3087 3215 1.302351 GCAGCAGAAGCACTGGACT 60.302 57.895 11.72 0.69 45.82 3.85
3088 3216 0.888285 GCAGCAGAAGCACTGGACTT 60.888 55.000 11.72 0.00 45.82 3.01
3089 3217 0.873054 CAGCAGAAGCACTGGACTTG 59.127 55.000 11.72 0.00 45.82 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.961277 GCCTGGTGGTCTTGTCGTG 60.961 63.158 0.00 0.00 35.27 4.35
1 2 2.426023 GCCTGGTGGTCTTGTCGT 59.574 61.111 0.00 0.00 35.27 4.34
3 4 2.034221 GGGCCTGGTGGTCTTGTC 59.966 66.667 0.84 0.00 38.23 3.18
4 5 2.450502 AGGGCCTGGTGGTCTTGT 60.451 61.111 4.50 0.00 38.23 3.16
5 6 2.352805 GAGGGCCTGGTGGTCTTG 59.647 66.667 12.95 0.00 38.23 3.02
6 7 2.936032 GGAGGGCCTGGTGGTCTT 60.936 66.667 12.95 0.00 38.23 3.01
7 8 4.270153 TGGAGGGCCTGGTGGTCT 62.270 66.667 12.95 0.00 38.23 3.85
8 9 4.035102 GTGGAGGGCCTGGTGGTC 62.035 72.222 12.95 0.00 37.19 4.02
29 30 3.267860 CTTCAGATCGGCAGCGGC 61.268 66.667 0.00 0.00 40.13 6.53
30 31 2.587194 CCTTCAGATCGGCAGCGG 60.587 66.667 0.00 0.00 0.00 5.52
31 32 3.267860 GCCTTCAGATCGGCAGCG 61.268 66.667 4.64 0.00 45.59 5.18
41 42 1.136147 GCGCACAATCTGCCTTCAG 59.864 57.895 0.30 0.00 43.84 3.02
42 43 2.334946 GGCGCACAATCTGCCTTCA 61.335 57.895 10.83 0.00 45.40 3.02
43 44 2.486966 GGCGCACAATCTGCCTTC 59.513 61.111 10.83 0.00 45.40 3.46
47 48 4.465512 CGGTGGCGCACAATCTGC 62.466 66.667 10.83 0.00 43.21 4.26
48 49 4.465512 GCGGTGGCGCACAATCTG 62.466 66.667 10.83 0.49 35.86 2.90
50 51 4.465512 CTGCGGTGGCGCACAATC 62.466 66.667 10.83 0.00 44.10 2.67
140 141 3.474806 CAAGTCATGGACGGCGAC 58.525 61.111 16.62 7.58 37.67 5.19
180 181 4.135153 CTGGGTCCTCAGACGGCG 62.135 72.222 4.80 4.80 44.54 6.46
181 182 2.022240 GATCTGGGTCCTCAGACGGC 62.022 65.000 11.06 0.00 45.27 5.68
182 183 1.729470 CGATCTGGGTCCTCAGACGG 61.729 65.000 11.06 4.47 45.27 4.79
183 184 1.730487 CGATCTGGGTCCTCAGACG 59.270 63.158 11.06 12.10 45.27 4.18
184 185 1.439644 GCGATCTGGGTCCTCAGAC 59.560 63.158 11.06 6.22 45.27 3.51
185 186 1.758514 GGCGATCTGGGTCCTCAGA 60.759 63.158 11.19 11.19 46.32 3.27
186 187 2.060383 TGGCGATCTGGGTCCTCAG 61.060 63.158 0.00 1.89 36.17 3.35
187 188 2.038813 TGGCGATCTGGGTCCTCA 59.961 61.111 0.00 0.00 0.00 3.86
188 189 2.501610 GTGGCGATCTGGGTCCTC 59.498 66.667 0.00 0.00 0.00 3.71
189 190 3.083997 GGTGGCGATCTGGGTCCT 61.084 66.667 0.00 0.00 0.00 3.85
190 191 4.176752 GGGTGGCGATCTGGGTCC 62.177 72.222 0.00 0.00 0.00 4.46
191 192 4.530857 CGGGTGGCGATCTGGGTC 62.531 72.222 0.00 0.00 0.00 4.46
232 233 2.892425 GATCTGGGTTCTGCGGCG 60.892 66.667 0.51 0.51 0.00 6.46
233 234 2.892425 CGATCTGGGTTCTGCGGC 60.892 66.667 0.00 0.00 0.00 6.53
234 235 2.202932 CCGATCTGGGTTCTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
235 236 2.892425 GCCGATCTGGGTTCTGCG 60.892 66.667 5.87 0.00 38.63 5.18
236 237 2.514824 GGCCGATCTGGGTTCTGC 60.515 66.667 0.00 0.00 38.63 4.26
237 238 2.202932 CGGCCGATCTGGGTTCTG 60.203 66.667 24.07 0.00 38.63 3.02
238 239 4.162690 GCGGCCGATCTGGGTTCT 62.163 66.667 33.48 0.00 38.63 3.01
256 257 4.778143 CCCTAGGCGTGTGGTGGC 62.778 72.222 2.05 0.00 0.00 5.01
257 258 4.096003 CCCCTAGGCGTGTGGTGG 62.096 72.222 2.05 0.00 0.00 4.61
268 269 4.115199 GTGGTGCAGGGCCCCTAG 62.115 72.222 21.43 10.55 29.64 3.02
275 276 4.039092 CTCCAGGGTGGTGCAGGG 62.039 72.222 0.00 0.00 39.03 4.45
276 277 2.930019 TCTCCAGGGTGGTGCAGG 60.930 66.667 0.00 0.00 39.03 4.85
277 278 2.348998 GTCTCCAGGGTGGTGCAG 59.651 66.667 0.00 0.00 39.03 4.41
278 279 3.625897 CGTCTCCAGGGTGGTGCA 61.626 66.667 0.00 0.00 39.03 4.57
280 281 4.742201 CGCGTCTCCAGGGTGGTG 62.742 72.222 0.00 0.00 39.03 4.17
286 287 3.522731 CTCTCCCGCGTCTCCAGG 61.523 72.222 4.92 0.00 0.00 4.45
287 288 2.438614 TCTCTCCCGCGTCTCCAG 60.439 66.667 4.92 0.00 0.00 3.86
288 289 2.438614 CTCTCTCCCGCGTCTCCA 60.439 66.667 4.92 0.00 0.00 3.86
289 290 3.213402 CCTCTCTCCCGCGTCTCC 61.213 72.222 4.92 0.00 0.00 3.71
290 291 1.313812 TTTCCTCTCTCCCGCGTCTC 61.314 60.000 4.92 0.00 0.00 3.36
291 292 0.684805 ATTTCCTCTCTCCCGCGTCT 60.685 55.000 4.92 0.00 0.00 4.18
292 293 0.249114 GATTTCCTCTCTCCCGCGTC 60.249 60.000 4.92 0.00 0.00 5.19
293 294 1.677637 GGATTTCCTCTCTCCCGCGT 61.678 60.000 4.92 0.00 0.00 6.01
294 295 1.068250 GGATTTCCTCTCTCCCGCG 59.932 63.158 0.00 0.00 0.00 6.46
295 296 1.448069 GGGATTTCCTCTCTCCCGC 59.552 63.158 0.00 0.00 39.36 6.13
297 298 0.327576 TGGGGGATTTCCTCTCTCCC 60.328 60.000 1.04 1.04 46.74 4.30
298 299 0.840617 GTGGGGGATTTCCTCTCTCC 59.159 60.000 0.00 0.00 36.78 3.71
299 300 0.840617 GGTGGGGGATTTCCTCTCTC 59.159 60.000 0.00 0.00 36.78 3.20
300 301 0.121197 TGGTGGGGGATTTCCTCTCT 59.879 55.000 0.00 0.00 36.78 3.10
301 302 0.256177 GTGGTGGGGGATTTCCTCTC 59.744 60.000 0.00 0.00 36.78 3.20
302 303 1.214992 GGTGGTGGGGGATTTCCTCT 61.215 60.000 0.00 0.00 36.78 3.69
303 304 1.306633 GGTGGTGGGGGATTTCCTC 59.693 63.158 0.00 0.00 36.22 3.71
304 305 1.467190 TGGTGGTGGGGGATTTCCT 60.467 57.895 0.00 0.00 35.95 3.36
305 306 1.304962 GTGGTGGTGGGGGATTTCC 60.305 63.158 0.00 0.00 0.00 3.13
306 307 1.304962 GGTGGTGGTGGGGGATTTC 60.305 63.158 0.00 0.00 0.00 2.17
307 308 1.451372 ATGGTGGTGGTGGGGGATTT 61.451 55.000 0.00 0.00 0.00 2.17
308 309 1.861656 ATGGTGGTGGTGGGGGATT 60.862 57.895 0.00 0.00 0.00 3.01
309 310 2.204448 ATGGTGGTGGTGGGGGAT 60.204 61.111 0.00 0.00 0.00 3.85
310 311 2.938798 GATGGTGGTGGTGGGGGA 60.939 66.667 0.00 0.00 0.00 4.81
311 312 4.424711 CGATGGTGGTGGTGGGGG 62.425 72.222 0.00 0.00 0.00 5.40
312 313 4.424711 CCGATGGTGGTGGTGGGG 62.425 72.222 0.00 0.00 0.00 4.96
340 341 4.144727 TCCTCCTCTCCCTCCGCC 62.145 72.222 0.00 0.00 0.00 6.13
341 342 2.520741 CTCCTCCTCTCCCTCCGC 60.521 72.222 0.00 0.00 0.00 5.54
342 343 2.197324 CCTCCTCCTCTCCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
343 344 2.015726 TCCCTCCTCCTCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
344 345 1.541672 CTCCCTCCTCCTCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
345 346 2.710826 GCTCCCTCCTCCTCTCCCT 61.711 68.421 0.00 0.00 0.00 4.20
346 347 2.123033 GCTCCCTCCTCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
347 348 2.520741 CGCTCCCTCCTCCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
348 349 3.223589 GCGCTCCCTCCTCCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
372 373 4.078516 AACCCTACCCGCTGACGC 62.079 66.667 0.00 0.00 38.22 5.19
373 374 2.183555 GAACCCTACCCGCTGACG 59.816 66.667 0.00 0.00 39.67 4.35
374 375 1.218316 CAGAACCCTACCCGCTGAC 59.782 63.158 0.00 0.00 0.00 3.51
375 376 1.987855 CCAGAACCCTACCCGCTGA 60.988 63.158 0.00 0.00 0.00 4.26
376 377 2.584608 CCAGAACCCTACCCGCTG 59.415 66.667 0.00 0.00 0.00 5.18
377 378 2.687566 CCCAGAACCCTACCCGCT 60.688 66.667 0.00 0.00 0.00 5.52
378 379 4.484872 GCCCAGAACCCTACCCGC 62.485 72.222 0.00 0.00 0.00 6.13
379 380 2.687566 AGCCCAGAACCCTACCCG 60.688 66.667 0.00 0.00 0.00 5.28
380 381 2.376165 GGAGCCCAGAACCCTACCC 61.376 68.421 0.00 0.00 0.00 3.69
381 382 2.732619 CGGAGCCCAGAACCCTACC 61.733 68.421 0.00 0.00 0.00 3.18
382 383 2.901042 CGGAGCCCAGAACCCTAC 59.099 66.667 0.00 0.00 0.00 3.18
423 424 4.796231 CTTCTGACCCCCGCGTCG 62.796 72.222 4.92 0.00 35.40 5.12
424 425 4.452733 CCTTCTGACCCCCGCGTC 62.453 72.222 4.92 0.00 0.00 5.19
426 427 4.148825 CTCCTTCTGACCCCCGCG 62.149 72.222 0.00 0.00 0.00 6.46
427 428 4.475135 GCTCCTTCTGACCCCCGC 62.475 72.222 0.00 0.00 0.00 6.13
428 429 2.685380 AGCTCCTTCTGACCCCCG 60.685 66.667 0.00 0.00 0.00 5.73
429 430 0.912006 AAGAGCTCCTTCTGACCCCC 60.912 60.000 10.93 0.00 0.00 5.40
430 431 0.988063 AAAGAGCTCCTTCTGACCCC 59.012 55.000 10.93 0.00 33.02 4.95
431 432 2.869101 AAAAGAGCTCCTTCTGACCC 57.131 50.000 10.93 0.00 33.02 4.46
449 450 4.011698 GACCTTTATACTCCCCGCAAAAA 58.988 43.478 0.00 0.00 0.00 1.94
450 451 3.613030 GACCTTTATACTCCCCGCAAAA 58.387 45.455 0.00 0.00 0.00 2.44
451 452 2.419021 CGACCTTTATACTCCCCGCAAA 60.419 50.000 0.00 0.00 0.00 3.68
452 453 1.137479 CGACCTTTATACTCCCCGCAA 59.863 52.381 0.00 0.00 0.00 4.85
453 454 0.748450 CGACCTTTATACTCCCCGCA 59.252 55.000 0.00 0.00 0.00 5.69
511 512 5.205565 GCGGTAAAAATGCAGCTTATACTC 58.794 41.667 0.00 0.00 0.00 2.59
519 520 2.027926 CGAATTGCGGTAAAAATGCAGC 59.972 45.455 0.00 0.00 40.15 5.25
530 531 0.531974 ACTGTGACACGAATTGCGGT 60.532 50.000 0.22 0.00 46.49 5.68
531 532 0.586319 AACTGTGACACGAATTGCGG 59.414 50.000 0.22 0.00 46.49 5.69
533 534 1.268488 TGCAACTGTGACACGAATTGC 60.268 47.619 23.82 23.82 42.13 3.56
534 535 2.375110 GTGCAACTGTGACACGAATTG 58.625 47.619 0.22 6.52 0.00 2.32
535 536 2.755836 GTGCAACTGTGACACGAATT 57.244 45.000 0.22 0.00 0.00 2.17
572 573 4.966168 TGGTATTATGTGCAAGGTCTAGGA 59.034 41.667 0.00 0.00 0.00 2.94
575 576 4.444306 GGCTGGTATTATGTGCAAGGTCTA 60.444 45.833 0.00 0.00 0.00 2.59
734 738 7.396907 TGATTGGGTTGTATTGATGTCAAGATT 59.603 33.333 1.65 0.00 39.47 2.40
748 752 3.248024 AGTGAGAGGTGATTGGGTTGTA 58.752 45.455 0.00 0.00 0.00 2.41
781 785 3.947834 GCACTTGTGGCTATGGATAACTT 59.052 43.478 2.81 0.00 0.00 2.66
813 817 3.818787 GCCATTGGTGCAGCGAGG 61.819 66.667 12.16 11.47 0.00 4.63
835 839 4.000988 GGACAGAAAGAAATCGGTAGCAA 58.999 43.478 0.00 0.00 0.00 3.91
836 840 3.007506 TGGACAGAAAGAAATCGGTAGCA 59.992 43.478 0.00 0.00 0.00 3.49
866 870 1.023502 GGACGGAGGTAGTAGCTGAC 58.976 60.000 6.60 0.00 0.00 3.51
868 872 0.395311 TGGGACGGAGGTAGTAGCTG 60.395 60.000 6.60 0.00 0.00 4.24
869 873 0.556747 ATGGGACGGAGGTAGTAGCT 59.443 55.000 0.36 0.36 0.00 3.32
870 874 2.283145 TATGGGACGGAGGTAGTAGC 57.717 55.000 0.00 0.00 0.00 3.58
872 876 7.932134 TCTTATATTATGGGACGGAGGTAGTA 58.068 38.462 0.00 0.00 0.00 1.82
873 877 6.797707 TCTTATATTATGGGACGGAGGTAGT 58.202 40.000 0.00 0.00 0.00 2.73
875 879 6.151648 CGTTCTTATATTATGGGACGGAGGTA 59.848 42.308 0.00 0.00 0.00 3.08
876 880 5.047519 CGTTCTTATATTATGGGACGGAGGT 60.048 44.000 0.00 0.00 0.00 3.85
877 881 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
878 882 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
879 883 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
880 884 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
881 885 7.790673 CGAAAAACGTTCTTATATTATGGGACG 59.209 37.037 0.00 9.33 37.22 4.79
882 886 8.819974 TCGAAAAACGTTCTTATATTATGGGAC 58.180 33.333 0.00 0.00 43.13 4.46
883 887 8.945481 TCGAAAAACGTTCTTATATTATGGGA 57.055 30.769 0.00 0.00 43.13 4.37
884 888 7.797123 GCTCGAAAAACGTTCTTATATTATGGG 59.203 37.037 0.00 0.00 43.13 4.00
885 889 8.548721 AGCTCGAAAAACGTTCTTATATTATGG 58.451 33.333 0.00 0.00 43.13 2.74
893 897 9.793252 ACTATATTAGCTCGAAAAACGTTCTTA 57.207 29.630 0.00 0.00 43.13 2.10
894 898 8.699283 ACTATATTAGCTCGAAAAACGTTCTT 57.301 30.769 0.00 0.00 43.13 2.52
895 899 8.699283 AACTATATTAGCTCGAAAAACGTTCT 57.301 30.769 0.00 0.00 43.13 3.01
896 900 9.195831 CAAACTATATTAGCTCGAAAAACGTTC 57.804 33.333 0.00 0.00 43.13 3.95
897 901 8.928733 TCAAACTATATTAGCTCGAAAAACGTT 58.071 29.630 0.00 0.00 43.13 3.99
898 902 8.470040 TCAAACTATATTAGCTCGAAAAACGT 57.530 30.769 0.00 0.00 43.13 3.99
899 903 8.804743 TCTCAAACTATATTAGCTCGAAAAACG 58.195 33.333 0.00 0.00 44.09 3.60
904 908 9.817809 ACATTTCTCAAACTATATTAGCTCGAA 57.182 29.630 0.00 0.00 0.00 3.71
905 909 9.817809 AACATTTCTCAAACTATATTAGCTCGA 57.182 29.630 0.00 0.00 0.00 4.04
925 929 9.799106 CCTCTGTCCCATAATATAAGAACATTT 57.201 33.333 0.00 0.00 0.00 2.32
926 930 8.386264 CCCTCTGTCCCATAATATAAGAACATT 58.614 37.037 0.00 0.00 0.00 2.71
927 931 7.739444 TCCCTCTGTCCCATAATATAAGAACAT 59.261 37.037 0.00 0.00 0.00 2.71
928 932 7.079700 TCCCTCTGTCCCATAATATAAGAACA 58.920 38.462 0.00 0.00 0.00 3.18
929 933 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
930 934 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
931 935 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
932 936 7.147811 GCTACTCCCTCTGTCCCATAATATAAG 60.148 44.444 0.00 0.00 0.00 1.73
933 937 6.668283 GCTACTCCCTCTGTCCCATAATATAA 59.332 42.308 0.00 0.00 0.00 0.98
934 938 6.010650 AGCTACTCCCTCTGTCCCATAATATA 60.011 42.308 0.00 0.00 0.00 0.86
935 939 5.026790 GCTACTCCCTCTGTCCCATAATAT 58.973 45.833 0.00 0.00 0.00 1.28
936 940 4.108124 AGCTACTCCCTCTGTCCCATAATA 59.892 45.833 0.00 0.00 0.00 0.98
937 941 3.116551 AGCTACTCCCTCTGTCCCATAAT 60.117 47.826 0.00 0.00 0.00 1.28
938 942 2.247635 AGCTACTCCCTCTGTCCCATAA 59.752 50.000 0.00 0.00 0.00 1.90
939 943 1.860240 AGCTACTCCCTCTGTCCCATA 59.140 52.381 0.00 0.00 0.00 2.74
940 944 0.639392 AGCTACTCCCTCTGTCCCAT 59.361 55.000 0.00 0.00 0.00 4.00
941 945 0.413832 AAGCTACTCCCTCTGTCCCA 59.586 55.000 0.00 0.00 0.00 4.37
942 946 2.033372 GTAAGCTACTCCCTCTGTCCC 58.967 57.143 0.00 0.00 0.00 4.46
943 947 2.427812 GTGTAAGCTACTCCCTCTGTCC 59.572 54.545 0.00 0.00 0.00 4.02
944 948 2.427812 GGTGTAAGCTACTCCCTCTGTC 59.572 54.545 0.00 0.00 36.57 3.51
945 949 2.225293 TGGTGTAAGCTACTCCCTCTGT 60.225 50.000 10.13 0.00 40.65 3.41
946 950 2.428890 CTGGTGTAAGCTACTCCCTCTG 59.571 54.545 10.13 0.00 40.65 3.35
947 951 2.624557 CCTGGTGTAAGCTACTCCCTCT 60.625 54.545 10.13 0.00 40.65 3.69
948 952 1.757699 CCTGGTGTAAGCTACTCCCTC 59.242 57.143 10.13 0.00 40.65 4.30
949 953 1.867363 CCTGGTGTAAGCTACTCCCT 58.133 55.000 10.13 0.00 40.65 4.20
950 954 0.178301 GCCTGGTGTAAGCTACTCCC 59.822 60.000 0.00 0.39 40.65 4.30
951 955 0.902531 TGCCTGGTGTAAGCTACTCC 59.097 55.000 0.00 0.00 41.49 3.85
952 956 2.762535 TTGCCTGGTGTAAGCTACTC 57.237 50.000 0.00 0.00 33.76 2.59
953 957 2.840651 AGATTGCCTGGTGTAAGCTACT 59.159 45.455 0.00 0.00 33.31 2.57
954 958 3.198872 GAGATTGCCTGGTGTAAGCTAC 58.801 50.000 0.00 0.00 35.34 3.58
959 963 0.623723 GGGGAGATTGCCTGGTGTAA 59.376 55.000 0.00 0.00 0.00 2.41
1016 1027 2.301296 TGGCTTGAGAGAAGAGAACAGG 59.699 50.000 0.00 0.00 0.00 4.00
1202 1240 0.540923 AACTTGCTTTGCCTTTGCCA 59.459 45.000 0.00 0.00 36.33 4.92
1267 1305 3.094062 GCTCACCTGATAGCGGGCA 62.094 63.158 5.54 0.00 44.98 5.36
1308 1346 1.846439 CACCCATAGTCACCAGGGAAT 59.154 52.381 2.90 0.00 44.30 3.01
1386 1424 1.524002 CCATCGGCAGTGGATCACT 59.476 57.895 0.00 0.00 46.51 3.41
1605 1643 2.345991 GCAACGCAGTACCCCTCA 59.654 61.111 0.00 0.00 45.00 3.86
1668 1706 1.780503 AGCAAAGTGGGTCAAAGCTT 58.219 45.000 0.00 0.00 0.00 3.74
1684 1722 3.766691 GGGGTCGTCGGCTAAGCA 61.767 66.667 0.00 0.00 0.00 3.91
1768 1806 3.385755 ACAATGGCTTGAACAAAGAAGCT 59.614 39.130 0.00 0.00 43.47 3.74
1852 1890 4.844349 AGTTAGTAGTGAATGCCCATGT 57.156 40.909 0.00 0.00 0.00 3.21
1864 1902 1.067071 GCCAGGCACGAAGTTAGTAGT 60.067 52.381 6.55 0.00 41.61 2.73
1866 1904 0.970640 TGCCAGGCACGAAGTTAGTA 59.029 50.000 11.22 0.00 41.61 1.82
2035 2073 2.683768 ACAAGTAGCTAGATGGGGGAG 58.316 52.381 9.77 0.00 0.00 4.30
2040 2078 6.442952 GTGATCACTACAAGTAGCTAGATGG 58.557 44.000 18.83 0.00 36.66 3.51
2072 2110 7.489757 GCGCTGTATTGATTAAATAAACCCAAA 59.510 33.333 0.00 0.00 32.47 3.28
2090 2128 4.192000 GCAGAGTGTGCGCTGTAT 57.808 55.556 9.73 0.00 43.99 2.29
2224 2262 8.398665 GGAGCAGTTTCGAACATTTTATAAGAT 58.601 33.333 0.00 0.00 0.00 2.40
2262 2300 2.279741 TCGTGCAAAGATCAGGCATAC 58.720 47.619 8.82 0.00 40.05 2.39
2346 2385 2.557924 GGAATTGCATGGTTGACAGACA 59.442 45.455 0.00 0.00 0.00 3.41
2380 2419 5.448632 CCCTGTAACATTTTAGAATCGTGCC 60.449 44.000 0.00 0.00 0.00 5.01
2403 2442 1.351350 GGCCTCAACCATATACTCCCC 59.649 57.143 0.00 0.00 0.00 4.81
2430 2472 4.510571 AGTACAAGTATTTTGGCCTACGG 58.489 43.478 3.32 0.00 0.00 4.02
2578 2706 5.637810 CGCAGTTTTGAACAATCTCCTACTA 59.362 40.000 0.00 0.00 0.00 1.82
2804 2932 7.473735 TGGTAAATTGCTCATATTTCCAACA 57.526 32.000 0.00 0.00 0.00 3.33
2807 2935 9.585369 TCATATGGTAAATTGCTCATATTTCCA 57.415 29.630 2.13 0.00 32.43 3.53
2868 2996 9.890629 TTGCATGACTTGTTTCTCTACTATAAT 57.109 29.630 0.00 0.00 0.00 1.28
2869 2997 9.890629 ATTGCATGACTTGTTTCTCTACTATAA 57.109 29.630 0.00 0.00 0.00 0.98
2870 2998 9.534565 GATTGCATGACTTGTTTCTCTACTATA 57.465 33.333 0.00 0.00 0.00 1.31
2871 2999 8.263640 AGATTGCATGACTTGTTTCTCTACTAT 58.736 33.333 0.00 0.00 0.00 2.12
2872 3000 7.547019 CAGATTGCATGACTTGTTTCTCTACTA 59.453 37.037 0.00 0.00 0.00 1.82
2873 3001 6.370994 CAGATTGCATGACTTGTTTCTCTACT 59.629 38.462 0.00 0.00 0.00 2.57
2874 3002 6.369890 TCAGATTGCATGACTTGTTTCTCTAC 59.630 38.462 0.00 0.00 0.00 2.59
2875 3003 6.369890 GTCAGATTGCATGACTTGTTTCTCTA 59.630 38.462 10.94 0.00 43.03 2.43
2876 3004 5.180868 GTCAGATTGCATGACTTGTTTCTCT 59.819 40.000 10.94 0.00 43.03 3.10
2877 3005 5.049198 TGTCAGATTGCATGACTTGTTTCTC 60.049 40.000 17.40 0.00 45.87 2.87
2878 3006 4.823442 TGTCAGATTGCATGACTTGTTTCT 59.177 37.500 17.40 0.00 45.87 2.52
2879 3007 5.112220 TGTCAGATTGCATGACTTGTTTC 57.888 39.130 17.40 0.00 45.87 2.78
2880 3008 4.581824 ACTGTCAGATTGCATGACTTGTTT 59.418 37.500 17.40 0.00 45.87 2.83
2881 3009 4.023450 CACTGTCAGATTGCATGACTTGTT 60.023 41.667 17.40 0.23 45.87 2.83
2882 3010 3.501062 CACTGTCAGATTGCATGACTTGT 59.499 43.478 17.40 13.48 45.87 3.16
2883 3011 3.749609 TCACTGTCAGATTGCATGACTTG 59.250 43.478 17.40 14.27 45.87 3.16
2884 3012 4.001652 CTCACTGTCAGATTGCATGACTT 58.998 43.478 17.40 4.66 45.87 3.01
2885 3013 3.260128 TCTCACTGTCAGATTGCATGACT 59.740 43.478 17.40 1.86 45.87 3.41
2886 3014 3.593096 TCTCACTGTCAGATTGCATGAC 58.407 45.455 6.91 11.24 45.88 3.06
2887 3015 3.967332 TCTCACTGTCAGATTGCATGA 57.033 42.857 6.91 0.00 0.00 3.07
2888 3016 3.374367 CCTTCTCACTGTCAGATTGCATG 59.626 47.826 6.91 0.00 0.00 4.06
2889 3017 3.008813 ACCTTCTCACTGTCAGATTGCAT 59.991 43.478 6.91 0.00 0.00 3.96
2890 3018 2.369860 ACCTTCTCACTGTCAGATTGCA 59.630 45.455 6.91 0.00 0.00 4.08
2891 3019 3.051081 ACCTTCTCACTGTCAGATTGC 57.949 47.619 6.91 0.00 0.00 3.56
2892 3020 7.010923 GCTATTTACCTTCTCACTGTCAGATTG 59.989 40.741 6.91 0.00 0.00 2.67
2893 3021 7.044798 GCTATTTACCTTCTCACTGTCAGATT 58.955 38.462 6.91 0.00 0.00 2.40
2894 3022 6.155221 TGCTATTTACCTTCTCACTGTCAGAT 59.845 38.462 6.91 0.00 0.00 2.90
2895 3023 5.480422 TGCTATTTACCTTCTCACTGTCAGA 59.520 40.000 6.91 0.00 0.00 3.27
2896 3024 5.724328 TGCTATTTACCTTCTCACTGTCAG 58.276 41.667 0.00 0.00 0.00 3.51
2897 3025 5.738619 TGCTATTTACCTTCTCACTGTCA 57.261 39.130 0.00 0.00 0.00 3.58
2898 3026 6.478344 CAGATGCTATTTACCTTCTCACTGTC 59.522 42.308 0.00 0.00 0.00 3.51
2899 3027 6.344500 CAGATGCTATTTACCTTCTCACTGT 58.656 40.000 0.00 0.00 0.00 3.55
2900 3028 5.236047 GCAGATGCTATTTACCTTCTCACTG 59.764 44.000 0.00 0.00 38.21 3.66
2901 3029 5.104776 TGCAGATGCTATTTACCTTCTCACT 60.105 40.000 6.35 0.00 42.66 3.41
2902 3030 5.118990 TGCAGATGCTATTTACCTTCTCAC 58.881 41.667 6.35 0.00 42.66 3.51
2903 3031 5.357742 TGCAGATGCTATTTACCTTCTCA 57.642 39.130 6.35 0.00 42.66 3.27
2904 3032 6.683974 TTTGCAGATGCTATTTACCTTCTC 57.316 37.500 6.35 0.00 42.66 2.87
2905 3033 8.790718 CATATTTGCAGATGCTATTTACCTTCT 58.209 33.333 6.35 0.00 42.66 2.85
2906 3034 8.786898 TCATATTTGCAGATGCTATTTACCTTC 58.213 33.333 6.35 0.00 42.66 3.46
2907 3035 8.696043 TCATATTTGCAGATGCTATTTACCTT 57.304 30.769 6.35 0.00 42.66 3.50
2908 3036 8.571336 GTTCATATTTGCAGATGCTATTTACCT 58.429 33.333 6.35 0.00 42.66 3.08
2909 3037 8.571336 AGTTCATATTTGCAGATGCTATTTACC 58.429 33.333 6.35 0.00 42.66 2.85
2910 3038 9.390795 CAGTTCATATTTGCAGATGCTATTTAC 57.609 33.333 6.35 0.00 42.66 2.01
2911 3039 9.123902 ACAGTTCATATTTGCAGATGCTATTTA 57.876 29.630 6.35 0.00 42.66 1.40
2912 3040 8.004087 ACAGTTCATATTTGCAGATGCTATTT 57.996 30.769 6.35 0.00 42.66 1.40
2913 3041 7.578310 ACAGTTCATATTTGCAGATGCTATT 57.422 32.000 6.35 0.00 42.66 1.73
2914 3042 8.562892 GTTACAGTTCATATTTGCAGATGCTAT 58.437 33.333 6.35 2.75 42.66 2.97
2915 3043 7.012327 GGTTACAGTTCATATTTGCAGATGCTA 59.988 37.037 6.35 0.00 42.66 3.49
2916 3044 6.183360 GGTTACAGTTCATATTTGCAGATGCT 60.183 38.462 6.35 0.00 42.66 3.79
2917 3045 5.973565 GGTTACAGTTCATATTTGCAGATGC 59.026 40.000 0.00 0.00 42.50 3.91
2918 3046 7.087409 TGGTTACAGTTCATATTTGCAGATG 57.913 36.000 0.00 0.00 0.00 2.90
2919 3047 7.629222 GCTTGGTTACAGTTCATATTTGCAGAT 60.629 37.037 0.00 0.00 0.00 2.90
2920 3048 6.349280 GCTTGGTTACAGTTCATATTTGCAGA 60.349 38.462 0.00 0.00 0.00 4.26
2921 3049 5.801947 GCTTGGTTACAGTTCATATTTGCAG 59.198 40.000 0.00 0.00 0.00 4.41
2922 3050 5.242615 TGCTTGGTTACAGTTCATATTTGCA 59.757 36.000 0.00 0.00 0.00 4.08
2923 3051 5.708948 TGCTTGGTTACAGTTCATATTTGC 58.291 37.500 0.00 0.00 0.00 3.68
2924 3052 9.669353 GATATGCTTGGTTACAGTTCATATTTG 57.331 33.333 0.00 0.00 31.22 2.32
2925 3053 9.632638 AGATATGCTTGGTTACAGTTCATATTT 57.367 29.630 0.00 0.00 31.22 1.40
2927 3055 9.935241 CTAGATATGCTTGGTTACAGTTCATAT 57.065 33.333 0.00 0.00 32.45 1.78
2928 3056 9.143155 TCTAGATATGCTTGGTTACAGTTCATA 57.857 33.333 0.00 0.00 0.00 2.15
2929 3057 8.023021 TCTAGATATGCTTGGTTACAGTTCAT 57.977 34.615 0.00 0.00 0.00 2.57
2930 3058 7.418337 TCTAGATATGCTTGGTTACAGTTCA 57.582 36.000 0.00 0.00 0.00 3.18
2931 3059 6.422400 GCTCTAGATATGCTTGGTTACAGTTC 59.578 42.308 0.00 0.00 0.00 3.01
2932 3060 6.127054 TGCTCTAGATATGCTTGGTTACAGTT 60.127 38.462 0.00 0.00 0.00 3.16
2933 3061 5.363868 TGCTCTAGATATGCTTGGTTACAGT 59.636 40.000 0.00 0.00 0.00 3.55
2934 3062 5.847304 TGCTCTAGATATGCTTGGTTACAG 58.153 41.667 0.00 0.00 0.00 2.74
2935 3063 5.598417 TCTGCTCTAGATATGCTTGGTTACA 59.402 40.000 0.00 0.00 0.00 2.41
2936 3064 5.923684 GTCTGCTCTAGATATGCTTGGTTAC 59.076 44.000 0.00 0.00 37.83 2.50
2937 3065 5.598417 TGTCTGCTCTAGATATGCTTGGTTA 59.402 40.000 0.00 0.00 37.83 2.85
2938 3066 4.406972 TGTCTGCTCTAGATATGCTTGGTT 59.593 41.667 0.00 0.00 37.83 3.67
2939 3067 3.963374 TGTCTGCTCTAGATATGCTTGGT 59.037 43.478 0.00 0.00 37.83 3.67
2940 3068 4.039004 ACTGTCTGCTCTAGATATGCTTGG 59.961 45.833 0.00 0.00 37.83 3.61
2941 3069 5.199024 ACTGTCTGCTCTAGATATGCTTG 57.801 43.478 0.00 0.00 37.83 4.01
2942 3070 6.303054 TCTACTGTCTGCTCTAGATATGCTT 58.697 40.000 0.00 0.00 37.83 3.91
2943 3071 5.875224 TCTACTGTCTGCTCTAGATATGCT 58.125 41.667 0.00 0.00 37.83 3.79
2944 3072 5.391950 GCTCTACTGTCTGCTCTAGATATGC 60.392 48.000 0.00 0.00 37.83 3.14
2945 3073 5.704978 TGCTCTACTGTCTGCTCTAGATATG 59.295 44.000 0.00 0.00 37.83 1.78
2946 3074 5.875224 TGCTCTACTGTCTGCTCTAGATAT 58.125 41.667 0.00 0.00 37.83 1.63
2947 3075 5.297569 TGCTCTACTGTCTGCTCTAGATA 57.702 43.478 0.00 0.00 37.83 1.98
2948 3076 4.163441 TGCTCTACTGTCTGCTCTAGAT 57.837 45.455 0.00 0.00 37.83 1.98
2949 3077 3.636153 TGCTCTACTGTCTGCTCTAGA 57.364 47.619 0.00 0.00 0.00 2.43
2950 3078 3.694072 AGTTGCTCTACTGTCTGCTCTAG 59.306 47.826 0.00 0.00 0.00 2.43
2951 3079 3.691575 AGTTGCTCTACTGTCTGCTCTA 58.308 45.455 0.00 0.00 0.00 2.43
2952 3080 2.524306 AGTTGCTCTACTGTCTGCTCT 58.476 47.619 0.00 0.00 0.00 4.09
2953 3081 2.992543 CAAGTTGCTCTACTGTCTGCTC 59.007 50.000 0.00 0.00 0.00 4.26
2954 3082 2.289320 CCAAGTTGCTCTACTGTCTGCT 60.289 50.000 0.00 0.00 0.00 4.24
2955 3083 2.072298 CCAAGTTGCTCTACTGTCTGC 58.928 52.381 0.00 0.00 0.00 4.26
2956 3084 3.667497 TCCAAGTTGCTCTACTGTCTG 57.333 47.619 0.00 0.00 0.00 3.51
2957 3085 7.507277 TCATATATCCAAGTTGCTCTACTGTCT 59.493 37.037 0.00 0.00 0.00 3.41
2958 3086 7.661968 TCATATATCCAAGTTGCTCTACTGTC 58.338 38.462 0.00 0.00 0.00 3.51
2959 3087 7.603180 TCATATATCCAAGTTGCTCTACTGT 57.397 36.000 0.00 0.00 0.00 3.55
2960 3088 8.147058 ACTTCATATATCCAAGTTGCTCTACTG 58.853 37.037 0.00 0.00 0.00 2.74
2961 3089 8.256356 ACTTCATATATCCAAGTTGCTCTACT 57.744 34.615 0.00 0.00 0.00 2.57
2962 3090 9.632807 CTACTTCATATATCCAAGTTGCTCTAC 57.367 37.037 10.53 0.00 32.56 2.59
2963 3091 9.588096 TCTACTTCATATATCCAAGTTGCTCTA 57.412 33.333 10.53 0.00 32.56 2.43
2964 3092 8.484214 TCTACTTCATATATCCAAGTTGCTCT 57.516 34.615 10.53 0.00 32.56 4.09
2965 3093 8.983724 GTTCTACTTCATATATCCAAGTTGCTC 58.016 37.037 10.53 4.35 32.56 4.26
2966 3094 7.934120 GGTTCTACTTCATATATCCAAGTTGCT 59.066 37.037 10.53 0.00 32.56 3.91
2967 3095 7.934120 AGGTTCTACTTCATATATCCAAGTTGC 59.066 37.037 10.53 1.05 32.56 4.17
2980 3108 9.261035 CCCTACATATGATAGGTTCTACTTCAT 57.739 37.037 20.62 0.00 38.03 2.57
2981 3109 7.178628 GCCCTACATATGATAGGTTCTACTTCA 59.821 40.741 20.62 0.00 38.03 3.02
2982 3110 7.178628 TGCCCTACATATGATAGGTTCTACTTC 59.821 40.741 20.62 7.84 38.03 3.01
2983 3111 7.016914 TGCCCTACATATGATAGGTTCTACTT 58.983 38.462 20.62 0.00 38.03 2.24
2984 3112 6.562228 TGCCCTACATATGATAGGTTCTACT 58.438 40.000 20.62 0.00 38.03 2.57
2985 3113 6.663953 TCTGCCCTACATATGATAGGTTCTAC 59.336 42.308 20.62 11.05 38.03 2.59
2986 3114 6.663953 GTCTGCCCTACATATGATAGGTTCTA 59.336 42.308 20.62 8.67 38.03 2.10
2987 3115 5.482175 GTCTGCCCTACATATGATAGGTTCT 59.518 44.000 20.62 0.00 38.03 3.01
2988 3116 5.246203 TGTCTGCCCTACATATGATAGGTTC 59.754 44.000 20.62 15.29 38.03 3.62
2989 3117 5.012148 GTGTCTGCCCTACATATGATAGGTT 59.988 44.000 20.62 0.20 38.03 3.50
2990 3118 4.528596 GTGTCTGCCCTACATATGATAGGT 59.471 45.833 20.62 0.00 38.03 3.08
2991 3119 4.774726 AGTGTCTGCCCTACATATGATAGG 59.225 45.833 10.38 15.21 39.25 2.57
2992 3120 5.991933 AGTGTCTGCCCTACATATGATAG 57.008 43.478 10.38 7.43 0.00 2.08
2993 3121 6.790319 TCTAGTGTCTGCCCTACATATGATA 58.210 40.000 10.38 0.00 0.00 2.15
2994 3122 5.645201 TCTAGTGTCTGCCCTACATATGAT 58.355 41.667 10.38 0.00 0.00 2.45
2995 3123 5.061721 TCTAGTGTCTGCCCTACATATGA 57.938 43.478 10.38 0.00 0.00 2.15
2996 3124 5.069119 TGTTCTAGTGTCTGCCCTACATATG 59.931 44.000 0.00 0.00 0.00 1.78
2997 3125 5.208890 TGTTCTAGTGTCTGCCCTACATAT 58.791 41.667 0.00 0.00 0.00 1.78
2998 3126 4.606210 TGTTCTAGTGTCTGCCCTACATA 58.394 43.478 0.00 0.00 0.00 2.29
2999 3127 3.441101 TGTTCTAGTGTCTGCCCTACAT 58.559 45.455 0.00 0.00 0.00 2.29
3000 3128 2.884320 TGTTCTAGTGTCTGCCCTACA 58.116 47.619 0.00 0.00 0.00 2.74
3001 3129 3.368531 CCTTGTTCTAGTGTCTGCCCTAC 60.369 52.174 0.00 0.00 0.00 3.18
3002 3130 2.832129 CCTTGTTCTAGTGTCTGCCCTA 59.168 50.000 0.00 0.00 0.00 3.53
3003 3131 1.625818 CCTTGTTCTAGTGTCTGCCCT 59.374 52.381 0.00 0.00 0.00 5.19
3004 3132 1.623811 TCCTTGTTCTAGTGTCTGCCC 59.376 52.381 0.00 0.00 0.00 5.36
3005 3133 3.067833 GTTCCTTGTTCTAGTGTCTGCC 58.932 50.000 0.00 0.00 0.00 4.85
3006 3134 3.743396 CAGTTCCTTGTTCTAGTGTCTGC 59.257 47.826 0.00 0.00 0.00 4.26
3007 3135 4.747108 CACAGTTCCTTGTTCTAGTGTCTG 59.253 45.833 0.00 0.00 0.00 3.51
3008 3136 4.649674 TCACAGTTCCTTGTTCTAGTGTCT 59.350 41.667 0.00 0.00 0.00 3.41
3009 3137 4.745620 GTCACAGTTCCTTGTTCTAGTGTC 59.254 45.833 0.00 0.00 0.00 3.67
3010 3138 4.161565 TGTCACAGTTCCTTGTTCTAGTGT 59.838 41.667 0.00 0.00 0.00 3.55
3011 3139 4.693283 TGTCACAGTTCCTTGTTCTAGTG 58.307 43.478 0.00 0.00 0.00 2.74
3012 3140 4.202264 CCTGTCACAGTTCCTTGTTCTAGT 60.202 45.833 3.56 0.00 0.00 2.57
3013 3141 4.039245 TCCTGTCACAGTTCCTTGTTCTAG 59.961 45.833 3.56 0.00 0.00 2.43
3014 3142 3.964688 TCCTGTCACAGTTCCTTGTTCTA 59.035 43.478 3.56 0.00 0.00 2.10
3015 3143 2.771943 TCCTGTCACAGTTCCTTGTTCT 59.228 45.455 3.56 0.00 0.00 3.01
3016 3144 3.194005 TCCTGTCACAGTTCCTTGTTC 57.806 47.619 3.56 0.00 0.00 3.18
3017 3145 3.392616 AGATCCTGTCACAGTTCCTTGTT 59.607 43.478 3.56 0.00 0.00 2.83
3018 3146 2.975489 AGATCCTGTCACAGTTCCTTGT 59.025 45.455 3.56 0.00 0.00 3.16
3019 3147 3.260380 AGAGATCCTGTCACAGTTCCTTG 59.740 47.826 3.56 0.00 0.00 3.61
3020 3148 3.515562 AGAGATCCTGTCACAGTTCCTT 58.484 45.455 3.56 0.00 0.00 3.36
3021 3149 3.182887 AGAGATCCTGTCACAGTTCCT 57.817 47.619 3.56 0.00 0.00 3.36
3022 3150 4.220821 TGTTAGAGATCCTGTCACAGTTCC 59.779 45.833 3.56 0.00 0.00 3.62
3023 3151 5.392767 TGTTAGAGATCCTGTCACAGTTC 57.607 43.478 3.56 0.33 0.00 3.01
3024 3152 5.808366 TTGTTAGAGATCCTGTCACAGTT 57.192 39.130 3.56 0.00 0.00 3.16
3025 3153 5.808366 TTTGTTAGAGATCCTGTCACAGT 57.192 39.130 3.56 0.00 0.00 3.55
3026 3154 6.931281 TCTTTTTGTTAGAGATCCTGTCACAG 59.069 38.462 0.00 0.00 0.00 3.66
3027 3155 6.826668 TCTTTTTGTTAGAGATCCTGTCACA 58.173 36.000 0.00 0.00 0.00 3.58
3028 3156 6.128418 GCTCTTTTTGTTAGAGATCCTGTCAC 60.128 42.308 4.16 0.00 41.32 3.67
3029 3157 5.934625 GCTCTTTTTGTTAGAGATCCTGTCA 59.065 40.000 4.16 0.00 41.32 3.58
3030 3158 5.934625 TGCTCTTTTTGTTAGAGATCCTGTC 59.065 40.000 4.16 0.00 41.32 3.51
3031 3159 5.869579 TGCTCTTTTTGTTAGAGATCCTGT 58.130 37.500 4.16 0.00 41.32 4.00
3032 3160 6.652481 TCTTGCTCTTTTTGTTAGAGATCCTG 59.348 38.462 4.16 0.00 41.32 3.86
3033 3161 6.773638 TCTTGCTCTTTTTGTTAGAGATCCT 58.226 36.000 4.16 0.00 41.32 3.24
3034 3162 7.041098 TGTTCTTGCTCTTTTTGTTAGAGATCC 60.041 37.037 4.16 0.00 41.32 3.36
3035 3163 7.800847 GTGTTCTTGCTCTTTTTGTTAGAGATC 59.199 37.037 4.16 0.00 41.32 2.75
3036 3164 7.500559 AGTGTTCTTGCTCTTTTTGTTAGAGAT 59.499 33.333 4.16 0.00 41.32 2.75
3037 3165 6.823689 AGTGTTCTTGCTCTTTTTGTTAGAGA 59.176 34.615 4.16 0.00 41.32 3.10
3038 3166 7.020914 AGTGTTCTTGCTCTTTTTGTTAGAG 57.979 36.000 0.00 0.00 41.64 2.43
3039 3167 7.391148 AAGTGTTCTTGCTCTTTTTGTTAGA 57.609 32.000 0.00 0.00 32.09 2.10
3040 3168 7.373441 CGTAAGTGTTCTTGCTCTTTTTGTTAG 59.627 37.037 0.00 0.00 34.84 2.34
3041 3169 7.184106 CGTAAGTGTTCTTGCTCTTTTTGTTA 58.816 34.615 0.00 0.00 34.84 2.41
3042 3170 6.027749 CGTAAGTGTTCTTGCTCTTTTTGTT 58.972 36.000 0.00 0.00 34.84 2.83
3043 3171 5.448632 CCGTAAGTGTTCTTGCTCTTTTTGT 60.449 40.000 0.00 0.00 34.84 2.83
3044 3172 4.970003 CCGTAAGTGTTCTTGCTCTTTTTG 59.030 41.667 0.00 0.00 34.84 2.44
3045 3173 4.036380 CCCGTAAGTGTTCTTGCTCTTTTT 59.964 41.667 0.00 0.00 34.84 1.94
3046 3174 3.564225 CCCGTAAGTGTTCTTGCTCTTTT 59.436 43.478 0.00 0.00 34.84 2.27
3047 3175 3.139077 CCCGTAAGTGTTCTTGCTCTTT 58.861 45.455 0.00 0.00 34.84 2.52
3048 3176 2.550208 CCCCGTAAGTGTTCTTGCTCTT 60.550 50.000 0.00 0.00 34.84 2.85
3049 3177 1.002087 CCCCGTAAGTGTTCTTGCTCT 59.998 52.381 0.00 0.00 34.84 4.09
3050 3178 1.439679 CCCCGTAAGTGTTCTTGCTC 58.560 55.000 0.00 0.00 34.84 4.26
3051 3179 0.605589 GCCCCGTAAGTGTTCTTGCT 60.606 55.000 0.00 0.00 34.84 3.91
3052 3180 0.887387 TGCCCCGTAAGTGTTCTTGC 60.887 55.000 0.00 0.00 35.36 4.01
3053 3181 1.156736 CTGCCCCGTAAGTGTTCTTG 58.843 55.000 0.00 0.00 35.36 3.02
3054 3182 0.605589 GCTGCCCCGTAAGTGTTCTT 60.606 55.000 0.00 0.00 37.65 2.52
3055 3183 1.003718 GCTGCCCCGTAAGTGTTCT 60.004 57.895 0.00 0.00 0.00 3.01
3056 3184 1.298859 CTGCTGCCCCGTAAGTGTTC 61.299 60.000 0.00 0.00 0.00 3.18
3057 3185 1.302511 CTGCTGCCCCGTAAGTGTT 60.303 57.895 0.00 0.00 0.00 3.32
3058 3186 1.764571 TTCTGCTGCCCCGTAAGTGT 61.765 55.000 0.00 0.00 0.00 3.55
3059 3187 1.003839 TTCTGCTGCCCCGTAAGTG 60.004 57.895 0.00 0.00 0.00 3.16
3060 3188 1.296715 CTTCTGCTGCCCCGTAAGT 59.703 57.895 0.00 0.00 0.00 2.24
3061 3189 2.109126 GCTTCTGCTGCCCCGTAAG 61.109 63.158 0.00 0.00 36.03 2.34
3062 3190 2.046314 GCTTCTGCTGCCCCGTAA 60.046 61.111 0.00 0.00 36.03 3.18
3063 3191 3.318384 TGCTTCTGCTGCCCCGTA 61.318 61.111 0.00 0.00 40.48 4.02
3065 3193 4.711949 AGTGCTTCTGCTGCCCCG 62.712 66.667 0.00 0.00 40.48 5.73
3066 3194 3.060615 CAGTGCTTCTGCTGCCCC 61.061 66.667 0.00 0.00 40.48 5.80
3067 3195 3.060615 CCAGTGCTTCTGCTGCCC 61.061 66.667 0.00 0.00 42.38 5.36
3068 3196 2.033141 TCCAGTGCTTCTGCTGCC 59.967 61.111 0.00 0.00 42.38 4.85
3069 3197 0.888285 AAGTCCAGTGCTTCTGCTGC 60.888 55.000 0.00 0.00 42.38 5.25
3070 3198 0.873054 CAAGTCCAGTGCTTCTGCTG 59.127 55.000 4.40 0.00 42.38 4.41
3071 3199 3.319135 CAAGTCCAGTGCTTCTGCT 57.681 52.632 4.40 0.00 42.38 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.