Multiple sequence alignment - TraesCS7D01G199300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G199300 chr7D 100.000 5479 0 0 3341 8819 156449556 156455034 0.000000e+00 10118.0
1 TraesCS7D01G199300 chr7D 100.000 3026 0 0 1 3026 156446216 156449241 0.000000e+00 5589.0
2 TraesCS7D01G199300 chr7D 97.959 245 5 0 1814 2058 612840470 612840714 8.180000e-115 425.0
3 TraesCS7D01G199300 chr7D 97.177 248 7 0 1816 2063 127990547 127990300 3.810000e-113 420.0
4 TraesCS7D01G199300 chr7A 96.354 4854 140 13 3341 8182 211203986 211208814 0.000000e+00 7949.0
5 TraesCS7D01G199300 chr7A 96.099 974 35 1 2056 3026 211202936 211203909 0.000000e+00 1585.0
6 TraesCS7D01G199300 chr7A 94.237 885 42 8 828 1710 211201925 211202802 0.000000e+00 1343.0
7 TraesCS7D01G199300 chr7A 91.230 764 62 3 41 799 211201193 211201956 0.000000e+00 1035.0
8 TraesCS7D01G199300 chr7A 94.199 362 20 1 8458 8819 211211307 211211667 1.290000e-152 551.0
9 TraesCS7D01G199300 chr7A 91.135 282 15 3 8181 8461 211208900 211209172 3.010000e-99 374.0
10 TraesCS7D01G199300 chr7A 96.000 125 3 1 1696 1820 211202817 211202939 1.500000e-47 202.0
11 TraesCS7D01G199300 chr7B 95.955 3634 95 19 3341 6963 118815648 118819240 0.000000e+00 5849.0
12 TraesCS7D01G199300 chr7B 94.397 1160 29 14 7027 8182 118819236 118820363 0.000000e+00 1749.0
13 TraesCS7D01G199300 chr7B 94.559 974 46 3 2056 3026 118814616 118815585 0.000000e+00 1498.0
14 TraesCS7D01G199300 chr7B 92.388 867 49 12 792 1657 118813663 118814513 0.000000e+00 1219.0
15 TraesCS7D01G199300 chr7B 91.108 641 32 9 8181 8819 118820434 118821051 0.000000e+00 845.0
16 TraesCS7D01G199300 chr7B 95.327 107 3 1 1714 1820 118814515 118814619 1.520000e-37 169.0
17 TraesCS7D01G199300 chr7B 82.667 150 23 3 8534 8682 678652088 678651941 7.190000e-26 130.0
18 TraesCS7D01G199300 chr4D 98.347 242 4 0 1816 2057 111717971 111718212 8.180000e-115 425.0
19 TraesCS7D01G199300 chr4D 97.934 242 5 0 1816 2057 32130002 32130243 3.810000e-113 420.0
20 TraesCS7D01G199300 chr4D 97.934 242 5 0 1816 2057 368597787 368598028 3.810000e-113 420.0
21 TraesCS7D01G199300 chr6B 95.785 261 9 2 1805 2065 142811458 142811716 3.810000e-113 420.0
22 TraesCS7D01G199300 chr2D 97.934 242 5 0 1816 2057 517722278 517722519 3.810000e-113 420.0
23 TraesCS7D01G199300 chr2D 84.354 147 20 2 8529 8674 367824390 367824534 3.320000e-29 141.0
24 TraesCS7D01G199300 chr2D 80.851 94 16 2 1542 1634 458159864 458159956 1.230000e-08 73.1
25 TraesCS7D01G199300 chr1D 97.177 248 7 0 1816 2063 473451481 473451728 3.810000e-113 420.0
26 TraesCS7D01G199300 chr1D 82.119 151 22 4 8534 8682 425453606 425453753 3.340000e-24 124.0
27 TraesCS7D01G199300 chr1D 81.457 151 23 4 8534 8682 396978344 396978197 1.560000e-22 119.0
28 TraesCS7D01G199300 chr1A 97.166 247 6 1 1811 2057 33962521 33962276 4.930000e-112 416.0
29 TraesCS7D01G199300 chr3D 83.784 148 23 1 8535 8682 82134592 82134738 1.190000e-28 139.0
30 TraesCS7D01G199300 chr3D 82.639 144 20 4 8533 8674 325622741 325622601 1.200000e-23 122.0
31 TraesCS7D01G199300 chr3B 84.247 146 20 3 8530 8674 309002449 309002592 1.190000e-28 139.0
32 TraesCS7D01G199300 chr2A 76.351 296 42 17 885 1155 71593406 71593114 5.550000e-27 134.0
33 TraesCS7D01G199300 chr2A 82.895 76 12 1 1542 1617 601710556 601710630 5.710000e-07 67.6
34 TraesCS7D01G199300 chr5A 88.679 53 4 2 1565 1615 230548175 230548123 7.390000e-06 63.9
35 TraesCS7D01G199300 chr5A 88.679 53 4 2 1565 1615 230549638 230549586 7.390000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G199300 chr7D 156446216 156455034 8818 False 7853.500000 10118 100.000000 1 8819 2 chr7D.!!$F2 8818
1 TraesCS7D01G199300 chr7A 211201193 211211667 10474 False 1862.714286 7949 94.179143 41 8819 7 chr7A.!!$F1 8778
2 TraesCS7D01G199300 chr7B 118813663 118821051 7388 False 1888.166667 5849 93.955667 792 8819 6 chr7B.!!$F1 8027

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 303 0.244994 GACTCGGACTGCAGTGTCAT 59.755 55.000 27.27 5.43 38.61 3.06 F
1068 1074 0.326238 TCTACCCACACATCTCCCCC 60.326 60.000 0.00 0.00 0.00 5.40 F
1191 1197 0.460987 CCAGTCAGTCGAGCCAATCC 60.461 60.000 0.00 0.00 0.00 3.01 F
1858 1894 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71 F
1859 1895 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04 F
3393 3435 0.940126 GAACATGCTATGAGGTGCCG 59.060 55.000 0.00 0.00 0.00 5.69 F
4997 5042 1.209504 GGCATTAGGTAGTGCTGGTGA 59.790 52.381 4.70 0.00 38.74 4.02 F
5385 5430 0.324943 CGGGTGGTCAAGTTGGAGAT 59.675 55.000 2.34 0.00 0.00 2.75 F
6196 6261 1.676006 CTTGTGGCTTTTGACCGTCTT 59.324 47.619 0.00 0.00 0.00 3.01 F
6238 6303 2.106857 TCGGCCCCTTACAGAAAAAGAA 59.893 45.455 0.00 0.00 0.00 2.52 F
7695 7771 0.248094 GGATAGCGAAACTTTGCGGC 60.248 55.000 0.00 0.00 42.47 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1717 0.179081 CTACCCGCTAGTTTGGAGGC 60.179 60.000 0.00 0.00 0.00 4.70 R
2916 2958 0.108615 CCTGGCCGACTACTCAACAG 60.109 60.000 0.00 0.00 0.00 3.16 R
2986 3028 1.152355 CCCCAGGCTGGTTTTGGAA 60.152 57.895 30.68 0.00 35.17 3.53 R
3393 3435 2.505557 GCAGGAATGCTGTTGCGC 60.506 61.111 0.00 0.00 43.34 6.09 R
3439 3481 8.617761 ACAAATTTCACAAACAAAATGAATGC 57.382 26.923 0.00 0.00 32.61 3.56 R
4999 5044 0.407139 AGGCAAGGCTTGTCTCCAAT 59.593 50.000 27.77 6.63 43.25 3.16 R
6169 6234 0.527565 CAAAAGCCACAAGGGATCCG 59.472 55.000 5.45 0.00 40.01 4.18 R
7102 7177 1.134699 TCTATGGCAGACGCAAGGAAG 60.135 52.381 0.00 0.00 46.39 3.46 R
7677 7753 0.586502 CGCCGCAAAGTTTCGCTATC 60.587 55.000 7.94 0.00 0.00 2.08 R
7734 7810 0.832135 AGTTCTCTGGCTTCCGACCA 60.832 55.000 0.00 0.00 35.40 4.02 R
8657 10962 3.048337 AGGCATGCATTGAAAAAGTGG 57.952 42.857 21.36 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.429212 TCGATGTCGTGTGCCCCG 62.429 66.667 2.04 0.00 40.80 5.73
39 40 2.107750 CGACATGATCGCCCAGCT 59.892 61.111 0.00 0.00 45.52 4.24
125 126 3.762407 TTGTGAGAAGGATGGAACGAA 57.238 42.857 0.00 0.00 0.00 3.85
163 164 7.283127 TGATTTTGAGGAATAATGAGGTAGCAC 59.717 37.037 0.00 0.00 0.00 4.40
179 180 0.743097 GCACCATCTTCCATCTTGCC 59.257 55.000 0.00 0.00 0.00 4.52
207 208 4.463891 CCTTCATATTTGTTCAAGTGCCCT 59.536 41.667 0.00 0.00 0.00 5.19
208 209 5.652014 CCTTCATATTTGTTCAAGTGCCCTA 59.348 40.000 0.00 0.00 0.00 3.53
233 234 0.858583 TGAAACGACGACATGTGCAG 59.141 50.000 1.15 0.00 0.00 4.41
286 289 4.396166 ACATGGCCTTTTATCTTTGACTCG 59.604 41.667 3.32 0.00 0.00 4.18
299 302 1.106944 TGACTCGGACTGCAGTGTCA 61.107 55.000 27.27 26.22 39.29 3.58
300 303 0.244994 GACTCGGACTGCAGTGTCAT 59.755 55.000 27.27 5.43 38.61 3.06
301 304 0.681733 ACTCGGACTGCAGTGTCATT 59.318 50.000 27.27 2.18 38.61 2.57
320 323 6.203915 TGTCATTATTGATATGTTACGCCACC 59.796 38.462 0.00 0.00 33.56 4.61
331 334 2.935955 CGCCACCGTGACTTGAAC 59.064 61.111 0.00 0.00 0.00 3.18
334 337 1.068417 CCACCGTGACTTGAACCGA 59.932 57.895 0.00 0.00 0.00 4.69
350 353 3.239253 GATCCCCGGTGGCCGTAT 61.239 66.667 0.00 0.00 46.80 3.06
355 358 2.110352 CCCGGTGGCCGTATTTGTC 61.110 63.158 0.00 0.00 46.80 3.18
363 366 3.013921 TGGCCGTATTTGTCAAGGAATC 58.986 45.455 0.00 0.00 0.00 2.52
365 368 2.031683 GCCGTATTTGTCAAGGAATCGG 59.968 50.000 0.00 0.00 38.67 4.18
376 379 4.976116 GTCAAGGAATCGGAAAAACTGTTG 59.024 41.667 0.00 0.00 0.00 3.33
378 381 2.031157 AGGAATCGGAAAAACTGTTGCG 60.031 45.455 0.00 0.00 42.91 4.85
394 397 3.098636 GTTGCGTTCAAGTTGAGAACAC 58.901 45.455 5.56 0.57 44.22 3.32
406 409 4.335594 AGTTGAGAACACCTACTTTTGCAC 59.664 41.667 0.00 0.00 0.00 4.57
411 414 4.451096 AGAACACCTACTTTTGCACGTATG 59.549 41.667 0.00 0.00 0.00 2.39
414 417 5.484715 ACACCTACTTTTGCACGTATGTAT 58.515 37.500 0.00 0.00 0.00 2.29
448 451 1.885887 GTAGTTCATGCACTTGCCCAA 59.114 47.619 2.60 0.00 41.18 4.12
461 464 3.960102 ACTTGCCCAAATGAGAAAGACAA 59.040 39.130 0.00 0.00 0.00 3.18
467 470 4.083802 CCCAAATGAGAAAGACAACGTCTC 60.084 45.833 0.00 0.00 42.59 3.36
482 485 0.592754 GTCTCGCACGACCATCTAGC 60.593 60.000 0.00 0.00 0.00 3.42
484 487 0.593518 CTCGCACGACCATCTAGCTG 60.594 60.000 0.00 0.00 0.00 4.24
510 513 0.610687 GGCCCGGATGAGAGGAATAG 59.389 60.000 0.73 0.00 0.00 1.73
517 520 5.396884 CCCGGATGAGAGGAATAGAAAAACT 60.397 44.000 0.73 0.00 0.00 2.66
555 558 8.562892 GCTGAGAACATATACTTTTGCATGTAT 58.437 33.333 10.79 10.79 31.55 2.29
611 614 3.761897 TCCAAATGGGAAAGACATCGTT 58.238 40.909 0.00 0.00 44.80 3.85
656 659 0.671781 GGCCCGGATGAGATTGATCG 60.672 60.000 0.73 0.00 0.00 3.69
736 739 8.456904 AATGACAATTCTTGATGAATGAAACG 57.543 30.769 0.00 0.00 43.99 3.60
741 744 4.621068 TCTTGATGAATGAAACGCCATC 57.379 40.909 0.00 0.00 36.77 3.51
746 749 5.401550 TGATGAATGAAACGCCATCTTTTC 58.598 37.500 0.00 0.00 37.06 2.29
748 751 5.452078 TGAATGAAACGCCATCTTTTCTT 57.548 34.783 0.00 0.00 33.25 2.52
826 832 6.709018 TTTTTAGGGTAGCCATTAATCTGC 57.291 37.500 14.62 0.00 0.00 4.26
866 872 1.952296 GCCATTAATCTGCTGGGTGAG 59.048 52.381 0.27 0.00 0.00 3.51
919 925 3.007920 CCCAGCCACAGCCTCTCT 61.008 66.667 0.00 0.00 41.25 3.10
920 926 2.583520 CCAGCCACAGCCTCTCTC 59.416 66.667 0.00 0.00 41.25 3.20
966 972 3.827898 CTCCGTCTCACCTCGCCC 61.828 72.222 0.00 0.00 0.00 6.13
969 975 4.436998 CGTCTCACCTCGCCCCAC 62.437 72.222 0.00 0.00 0.00 4.61
970 976 4.083862 GTCTCACCTCGCCCCACC 62.084 72.222 0.00 0.00 0.00 4.61
1068 1074 0.326238 TCTACCCACACATCTCCCCC 60.326 60.000 0.00 0.00 0.00 5.40
1114 1120 4.778143 AACATGGTCGAGGGGCGC 62.778 66.667 0.00 0.00 40.61 6.53
1191 1197 0.460987 CCAGTCAGTCGAGCCAATCC 60.461 60.000 0.00 0.00 0.00 3.01
1237 1243 2.685017 TGGCGGGCACAGAGAGAT 60.685 61.111 0.00 0.00 0.00 2.75
1239 1245 2.279120 GCGGGCACAGAGAGATCG 60.279 66.667 0.00 0.00 0.00 3.69
1308 1314 2.676471 GCCCGTGGCCACAAGATT 60.676 61.111 34.16 0.00 44.06 2.40
1423 1429 3.421826 GCGTCCGCATTATTAGAACATCG 60.422 47.826 6.82 0.00 41.49 3.84
1486 1492 4.156008 GTGGCGAACAAGGATAGTTTTCAT 59.844 41.667 0.00 0.00 0.00 2.57
1560 1567 4.816786 TCATGTCATGGCATATTGAACG 57.183 40.909 13.48 0.00 0.00 3.95
1657 1664 2.334977 TGGAGTATTGGGTGTGTGACT 58.665 47.619 0.00 0.00 0.00 3.41
1658 1665 3.512496 TGGAGTATTGGGTGTGTGACTA 58.488 45.455 0.00 0.00 0.00 2.59
1659 1666 3.513912 TGGAGTATTGGGTGTGTGACTAG 59.486 47.826 0.00 0.00 0.00 2.57
1690 1697 5.111293 AGACACAAAGCAAAATTTCAGTGG 58.889 37.500 0.00 0.00 0.00 4.00
1710 1717 8.081633 TCAGTGGAAATTTATGCTTTGTACTTG 58.918 33.333 0.00 0.00 0.00 3.16
1711 1718 6.868339 AGTGGAAATTTATGCTTTGTACTTGC 59.132 34.615 0.00 0.00 0.00 4.01
1712 1719 6.090763 GTGGAAATTTATGCTTTGTACTTGCC 59.909 38.462 0.00 0.00 0.00 4.52
1793 1829 8.650143 AGCTTTACATGAAAAATTCCTAAGGA 57.350 30.769 0.00 0.00 0.00 3.36
1794 1830 8.743714 AGCTTTACATGAAAAATTCCTAAGGAG 58.256 33.333 0.00 0.00 31.21 3.69
1821 1857 9.634021 AATAGAATTCTCCAAAATTCCTACTCC 57.366 33.333 12.24 0.00 43.59 3.85
1822 1858 6.427441 AGAATTCTCCAAAATTCCTACTCCC 58.573 40.000 0.88 0.00 43.59 4.30
1823 1859 6.218522 AGAATTCTCCAAAATTCCTACTCCCT 59.781 38.462 0.88 0.00 43.59 4.20
1824 1860 5.437191 TTCTCCAAAATTCCTACTCCCTC 57.563 43.478 0.00 0.00 0.00 4.30
1825 1861 4.699994 TCTCCAAAATTCCTACTCCCTCT 58.300 43.478 0.00 0.00 0.00 3.69
1826 1862 5.101529 TCTCCAAAATTCCTACTCCCTCTT 58.898 41.667 0.00 0.00 0.00 2.85
1827 1863 5.551977 TCTCCAAAATTCCTACTCCCTCTTT 59.448 40.000 0.00 0.00 0.00 2.52
1828 1864 5.816682 TCCAAAATTCCTACTCCCTCTTTC 58.183 41.667 0.00 0.00 0.00 2.62
1829 1865 4.950475 CCAAAATTCCTACTCCCTCTTTCC 59.050 45.833 0.00 0.00 0.00 3.13
1830 1866 5.516591 CCAAAATTCCTACTCCCTCTTTCCA 60.517 44.000 0.00 0.00 0.00 3.53
1831 1867 6.190587 CAAAATTCCTACTCCCTCTTTCCAT 58.809 40.000 0.00 0.00 0.00 3.41
1832 1868 5.638530 AATTCCTACTCCCTCTTTCCATC 57.361 43.478 0.00 0.00 0.00 3.51
1833 1869 4.354208 TTCCTACTCCCTCTTTCCATCT 57.646 45.455 0.00 0.00 0.00 2.90
1834 1870 5.483174 TTCCTACTCCCTCTTTCCATCTA 57.517 43.478 0.00 0.00 0.00 1.98
1835 1871 5.688220 TCCTACTCCCTCTTTCCATCTAT 57.312 43.478 0.00 0.00 0.00 1.98
1836 1872 6.798544 TCCTACTCCCTCTTTCCATCTATA 57.201 41.667 0.00 0.00 0.00 1.31
1837 1873 7.363759 TCCTACTCCCTCTTTCCATCTATAT 57.636 40.000 0.00 0.00 0.00 0.86
1838 1874 8.478214 TCCTACTCCCTCTTTCCATCTATATA 57.522 38.462 0.00 0.00 0.00 0.86
1839 1875 8.561769 TCCTACTCCCTCTTTCCATCTATATAG 58.438 40.741 3.10 3.10 0.00 1.31
1840 1876 7.782644 CCTACTCCCTCTTTCCATCTATATAGG 59.217 44.444 9.89 0.00 0.00 2.57
1841 1877 6.507568 ACTCCCTCTTTCCATCTATATAGGG 58.492 44.000 9.89 4.49 43.23 3.53
1842 1878 5.281314 TCCCTCTTTCCATCTATATAGGGC 58.719 45.833 9.89 0.00 41.88 5.19
1843 1879 4.410555 CCCTCTTTCCATCTATATAGGGCC 59.589 50.000 9.89 0.00 36.30 5.80
1844 1880 5.284582 CCTCTTTCCATCTATATAGGGCCT 58.715 45.833 12.58 12.58 0.00 5.19
1845 1881 6.444704 CCTCTTTCCATCTATATAGGGCCTA 58.555 44.000 17.16 17.16 0.00 3.93
1846 1882 6.903534 CCTCTTTCCATCTATATAGGGCCTAA 59.096 42.308 18.91 7.61 0.00 2.69
1847 1883 7.570607 CCTCTTTCCATCTATATAGGGCCTAAT 59.429 40.741 18.91 14.19 0.00 1.73
1848 1884 8.324191 TCTTTCCATCTATATAGGGCCTAATG 57.676 38.462 18.91 15.42 0.00 1.90
1849 1885 6.500589 TTCCATCTATATAGGGCCTAATGC 57.499 41.667 18.91 0.00 40.16 3.56
1850 1886 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
1851 1887 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
1852 1888 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
1853 1889 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
1854 1890 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
1855 1891 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
1856 1892 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
1857 1893 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
1858 1894 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
1859 1895 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
1860 1896 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
1861 1897 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
1862 1898 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
1863 1899 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
1864 1900 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
1865 1901 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
1866 1902 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
1867 1903 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
1868 1904 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
1869 1905 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
1870 1906 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
1871 1907 4.209112 CGTTTTTCGAGGCTAACTTTGAC 58.791 43.478 0.00 0.00 42.86 3.18
1872 1908 4.534168 GTTTTTCGAGGCTAACTTTGACC 58.466 43.478 0.00 0.00 0.00 4.02
1873 1909 3.478857 TTTCGAGGCTAACTTTGACCA 57.521 42.857 0.00 0.00 0.00 4.02
1874 1910 3.478857 TTCGAGGCTAACTTTGACCAA 57.521 42.857 0.00 0.00 0.00 3.67
1875 1911 3.478857 TCGAGGCTAACTTTGACCAAA 57.521 42.857 0.00 0.00 0.00 3.28
1876 1912 4.015872 TCGAGGCTAACTTTGACCAAAT 57.984 40.909 0.00 0.00 0.00 2.32
1877 1913 5.155278 TCGAGGCTAACTTTGACCAAATA 57.845 39.130 0.00 0.00 0.00 1.40
1878 1914 5.741011 TCGAGGCTAACTTTGACCAAATAT 58.259 37.500 0.00 0.00 0.00 1.28
1879 1915 6.177610 TCGAGGCTAACTTTGACCAAATATT 58.822 36.000 0.00 0.00 0.00 1.28
1880 1916 7.332557 TCGAGGCTAACTTTGACCAAATATTA 58.667 34.615 0.00 0.00 0.00 0.98
1881 1917 7.494625 TCGAGGCTAACTTTGACCAAATATTAG 59.505 37.037 15.32 15.32 34.88 1.73
1882 1918 7.494625 CGAGGCTAACTTTGACCAAATATTAGA 59.505 37.037 19.82 0.15 34.31 2.10
1883 1919 8.738645 AGGCTAACTTTGACCAAATATTAGAG 57.261 34.615 19.82 7.39 34.31 2.43
1884 1920 7.283354 AGGCTAACTTTGACCAAATATTAGAGC 59.717 37.037 19.82 13.12 34.31 4.09
1885 1921 7.067008 GGCTAACTTTGACCAAATATTAGAGCA 59.933 37.037 19.82 0.00 34.31 4.26
1886 1922 8.458843 GCTAACTTTGACCAAATATTAGAGCAA 58.541 33.333 19.82 0.00 34.31 3.91
1905 1941 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
1906 1942 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
1915 1951 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
1916 1952 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
1917 1953 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
1918 1954 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
1919 1955 3.143807 TGCAACTTACACAAAGCACAC 57.856 42.857 0.00 0.00 38.93 3.82
1920 1956 2.159310 TGCAACTTACACAAAGCACACC 60.159 45.455 0.00 0.00 38.93 4.16
1921 1957 2.715268 CAACTTACACAAAGCACACCG 58.285 47.619 0.00 0.00 38.93 4.94
1922 1958 2.032680 ACTTACACAAAGCACACCGT 57.967 45.000 0.00 0.00 38.93 4.83
1923 1959 2.361789 ACTTACACAAAGCACACCGTT 58.638 42.857 0.00 0.00 38.93 4.44
1924 1960 3.533547 ACTTACACAAAGCACACCGTTA 58.466 40.909 0.00 0.00 38.93 3.18
1925 1961 3.940221 ACTTACACAAAGCACACCGTTAA 59.060 39.130 0.00 0.00 38.93 2.01
1926 1962 4.395542 ACTTACACAAAGCACACCGTTAAA 59.604 37.500 0.00 0.00 38.93 1.52
1927 1963 5.066764 ACTTACACAAAGCACACCGTTAAAT 59.933 36.000 0.00 0.00 38.93 1.40
1928 1964 4.379339 ACACAAAGCACACCGTTAAATT 57.621 36.364 0.00 0.00 0.00 1.82
1929 1965 4.356289 ACACAAAGCACACCGTTAAATTC 58.644 39.130 0.00 0.00 0.00 2.17
1930 1966 3.420576 CACAAAGCACACCGTTAAATTCG 59.579 43.478 0.00 0.00 0.00 3.34
1931 1967 3.065648 ACAAAGCACACCGTTAAATTCGT 59.934 39.130 0.00 0.00 0.00 3.85
1932 1968 2.961522 AGCACACCGTTAAATTCGTG 57.038 45.000 0.00 0.00 0.00 4.35
1933 1969 2.215196 AGCACACCGTTAAATTCGTGT 58.785 42.857 0.00 0.00 0.00 4.49
1934 1970 2.032377 AGCACACCGTTAAATTCGTGTG 60.032 45.455 13.39 13.39 40.02 3.82
1935 1971 2.286536 GCACACCGTTAAATTCGTGTGT 60.287 45.455 17.54 12.66 40.37 3.72
1936 1972 3.284914 CACACCGTTAAATTCGTGTGTG 58.715 45.455 17.05 17.05 44.50 3.82
1937 1973 3.196463 ACACCGTTAAATTCGTGTGTGA 58.804 40.909 9.71 0.00 39.31 3.58
1938 1974 3.622163 ACACCGTTAAATTCGTGTGTGAA 59.378 39.130 9.71 0.00 39.31 3.18
1939 1975 4.094590 ACACCGTTAAATTCGTGTGTGAAA 59.905 37.500 9.71 0.00 39.31 2.69
1940 1976 4.668837 CACCGTTAAATTCGTGTGTGAAAG 59.331 41.667 0.00 0.00 0.00 2.62
1941 1977 4.215965 CCGTTAAATTCGTGTGTGAAAGG 58.784 43.478 0.00 0.00 0.00 3.11
1942 1978 4.024725 CCGTTAAATTCGTGTGTGAAAGGA 60.025 41.667 0.00 0.00 0.00 3.36
1943 1979 5.137403 CGTTAAATTCGTGTGTGAAAGGAG 58.863 41.667 0.00 0.00 0.00 3.69
1944 1980 3.626028 AAATTCGTGTGTGAAAGGAGC 57.374 42.857 0.00 0.00 0.00 4.70
1945 1981 2.550830 ATTCGTGTGTGAAAGGAGCT 57.449 45.000 0.00 0.00 0.00 4.09
1946 1982 2.325583 TTCGTGTGTGAAAGGAGCTT 57.674 45.000 0.00 0.00 0.00 3.74
1947 1983 2.325583 TCGTGTGTGAAAGGAGCTTT 57.674 45.000 0.00 0.00 36.29 3.51
1948 1984 2.210116 TCGTGTGTGAAAGGAGCTTTC 58.790 47.619 0.00 0.00 46.88 2.62
1977 2013 9.518906 TGATATAATTTTCACATTGTGCATGTC 57.481 29.630 12.04 6.55 43.17 3.06
1978 2014 9.518906 GATATAATTTTCACATTGTGCATGTCA 57.481 29.630 12.04 0.00 43.17 3.58
1980 2016 6.474819 AATTTTCACATTGTGCATGTCATG 57.525 33.333 12.04 8.56 43.17 3.07
1981 2017 4.587584 TTTCACATTGTGCATGTCATGT 57.412 36.364 14.26 0.00 43.17 3.21
1982 2018 5.702349 TTTCACATTGTGCATGTCATGTA 57.298 34.783 14.26 7.11 43.17 2.29
1983 2019 4.683501 TCACATTGTGCATGTCATGTAC 57.316 40.909 22.84 22.84 43.17 2.90
1984 2020 4.325972 TCACATTGTGCATGTCATGTACT 58.674 39.130 27.47 11.55 43.17 2.73
1985 2021 5.486526 TCACATTGTGCATGTCATGTACTA 58.513 37.500 27.47 22.59 43.17 1.82
1986 2022 6.114767 TCACATTGTGCATGTCATGTACTAT 58.885 36.000 27.47 23.55 43.17 2.12
1987 2023 6.598850 TCACATTGTGCATGTCATGTACTATT 59.401 34.615 27.47 16.17 43.17 1.73
1988 2024 7.768120 TCACATTGTGCATGTCATGTACTATTA 59.232 33.333 27.47 14.37 43.17 0.98
1989 2025 8.397148 CACATTGTGCATGTCATGTACTATTAA 58.603 33.333 27.47 17.22 43.17 1.40
1990 2026 9.123902 ACATTGTGCATGTCATGTACTATTAAT 57.876 29.630 27.47 18.36 43.17 1.40
1991 2027 9.603298 CATTGTGCATGTCATGTACTATTAATC 57.397 33.333 27.47 6.34 44.74 1.75
1992 2028 8.962884 TTGTGCATGTCATGTACTATTAATCT 57.037 30.769 27.47 0.00 44.74 2.40
1993 2029 8.962884 TGTGCATGTCATGTACTATTAATCTT 57.037 30.769 27.47 0.00 44.74 2.40
1994 2030 8.829612 TGTGCATGTCATGTACTATTAATCTTG 58.170 33.333 27.47 0.00 44.74 3.02
1995 2031 8.830580 GTGCATGTCATGTACTATTAATCTTGT 58.169 33.333 22.47 0.00 41.79 3.16
1996 2032 9.045223 TGCATGTCATGTACTATTAATCTTGTC 57.955 33.333 14.26 0.00 0.00 3.18
1997 2033 9.045223 GCATGTCATGTACTATTAATCTTGTCA 57.955 33.333 14.26 0.00 0.00 3.58
2011 2047 6.824305 AATCTTGTCAATAGTCAAAGGTGG 57.176 37.500 0.00 0.00 0.00 4.61
2012 2048 5.304686 TCTTGTCAATAGTCAAAGGTGGT 57.695 39.130 0.00 0.00 0.00 4.16
2013 2049 5.305585 TCTTGTCAATAGTCAAAGGTGGTC 58.694 41.667 0.00 0.00 0.00 4.02
2014 2050 4.974645 TGTCAATAGTCAAAGGTGGTCT 57.025 40.909 0.00 0.00 0.00 3.85
2015 2051 5.304686 TGTCAATAGTCAAAGGTGGTCTT 57.695 39.130 0.00 0.00 37.28 3.01
2016 2052 6.428083 TGTCAATAGTCAAAGGTGGTCTTA 57.572 37.500 0.00 0.00 34.78 2.10
2017 2053 6.833041 TGTCAATAGTCAAAGGTGGTCTTAA 58.167 36.000 0.00 0.00 34.78 1.85
2018 2054 7.284074 TGTCAATAGTCAAAGGTGGTCTTAAA 58.716 34.615 0.00 0.00 34.78 1.52
2019 2055 7.776030 TGTCAATAGTCAAAGGTGGTCTTAAAA 59.224 33.333 0.00 0.00 34.78 1.52
2020 2056 8.626526 GTCAATAGTCAAAGGTGGTCTTAAAAA 58.373 33.333 0.00 0.00 34.78 1.94
2043 2079 9.520515 AAAAACACATTAGGCCCTATATAGATG 57.479 33.333 11.53 8.07 0.00 2.90
2044 2080 6.814954 ACACATTAGGCCCTATATAGATGG 57.185 41.667 11.53 6.04 0.00 3.51
2045 2081 6.512120 ACACATTAGGCCCTATATAGATGGA 58.488 40.000 11.53 0.00 0.00 3.41
2046 2082 6.965866 ACACATTAGGCCCTATATAGATGGAA 59.034 38.462 11.53 0.00 0.00 3.53
2047 2083 7.126421 ACACATTAGGCCCTATATAGATGGAAG 59.874 40.741 11.53 3.88 0.00 3.46
2048 2084 6.617371 ACATTAGGCCCTATATAGATGGAAGG 59.383 42.308 11.53 3.94 0.00 3.46
2049 2085 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
2050 2086 5.511546 AGGCCCTATATAGATGGAAGGAT 57.488 43.478 11.53 0.00 0.00 3.24
2051 2087 5.222870 AGGCCCTATATAGATGGAAGGATG 58.777 45.833 11.53 0.00 0.00 3.51
2052 2088 4.349342 GGCCCTATATAGATGGAAGGATGG 59.651 50.000 11.53 1.18 0.00 3.51
2053 2089 5.219739 GCCCTATATAGATGGAAGGATGGA 58.780 45.833 11.53 0.00 0.00 3.41
2054 2090 5.306678 GCCCTATATAGATGGAAGGATGGAG 59.693 48.000 11.53 0.00 0.00 3.86
2055 2091 6.448202 CCCTATATAGATGGAAGGATGGAGT 58.552 44.000 11.53 0.00 0.00 3.85
2056 2092 7.596407 CCCTATATAGATGGAAGGATGGAGTA 58.404 42.308 11.53 0.00 0.00 2.59
2057 2093 7.507616 CCCTATATAGATGGAAGGATGGAGTAC 59.492 44.444 11.53 0.00 0.00 2.73
2058 2094 8.285891 CCTATATAGATGGAAGGATGGAGTACT 58.714 40.741 11.53 0.00 0.00 2.73
2137 2176 7.848223 TTGTCCATAACAATAGTGATGTCTG 57.152 36.000 0.00 0.00 42.95 3.51
2170 2209 4.335315 TCAATTTCTGAGTCGTTGCACTTT 59.665 37.500 0.00 0.00 0.00 2.66
2176 2215 5.220381 TCTGAGTCGTTGCACTTTTAGTAG 58.780 41.667 0.00 0.00 0.00 2.57
2222 2261 7.886338 TGCTCCTAGATACACACACTATATTG 58.114 38.462 0.00 0.00 0.00 1.90
2225 2264 8.422577 TCCTAGATACACACACTATATTGCAT 57.577 34.615 0.00 0.00 0.00 3.96
2229 2268 8.824159 AGATACACACACTATATTGCATTCTC 57.176 34.615 0.00 0.00 0.00 2.87
2247 2286 5.705609 TTCTCTGCCTGTTTGATTTTACC 57.294 39.130 0.00 0.00 0.00 2.85
2422 2464 4.487714 TGGCGATTACTTCAAGAAGGAT 57.512 40.909 13.83 7.52 42.53 3.24
2517 2559 5.811399 TCCATGATGGTAAACTTTAAGCG 57.189 39.130 11.87 0.00 39.03 4.68
2532 2574 7.462571 ACTTTAAGCGGTTTATCTGGAAAAT 57.537 32.000 4.64 0.00 0.00 1.82
2546 2588 5.759059 TCTGGAAAATATTGCCATGTCTCT 58.241 37.500 9.92 0.00 0.00 3.10
2629 2671 4.520111 TCTTTGTCACTTTGTGCTATGCAT 59.480 37.500 3.79 3.79 41.91 3.96
2637 2679 7.588854 GTCACTTTGTGCTATGCATATACATTG 59.411 37.037 18.89 16.59 41.91 2.82
2757 2799 4.106663 ACTCCACTGGGTTTTTATGGGTAA 59.893 41.667 0.00 0.00 34.93 2.85
2861 2903 2.158957 GGGTCACTTCACTGTTCACTCA 60.159 50.000 0.00 0.00 0.00 3.41
2905 2947 1.908619 TGCCATCTTCTACCTGCTTCA 59.091 47.619 0.00 0.00 0.00 3.02
2916 2958 2.555199 ACCTGCTTCACGCTCAATATC 58.445 47.619 0.00 0.00 40.11 1.63
2986 3028 4.393680 GCATGCATGTGTTGGAAAAATCAT 59.606 37.500 26.79 0.00 0.00 2.45
3393 3435 0.940126 GAACATGCTATGAGGTGCCG 59.060 55.000 0.00 0.00 0.00 5.69
3439 3481 5.064452 CCTTTTCATGTTCTGCTAGTGCTAG 59.936 44.000 2.04 2.04 40.48 3.42
3459 3501 6.760298 TGCTAGCATTCATTTTGTTTGTGAAA 59.240 30.769 14.93 0.00 35.70 2.69
3631 3673 6.724263 TGTTTGTTTGTTACTGCAGTGATAG 58.276 36.000 29.57 0.00 0.00 2.08
3672 3714 6.835174 ACCACATATCACTGCTAATTCTCAT 58.165 36.000 0.00 0.00 0.00 2.90
3872 3914 2.612212 TGCACGTTTCTTTTGAGAGGTC 59.388 45.455 0.00 0.00 30.74 3.85
3967 4009 7.617041 AAGCTTATAGCAACGAATTTCTTCT 57.383 32.000 0.00 0.00 45.56 2.85
3969 4011 8.045176 AGCTTATAGCAACGAATTTCTTCTTT 57.955 30.769 1.09 0.00 45.56 2.52
4125 4167 2.549754 GGATCCTTGAATGCGGTATGTG 59.450 50.000 3.84 0.00 0.00 3.21
4148 4190 5.245977 TGAAGATTCTATGGCATCGATGGTA 59.754 40.000 26.00 4.13 0.00 3.25
4907 4952 5.643777 GGAAATCGATTCTTGGAGAACTTCA 59.356 40.000 11.83 0.00 37.00 3.02
4995 5040 1.486726 GAGGCATTAGGTAGTGCTGGT 59.513 52.381 4.70 0.00 38.74 4.00
4997 5042 1.209504 GGCATTAGGTAGTGCTGGTGA 59.790 52.381 4.70 0.00 38.74 4.02
4998 5043 2.158755 GGCATTAGGTAGTGCTGGTGAT 60.159 50.000 4.70 0.00 38.74 3.06
4999 5044 3.071023 GGCATTAGGTAGTGCTGGTGATA 59.929 47.826 4.70 0.00 38.74 2.15
5000 5045 4.263068 GGCATTAGGTAGTGCTGGTGATAT 60.263 45.833 4.70 0.00 38.74 1.63
5001 5046 5.308825 GCATTAGGTAGTGCTGGTGATATT 58.691 41.667 0.00 0.00 36.20 1.28
5002 5047 5.180117 GCATTAGGTAGTGCTGGTGATATTG 59.820 44.000 0.00 0.00 36.20 1.90
5003 5048 3.845781 AGGTAGTGCTGGTGATATTGG 57.154 47.619 0.00 0.00 0.00 3.16
5004 5049 3.384168 AGGTAGTGCTGGTGATATTGGA 58.616 45.455 0.00 0.00 0.00 3.53
5121 5166 6.043938 GGGGTGTTACTATTGATATGAAGGGA 59.956 42.308 0.00 0.00 0.00 4.20
5209 5254 6.127101 TCTGTAGGAAATGAGACCGAGATTA 58.873 40.000 0.00 0.00 0.00 1.75
5256 5301 3.732048 TTGGGGTATGAGTCCCTTTTC 57.268 47.619 0.00 0.00 44.07 2.29
5286 5331 9.908152 ACAGCTGTTGTTAAAGGTATTTTAATC 57.092 29.630 15.25 0.00 41.79 1.75
5385 5430 0.324943 CGGGTGGTCAAGTTGGAGAT 59.675 55.000 2.34 0.00 0.00 2.75
5395 5440 5.125578 GGTCAAGTTGGAGATAATGGTTTCC 59.874 44.000 2.34 0.00 0.00 3.13
5586 5631 7.255277 GGAGCCAAGGTATGAAAACTATGAATC 60.255 40.741 0.00 0.00 0.00 2.52
5840 5885 7.451566 TGTCCTCTGATAGCTTAGCATACATTA 59.548 37.037 7.07 0.00 0.00 1.90
5861 5926 9.507329 ACATTAACATAAAATGTCTGACTGTCT 57.493 29.630 9.51 0.00 42.45 3.41
5862 5927 9.764870 CATTAACATAAAATGTCTGACTGTCTG 57.235 33.333 9.51 8.83 44.07 3.51
5863 5928 5.869753 ACATAAAATGTCTGACTGTCTGC 57.130 39.130 9.51 5.89 39.92 4.26
5864 5929 5.308014 ACATAAAATGTCTGACTGTCTGCA 58.692 37.500 9.51 10.86 39.92 4.41
5865 5930 5.764686 ACATAAAATGTCTGACTGTCTGCAA 59.235 36.000 9.51 1.03 39.92 4.08
5866 5931 6.262944 ACATAAAATGTCTGACTGTCTGCAAA 59.737 34.615 9.51 0.00 39.92 3.68
5867 5932 4.825546 AAATGTCTGACTGTCTGCAAAG 57.174 40.909 9.51 0.00 0.00 2.77
5868 5933 3.758755 ATGTCTGACTGTCTGCAAAGA 57.241 42.857 9.51 0.04 0.00 2.52
5869 5934 3.758755 TGTCTGACTGTCTGCAAAGAT 57.241 42.857 9.51 0.00 0.00 2.40
5870 5935 3.396560 TGTCTGACTGTCTGCAAAGATG 58.603 45.455 9.51 0.00 0.00 2.90
5871 5936 3.181462 TGTCTGACTGTCTGCAAAGATGT 60.181 43.478 9.51 0.00 0.00 3.06
5872 5937 3.812053 GTCTGACTGTCTGCAAAGATGTT 59.188 43.478 9.51 0.00 0.00 2.71
5873 5938 4.991056 GTCTGACTGTCTGCAAAGATGTTA 59.009 41.667 9.51 0.00 0.00 2.41
5876 5941 4.991056 TGACTGTCTGCAAAGATGTTACTC 59.009 41.667 9.51 0.00 0.00 2.59
5898 5963 5.049828 TCGTAACTGGCATGAATATCAGTG 58.950 41.667 0.00 0.00 39.97 3.66
6014 6079 5.010922 TGTTTGCCTCTAACAAATGCTCATT 59.989 36.000 0.00 0.00 39.09 2.57
6034 6099 2.695359 TCAGGAAGTTACCGATTGCAC 58.305 47.619 0.00 0.00 34.73 4.57
6169 6234 1.677217 GGTTCAGAGACATCACAGGCC 60.677 57.143 0.00 0.00 0.00 5.19
6196 6261 1.676006 CTTGTGGCTTTTGACCGTCTT 59.324 47.619 0.00 0.00 0.00 3.01
6235 6300 2.442413 CATCGGCCCCTTACAGAAAAA 58.558 47.619 0.00 0.00 0.00 1.94
6238 6303 2.106857 TCGGCCCCTTACAGAAAAAGAA 59.893 45.455 0.00 0.00 0.00 2.52
6386 6451 7.612633 ACGGTGAACAGGTTGGTATTTATAAAT 59.387 33.333 14.86 14.86 0.00 1.40
6444 6509 7.919091 ACAGCAATATTTCTGCAAAGTCATATG 59.081 33.333 14.09 0.00 42.48 1.78
6686 6752 2.741759 TGCGACACTTATGCTCTTCA 57.258 45.000 0.00 0.00 0.00 3.02
6786 6852 3.271729 AGCTGAAATCTGTGCATCTGAG 58.728 45.455 0.00 0.00 0.00 3.35
6787 6853 3.055312 AGCTGAAATCTGTGCATCTGAGA 60.055 43.478 0.00 0.00 0.00 3.27
6788 6854 3.878103 GCTGAAATCTGTGCATCTGAGAT 59.122 43.478 0.00 0.00 0.00 2.75
6789 6855 4.024725 GCTGAAATCTGTGCATCTGAGATC 60.025 45.833 0.00 0.00 0.00 2.75
6790 6856 5.354842 TGAAATCTGTGCATCTGAGATCT 57.645 39.130 0.00 0.00 0.00 2.75
6792 6858 5.816258 TGAAATCTGTGCATCTGAGATCTTC 59.184 40.000 0.00 3.68 0.00 2.87
6793 6859 5.354842 AATCTGTGCATCTGAGATCTTCA 57.645 39.130 0.00 0.00 0.00 3.02
6794 6860 5.554437 ATCTGTGCATCTGAGATCTTCAT 57.446 39.130 0.00 0.00 34.68 2.57
6795 6861 4.946445 TCTGTGCATCTGAGATCTTCATC 58.054 43.478 0.00 0.00 34.68 2.92
6796 6862 4.650131 TCTGTGCATCTGAGATCTTCATCT 59.350 41.667 0.00 0.00 42.59 2.90
6960 7033 4.893795 GCACAAGCCTACTTAATTGTACG 58.106 43.478 0.00 0.00 34.26 3.67
6965 7038 2.925563 GCCTACTTAATTGTACGCACGT 59.074 45.455 0.00 0.00 0.00 4.49
7102 7177 2.124122 GTTGACCGTGCCATTCAAAAC 58.876 47.619 0.00 0.00 31.21 2.43
7219 7294 6.138761 GTCAACAGCAGAGTAGAAACAATTG 58.861 40.000 3.24 3.24 0.00 2.32
7394 7469 4.335874 ACTTACTGTACTGTCTATCTGGCG 59.664 45.833 8.85 0.00 0.00 5.69
7460 7536 3.953612 TCACTTCACATTTGCAACCTCTT 59.046 39.130 0.00 0.00 0.00 2.85
7677 7753 1.457455 AGGCAAGTTTGTGGGTGGG 60.457 57.895 0.00 0.00 0.00 4.61
7695 7771 0.248094 GGATAGCGAAACTTTGCGGC 60.248 55.000 0.00 0.00 42.47 6.53
7734 7810 2.519302 AACTTTGCGCAGGCTGGT 60.519 55.556 17.64 0.87 40.82 4.00
7755 7831 1.433534 GTCGGAAGCCAGAGAACTTG 58.566 55.000 0.00 0.00 0.00 3.16
7798 7874 1.777199 GCTGAAATTGTTGCAGCGC 59.223 52.632 6.89 0.00 44.52 5.92
8045 8123 2.793831 GTGGGACAACAGTTGCACT 58.206 52.632 13.56 0.00 44.16 4.40
8046 8124 1.102978 GTGGGACAACAGTTGCACTT 58.897 50.000 13.56 0.00 44.16 3.16
8047 8125 1.102154 TGGGACAACAGTTGCACTTG 58.898 50.000 13.56 0.00 31.92 3.16
8048 8126 0.249031 GGGACAACAGTTGCACTTGC 60.249 55.000 13.56 0.00 42.50 4.01
8071 8149 6.045318 GCACATATATGCTGGAGTACATAGG 58.955 44.000 12.79 0.00 42.62 2.57
8196 8362 8.103924 GCTTCGCAACTAAAATACATGAATTTG 58.896 33.333 0.00 0.00 0.00 2.32
8226 8392 7.436376 GGATTTGATTTGCCATCTTTAGCTAAC 59.564 37.037 5.45 0.00 0.00 2.34
8244 8410 0.942252 ACGAACGAAAGGGACAAAGC 59.058 50.000 0.14 0.00 0.00 3.51
8308 8475 4.261197 GGTTGTGTCTGCCTAAAAGAACAG 60.261 45.833 0.00 0.00 0.00 3.16
8366 8533 6.601613 CCATTTGGCTACTTGTTTATCAGGTA 59.398 38.462 0.00 0.00 37.53 3.08
8370 8537 8.466617 TTGGCTACTTGTTTATCAGGTAAAAA 57.533 30.769 0.00 0.00 37.97 1.94
8428 8595 5.489792 TGATAGGGATATCCAAAGAGTGC 57.510 43.478 23.27 3.28 38.24 4.40
8445 8612 4.948621 AGAGTGCGTGGTAGTAGTATTTCT 59.051 41.667 0.00 0.00 0.00 2.52
8451 8618 6.588756 TGCGTGGTAGTAGTATTTCTCTTTTG 59.411 38.462 0.00 0.00 0.00 2.44
8603 10908 8.641498 ACTATTTTCATGAGAAGTTTCCATGT 57.359 30.769 4.85 6.44 37.26 3.21
8657 10962 2.698274 ACAAATGTTCAAGGTCAACCCC 59.302 45.455 0.00 0.00 36.42 4.95
8666 10971 2.082140 AGGTCAACCCCCACTTTTTC 57.918 50.000 0.00 0.00 36.42 2.29
8673 10978 2.337849 ACCCCCACTTTTTCAATGCAT 58.662 42.857 0.00 0.00 0.00 3.96
8713 11018 4.408596 TCCAGACCATGCACATAACATCTA 59.591 41.667 0.00 0.00 0.00 1.98
8766 11071 4.344104 CATGACACCCTTTTCTTACCCAT 58.656 43.478 0.00 0.00 0.00 4.00
8810 11116 7.119262 CACTTCGGATCAGGTTAACATAGTTTT 59.881 37.037 8.10 0.00 0.00 2.43
8812 11118 8.712285 TTCGGATCAGGTTAACATAGTTTTAG 57.288 34.615 8.10 0.00 0.00 1.85
8813 11119 7.844009 TCGGATCAGGTTAACATAGTTTTAGT 58.156 34.615 8.10 0.00 0.00 2.24
8814 11120 7.977853 TCGGATCAGGTTAACATAGTTTTAGTC 59.022 37.037 8.10 0.00 0.00 2.59
8815 11121 7.762615 CGGATCAGGTTAACATAGTTTTAGTCA 59.237 37.037 8.10 0.00 0.00 3.41
8816 11122 8.880750 GGATCAGGTTAACATAGTTTTAGTCAC 58.119 37.037 8.10 0.00 0.00 3.67
8818 11124 9.787435 ATCAGGTTAACATAGTTTTAGTCACAA 57.213 29.630 8.10 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.404098 ATGTCGTTCCCGGGGCAC 62.404 66.667 23.50 17.07 33.95 5.01
11 12 4.402528 CATGTCGTTCCCGGGGCA 62.403 66.667 23.50 12.54 33.95 5.36
12 13 3.400599 ATCATGTCGTTCCCGGGGC 62.401 63.158 23.50 13.45 33.95 5.80
13 14 1.227556 GATCATGTCGTTCCCGGGG 60.228 63.158 23.50 6.77 33.95 5.73
14 15 1.591594 CGATCATGTCGTTCCCGGG 60.592 63.158 16.85 16.85 45.19 5.73
15 16 4.012554 CGATCATGTCGTTCCCGG 57.987 61.111 0.00 0.00 45.19 5.73
23 24 0.390860 AGTAGCTGGGCGATCATGTC 59.609 55.000 0.00 0.00 0.00 3.06
24 25 0.833287 AAGTAGCTGGGCGATCATGT 59.167 50.000 0.00 0.00 0.00 3.21
25 26 1.506493 GAAGTAGCTGGGCGATCATG 58.494 55.000 0.00 0.00 0.00 3.07
26 27 0.394565 GGAAGTAGCTGGGCGATCAT 59.605 55.000 0.00 0.00 0.00 2.45
27 28 1.686325 GGGAAGTAGCTGGGCGATCA 61.686 60.000 0.00 0.00 0.00 2.92
28 29 1.069935 GGGAAGTAGCTGGGCGATC 59.930 63.158 0.00 0.00 0.00 3.69
29 30 2.444256 GGGGAAGTAGCTGGGCGAT 61.444 63.158 0.00 0.00 0.00 4.58
30 31 2.232892 TAGGGGAAGTAGCTGGGCGA 62.233 60.000 0.00 0.00 0.00 5.54
31 32 1.760875 TAGGGGAAGTAGCTGGGCG 60.761 63.158 0.00 0.00 0.00 6.13
32 33 0.691413 AGTAGGGGAAGTAGCTGGGC 60.691 60.000 0.00 0.00 0.00 5.36
33 34 1.343075 TGAGTAGGGGAAGTAGCTGGG 60.343 57.143 0.00 0.00 0.00 4.45
34 35 1.757699 GTGAGTAGGGGAAGTAGCTGG 59.242 57.143 0.00 0.00 0.00 4.85
35 36 2.428890 CAGTGAGTAGGGGAAGTAGCTG 59.571 54.545 0.00 0.00 0.00 4.24
36 37 2.624557 CCAGTGAGTAGGGGAAGTAGCT 60.625 54.545 0.00 0.00 0.00 3.32
37 38 1.757699 CCAGTGAGTAGGGGAAGTAGC 59.242 57.143 0.00 0.00 0.00 3.58
38 39 3.292460 CTCCAGTGAGTAGGGGAAGTAG 58.708 54.545 0.00 0.00 33.70 2.57
39 40 2.623502 GCTCCAGTGAGTAGGGGAAGTA 60.624 54.545 0.00 0.00 40.95 2.24
72 73 6.156519 GTCAATGTTTAGTTTGTTCCATCCC 58.843 40.000 0.00 0.00 0.00 3.85
96 97 2.426522 TCCTTCTCACAAAATGCTCCG 58.573 47.619 0.00 0.00 0.00 4.63
97 98 3.129988 CCATCCTTCTCACAAAATGCTCC 59.870 47.826 0.00 0.00 0.00 4.70
125 126 0.819582 CAAAATCATGCCCGCTCCTT 59.180 50.000 0.00 0.00 0.00 3.36
163 164 2.267174 ATCGGCAAGATGGAAGATGG 57.733 50.000 0.00 0.00 38.36 3.51
179 180 6.470235 GCACTTGAACAAATATGAAGGAATCG 59.530 38.462 0.00 0.00 0.00 3.34
207 208 3.242518 CATGTCGTCGTTTCAGCTTCTA 58.757 45.455 0.00 0.00 0.00 2.10
208 209 2.061773 CATGTCGTCGTTTCAGCTTCT 58.938 47.619 0.00 0.00 0.00 2.85
250 251 2.023888 AGGCCATGTACTCCACTCTAGT 60.024 50.000 5.01 0.00 0.00 2.57
286 289 6.484643 ACATATCAATAATGACACTGCAGTCC 59.515 38.462 18.64 12.55 38.69 3.85
299 302 5.178623 CACGGTGGCGTAACATATCAATAAT 59.821 40.000 0.00 0.00 0.00 1.28
300 303 4.508492 CACGGTGGCGTAACATATCAATAA 59.492 41.667 0.00 0.00 0.00 1.40
301 304 4.052608 CACGGTGGCGTAACATATCAATA 58.947 43.478 0.00 0.00 0.00 1.90
320 323 0.739813 GGGGATCGGTTCAAGTCACG 60.740 60.000 0.00 0.00 0.00 4.35
341 344 1.816074 TCCTTGACAAATACGGCCAC 58.184 50.000 2.24 0.00 0.00 5.01
346 349 5.539582 TTTCCGATTCCTTGACAAATACG 57.460 39.130 0.00 0.00 0.00 3.06
348 351 7.013846 ACAGTTTTTCCGATTCCTTGACAAATA 59.986 33.333 0.00 0.00 0.00 1.40
350 353 5.126384 ACAGTTTTTCCGATTCCTTGACAAA 59.874 36.000 0.00 0.00 0.00 2.83
355 358 3.735746 GCAACAGTTTTTCCGATTCCTTG 59.264 43.478 0.00 0.00 0.00 3.61
363 366 2.181426 TGAACGCAACAGTTTTTCCG 57.819 45.000 0.00 0.00 34.00 4.30
365 368 4.619336 TCAACTTGAACGCAACAGTTTTTC 59.381 37.500 0.00 0.00 34.00 2.29
378 381 6.679327 AAAGTAGGTGTTCTCAACTTGAAC 57.321 37.500 0.00 0.00 38.64 3.18
394 397 8.822855 TGATTTATACATACGTGCAAAAGTAGG 58.177 33.333 0.00 7.91 0.00 3.18
426 429 1.885887 GGGCAAGTGCATGAACTACAA 59.114 47.619 6.81 0.00 44.36 2.41
448 451 2.731976 GCGAGACGTTGTCTTTCTCATT 59.268 45.455 0.38 0.00 43.53 2.57
467 470 0.593518 CTCAGCTAGATGGTCGTGCG 60.594 60.000 8.37 0.00 0.00 5.34
476 479 1.403687 GGGCCGTTCCTCAGCTAGAT 61.404 60.000 0.00 0.00 34.39 1.98
482 485 3.470888 ATCCGGGCCGTTCCTCAG 61.471 66.667 26.32 7.53 34.39 3.35
484 487 3.447025 CTCATCCGGGCCGTTCCTC 62.447 68.421 26.32 0.00 34.39 3.71
510 513 7.417612 TCTCAGCTTGAACATAACAGTTTTTC 58.582 34.615 0.00 0.00 0.00 2.29
528 531 6.600822 ACATGCAAAAGTATATGTTCTCAGCT 59.399 34.615 0.00 0.00 30.05 4.24
577 580 4.764823 TCCCATTTGGACAAGTGTATGAAC 59.235 41.667 0.00 0.00 38.61 3.18
636 639 0.397941 GATCAATCTCATCCGGGCCA 59.602 55.000 4.39 0.00 0.00 5.36
640 643 0.319728 AGCCGATCAATCTCATCCGG 59.680 55.000 0.00 0.00 0.00 5.14
642 645 2.141517 CACAGCCGATCAATCTCATCC 58.858 52.381 0.00 0.00 0.00 3.51
656 659 2.257691 ATCTGATGATCTGCACAGCC 57.742 50.000 0.00 0.00 0.00 4.85
719 722 4.701651 AGATGGCGTTTCATTCATCAAGAA 59.298 37.500 0.00 0.00 38.64 2.52
804 810 6.013554 AGCAGATTAATGGCTACCCTAAAA 57.986 37.500 8.97 0.00 35.82 1.52
808 814 4.526438 AAAGCAGATTAATGGCTACCCT 57.474 40.909 10.67 0.00 36.76 4.34
809 815 5.598416 AAAAAGCAGATTAATGGCTACCC 57.402 39.130 10.67 0.00 36.76 3.69
837 843 2.106511 GCAGATTAATGGCTACCCCTCA 59.893 50.000 0.00 0.00 0.00 3.86
839 845 2.107204 CAGCAGATTAATGGCTACCCCT 59.893 50.000 10.08 0.00 35.82 4.79
840 846 2.508526 CAGCAGATTAATGGCTACCCC 58.491 52.381 10.08 0.00 35.82 4.95
841 847 2.508526 CCAGCAGATTAATGGCTACCC 58.491 52.381 10.08 0.00 35.82 3.69
842 848 2.158608 ACCCAGCAGATTAATGGCTACC 60.159 50.000 10.08 0.00 35.82 3.18
843 849 2.880890 CACCCAGCAGATTAATGGCTAC 59.119 50.000 10.08 0.00 35.82 3.58
844 850 2.777114 TCACCCAGCAGATTAATGGCTA 59.223 45.455 10.08 0.00 35.82 3.93
866 872 3.662247 TCTCTCCTTCGGTTTTCTGTC 57.338 47.619 0.00 0.00 0.00 3.51
954 960 4.316823 AGGTGGGGCGAGGTGAGA 62.317 66.667 0.00 0.00 0.00 3.27
966 972 4.154347 GAGGAGCAGGCGAGGTGG 62.154 72.222 0.00 0.00 0.00 4.61
967 973 4.154347 GGAGGAGCAGGCGAGGTG 62.154 72.222 0.00 0.00 0.00 4.00
970 976 4.154347 GTGGGAGGAGCAGGCGAG 62.154 72.222 0.00 0.00 0.00 5.03
995 1001 0.841961 CATTGGGAGGAGCATGAGGA 59.158 55.000 0.00 0.00 0.00 3.71
1026 1032 1.958288 CTGGGAGGGAAGGAGAAGAA 58.042 55.000 0.00 0.00 0.00 2.52
1086 1092 2.047274 CCATGTTGTCGCCGGAGT 60.047 61.111 5.05 0.00 0.00 3.85
1114 1120 3.649277 CTGACGTCCTCCTTGCCGG 62.649 68.421 14.12 0.00 0.00 6.13
1191 1197 0.652592 GATTCGCTCCGGTCATTGTG 59.347 55.000 0.00 0.00 0.00 3.33
1278 1284 3.327754 CGGGCGGCGTAGAAATCG 61.328 66.667 9.37 0.00 0.00 3.34
1423 1429 7.228706 TCAGAAACCACTAAAACTTCAGGAATC 59.771 37.037 0.00 0.00 0.00 2.52
1486 1492 9.545105 TGTTTCTGGAGTACTATAAACGAAAAA 57.455 29.630 0.00 0.00 31.19 1.94
1657 1664 7.561021 TTTTGCTTTGTGTCTATGACAACTA 57.439 32.000 1.73 0.00 44.49 2.24
1658 1665 6.449635 TTTTGCTTTGTGTCTATGACAACT 57.550 33.333 1.73 0.00 44.49 3.16
1659 1666 7.698836 AATTTTGCTTTGTGTCTATGACAAC 57.301 32.000 1.73 0.00 44.49 3.32
1690 1697 6.531594 GGAGGCAAGTACAAAGCATAAATTTC 59.468 38.462 0.00 0.00 0.00 2.17
1697 1704 2.584835 TGGAGGCAAGTACAAAGCAT 57.415 45.000 0.00 0.00 0.00 3.79
1710 1717 0.179081 CTACCCGCTAGTTTGGAGGC 60.179 60.000 0.00 0.00 0.00 4.70
1711 1718 0.464452 CCTACCCGCTAGTTTGGAGG 59.536 60.000 0.00 0.00 0.00 4.30
1712 1719 1.481871 TCCTACCCGCTAGTTTGGAG 58.518 55.000 0.00 0.00 0.00 3.86
1820 1856 4.410555 GGCCCTATATAGATGGAAAGAGGG 59.589 50.000 11.53 3.52 44.52 4.30
1821 1857 5.284582 AGGCCCTATATAGATGGAAAGAGG 58.715 45.833 11.53 1.87 0.00 3.69
1822 1858 7.979786 TTAGGCCCTATATAGATGGAAAGAG 57.020 40.000 11.53 0.00 0.00 2.85
1823 1859 7.147479 GCATTAGGCCCTATATAGATGGAAAGA 60.147 40.741 11.53 0.00 36.11 2.52
1824 1860 6.995091 GCATTAGGCCCTATATAGATGGAAAG 59.005 42.308 11.53 0.00 36.11 2.62
1825 1861 6.408092 CGCATTAGGCCCTATATAGATGGAAA 60.408 42.308 11.53 1.08 40.31 3.13
1826 1862 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
1827 1863 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
1828 1864 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
1829 1865 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
1830 1866 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
1831 1867 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
1832 1868 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
1833 1869 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
1834 1870 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
1835 1871 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
1836 1872 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
1837 1873 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
1838 1874 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
1839 1875 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
1840 1876 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
1841 1877 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
1842 1878 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
1843 1879 4.092968 AGTTAGCCTCGAAAAACGCATTAG 59.907 41.667 0.00 0.00 42.26 1.73
1844 1880 3.998341 AGTTAGCCTCGAAAAACGCATTA 59.002 39.130 0.00 0.00 42.26 1.90
1845 1881 2.812011 AGTTAGCCTCGAAAAACGCATT 59.188 40.909 0.00 0.00 42.26 3.56
1846 1882 2.423577 AGTTAGCCTCGAAAAACGCAT 58.576 42.857 0.00 0.00 42.26 4.73
1847 1883 1.873698 AGTTAGCCTCGAAAAACGCA 58.126 45.000 0.00 0.00 42.26 5.24
1848 1884 2.963498 AAGTTAGCCTCGAAAAACGC 57.037 45.000 0.00 0.00 42.26 4.84
1849 1885 4.209112 GTCAAAGTTAGCCTCGAAAAACG 58.791 43.478 0.00 0.00 44.09 3.60
1850 1886 4.035909 TGGTCAAAGTTAGCCTCGAAAAAC 59.964 41.667 0.00 0.00 0.00 2.43
1851 1887 4.200874 TGGTCAAAGTTAGCCTCGAAAAA 58.799 39.130 0.00 0.00 0.00 1.94
1852 1888 3.811083 TGGTCAAAGTTAGCCTCGAAAA 58.189 40.909 0.00 0.00 0.00 2.29
1853 1889 3.478857 TGGTCAAAGTTAGCCTCGAAA 57.521 42.857 0.00 0.00 0.00 3.46
1854 1890 3.478857 TTGGTCAAAGTTAGCCTCGAA 57.521 42.857 0.00 0.00 0.00 3.71
1855 1891 3.478857 TTTGGTCAAAGTTAGCCTCGA 57.521 42.857 0.00 0.00 0.00 4.04
1856 1892 6.436843 AATATTTGGTCAAAGTTAGCCTCG 57.563 37.500 2.55 0.00 33.32 4.63
1857 1893 8.732746 TCTAATATTTGGTCAAAGTTAGCCTC 57.267 34.615 17.32 0.00 35.14 4.70
1858 1894 7.283354 GCTCTAATATTTGGTCAAAGTTAGCCT 59.717 37.037 17.32 0.41 35.14 4.58
1859 1895 7.067008 TGCTCTAATATTTGGTCAAAGTTAGCC 59.933 37.037 17.32 13.62 35.14 3.93
1860 1896 7.985476 TGCTCTAATATTTGGTCAAAGTTAGC 58.015 34.615 17.32 13.47 35.14 3.09
1879 1915 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
1880 1916 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
1889 1925 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
1890 1926 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
1891 1927 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
1892 1928 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
1893 1929 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
1894 1930 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
1895 1931 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
1896 1932 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
1897 1933 3.486841 GTGTGCTTTGTGTAAGTTGCATG 59.513 43.478 0.00 0.00 36.19 4.06
1898 1934 3.490761 GGTGTGCTTTGTGTAAGTTGCAT 60.491 43.478 0.00 0.00 36.19 3.96
1899 1935 2.159310 GGTGTGCTTTGTGTAAGTTGCA 60.159 45.455 0.00 0.00 36.19 4.08
1900 1936 2.459934 GGTGTGCTTTGTGTAAGTTGC 58.540 47.619 0.00 0.00 36.19 4.17
1901 1937 2.096819 ACGGTGTGCTTTGTGTAAGTTG 59.903 45.455 0.00 0.00 36.19 3.16
1902 1938 2.361789 ACGGTGTGCTTTGTGTAAGTT 58.638 42.857 0.00 0.00 36.19 2.66
1903 1939 2.032680 ACGGTGTGCTTTGTGTAAGT 57.967 45.000 0.00 0.00 36.19 2.24
1904 1940 4.539509 TTAACGGTGTGCTTTGTGTAAG 57.460 40.909 0.00 0.00 36.90 2.34
1905 1941 4.959596 TTTAACGGTGTGCTTTGTGTAA 57.040 36.364 0.00 0.00 0.00 2.41
1906 1942 5.502153 AATTTAACGGTGTGCTTTGTGTA 57.498 34.783 0.00 0.00 0.00 2.90
1907 1943 4.356289 GAATTTAACGGTGTGCTTTGTGT 58.644 39.130 0.00 0.00 0.00 3.72
1908 1944 3.420576 CGAATTTAACGGTGTGCTTTGTG 59.579 43.478 0.00 0.00 0.00 3.33
1909 1945 3.065648 ACGAATTTAACGGTGTGCTTTGT 59.934 39.130 0.00 0.00 34.93 2.83
1910 1946 3.420576 CACGAATTTAACGGTGTGCTTTG 59.579 43.478 0.00 0.00 34.93 2.77
1911 1947 3.065648 ACACGAATTTAACGGTGTGCTTT 59.934 39.130 0.00 0.00 34.93 3.51
1912 1948 2.614983 ACACGAATTTAACGGTGTGCTT 59.385 40.909 0.00 0.00 34.93 3.91
1913 1949 2.032377 CACACGAATTTAACGGTGTGCT 60.032 45.455 9.81 0.00 36.70 4.40
1914 1950 2.286536 ACACACGAATTTAACGGTGTGC 60.287 45.455 19.53 0.00 41.40 4.57
1915 1951 3.284914 CACACACGAATTTAACGGTGTG 58.715 45.455 18.39 18.39 45.49 3.82
1916 1952 3.196463 TCACACACGAATTTAACGGTGT 58.804 40.909 0.00 0.00 41.61 4.16
1917 1953 3.863396 TCACACACGAATTTAACGGTG 57.137 42.857 0.00 0.00 37.66 4.94
1918 1954 4.260866 CCTTTCACACACGAATTTAACGGT 60.261 41.667 0.00 0.00 34.93 4.83
1919 1955 4.024725 TCCTTTCACACACGAATTTAACGG 60.025 41.667 0.00 0.00 34.93 4.44
1920 1956 5.085636 TCCTTTCACACACGAATTTAACG 57.914 39.130 0.00 0.00 0.00 3.18
1921 1957 4.909880 GCTCCTTTCACACACGAATTTAAC 59.090 41.667 0.00 0.00 0.00 2.01
1922 1958 4.819630 AGCTCCTTTCACACACGAATTTAA 59.180 37.500 0.00 0.00 0.00 1.52
1923 1959 4.385825 AGCTCCTTTCACACACGAATTTA 58.614 39.130 0.00 0.00 0.00 1.40
1924 1960 3.214328 AGCTCCTTTCACACACGAATTT 58.786 40.909 0.00 0.00 0.00 1.82
1925 1961 2.851195 AGCTCCTTTCACACACGAATT 58.149 42.857 0.00 0.00 0.00 2.17
1926 1962 2.550830 AGCTCCTTTCACACACGAAT 57.449 45.000 0.00 0.00 0.00 3.34
1927 1963 2.325583 AAGCTCCTTTCACACACGAA 57.674 45.000 0.00 0.00 0.00 3.85
1928 1964 2.210116 GAAAGCTCCTTTCACACACGA 58.790 47.619 11.65 0.00 46.23 4.35
1929 1965 2.670401 GAAAGCTCCTTTCACACACG 57.330 50.000 11.65 0.00 46.23 4.49
1965 2001 9.603298 GATTAATAGTACATGACATGCACAATG 57.397 33.333 18.79 0.00 42.48 2.82
1966 2002 9.565090 AGATTAATAGTACATGACATGCACAAT 57.435 29.630 18.79 10.52 0.00 2.71
1967 2003 8.962884 AGATTAATAGTACATGACATGCACAA 57.037 30.769 18.79 6.65 0.00 3.33
1968 2004 8.829612 CAAGATTAATAGTACATGACATGCACA 58.170 33.333 18.79 7.29 0.00 4.57
1969 2005 8.830580 ACAAGATTAATAGTACATGACATGCAC 58.169 33.333 15.49 12.79 0.00 4.57
1970 2006 8.962884 ACAAGATTAATAGTACATGACATGCA 57.037 30.769 15.49 0.00 0.00 3.96
1971 2007 9.045223 TGACAAGATTAATAGTACATGACATGC 57.955 33.333 15.49 0.11 0.00 4.06
1985 2021 8.960591 CCACCTTTGACTATTGACAAGATTAAT 58.039 33.333 0.00 0.00 0.00 1.40
1986 2022 7.942341 ACCACCTTTGACTATTGACAAGATTAA 59.058 33.333 0.00 0.00 0.00 1.40
1987 2023 7.458397 ACCACCTTTGACTATTGACAAGATTA 58.542 34.615 0.00 0.00 0.00 1.75
1988 2024 6.306987 ACCACCTTTGACTATTGACAAGATT 58.693 36.000 0.00 0.00 0.00 2.40
1989 2025 5.880901 ACCACCTTTGACTATTGACAAGAT 58.119 37.500 0.00 0.00 0.00 2.40
1990 2026 5.071788 AGACCACCTTTGACTATTGACAAGA 59.928 40.000 0.00 0.00 0.00 3.02
1991 2027 5.308825 AGACCACCTTTGACTATTGACAAG 58.691 41.667 0.00 0.00 0.00 3.16
1992 2028 5.304686 AGACCACCTTTGACTATTGACAA 57.695 39.130 0.00 0.00 0.00 3.18
1993 2029 4.974645 AGACCACCTTTGACTATTGACA 57.025 40.909 0.00 0.00 0.00 3.58
1994 2030 7.739498 TTTAAGACCACCTTTGACTATTGAC 57.261 36.000 0.00 0.00 36.34 3.18
1995 2031 8.754991 TTTTTAAGACCACCTTTGACTATTGA 57.245 30.769 0.00 0.00 36.34 2.57
2017 2053 9.520515 CATCTATATAGGGCCTAATGTGTTTTT 57.479 33.333 18.91 0.00 0.00 1.94
2018 2054 8.109634 CCATCTATATAGGGCCTAATGTGTTTT 58.890 37.037 18.91 0.30 0.00 2.43
2019 2055 7.461043 TCCATCTATATAGGGCCTAATGTGTTT 59.539 37.037 18.91 1.12 0.00 2.83
2020 2056 6.965866 TCCATCTATATAGGGCCTAATGTGTT 59.034 38.462 18.91 1.94 0.00 3.32
2021 2057 6.512120 TCCATCTATATAGGGCCTAATGTGT 58.488 40.000 18.91 2.76 0.00 3.72
2022 2058 7.419518 CCTTCCATCTATATAGGGCCTAATGTG 60.420 44.444 18.91 10.40 0.00 3.21
2023 2059 6.617371 CCTTCCATCTATATAGGGCCTAATGT 59.383 42.308 18.91 9.02 0.00 2.71
2024 2060 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
2025 2061 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
2026 2062 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
2027 2063 6.385443 CATCCTTCCATCTATATAGGGCCTA 58.615 44.000 17.16 17.16 0.00 3.93
2028 2064 4.994411 TCCTTCCATCTATATAGGGCCT 57.006 45.455 12.58 12.58 0.00 5.19
2029 2065 4.349342 CCATCCTTCCATCTATATAGGGCC 59.651 50.000 9.89 0.00 0.00 5.80
2030 2066 5.219739 TCCATCCTTCCATCTATATAGGGC 58.780 45.833 9.89 0.00 0.00 5.19
2031 2067 6.448202 ACTCCATCCTTCCATCTATATAGGG 58.552 44.000 9.89 4.49 0.00 3.53
2032 2068 8.285891 AGTACTCCATCCTTCCATCTATATAGG 58.714 40.741 9.89 0.00 0.00 2.57
2036 2072 9.702253 GATTAGTACTCCATCCTTCCATCTATA 57.298 37.037 0.00 0.00 0.00 1.31
2037 2073 8.180165 TGATTAGTACTCCATCCTTCCATCTAT 58.820 37.037 0.00 0.00 0.00 1.98
2038 2074 7.535738 TGATTAGTACTCCATCCTTCCATCTA 58.464 38.462 0.00 0.00 0.00 1.98
2039 2075 6.385443 TGATTAGTACTCCATCCTTCCATCT 58.615 40.000 0.00 0.00 0.00 2.90
2040 2076 6.672266 TGATTAGTACTCCATCCTTCCATC 57.328 41.667 0.00 0.00 0.00 3.51
2041 2077 7.348274 TCTTTGATTAGTACTCCATCCTTCCAT 59.652 37.037 0.00 0.00 0.00 3.41
2042 2078 6.672218 TCTTTGATTAGTACTCCATCCTTCCA 59.328 38.462 0.00 0.00 0.00 3.53
2043 2079 6.987404 GTCTTTGATTAGTACTCCATCCTTCC 59.013 42.308 0.00 0.00 0.00 3.46
2044 2080 6.697892 CGTCTTTGATTAGTACTCCATCCTTC 59.302 42.308 0.00 0.00 0.00 3.46
2045 2081 6.574350 CGTCTTTGATTAGTACTCCATCCTT 58.426 40.000 0.00 0.00 0.00 3.36
2046 2082 5.452077 GCGTCTTTGATTAGTACTCCATCCT 60.452 44.000 0.00 0.00 0.00 3.24
2047 2083 4.745620 GCGTCTTTGATTAGTACTCCATCC 59.254 45.833 0.00 0.00 0.00 3.51
2048 2084 4.745620 GGCGTCTTTGATTAGTACTCCATC 59.254 45.833 0.00 3.24 0.00 3.51
2049 2085 4.443034 GGGCGTCTTTGATTAGTACTCCAT 60.443 45.833 0.00 0.00 0.00 3.41
2050 2086 3.118884 GGGCGTCTTTGATTAGTACTCCA 60.119 47.826 0.00 0.00 0.00 3.86
2051 2087 3.132467 AGGGCGTCTTTGATTAGTACTCC 59.868 47.826 0.00 0.00 0.00 3.85
2052 2088 4.388378 AGGGCGTCTTTGATTAGTACTC 57.612 45.455 0.00 0.00 0.00 2.59
2053 2089 4.820894 AAGGGCGTCTTTGATTAGTACT 57.179 40.909 0.00 0.00 29.99 2.73
2054 2090 6.047231 ACATAAGGGCGTCTTTGATTAGTAC 58.953 40.000 0.00 0.00 36.93 2.73
2055 2091 6.229936 ACATAAGGGCGTCTTTGATTAGTA 57.770 37.500 0.00 0.00 36.93 1.82
2056 2092 5.099042 ACATAAGGGCGTCTTTGATTAGT 57.901 39.130 0.00 0.00 36.93 2.24
2057 2093 6.093495 TGAAACATAAGGGCGTCTTTGATTAG 59.907 38.462 0.00 0.00 36.93 1.73
2058 2094 5.941058 TGAAACATAAGGGCGTCTTTGATTA 59.059 36.000 0.00 0.00 36.93 1.75
2131 2170 6.866770 CAGAAATTGAATTGAACTGCAGACAT 59.133 34.615 23.35 5.87 0.00 3.06
2137 2176 5.566774 CGACTCAGAAATTGAATTGAACTGC 59.433 40.000 12.04 0.00 34.81 4.40
2170 2209 4.164981 TGAAGTTCCTTCCCTGCTACTAA 58.835 43.478 0.00 0.00 39.51 2.24
2176 2215 2.519013 ACAATGAAGTTCCTTCCCTGC 58.481 47.619 0.00 0.00 39.51 4.85
2194 2233 3.832490 AGTGTGTGTATCTAGGAGCAACA 59.168 43.478 0.00 0.00 0.00 3.33
2199 2238 7.886338 TGCAATATAGTGTGTGTATCTAGGAG 58.114 38.462 1.67 0.00 0.00 3.69
2225 2264 5.009610 GTGGTAAAATCAAACAGGCAGAGAA 59.990 40.000 0.00 0.00 0.00 2.87
2229 2268 4.582701 TGTGGTAAAATCAAACAGGCAG 57.417 40.909 0.00 0.00 0.00 4.85
2247 2286 4.631377 ACAATACACGGACTTCATCATGTG 59.369 41.667 0.00 0.00 39.75 3.21
2422 2464 0.542333 CCCATGCCCATTTGATTGCA 59.458 50.000 0.00 0.00 38.23 4.08
2517 2559 7.500141 ACATGGCAATATTTTCCAGATAAACC 58.500 34.615 10.84 0.00 32.78 3.27
2532 2574 3.354948 ACAAGCAGAGACATGGCAATA 57.645 42.857 0.00 0.00 0.00 1.90
2546 2588 7.823799 TGAACAACATCTCTATGATAACAAGCA 59.176 33.333 0.00 0.00 36.54 3.91
2629 2671 7.919690 GCTGAAGCTTGACATAACAATGTATA 58.080 34.615 2.10 0.00 38.21 1.47
2696 2738 6.757897 TGCCTTGTCTGATAGTTAAAATGG 57.242 37.500 0.00 0.00 0.00 3.16
2714 2756 4.740902 AGTAAAGTGGATTCCTTTGCCTT 58.259 39.130 3.95 0.00 35.80 4.35
2757 2799 6.194967 CCCAAAAAGTTCAGGGGACTATAAT 58.805 40.000 0.00 0.00 41.49 1.28
2861 2903 2.026542 AGCATCCACATGTGATGTCAGT 60.027 45.455 27.46 11.28 42.70 3.41
2916 2958 0.108615 CCTGGCCGACTACTCAACAG 60.109 60.000 0.00 0.00 0.00 3.16
2986 3028 1.152355 CCCCAGGCTGGTTTTGGAA 60.152 57.895 30.68 0.00 35.17 3.53
3358 3400 6.240894 AGCATGTTCTAAAGATTCCACAGAA 58.759 36.000 0.00 0.00 36.15 3.02
3393 3435 2.505557 GCAGGAATGCTGTTGCGC 60.506 61.111 0.00 0.00 43.34 6.09
3439 3481 8.617761 ACAAATTTCACAAACAAAATGAATGC 57.382 26.923 0.00 0.00 32.61 3.56
3872 3914 4.665833 TGATACCAAACACGATCCCTAG 57.334 45.455 0.00 0.00 0.00 3.02
3941 3983 8.604890 AGAAGAAATTCGTTGCTATAAGCTTAC 58.395 33.333 8.70 0.00 42.97 2.34
3967 4009 7.027874 ACACCAACCTGGATAGAATAAGAAA 57.972 36.000 0.00 0.00 40.96 2.52
3969 4011 6.099269 GGTACACCAACCTGGATAGAATAAGA 59.901 42.308 0.00 0.00 40.96 2.10
4125 4167 4.573900 ACCATCGATGCCATAGAATCTTC 58.426 43.478 20.25 0.00 0.00 2.87
4518 4563 7.719871 ATCAGCTTTACTGTAGGAAACTAGA 57.280 36.000 0.00 0.00 45.49 2.43
4543 4588 8.814038 ACTTTAAGATTTGTCCTCATAGCATT 57.186 30.769 0.00 0.00 0.00 3.56
4842 4887 4.321899 GGATCTATCTCACTGCTAAGGCTG 60.322 50.000 0.00 0.00 42.04 4.85
4907 4952 1.815003 CAAATCGCAGCTCTTCCCTTT 59.185 47.619 0.00 0.00 0.00 3.11
4995 5040 3.282021 GCAAGGCTTGTCTCCAATATCA 58.718 45.455 26.71 0.00 0.00 2.15
4997 5042 2.243221 AGGCAAGGCTTGTCTCCAATAT 59.757 45.455 27.77 5.06 43.25 1.28
4998 5043 1.635487 AGGCAAGGCTTGTCTCCAATA 59.365 47.619 27.77 0.00 43.25 1.90
4999 5044 0.407139 AGGCAAGGCTTGTCTCCAAT 59.593 50.000 27.77 6.63 43.25 3.16
5000 5045 1.064003 TAGGCAAGGCTTGTCTCCAA 58.936 50.000 35.35 17.67 43.25 3.53
5001 5046 1.210478 GATAGGCAAGGCTTGTCTCCA 59.790 52.381 35.35 21.13 43.25 3.86
5002 5047 1.488393 AGATAGGCAAGGCTTGTCTCC 59.512 52.381 35.35 26.55 43.25 3.71
5003 5048 2.559440 CAGATAGGCAAGGCTTGTCTC 58.441 52.381 35.35 22.90 43.25 3.36
5091 5136 3.235157 TCAATAGTAACACCCCGTTCG 57.765 47.619 0.00 0.00 39.14 3.95
5278 5323 8.893563 TCTACTGGGTTTCCATTGATTAAAAT 57.106 30.769 0.00 0.00 43.11 1.82
5286 5331 6.345096 ACATTTTCTACTGGGTTTCCATTG 57.655 37.500 0.00 0.00 43.11 2.82
5385 5430 9.387397 TCTCCATACACATATAGGAAACCATTA 57.613 33.333 0.00 0.00 0.00 1.90
5395 5440 6.071108 CCACCTTCCTCTCCATACACATATAG 60.071 46.154 0.00 0.00 0.00 1.31
5628 5673 7.966246 AATGCATGAAAACAGAAGCAAAATA 57.034 28.000 0.00 0.00 35.45 1.40
5672 5717 0.387622 CAAAAGCACACAGATGGCCG 60.388 55.000 0.00 0.00 0.00 6.13
5750 5795 3.954904 TGTTTAAAGCCAGTAAAGGTGCA 59.045 39.130 0.00 0.00 0.00 4.57
5807 5852 1.415659 GCTATCAGAGGACACCAGCAT 59.584 52.381 0.00 0.00 0.00 3.79
5840 5885 5.764686 TGCAGACAGTCAGACATTTTATGTT 59.235 36.000 2.66 0.00 45.03 2.71
5847 5912 4.077300 TCTTTGCAGACAGTCAGACATT 57.923 40.909 2.66 0.00 0.00 2.71
5850 5915 3.397482 ACATCTTTGCAGACAGTCAGAC 58.603 45.455 2.66 0.00 0.00 3.51
5852 5917 4.993584 AGTAACATCTTTGCAGACAGTCAG 59.006 41.667 2.66 0.00 0.00 3.51
5853 5918 4.960938 AGTAACATCTTTGCAGACAGTCA 58.039 39.130 2.66 0.00 0.00 3.41
5854 5919 4.090642 CGAGTAACATCTTTGCAGACAGTC 59.909 45.833 0.00 0.00 0.00 3.51
5855 5920 3.990469 CGAGTAACATCTTTGCAGACAGT 59.010 43.478 0.00 0.00 0.00 3.55
5856 5921 3.990469 ACGAGTAACATCTTTGCAGACAG 59.010 43.478 0.00 0.00 0.00 3.51
5857 5922 3.990092 ACGAGTAACATCTTTGCAGACA 58.010 40.909 0.00 0.00 0.00 3.41
5858 5923 5.634020 AGTTACGAGTAACATCTTTGCAGAC 59.366 40.000 23.05 0.00 45.79 3.51
5859 5924 5.633601 CAGTTACGAGTAACATCTTTGCAGA 59.366 40.000 23.05 0.00 45.79 4.26
5860 5925 5.163953 CCAGTTACGAGTAACATCTTTGCAG 60.164 44.000 23.05 3.00 45.79 4.41
5861 5926 4.688879 CCAGTTACGAGTAACATCTTTGCA 59.311 41.667 23.05 0.00 45.79 4.08
5862 5927 4.435651 GCCAGTTACGAGTAACATCTTTGC 60.436 45.833 23.05 13.70 45.79 3.68
5863 5928 4.688879 TGCCAGTTACGAGTAACATCTTTG 59.311 41.667 23.05 14.04 45.79 2.77
5864 5929 4.890088 TGCCAGTTACGAGTAACATCTTT 58.110 39.130 23.05 4.46 45.79 2.52
5865 5930 4.530710 TGCCAGTTACGAGTAACATCTT 57.469 40.909 23.05 4.77 45.79 2.40
5866 5931 4.159693 TCATGCCAGTTACGAGTAACATCT 59.840 41.667 23.05 5.08 45.79 2.90
5867 5932 4.430007 TCATGCCAGTTACGAGTAACATC 58.570 43.478 23.05 13.78 45.79 3.06
5868 5933 4.465632 TCATGCCAGTTACGAGTAACAT 57.534 40.909 23.05 9.14 45.79 2.71
5869 5934 3.945981 TCATGCCAGTTACGAGTAACA 57.054 42.857 23.05 7.47 45.79 2.41
5870 5935 6.700081 TGATATTCATGCCAGTTACGAGTAAC 59.300 38.462 16.00 16.00 44.22 2.50
5871 5936 6.811954 TGATATTCATGCCAGTTACGAGTAA 58.188 36.000 0.00 0.00 0.00 2.24
5872 5937 6.040504 ACTGATATTCATGCCAGTTACGAGTA 59.959 38.462 0.00 0.00 36.57 2.59
5873 5938 5.163405 ACTGATATTCATGCCAGTTACGAGT 60.163 40.000 0.00 0.00 36.57 4.18
5876 5941 5.049828 TCACTGATATTCATGCCAGTTACG 58.950 41.667 0.00 0.00 37.74 3.18
5898 5963 5.456265 GTCACAAAGAGCTCATTTCCTTTC 58.544 41.667 17.77 0.00 0.00 2.62
5954 6019 6.488006 AGGCAACAGTAATATCATCATGTTCC 59.512 38.462 0.00 0.00 41.41 3.62
6014 6079 2.614481 GGTGCAATCGGTAACTTCCTGA 60.614 50.000 0.00 0.00 0.00 3.86
6169 6234 0.527565 CAAAAGCCACAAGGGATCCG 59.472 55.000 5.45 0.00 40.01 4.18
6196 6261 4.388773 CGATGGAAACTGAAGTCAAATCGA 59.611 41.667 10.05 0.00 37.23 3.59
6235 6300 9.039165 ACCAATGATTCAATTTCCAGTAATTCT 57.961 29.630 0.00 0.00 0.00 2.40
6238 6303 8.365060 TCACCAATGATTCAATTTCCAGTAAT 57.635 30.769 0.00 0.00 0.00 1.89
6361 6426 6.988622 TTATAAATACCAACCTGTTCACCG 57.011 37.500 0.00 0.00 0.00 4.94
6386 6451 9.311916 CTTAATTTCCAGTGTCATTTGTTTTGA 57.688 29.630 0.00 0.00 0.00 2.69
6398 6463 9.461312 TTGCTGTAATATCTTAATTTCCAGTGT 57.539 29.630 0.00 0.00 0.00 3.55
6425 6490 6.598850 TGCTGTCATATGACTTTGCAGAAATA 59.401 34.615 30.67 15.04 44.99 1.40
6444 6509 3.764885 ATTTAAACATCGCCTGCTGTC 57.235 42.857 0.00 0.00 0.00 3.51
6451 6516 8.495148 AGAATTCACAAAAATTTAAACATCGCC 58.505 29.630 8.44 0.00 0.00 5.54
6686 6752 5.535406 CGATGAGTAGGACCATACCTTAAGT 59.465 44.000 0.97 0.00 41.00 2.24
7102 7177 1.134699 TCTATGGCAGACGCAAGGAAG 60.135 52.381 0.00 0.00 46.39 3.46
7219 7294 4.982916 TCTCGCTGTTCTTAGTTCTTCAAC 59.017 41.667 0.00 0.00 0.00 3.18
7358 7433 4.737855 ACAGTAAGTAGGGTGCATACAG 57.262 45.455 0.00 0.00 0.00 2.74
7359 7434 5.126545 CAGTACAGTAAGTAGGGTGCATACA 59.873 44.000 0.00 0.00 32.19 2.29
7442 7518 6.707440 TTTAGAAGAGGTTGCAAATGTGAA 57.293 33.333 0.00 0.00 0.00 3.18
7460 7536 7.606456 GGATCCTACACAACACAGATTTTTAGA 59.394 37.037 3.84 0.00 0.00 2.10
7677 7753 0.586502 CGCCGCAAAGTTTCGCTATC 60.587 55.000 7.94 0.00 0.00 2.08
7734 7810 0.832135 AGTTCTCTGGCTTCCGACCA 60.832 55.000 0.00 0.00 35.40 4.02
7755 7831 1.369321 CTTCTCTAGGGCATCCGGC 59.631 63.158 0.00 0.00 43.74 6.13
7798 7874 5.124645 AGATCAGCTGGCTTTTGAAGATAG 58.875 41.667 15.13 0.00 0.00 2.08
7869 7945 6.440328 AGAAAGGGGCAACAATTTACATATGT 59.560 34.615 13.93 13.93 39.74 2.29
7963 8040 4.463539 TGCGTATACCACTTGGAAGAAGTA 59.536 41.667 1.14 0.00 38.94 2.24
8047 8125 6.045318 CCTATGTACTCCAGCATATATGTGC 58.955 44.000 16.01 16.01 45.38 4.57
8048 8126 7.175347 ACCTATGTACTCCAGCATATATGTG 57.825 40.000 14.14 10.49 0.00 3.21
8049 8127 7.798710 AACCTATGTACTCCAGCATATATGT 57.201 36.000 14.14 0.00 0.00 2.29
8050 8128 7.550551 CCAAACCTATGTACTCCAGCATATATG 59.449 40.741 8.45 8.45 0.00 1.78
8071 8149 1.934589 GTTGCAAACTGGACCCAAAC 58.065 50.000 0.00 0.00 45.32 2.93
8226 8392 1.226746 AGCTTTGTCCCTTTCGTTCG 58.773 50.000 0.00 0.00 0.00 3.95
8244 8410 4.346418 AGAAACAGGGATCTAGCACCATAG 59.654 45.833 7.20 0.00 0.00 2.23
8340 8507 5.652014 CCTGATAAACAAGTAGCCAAATGGA 59.348 40.000 2.98 0.00 37.39 3.41
8410 8577 2.119495 ACGCACTCTTTGGATATCCCT 58.881 47.619 19.34 0.00 35.38 4.20
8411 8578 2.213499 CACGCACTCTTTGGATATCCC 58.787 52.381 19.34 1.87 34.29 3.85
8412 8579 2.213499 CCACGCACTCTTTGGATATCC 58.787 52.381 15.39 15.39 31.39 2.59
8428 8595 7.063074 CACCAAAAGAGAAATACTACTACCACG 59.937 40.741 0.00 0.00 0.00 4.94
8471 10776 8.196771 TCAAAAGTGCAATTTGTTCTGTAATCT 58.803 29.630 13.56 0.00 38.57 2.40
8603 10908 9.195411 GCTCATGAAAACAATGTAAATCTTTGA 57.805 29.630 0.00 0.00 35.84 2.69
8657 10962 3.048337 AGGCATGCATTGAAAAAGTGG 57.952 42.857 21.36 0.00 0.00 4.00
8666 10971 3.048337 ACAAAGGAAAGGCATGCATTG 57.952 42.857 19.57 8.17 0.00 2.82
8673 10978 3.073798 TCTGGACATACAAAGGAAAGGCA 59.926 43.478 0.00 0.00 0.00 4.75
8766 11071 9.126151 TCCGAAGTGCATAATTAATTATTTCCA 57.874 29.630 16.47 11.63 30.91 3.53
8789 11094 7.762615 TGACTAAAACTATGTTAACCTGATCCG 59.237 37.037 2.48 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.