Multiple sequence alignment - TraesCS7D01G199000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G199000 chr7D 100.000 3867 0 0 1 3867 156010008 156013874 0.000000e+00 7142.0
1 TraesCS7D01G199000 chr7D 88.516 566 56 7 1139 1696 156023217 156023781 0.000000e+00 676.0
2 TraesCS7D01G199000 chr7D 81.636 697 63 30 412 1085 156022566 156023220 5.730000e-143 518.0
3 TraesCS7D01G199000 chr7D 82.944 557 53 17 2321 2837 156029239 156029793 7.570000e-127 464.0
4 TraesCS7D01G199000 chr7D 88.088 319 26 4 2013 2328 156024094 156024403 6.100000e-98 368.0
5 TraesCS7D01G199000 chr7B 91.667 1296 69 11 550 1820 117784640 117785921 0.000000e+00 1759.0
6 TraesCS7D01G199000 chr7B 85.234 1219 107 29 1991 3141 117785910 117787123 0.000000e+00 1186.0
7 TraesCS7D01G199000 chr7B 91.697 554 41 4 1 551 117783927 117784478 0.000000e+00 763.0
8 TraesCS7D01G199000 chr7A 88.734 1074 78 17 769 1820 210578669 210577617 0.000000e+00 1273.0
9 TraesCS7D01G199000 chr7A 81.356 944 86 35 1992 2880 210577627 210576719 0.000000e+00 686.0
10 TraesCS7D01G199000 chr7A 79.321 324 34 16 412 730 210580527 210580232 3.050000e-46 196.0
11 TraesCS7D01G199000 chr7A 86.420 81 9 2 2881 2960 632566662 632566583 1.910000e-13 87.9
12 TraesCS7D01G199000 chr1B 86.777 1089 82 25 771 1820 346641500 346642565 0.000000e+00 1157.0
13 TraesCS7D01G199000 chr1B 84.729 203 15 6 1991 2177 346642554 346642756 5.100000e-44 189.0
14 TraesCS7D01G199000 chr5A 83.235 507 56 15 3155 3640 9665176 9664678 4.590000e-119 438.0
15 TraesCS7D01G199000 chr5A 86.207 261 29 5 2881 3141 606313073 606312820 3.810000e-70 276.0
16 TraesCS7D01G199000 chr3B 79.089 593 67 26 3154 3707 825320487 825319913 4.750000e-94 355.0
17 TraesCS7D01G199000 chr3B 79.727 513 61 16 3154 3628 825333162 825332655 8.010000e-87 331.0
18 TraesCS7D01G199000 chr3B 83.406 229 21 9 3442 3658 489682038 489681815 3.050000e-46 196.0
19 TraesCS7D01G199000 chr3B 81.890 127 16 1 3699 3825 493346794 493346913 2.460000e-17 100.0
20 TraesCS7D01G199000 chrUn 79.727 513 61 16 3154 3628 41147712 41148219 8.010000e-87 331.0
21 TraesCS7D01G199000 chrUn 79.727 513 61 16 3154 3628 211783383 211783890 8.010000e-87 331.0
22 TraesCS7D01G199000 chrUn 79.727 513 61 16 3154 3628 220504153 220504660 8.010000e-87 331.0
23 TraesCS7D01G199000 chr6A 78.897 526 83 9 3158 3663 553428739 553429256 8.010000e-87 331.0
24 TraesCS7D01G199000 chr1D 76.319 739 106 38 3158 3843 224456268 224456990 8.010000e-87 331.0
25 TraesCS7D01G199000 chr2B 88.043 276 27 4 2870 3141 628412971 628412698 4.820000e-84 322.0
26 TraesCS7D01G199000 chr2B 83.951 81 11 2 2881 2960 773358631 773358552 4.140000e-10 76.8
27 TraesCS7D01G199000 chr6D 88.123 261 24 5 2881 3141 253841958 253841705 1.750000e-78 303.0
28 TraesCS7D01G199000 chr2D 87.739 261 25 5 2881 3141 620318320 620318067 8.120000e-77 298.0
29 TraesCS7D01G199000 chr2D 87.452 263 24 6 2880 3141 529041753 529041499 1.050000e-75 294.0
30 TraesCS7D01G199000 chr2A 86.957 207 20 3 2870 3074 673967282 673967081 3.890000e-55 226.0
31 TraesCS7D01G199000 chr3D 79.624 319 34 10 3278 3585 514346812 514346514 2.360000e-47 200.0
32 TraesCS7D01G199000 chr3D 85.000 80 10 2 2882 2960 569107616 569107538 3.200000e-11 80.5
33 TraesCS7D01G199000 chr5B 74.904 522 88 21 3150 3655 291888171 291887677 8.470000e-47 198.0
34 TraesCS7D01G199000 chr4A 75.464 485 73 21 911 1375 646294236 646293778 1.100000e-45 195.0
35 TraesCS7D01G199000 chr6B 83.010 206 29 4 3460 3663 639101803 639102004 8.530000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G199000 chr7D 156010008 156013874 3866 False 7142.000000 7142 100.000000 1 3867 1 chr7D.!!$F1 3866
1 TraesCS7D01G199000 chr7D 156022566 156024403 1837 False 520.666667 676 86.080000 412 2328 3 chr7D.!!$F3 1916
2 TraesCS7D01G199000 chr7D 156029239 156029793 554 False 464.000000 464 82.944000 2321 2837 1 chr7D.!!$F2 516
3 TraesCS7D01G199000 chr7B 117783927 117787123 3196 False 1236.000000 1759 89.532667 1 3141 3 chr7B.!!$F1 3140
4 TraesCS7D01G199000 chr7A 210576719 210580527 3808 True 718.333333 1273 83.137000 412 2880 3 chr7A.!!$R2 2468
5 TraesCS7D01G199000 chr1B 346641500 346642756 1256 False 673.000000 1157 85.753000 771 2177 2 chr1B.!!$F1 1406
6 TraesCS7D01G199000 chr3B 825319913 825320487 574 True 355.000000 355 79.089000 3154 3707 1 chr3B.!!$R2 553
7 TraesCS7D01G199000 chr3B 825332655 825333162 507 True 331.000000 331 79.727000 3154 3628 1 chr3B.!!$R3 474
8 TraesCS7D01G199000 chrUn 41147712 41148219 507 False 331.000000 331 79.727000 3154 3628 1 chrUn.!!$F1 474
9 TraesCS7D01G199000 chrUn 211783383 211783890 507 False 331.000000 331 79.727000 3154 3628 1 chrUn.!!$F2 474
10 TraesCS7D01G199000 chrUn 220504153 220504660 507 False 331.000000 331 79.727000 3154 3628 1 chrUn.!!$F3 474
11 TraesCS7D01G199000 chr6A 553428739 553429256 517 False 331.000000 331 78.897000 3158 3663 1 chr6A.!!$F1 505
12 TraesCS7D01G199000 chr1D 224456268 224456990 722 False 331.000000 331 76.319000 3158 3843 1 chr1D.!!$F1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 2628 0.036010 AATTGTCTCCTGTGAGGCCG 60.036 55.0 0.0 0.0 42.81 6.13 F
1568 3325 0.394565 GAGGAGAGTGGTGTGCTTGT 59.605 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 3786 0.036164 AAGCTCCACCGTTGCATGTA 59.964 50.0 0.00 0.00 0.0 2.29 R
3279 5336 0.110869 TTTTTACCTCCACCGTGGGG 59.889 55.0 17.76 14.49 37.9 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.656069 GCGGCTGGTCTAGGTCCAA 61.656 63.158 8.47 0.00 34.35 3.53
20 21 1.517832 CGGCTGGTCTAGGTCCAAG 59.482 63.158 8.47 5.18 34.35 3.61
50 51 2.960170 CGTCCCCTTCTCGACGTT 59.040 61.111 0.00 0.00 45.20 3.99
97 98 0.463295 CAGCTGGCCTGTTCATCGAT 60.463 55.000 5.57 0.00 36.79 3.59
98 99 0.254178 AGCTGGCCTGTTCATCGATT 59.746 50.000 11.69 0.00 0.00 3.34
99 100 0.659957 GCTGGCCTGTTCATCGATTC 59.340 55.000 11.69 0.00 0.00 2.52
100 101 2.013563 GCTGGCCTGTTCATCGATTCA 61.014 52.381 11.69 0.00 0.00 2.57
116 118 3.243035 CGATTCACAAAGTCTTGTTGGCA 60.243 43.478 0.00 0.00 43.45 4.92
123 125 5.034623 ACAAAGTCTTGTTGGCAATGATGC 61.035 41.667 1.92 0.00 46.71 3.91
140 142 2.291209 TGCTTCTTTGGATCTGGCAA 57.709 45.000 0.00 0.00 0.00 4.52
142 144 2.756760 TGCTTCTTTGGATCTGGCAATC 59.243 45.455 0.00 0.00 0.00 2.67
165 167 0.458197 CAGGCTCAGCGTCTCTTCTG 60.458 60.000 0.00 0.00 0.00 3.02
177 179 1.681264 TCTCTTCTGTTGTGCGACTCA 59.319 47.619 0.00 0.00 0.00 3.41
180 182 1.524355 CTTCTGTTGTGCGACTCAGTG 59.476 52.381 0.00 0.00 0.00 3.66
195 197 0.886490 CAGTGACACTGGAGTTGGGC 60.886 60.000 25.22 0.00 42.35 5.36
199 201 4.641645 CACTGGAGTTGGGCGGCA 62.642 66.667 12.47 0.00 0.00 5.69
212 214 2.745884 CGGCAGCCGTTGGATTCA 60.746 61.111 26.69 0.00 42.73 2.57
222 224 1.333308 CGTTGGATTCAGTGTGTGCAA 59.667 47.619 0.00 0.00 0.00 4.08
250 254 6.321435 CCCTAGGGATTGTTCTGTATTTTTCC 59.679 42.308 24.99 0.00 37.50 3.13
253 257 7.797121 AGGGATTGTTCTGTATTTTTCCATT 57.203 32.000 0.00 0.00 0.00 3.16
273 277 7.019388 TCCATTTTCTAGGGCTCTATCTACAT 58.981 38.462 0.00 0.00 0.00 2.29
301 305 2.551459 CAGGAGAACTGCTGTTTCTTGG 59.449 50.000 10.54 0.00 42.98 3.61
303 307 2.550180 GGAGAACTGCTGTTTCTTGGTC 59.450 50.000 10.54 0.00 36.39 4.02
325 329 9.052759 TGGTCTGTCTTTTAGTAACTTGATTTC 57.947 33.333 0.00 0.00 0.00 2.17
393 397 1.440938 CCAAACGGTGAAGACGCCAA 61.441 55.000 0.00 0.00 46.01 4.52
395 399 1.441732 AAACGGTGAAGACGCCAACC 61.442 55.000 0.00 0.00 46.01 3.77
419 423 5.583061 CGTGTGTTAACTAATAGGCCATTCA 59.417 40.000 5.01 0.00 0.00 2.57
446 450 2.513897 GCGCGAAGGGGTTAGCAT 60.514 61.111 12.10 0.00 42.39 3.79
614 794 4.219033 CGCAAATTATTAGCATCGTTCCC 58.781 43.478 0.00 0.00 0.00 3.97
764 2474 2.223340 GGTACGTACCAGGTGTATGTCG 60.223 54.545 34.65 0.38 44.60 4.35
795 2521 1.302832 CAGCACCCAGAAGACACCC 60.303 63.158 0.00 0.00 0.00 4.61
888 2619 5.131809 CCTTCCCTGAGATAAATTGTCTCCT 59.868 44.000 15.50 0.00 41.08 3.69
893 2624 6.047870 CCTGAGATAAATTGTCTCCTGTGAG 58.952 44.000 15.50 7.05 41.08 3.51
894 2625 5.982356 TGAGATAAATTGTCTCCTGTGAGG 58.018 41.667 15.50 0.00 41.08 3.86
895 2626 4.775236 AGATAAATTGTCTCCTGTGAGGC 58.225 43.478 0.00 0.00 43.79 4.70
896 2627 2.206576 AAATTGTCTCCTGTGAGGCC 57.793 50.000 0.00 0.00 42.81 5.19
897 2628 0.036010 AATTGTCTCCTGTGAGGCCG 60.036 55.000 0.00 0.00 42.81 6.13
898 2629 1.194781 ATTGTCTCCTGTGAGGCCGT 61.195 55.000 0.00 0.00 42.81 5.68
899 2630 2.099652 TTGTCTCCTGTGAGGCCGTG 62.100 60.000 0.00 0.00 42.81 4.94
900 2631 2.117423 TCTCCTGTGAGGCCGTGA 59.883 61.111 0.00 0.00 39.23 4.35
978 2731 1.765597 AAAGGAAACCGCGGAGGAGT 61.766 55.000 35.90 11.56 45.00 3.85
980 2733 2.125633 GAAACCGCGGAGGAGTCC 60.126 66.667 35.90 0.00 45.00 3.85
1017 2770 3.395702 ATGTTCCGGCGGGCTGTA 61.396 61.111 27.98 2.30 0.00 2.74
1092 2845 4.127040 CGCGCTCTCCACTGCTCT 62.127 66.667 5.56 0.00 0.00 4.09
1158 2911 2.679349 GCTCCTCCCTCATGTTTCTCAC 60.679 54.545 0.00 0.00 0.00 3.51
1287 3040 1.133945 TCAAGCAAGGCACAGGTGTTA 60.134 47.619 0.91 0.00 0.00 2.41
1352 3109 1.909302 CAGGAACCACCACCTCATACT 59.091 52.381 0.00 0.00 42.04 2.12
1567 3324 0.668706 CGAGGAGAGTGGTGTGCTTG 60.669 60.000 0.00 0.00 0.00 4.01
1568 3325 0.394565 GAGGAGAGTGGTGTGCTTGT 59.605 55.000 0.00 0.00 0.00 3.16
1587 3344 1.389106 GTACAGGTAAGCTGTTTCGCG 59.611 52.381 0.00 0.00 36.37 5.87
1608 3365 2.424246 GGACTTTACAGACGAGGAGAGG 59.576 54.545 0.00 0.00 0.00 3.69
1639 3408 0.807667 CGGAATTGAGAGGAGTGCCG 60.808 60.000 0.00 0.00 39.96 5.69
1677 3446 1.531365 CAAGTCTGCCTGGGCCAAA 60.531 57.895 8.04 0.00 41.09 3.28
1749 3679 3.484886 GCACTTTCTAGCTTGAATCGCAG 60.485 47.826 11.41 8.33 0.00 5.18
1760 3704 1.052287 GAATCGCAGCCGTTTTGTTG 58.948 50.000 0.00 0.00 35.54 3.33
1811 3763 9.555411 AGGTTTTTATTTATGGATTTACCCTGT 57.445 29.630 0.00 0.00 38.00 4.00
1819 3771 9.889128 ATTTATGGATTTACCCTGTTTTGAATG 57.111 29.630 0.00 0.00 38.00 2.67
1820 3772 5.736951 TGGATTTACCCTGTTTTGAATGG 57.263 39.130 0.00 0.00 38.00 3.16
1821 3773 4.530161 TGGATTTACCCTGTTTTGAATGGG 59.470 41.667 0.00 0.00 44.89 4.00
1822 3774 4.503910 GATTTACCCTGTTTTGAATGGGC 58.496 43.478 0.00 0.00 43.25 5.36
1823 3775 1.540267 TACCCTGTTTTGAATGGGCG 58.460 50.000 0.00 0.00 43.25 6.13
1824 3776 1.184970 ACCCTGTTTTGAATGGGCGG 61.185 55.000 0.00 0.00 43.25 6.13
1825 3777 0.897863 CCCTGTTTTGAATGGGCGGA 60.898 55.000 0.00 0.00 32.49 5.54
1826 3778 0.527565 CCTGTTTTGAATGGGCGGAG 59.472 55.000 0.00 0.00 0.00 4.63
1839 3791 4.540153 CGGAGCCAAGGGTACATG 57.460 61.111 0.92 0.00 0.00 3.21
1840 3792 1.819632 CGGAGCCAAGGGTACATGC 60.820 63.158 0.92 0.00 0.00 4.06
1841 3793 1.302949 GGAGCCAAGGGTACATGCA 59.697 57.895 0.00 0.00 0.00 3.96
1842 3794 0.323360 GGAGCCAAGGGTACATGCAA 60.323 55.000 0.00 0.00 0.00 4.08
1843 3795 0.811281 GAGCCAAGGGTACATGCAAC 59.189 55.000 0.00 0.00 0.00 4.17
1844 3796 0.960364 AGCCAAGGGTACATGCAACG 60.960 55.000 0.00 0.00 0.00 4.10
1845 3797 1.933115 GCCAAGGGTACATGCAACGG 61.933 60.000 0.00 0.00 0.00 4.44
1846 3798 0.608035 CCAAGGGTACATGCAACGGT 60.608 55.000 0.00 0.00 0.00 4.83
1847 3799 0.521291 CAAGGGTACATGCAACGGTG 59.479 55.000 0.00 0.00 0.00 4.94
1848 3800 0.608035 AAGGGTACATGCAACGGTGG 60.608 55.000 0.90 0.00 0.00 4.61
1849 3801 1.003112 GGGTACATGCAACGGTGGA 60.003 57.895 0.90 0.00 0.00 4.02
1850 3802 1.024579 GGGTACATGCAACGGTGGAG 61.025 60.000 0.90 0.00 0.00 3.86
1851 3803 1.644786 GGTACATGCAACGGTGGAGC 61.645 60.000 0.90 0.00 0.00 4.70
1852 3804 0.673644 GTACATGCAACGGTGGAGCT 60.674 55.000 0.90 0.00 0.00 4.09
1853 3805 0.036164 TACATGCAACGGTGGAGCTT 59.964 50.000 0.90 0.00 0.00 3.74
1854 3806 0.036164 ACATGCAACGGTGGAGCTTA 59.964 50.000 0.90 0.00 0.00 3.09
1855 3807 0.729116 CATGCAACGGTGGAGCTTAG 59.271 55.000 0.90 0.00 0.00 2.18
1856 3808 0.324943 ATGCAACGGTGGAGCTTAGT 59.675 50.000 0.90 0.00 0.00 2.24
1857 3809 0.107831 TGCAACGGTGGAGCTTAGTT 59.892 50.000 0.90 0.00 0.00 2.24
1858 3810 0.517316 GCAACGGTGGAGCTTAGTTG 59.483 55.000 0.90 12.92 43.37 3.16
1859 3811 1.156736 CAACGGTGGAGCTTAGTTGG 58.843 55.000 0.00 0.00 38.66 3.77
1860 3812 0.036306 AACGGTGGAGCTTAGTTGGG 59.964 55.000 0.00 0.00 0.00 4.12
1861 3813 1.078426 CGGTGGAGCTTAGTTGGGG 60.078 63.158 0.00 0.00 0.00 4.96
1862 3814 1.378646 GGTGGAGCTTAGTTGGGGC 60.379 63.158 0.00 0.00 0.00 5.80
1863 3815 1.378646 GTGGAGCTTAGTTGGGGCC 60.379 63.158 0.00 0.00 0.00 5.80
1864 3816 1.850289 TGGAGCTTAGTTGGGGCCA 60.850 57.895 4.39 0.00 0.00 5.36
1865 3817 1.077429 GGAGCTTAGTTGGGGCCAG 60.077 63.158 4.39 0.00 0.00 4.85
1866 3818 1.750780 GAGCTTAGTTGGGGCCAGC 60.751 63.158 4.39 4.20 0.00 4.85
1867 3819 2.035626 GCTTAGTTGGGGCCAGCA 59.964 61.111 4.39 0.00 0.00 4.41
1868 3820 2.048603 GCTTAGTTGGGGCCAGCAG 61.049 63.158 4.39 0.00 0.00 4.24
1869 3821 1.379044 CTTAGTTGGGGCCAGCAGG 60.379 63.158 4.39 0.00 38.23 4.85
1870 3822 2.142292 CTTAGTTGGGGCCAGCAGGT 62.142 60.000 4.39 0.00 37.19 4.00
1871 3823 1.725169 TTAGTTGGGGCCAGCAGGTT 61.725 55.000 4.39 0.00 37.19 3.50
1872 3824 2.137177 TAGTTGGGGCCAGCAGGTTC 62.137 60.000 4.39 0.00 37.19 3.62
1873 3825 4.299796 TTGGGGCCAGCAGGTTCC 62.300 66.667 4.39 0.00 37.19 3.62
1875 3827 4.066139 GGGGCCAGCAGGTTCCAT 62.066 66.667 4.39 0.00 37.19 3.41
1876 3828 2.757099 GGGCCAGCAGGTTCCATG 60.757 66.667 4.39 0.00 37.19 3.66
1877 3829 2.757099 GGCCAGCAGGTTCCATGG 60.757 66.667 4.97 4.97 37.19 3.66
1879 3831 2.757099 CCAGCAGGTTCCATGGCC 60.757 66.667 6.96 3.12 0.00 5.36
1880 3832 2.757099 CAGCAGGTTCCATGGCCC 60.757 66.667 6.96 9.62 0.00 5.80
1881 3833 4.066139 AGCAGGTTCCATGGCCCC 62.066 66.667 6.96 9.22 0.00 5.80
1883 3835 3.671410 CAGGTTCCATGGCCCCCA 61.671 66.667 6.96 0.00 38.19 4.96
1884 3836 2.868566 AGGTTCCATGGCCCCCAA 60.869 61.111 6.96 0.00 36.95 4.12
1885 3837 2.364186 GGTTCCATGGCCCCCAAG 60.364 66.667 6.96 0.00 36.95 3.61
1886 3838 3.076916 GTTCCATGGCCCCCAAGC 61.077 66.667 6.96 0.00 36.95 4.01
1894 3846 2.272471 GCCCCCAAGCCTCACTAC 59.728 66.667 0.00 0.00 0.00 2.73
1895 3847 2.602676 GCCCCCAAGCCTCACTACA 61.603 63.158 0.00 0.00 0.00 2.74
1896 3848 2.074967 CCCCCAAGCCTCACTACAA 58.925 57.895 0.00 0.00 0.00 2.41
1897 3849 0.404040 CCCCCAAGCCTCACTACAAA 59.596 55.000 0.00 0.00 0.00 2.83
1898 3850 1.203001 CCCCCAAGCCTCACTACAAAA 60.203 52.381 0.00 0.00 0.00 2.44
1899 3851 1.886542 CCCCAAGCCTCACTACAAAAC 59.113 52.381 0.00 0.00 0.00 2.43
1900 3852 1.886542 CCCAAGCCTCACTACAAAACC 59.113 52.381 0.00 0.00 0.00 3.27
1901 3853 2.489073 CCCAAGCCTCACTACAAAACCT 60.489 50.000 0.00 0.00 0.00 3.50
1902 3854 2.554032 CCAAGCCTCACTACAAAACCTG 59.446 50.000 0.00 0.00 0.00 4.00
1903 3855 3.476552 CAAGCCTCACTACAAAACCTGA 58.523 45.455 0.00 0.00 0.00 3.86
1904 3856 3.857157 AGCCTCACTACAAAACCTGAA 57.143 42.857 0.00 0.00 0.00 3.02
1905 3857 3.744660 AGCCTCACTACAAAACCTGAAG 58.255 45.455 0.00 0.00 0.00 3.02
1906 3858 3.391296 AGCCTCACTACAAAACCTGAAGA 59.609 43.478 0.00 0.00 0.00 2.87
1907 3859 4.134563 GCCTCACTACAAAACCTGAAGAA 58.865 43.478 0.00 0.00 0.00 2.52
1908 3860 4.578928 GCCTCACTACAAAACCTGAAGAAA 59.421 41.667 0.00 0.00 0.00 2.52
1909 3861 5.241728 GCCTCACTACAAAACCTGAAGAAAT 59.758 40.000 0.00 0.00 0.00 2.17
1910 3862 6.239036 GCCTCACTACAAAACCTGAAGAAATT 60.239 38.462 0.00 0.00 0.00 1.82
1911 3863 7.684428 GCCTCACTACAAAACCTGAAGAAATTT 60.684 37.037 0.00 0.00 0.00 1.82
1912 3864 8.197439 CCTCACTACAAAACCTGAAGAAATTTT 58.803 33.333 0.00 0.00 0.00 1.82
1913 3865 9.586435 CTCACTACAAAACCTGAAGAAATTTTT 57.414 29.630 0.00 0.00 0.00 1.94
1941 3893 8.478775 GGGGGCTGTTTATCTTATTAGATTTT 57.521 34.615 0.00 0.00 41.38 1.82
1942 3894 8.577296 GGGGGCTGTTTATCTTATTAGATTTTC 58.423 37.037 0.00 0.00 41.38 2.29
1943 3895 9.355916 GGGGCTGTTTATCTTATTAGATTTTCT 57.644 33.333 0.00 0.00 41.38 2.52
1969 3921 8.804688 TTTTAGATTTTGTACACCCAATTTCG 57.195 30.769 0.00 0.00 0.00 3.46
1970 3922 7.513371 TTAGATTTTGTACACCCAATTTCGT 57.487 32.000 0.00 0.00 0.00 3.85
1971 3923 8.618702 TTAGATTTTGTACACCCAATTTCGTA 57.381 30.769 0.00 0.00 0.00 3.43
1972 3924 7.513371 AGATTTTGTACACCCAATTTCGTAA 57.487 32.000 0.00 0.00 0.00 3.18
1973 3925 7.942990 AGATTTTGTACACCCAATTTCGTAAA 58.057 30.769 0.00 0.00 0.00 2.01
1974 3926 7.863877 AGATTTTGTACACCCAATTTCGTAAAC 59.136 33.333 0.00 0.00 0.00 2.01
1975 3927 5.435820 TTGTACACCCAATTTCGTAAACC 57.564 39.130 0.00 0.00 0.00 3.27
1976 3928 4.716794 TGTACACCCAATTTCGTAAACCT 58.283 39.130 0.00 0.00 0.00 3.50
1977 3929 5.862845 TGTACACCCAATTTCGTAAACCTA 58.137 37.500 0.00 0.00 0.00 3.08
1978 3930 5.933463 TGTACACCCAATTTCGTAAACCTAG 59.067 40.000 0.00 0.00 0.00 3.02
1979 3931 3.754850 ACACCCAATTTCGTAAACCTAGC 59.245 43.478 0.00 0.00 0.00 3.42
1980 3932 4.007659 CACCCAATTTCGTAAACCTAGCT 58.992 43.478 0.00 0.00 0.00 3.32
1981 3933 4.094442 CACCCAATTTCGTAAACCTAGCTC 59.906 45.833 0.00 0.00 0.00 4.09
1982 3934 3.626217 CCCAATTTCGTAAACCTAGCTCC 59.374 47.826 0.00 0.00 0.00 4.70
1983 3935 3.308866 CCAATTTCGTAAACCTAGCTCCG 59.691 47.826 0.00 0.00 0.00 4.63
1984 3936 2.000429 TTTCGTAAACCTAGCTCCGC 58.000 50.000 0.00 0.00 0.00 5.54
1985 3937 0.174162 TTCGTAAACCTAGCTCCGCC 59.826 55.000 0.00 0.00 0.00 6.13
1986 3938 0.966875 TCGTAAACCTAGCTCCGCCA 60.967 55.000 0.00 0.00 0.00 5.69
1987 3939 0.804933 CGTAAACCTAGCTCCGCCAC 60.805 60.000 0.00 0.00 0.00 5.01
1988 3940 0.535797 GTAAACCTAGCTCCGCCACT 59.464 55.000 0.00 0.00 0.00 4.00
1989 3941 0.535335 TAAACCTAGCTCCGCCACTG 59.465 55.000 0.00 0.00 0.00 3.66
2011 3963 3.747529 GCTGTTTTGGATGTCAAATTGGG 59.252 43.478 0.00 0.00 43.95 4.12
2021 3981 2.821378 TGTCAAATTGGGCTCATCACTG 59.179 45.455 0.00 0.00 0.00 3.66
2026 3986 3.498774 ATTGGGCTCATCACTGGATAC 57.501 47.619 0.00 0.00 30.87 2.24
2047 4007 2.059756 TTTGTTCCCTCCCTCCATCT 57.940 50.000 0.00 0.00 0.00 2.90
2073 4048 7.178628 TCTCTAGTACCACTAGCTTGAACATTT 59.821 37.037 1.04 0.00 45.93 2.32
2074 4049 7.321153 TCTAGTACCACTAGCTTGAACATTTC 58.679 38.462 1.04 0.00 45.93 2.17
2075 4050 6.115448 AGTACCACTAGCTTGAACATTTCT 57.885 37.500 1.04 0.00 0.00 2.52
2076 4051 6.534634 AGTACCACTAGCTTGAACATTTCTT 58.465 36.000 1.04 0.00 0.00 2.52
2077 4052 5.948992 ACCACTAGCTTGAACATTTCTTC 57.051 39.130 1.04 0.00 0.00 2.87
2078 4053 5.376625 ACCACTAGCTTGAACATTTCTTCA 58.623 37.500 1.04 0.00 0.00 3.02
2079 4054 6.006449 ACCACTAGCTTGAACATTTCTTCAT 58.994 36.000 1.04 0.00 30.19 2.57
2095 4070 1.702182 TCATGTGCCAAGCTTTCCAA 58.298 45.000 0.00 0.00 0.00 3.53
2210 4196 8.443953 AGTTTCCAGTAGATCTTATTCATTGC 57.556 34.615 0.00 0.00 0.00 3.56
2229 4215 4.955925 TGCCGATTAATTGACGAAACAT 57.044 36.364 4.10 0.00 0.00 2.71
2258 4244 5.914898 ACTAGGTTTGTAATTGCATTCCC 57.085 39.130 11.65 6.32 0.00 3.97
2287 4273 2.097466 GGCAGTAACAATTGCGCACTAT 59.903 45.455 11.12 0.00 41.17 2.12
2288 4274 3.427503 GGCAGTAACAATTGCGCACTATT 60.428 43.478 11.12 5.32 41.17 1.73
2338 4324 6.693113 GGTGTTCAGTTTGATCAAGAAAGTTC 59.307 38.462 8.41 0.00 29.01 3.01
2339 4325 7.250569 GTGTTCAGTTTGATCAAGAAAGTTCA 58.749 34.615 8.41 1.46 29.01 3.18
2348 4334 6.514947 TGATCAAGAAAGTTCATTTTGTGGG 58.485 36.000 0.00 0.00 0.00 4.61
2351 4337 4.058721 AGAAAGTTCATTTTGTGGGCAC 57.941 40.909 0.00 0.00 0.00 5.01
2406 4396 2.064762 CAGTCTGCTAACTGTGCACTC 58.935 52.381 19.41 0.00 41.43 3.51
2407 4397 1.001406 AGTCTGCTAACTGTGCACTCC 59.999 52.381 19.41 0.56 36.37 3.85
2419 4409 5.744171 ACTGTGCACTCCAATTATGTATGA 58.256 37.500 19.41 0.00 0.00 2.15
2420 4410 5.586243 ACTGTGCACTCCAATTATGTATGAC 59.414 40.000 19.41 0.00 0.00 3.06
2421 4411 4.570369 TGTGCACTCCAATTATGTATGACG 59.430 41.667 19.41 0.00 0.00 4.35
2422 4412 3.559655 TGCACTCCAATTATGTATGACGC 59.440 43.478 0.00 0.00 0.00 5.19
2427 4424 5.304614 ACTCCAATTATGTATGACGCTACCT 59.695 40.000 0.00 0.00 0.00 3.08
2510 4529 7.771927 AATGTTTGTTTCTCTGATGGAATCT 57.228 32.000 0.00 0.00 45.81 2.40
2511 4530 7.771927 ATGTTTGTTTCTCTGATGGAATCTT 57.228 32.000 0.00 0.00 45.81 2.40
2512 4531 7.206981 TGTTTGTTTCTCTGATGGAATCTTC 57.793 36.000 0.00 0.00 45.81 2.87
2533 4552 9.638176 ATCTTCATCTTGTTATTTCTATGGCTT 57.362 29.630 0.00 0.00 0.00 4.35
2538 4557 7.994425 TCTTGTTATTTCTATGGCTTGTTCA 57.006 32.000 0.00 0.00 0.00 3.18
2595 4616 9.783256 GTATTGTTGAGTTTCAAGTAACACTTT 57.217 29.630 0.00 0.00 36.03 2.66
2605 4626 9.744468 GTTTCAAGTAACACTTTATTCATTGGT 57.256 29.630 0.00 0.00 36.03 3.67
2622 4643 7.865875 TCATTGGTGATTAATTGACAAAACG 57.134 32.000 0.00 0.00 0.00 3.60
2625 4652 6.582677 TGGTGATTAATTGACAAAACGGAT 57.417 33.333 0.00 0.00 0.00 4.18
2659 4709 0.103208 GCATGCGCAGTAGTAGGAGT 59.897 55.000 18.32 0.00 38.36 3.85
2675 4725 5.889289 AGTAGGAGTACTCAATTCTGTCCTC 59.111 44.000 23.91 2.50 34.00 3.71
2699 4749 9.267096 CTCGCAATTAGAACAAGAATTAGAAAC 57.733 33.333 0.00 0.00 0.00 2.78
2715 4765 4.434713 AGAAACTTTGTTGTGTGGACAC 57.565 40.909 2.81 2.81 46.59 3.67
2757 4809 7.293073 AGAGTCATTTTATAGCCATCCATTGT 58.707 34.615 0.00 0.00 0.00 2.71
2771 4823 1.002134 ATTGTGCCTTCCAGTCCGG 60.002 57.895 0.00 0.00 0.00 5.14
2780 4832 2.224450 CCTTCCAGTCCGGTAACTTGTT 60.224 50.000 0.00 0.00 35.57 2.83
2855 4909 1.282248 CGACACGCCGACAACTCAAT 61.282 55.000 0.00 0.00 0.00 2.57
2860 4914 1.796796 GCCGACAACTCAATGCTCC 59.203 57.895 0.00 0.00 0.00 4.70
2875 4929 1.065491 TGCTCCGCATAGAATGGTGTT 60.065 47.619 0.00 0.00 31.71 3.32
2881 4935 2.223021 CGCATAGAATGGTGTTTGGTCG 60.223 50.000 0.00 0.00 0.00 4.79
2887 4941 5.880054 AGAATGGTGTTTGGTCGATAAAG 57.120 39.130 0.00 0.00 0.00 1.85
2890 4944 2.550606 TGGTGTTTGGTCGATAAAGCAC 59.449 45.455 16.50 16.50 0.00 4.40
2894 4948 2.735134 GTTTGGTCGATAAAGCACGAGT 59.265 45.455 0.00 0.00 39.16 4.18
2895 4949 1.990799 TGGTCGATAAAGCACGAGTG 58.009 50.000 0.00 0.00 39.16 3.51
2917 4971 4.758251 TGGTGCCACGCGAGGATG 62.758 66.667 27.39 7.16 0.00 3.51
2938 4992 3.329225 TGGTATCCACACCACTCATTTCA 59.671 43.478 0.00 0.00 43.76 2.69
2954 5008 6.149973 ACTCATTTCATCATGATTCGTGTTGT 59.850 34.615 5.16 0.00 32.59 3.32
2962 5016 9.108284 TCATCATGATTCGTGTTGTATTTACAT 57.892 29.630 5.16 0.00 35.89 2.29
2971 5025 7.148641 TCGTGTTGTATTTACATTGCCAAAAT 58.851 30.769 0.00 0.00 35.89 1.82
2973 5027 7.095857 CGTGTTGTATTTACATTGCCAAAATGT 60.096 33.333 8.60 8.60 42.82 2.71
2974 5028 9.197694 GTGTTGTATTTACATTGCCAAAATGTA 57.802 29.630 6.79 6.79 40.87 2.29
3014 5068 8.193953 TCAACAGATAATAGATGAGTATGGCA 57.806 34.615 0.00 0.00 0.00 4.92
3033 5087 2.216046 CACACAGATCTGCACAAGTGT 58.784 47.619 22.83 14.76 40.48 3.55
3042 5096 4.336889 TCTGCACAAGTGTAGCTAAAGT 57.663 40.909 12.61 0.00 42.03 2.66
3056 5110 3.266772 AGCTAAAGTCCCATTGATGACCA 59.733 43.478 0.00 0.00 31.76 4.02
3061 5115 2.086869 GTCCCATTGATGACCACACTG 58.913 52.381 0.00 0.00 0.00 3.66
3064 5118 3.779738 TCCCATTGATGACCACACTGATA 59.220 43.478 0.00 0.00 0.00 2.15
3080 5134 6.818142 CACACTGATACCACACTATTGATCAA 59.182 38.462 11.26 11.26 0.00 2.57
3081 5135 7.334171 CACACTGATACCACACTATTGATCAAA 59.666 37.037 13.09 1.39 0.00 2.69
3085 5139 7.629157 TGATACCACACTATTGATCAAAGGAA 58.371 34.615 13.09 0.00 0.00 3.36
3122 5178 2.405172 TGTTGCAGCGTACATTAACGA 58.595 42.857 0.00 0.00 45.68 3.85
3123 5179 2.156117 TGTTGCAGCGTACATTAACGAC 59.844 45.455 0.00 0.00 45.68 4.34
3125 5181 1.989864 TGCAGCGTACATTAACGACAG 59.010 47.619 0.00 0.00 45.68 3.51
3127 5183 1.007422 CAGCGTACATTAACGACAGCG 60.007 52.381 0.00 0.00 45.68 5.18
3137 5193 3.289629 CGACAGCGTGCACTATCG 58.710 61.111 16.19 13.89 0.00 2.92
3144 5200 2.510948 CGTGCACTATCGCATCTCC 58.489 57.895 16.19 0.00 45.26 3.71
3145 5201 0.031314 CGTGCACTATCGCATCTCCT 59.969 55.000 16.19 0.00 45.26 3.69
3146 5202 1.777101 GTGCACTATCGCATCTCCTC 58.223 55.000 10.32 0.00 45.26 3.71
3147 5203 1.067669 GTGCACTATCGCATCTCCTCA 59.932 52.381 10.32 0.00 45.26 3.86
3148 5204 1.966354 TGCACTATCGCATCTCCTCAT 59.034 47.619 0.00 0.00 36.86 2.90
3149 5205 2.029560 TGCACTATCGCATCTCCTCATC 60.030 50.000 0.00 0.00 36.86 2.92
3150 5206 2.230992 GCACTATCGCATCTCCTCATCT 59.769 50.000 0.00 0.00 0.00 2.90
3151 5207 3.835779 CACTATCGCATCTCCTCATCTG 58.164 50.000 0.00 0.00 0.00 2.90
3152 5208 3.255395 CACTATCGCATCTCCTCATCTGT 59.745 47.826 0.00 0.00 0.00 3.41
3156 5212 2.697229 TCGCATCTCCTCATCTGTCATT 59.303 45.455 0.00 0.00 0.00 2.57
3162 5218 6.349944 GCATCTCCTCATCTGTCATTGTTTTT 60.350 38.462 0.00 0.00 0.00 1.94
3205 5261 0.889306 AGACTAAGTCGTGAGGCCAC 59.111 55.000 5.01 0.00 37.67 5.01
3229 5285 2.435805 CTGCTAGGTGGAAGCTTGGATA 59.564 50.000 2.10 0.00 46.63 2.59
3272 5329 1.632948 GCGAGTTTACCCAGGTTCGC 61.633 60.000 15.49 15.49 41.25 4.70
3298 5355 0.110869 CCCCACGGTGGAGGTAAAAA 59.889 55.000 28.36 0.00 40.96 1.94
3303 5360 3.332034 CACGGTGGAGGTAAAAACCTAG 58.668 50.000 0.00 0.00 40.86 3.02
3324 5381 4.142790 AGATCCTGCTTGATTGCTATTGG 58.857 43.478 0.00 0.00 0.00 3.16
3327 5384 4.854173 TCCTGCTTGATTGCTATTGGTTA 58.146 39.130 0.00 0.00 0.00 2.85
3348 5405 2.531771 TGGTGGTCTCGATTACAAGGA 58.468 47.619 0.00 0.00 0.00 3.36
3370 5451 2.386249 GCTATTTCGCTACCTCTGTCG 58.614 52.381 0.00 0.00 0.00 4.35
3391 5472 4.937620 TCGCAAGAGCTATCAAAACATCTT 59.062 37.500 0.00 0.00 45.01 2.40
3417 5498 5.410924 TCGAGACCTATCAAAACATCTGTG 58.589 41.667 0.00 0.00 0.00 3.66
3454 5539 6.394345 AAAAACCTATCCTTCTGATGACCT 57.606 37.500 0.00 0.00 34.76 3.85
3464 5549 2.218673 TCTGATGACCTAGGGACTCCT 58.781 52.381 14.81 0.00 46.96 3.69
3514 5599 7.147532 GGGTTACAAGAGATTCTGGGTTATACT 60.148 40.741 0.00 0.00 0.00 2.12
3542 5627 3.522750 TCGGAGTCCTACTCTAAGTCCTT 59.477 47.826 7.77 0.00 44.46 3.36
3543 5628 3.878699 CGGAGTCCTACTCTAAGTCCTTC 59.121 52.174 7.77 0.00 44.46 3.46
3585 5680 2.235402 TCCGTCTTGTATTTGGACTCCC 59.765 50.000 0.00 0.00 0.00 4.30
3601 5700 2.500504 ACTCCCTAGTGGAATTTCGTCC 59.499 50.000 2.15 0.00 44.57 4.79
3645 5802 2.365617 CGGGTCATGATTGTAGTAGGCT 59.634 50.000 0.00 0.00 0.00 4.58
3657 5814 1.198713 AGTAGGCTGGGTCATGACTG 58.801 55.000 24.50 15.63 0.00 3.51
3660 5817 0.905357 AGGCTGGGTCATGACTGTAC 59.095 55.000 24.50 13.18 0.00 2.90
3662 5819 0.613260 GCTGGGTCATGACTGTACCA 59.387 55.000 24.50 20.51 34.83 3.25
3663 5820 1.003118 GCTGGGTCATGACTGTACCAA 59.997 52.381 24.50 1.51 34.83 3.67
3665 5822 1.003118 TGGGTCATGACTGTACCAAGC 59.997 52.381 24.50 5.20 34.83 4.01
3676 5846 1.278985 TGTACCAAGCTGGGTCATGAG 59.721 52.381 18.66 0.00 43.37 2.90
3683 5853 0.250234 GCTGGGTCATGAGTGTAGCA 59.750 55.000 13.34 0.00 0.00 3.49
3685 5855 1.552337 CTGGGTCATGAGTGTAGCAGT 59.448 52.381 0.00 0.00 0.00 4.40
3686 5856 1.550524 TGGGTCATGAGTGTAGCAGTC 59.449 52.381 0.00 0.00 34.67 3.51
3687 5857 1.134670 GGGTCATGAGTGTAGCAGTCC 60.135 57.143 0.00 0.00 33.27 3.85
3688 5858 1.469940 GGTCATGAGTGTAGCAGTCCG 60.470 57.143 0.00 0.00 33.27 4.79
3689 5859 1.472878 GTCATGAGTGTAGCAGTCCGA 59.527 52.381 0.00 0.00 33.27 4.55
3690 5860 1.745653 TCATGAGTGTAGCAGTCCGAG 59.254 52.381 0.00 0.00 33.27 4.63
3691 5861 1.474478 CATGAGTGTAGCAGTCCGAGT 59.526 52.381 0.00 0.00 33.27 4.18
3692 5862 1.166129 TGAGTGTAGCAGTCCGAGTC 58.834 55.000 2.03 0.00 33.27 3.36
3693 5863 1.166129 GAGTGTAGCAGTCCGAGTCA 58.834 55.000 0.00 0.00 0.00 3.41
3694 5864 1.746220 GAGTGTAGCAGTCCGAGTCAT 59.254 52.381 0.00 0.00 0.00 3.06
3695 5865 1.474478 AGTGTAGCAGTCCGAGTCATG 59.526 52.381 0.00 0.00 0.00 3.07
3696 5866 1.472878 GTGTAGCAGTCCGAGTCATGA 59.527 52.381 0.00 0.00 0.00 3.07
3697 5867 1.472878 TGTAGCAGTCCGAGTCATGAC 59.527 52.381 18.47 18.47 0.00 3.06
3698 5868 1.746220 GTAGCAGTCCGAGTCATGACT 59.254 52.381 28.23 28.23 45.84 3.41
3703 5873 1.746220 AGTCCGAGTCATGACTGTAGC 59.254 52.381 32.50 16.67 42.66 3.58
3704 5874 1.472878 GTCCGAGTCATGACTGTAGCA 59.527 52.381 32.50 7.57 42.66 3.49
3705 5875 1.745653 TCCGAGTCATGACTGTAGCAG 59.254 52.381 32.50 15.01 42.66 4.24
3706 5876 1.202348 CCGAGTCATGACTGTAGCAGG 60.202 57.143 32.50 19.32 42.66 4.85
3707 5877 1.800655 CGAGTCATGACTGTAGCAGGC 60.801 57.143 32.50 14.16 42.66 4.85
3708 5878 1.480137 GAGTCATGACTGTAGCAGGCT 59.520 52.381 32.50 4.76 40.76 4.58
3709 5879 1.206610 AGTCATGACTGTAGCAGGCTG 59.793 52.381 27.37 10.94 40.76 4.85
3710 5880 0.538584 TCATGACTGTAGCAGGCTGG 59.461 55.000 17.64 0.96 40.76 4.85
3711 5881 0.463295 CATGACTGTAGCAGGCTGGG 60.463 60.000 17.64 0.00 40.76 4.45
3712 5882 0.911525 ATGACTGTAGCAGGCTGGGT 60.912 55.000 17.64 5.29 40.76 4.51
3713 5883 1.219393 GACTGTAGCAGGCTGGGTC 59.781 63.158 17.64 0.00 36.41 4.46
3714 5884 1.536418 ACTGTAGCAGGCTGGGTCA 60.536 57.895 17.64 3.20 35.51 4.02
3715 5885 0.911525 ACTGTAGCAGGCTGGGTCAT 60.912 55.000 17.64 0.00 35.51 3.06
3716 5886 0.463295 CTGTAGCAGGCTGGGTCATG 60.463 60.000 17.64 0.00 0.00 3.07
3717 5887 0.909133 TGTAGCAGGCTGGGTCATGA 60.909 55.000 17.64 0.00 0.00 3.07
3718 5888 0.462759 GTAGCAGGCTGGGTCATGAC 60.463 60.000 17.91 17.91 0.00 3.06
3719 5889 0.618680 TAGCAGGCTGGGTCATGACT 60.619 55.000 24.50 4.45 0.00 3.41
3720 5890 1.748122 GCAGGCTGGGTCATGACTG 60.748 63.158 24.50 14.81 0.00 3.51
3721 5891 1.748122 CAGGCTGGGTCATGACTGC 60.748 63.158 24.50 22.84 0.00 4.40
3722 5892 2.226315 AGGCTGGGTCATGACTGCA 61.226 57.895 24.50 0.00 0.00 4.41
3723 5893 1.748122 GGCTGGGTCATGACTGCAG 60.748 63.158 24.50 13.48 0.00 4.41
3724 5894 1.002868 GCTGGGTCATGACTGCAGT 60.003 57.895 21.88 21.88 0.00 4.40
3725 5895 0.250234 GCTGGGTCATGACTGCAGTA 59.750 55.000 21.73 8.91 0.00 2.74
3726 5896 1.741732 GCTGGGTCATGACTGCAGTAG 60.742 57.143 21.73 11.99 0.00 2.57
3727 5897 0.904649 TGGGTCATGACTGCAGTAGG 59.095 55.000 21.73 12.33 0.00 3.18
3728 5898 0.462759 GGGTCATGACTGCAGTAGGC 60.463 60.000 21.73 14.16 45.13 3.93
3729 5899 0.462759 GGTCATGACTGCAGTAGGCC 60.463 60.000 21.73 19.38 43.89 5.19
3730 5900 0.807667 GTCATGACTGCAGTAGGCCG 60.808 60.000 21.73 7.11 43.89 6.13
3731 5901 1.522355 CATGACTGCAGTAGGCCGG 60.522 63.158 21.73 0.00 43.89 6.13
3732 5902 2.735772 ATGACTGCAGTAGGCCGGG 61.736 63.158 21.73 0.00 43.89 5.73
3733 5903 4.162690 GACTGCAGTAGGCCGGGG 62.163 72.222 21.73 0.00 43.89 5.73
3734 5904 4.715130 ACTGCAGTAGGCCGGGGA 62.715 66.667 20.16 0.00 43.89 4.81
3735 5905 4.162690 CTGCAGTAGGCCGGGGAC 62.163 72.222 5.25 0.00 43.89 4.46
3747 5917 3.006728 GGGGACCGGGTCATGTCA 61.007 66.667 27.32 0.00 40.86 3.58
3748 5918 2.375345 GGGGACCGGGTCATGTCAT 61.375 63.158 27.32 0.00 40.86 3.06
3749 5919 1.607612 GGGACCGGGTCATGTCATT 59.392 57.895 27.32 0.00 33.68 2.57
3750 5920 0.748005 GGGACCGGGTCATGTCATTG 60.748 60.000 27.32 0.00 33.68 2.82
3751 5921 0.748005 GGACCGGGTCATGTCATTGG 60.748 60.000 27.32 0.00 33.68 3.16
3752 5922 0.748005 GACCGGGTCATGTCATTGGG 60.748 60.000 22.10 0.00 32.09 4.12
3761 5931 1.066716 CATGTCATTGGGGCCAACTTG 60.067 52.381 4.39 0.00 38.88 3.16
3764 5934 0.541764 TCATTGGGGCCAACTTGTCC 60.542 55.000 4.39 0.00 38.88 4.02
3791 5961 2.168728 GACTTATCTCCAGGCCGACTTT 59.831 50.000 0.00 0.00 0.00 2.66
3798 5968 0.108138 CCAGGCCGACTTTACTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
3800 5970 1.275291 CAGGCCGACTTTACTCCAGAA 59.725 52.381 0.00 0.00 0.00 3.02
3802 5972 1.675116 GGCCGACTTTACTCCAGAACC 60.675 57.143 0.00 0.00 0.00 3.62
3803 5973 1.001633 GCCGACTTTACTCCAGAACCA 59.998 52.381 0.00 0.00 0.00 3.67
3804 5974 2.931320 GCCGACTTTACTCCAGAACCAG 60.931 54.545 0.00 0.00 0.00 4.00
3815 6019 2.708861 TCCAGAACCAGCTTAACTCCAA 59.291 45.455 0.00 0.00 0.00 3.53
3825 6029 5.106396 CCAGCTTAACTCCAAAGATGACTTG 60.106 44.000 2.86 0.00 41.69 3.16
3829 6033 6.205658 GCTTAACTCCAAAGATGACTTGACTT 59.794 38.462 0.00 0.00 36.39 3.01
3843 6047 9.160496 GATGACTTGACTTCAGAAATGACTTAT 57.840 33.333 0.00 0.00 0.00 1.73
3844 6048 8.539770 TGACTTGACTTCAGAAATGACTTATC 57.460 34.615 0.00 0.00 0.00 1.75
3845 6049 7.604164 TGACTTGACTTCAGAAATGACTTATCC 59.396 37.037 0.00 0.00 0.00 2.59
3846 6050 7.684529 ACTTGACTTCAGAAATGACTTATCCT 58.315 34.615 0.00 0.00 0.00 3.24
3847 6051 7.821846 ACTTGACTTCAGAAATGACTTATCCTC 59.178 37.037 0.00 0.00 0.00 3.71
3848 6052 7.244886 TGACTTCAGAAATGACTTATCCTCA 57.755 36.000 0.00 0.00 0.00 3.86
3849 6053 7.326454 TGACTTCAGAAATGACTTATCCTCAG 58.674 38.462 0.00 0.00 0.00 3.35
3850 6054 7.179160 TGACTTCAGAAATGACTTATCCTCAGA 59.821 37.037 0.00 0.00 0.00 3.27
3851 6055 7.555087 ACTTCAGAAATGACTTATCCTCAGAG 58.445 38.462 0.00 0.00 0.00 3.35
3852 6056 5.911752 TCAGAAATGACTTATCCTCAGAGC 58.088 41.667 0.00 0.00 0.00 4.09
3853 6057 5.660417 TCAGAAATGACTTATCCTCAGAGCT 59.340 40.000 0.00 0.00 0.00 4.09
3854 6058 5.754406 CAGAAATGACTTATCCTCAGAGCTG 59.246 44.000 0.00 0.00 0.00 4.24
3855 6059 4.686191 AATGACTTATCCTCAGAGCTGG 57.314 45.455 0.00 0.00 0.00 4.85
3856 6060 3.388552 TGACTTATCCTCAGAGCTGGA 57.611 47.619 0.00 0.00 36.72 3.86
3857 6061 3.921104 TGACTTATCCTCAGAGCTGGAT 58.079 45.455 8.28 8.28 44.42 3.41
3858 6062 3.894427 TGACTTATCCTCAGAGCTGGATC 59.106 47.826 6.58 0.00 41.67 3.36
3859 6063 4.151883 GACTTATCCTCAGAGCTGGATCT 58.848 47.826 6.58 0.00 41.67 2.75
3860 6064 5.163045 TGACTTATCCTCAGAGCTGGATCTA 60.163 44.000 6.58 0.00 41.67 1.98
3861 6065 5.324409 ACTTATCCTCAGAGCTGGATCTAG 58.676 45.833 6.58 0.86 41.67 2.43
3862 6066 1.993956 TCCTCAGAGCTGGATCTAGC 58.006 55.000 22.50 22.50 44.01 3.42
3863 6067 0.968405 CCTCAGAGCTGGATCTAGCC 59.032 60.000 25.70 17.29 44.76 3.93
3864 6068 1.702182 CTCAGAGCTGGATCTAGCCA 58.298 55.000 25.70 8.22 44.76 4.75
3865 6069 1.340889 CTCAGAGCTGGATCTAGCCAC 59.659 57.143 25.70 19.60 44.76 5.01
3866 6070 0.031857 CAGAGCTGGATCTAGCCACG 59.968 60.000 25.70 11.50 44.76 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.535687 ACCGTGCTACCTTGGACCT 60.536 57.895 0.00 0.00 0.00 3.85
38 39 1.630148 GATGTGGAACGTCGAGAAGG 58.370 55.000 0.00 0.00 43.85 3.46
97 98 4.159321 TCATTGCCAACAAGACTTTGTGAA 59.841 37.500 0.00 0.00 46.54 3.18
98 99 3.698539 TCATTGCCAACAAGACTTTGTGA 59.301 39.130 0.00 0.00 46.54 3.58
99 100 4.044336 TCATTGCCAACAAGACTTTGTG 57.956 40.909 0.00 0.00 46.54 3.33
100 101 5.034623 GCATCATTGCCAACAAGACTTTGT 61.035 41.667 0.00 0.00 45.03 2.83
116 118 3.383825 GCCAGATCCAAAGAAGCATCATT 59.616 43.478 0.00 0.00 0.00 2.57
123 125 3.012518 ACGATTGCCAGATCCAAAGAAG 58.987 45.455 0.00 0.00 0.00 2.85
140 142 3.997064 GACGCTGAGCCTGCACGAT 62.997 63.158 0.00 0.00 0.00 3.73
142 144 4.731612 AGACGCTGAGCCTGCACG 62.732 66.667 0.00 0.00 0.00 5.34
146 148 0.458197 CAGAAGAGACGCTGAGCCTG 60.458 60.000 0.00 0.00 34.06 4.85
165 167 0.577269 GTGTCACTGAGTCGCACAAC 59.423 55.000 10.09 0.00 0.00 3.32
177 179 1.451936 GCCCAACTCCAGTGTCACT 59.548 57.895 0.00 0.00 0.00 3.41
180 182 2.358737 CCGCCCAACTCCAGTGTC 60.359 66.667 0.00 0.00 0.00 3.67
199 201 0.108585 ACACACTGAATCCAACGGCT 59.891 50.000 0.00 0.00 0.00 5.52
202 204 0.943673 TGCACACACTGAATCCAACG 59.056 50.000 0.00 0.00 0.00 4.10
212 214 1.478654 CCCTAGGGTTTTGCACACACT 60.479 52.381 20.88 5.34 0.00 3.55
222 224 6.402981 AATACAGAACAATCCCTAGGGTTT 57.597 37.500 27.58 22.13 36.47 3.27
250 254 7.032580 CGATGTAGATAGAGCCCTAGAAAATG 58.967 42.308 0.00 0.00 0.00 2.32
253 257 5.632118 ACGATGTAGATAGAGCCCTAGAAA 58.368 41.667 0.00 0.00 0.00 2.52
273 277 2.158957 ACAGCAGTTCTCCTGAAAACGA 60.159 45.455 0.00 0.00 44.49 3.85
301 305 9.274206 AGGAAATCAAGTTACTAAAAGACAGAC 57.726 33.333 0.00 0.00 0.00 3.51
325 329 9.052759 AGAGCAACCACGTATTTTATTAATAGG 57.947 33.333 0.00 0.00 0.00 2.57
334 338 6.870971 TTTTCTAGAGCAACCACGTATTTT 57.129 33.333 0.00 0.00 0.00 1.82
359 363 2.501261 GTTTGGGTCGAGCTTAAGGTT 58.499 47.619 15.18 0.00 0.00 3.50
383 387 1.433837 AACACACGGTTGGCGTCTTC 61.434 55.000 0.00 0.00 38.60 2.87
393 397 3.261390 TGGCCTATTAGTTAACACACGGT 59.739 43.478 8.61 0.00 0.00 4.83
395 399 5.583061 TGAATGGCCTATTAGTTAACACACG 59.417 40.000 8.61 0.00 0.00 4.49
419 423 2.104331 CTTCGCGCCGACATACCT 59.896 61.111 0.00 0.00 34.89 3.08
446 450 5.817296 CCTAAGATCCAATGTGACATTTCGA 59.183 40.000 8.30 7.62 0.00 3.71
538 542 4.488879 GCCAGAAAACTATTTGGCTCTTG 58.511 43.478 7.08 0.00 35.66 3.02
614 794 9.079833 ACAAGAGATTCATTTGCAATTATTTCG 57.920 29.630 0.00 0.00 0.00 3.46
764 2474 1.278238 GGTGCTGCGTGTGTATACTC 58.722 55.000 4.17 0.83 0.00 2.59
795 2521 2.995466 TGTGTAAAGTACCGGACTCG 57.005 50.000 9.46 0.00 37.44 4.18
888 2619 2.662596 GATGGTCACGGCCTCACA 59.337 61.111 0.00 0.00 0.00 3.58
896 2627 4.794439 TCGCTGCCGATGGTCACG 62.794 66.667 0.00 0.00 38.82 4.35
897 2628 2.032634 TTTCGCTGCCGATGGTCAC 61.033 57.895 0.00 0.00 43.97 3.67
898 2629 2.032634 GTTTCGCTGCCGATGGTCA 61.033 57.895 0.00 0.00 43.97 4.02
899 2630 2.750888 GGTTTCGCTGCCGATGGTC 61.751 63.158 0.00 0.00 43.97 4.02
900 2631 2.746277 GGTTTCGCTGCCGATGGT 60.746 61.111 0.00 0.00 43.97 3.55
978 2731 1.444933 TTGCCTCTTCCTTCCTTGGA 58.555 50.000 0.00 0.00 0.00 3.53
980 2733 3.077484 TGATTGCCTCTTCCTTCCTTG 57.923 47.619 0.00 0.00 0.00 3.61
1078 2831 0.108709 CTCACAGAGCAGTGGAGAGC 60.109 60.000 4.48 0.00 39.93 4.09
1088 2841 0.955919 CGGGGGAAAACTCACAGAGC 60.956 60.000 0.00 0.00 32.04 4.09
1092 2845 1.104577 GCAACGGGGGAAAACTCACA 61.105 55.000 0.00 0.00 0.00 3.58
1158 2911 0.251209 TCCCTCTGTATCGATCGGGG 60.251 60.000 16.41 15.57 32.52 5.73
1197 2950 4.084380 GGCAAAAACATAAGCAGCAAGAAC 60.084 41.667 0.00 0.00 0.00 3.01
1287 3040 4.746466 AGGAGGAATCTACCTGATCGATT 58.254 43.478 0.00 0.00 40.73 3.34
1352 3109 3.898123 AGCTACAGAAGAAGACAGGACAA 59.102 43.478 0.00 0.00 0.00 3.18
1458 3215 4.580995 TCTTCCTCATCTCGGTATGTCTTC 59.419 45.833 0.00 0.00 0.00 2.87
1587 3344 2.424246 CCTCTCCTCGTCTGTAAAGTCC 59.576 54.545 0.00 0.00 0.00 3.85
1608 3365 0.373716 CAATTCCGTACAGCTTCCGC 59.626 55.000 0.00 0.00 0.00 5.54
1721 3651 7.068341 CGATTCAAGCTAGAAAGTGCATATTC 58.932 38.462 0.00 6.38 0.00 1.75
1722 3652 6.512415 GCGATTCAAGCTAGAAAGTGCATATT 60.512 38.462 0.00 0.00 0.00 1.28
1723 3653 5.049818 GCGATTCAAGCTAGAAAGTGCATAT 60.050 40.000 0.00 0.00 0.00 1.78
1724 3654 4.271049 GCGATTCAAGCTAGAAAGTGCATA 59.729 41.667 0.00 0.00 0.00 3.14
1733 3663 0.528466 CGGCTGCGATTCAAGCTAGA 60.528 55.000 0.00 0.00 35.28 2.43
1749 3679 1.003331 TGACATCGACAACAAAACGGC 60.003 47.619 0.00 0.00 0.00 5.68
1760 3704 2.420022 CCAGGTCCAATTTGACATCGAC 59.580 50.000 11.43 0.00 36.97 4.20
1793 3745 9.889128 CATTCAAAACAGGGTAAATCCATAAAT 57.111 29.630 0.00 0.00 38.11 1.40
1794 3746 8.317679 CCATTCAAAACAGGGTAAATCCATAAA 58.682 33.333 0.00 0.00 38.11 1.40
1795 3747 7.093112 CCCATTCAAAACAGGGTAAATCCATAA 60.093 37.037 0.00 0.00 36.52 1.90
1808 3760 0.109132 GCTCCGCCCATTCAAAACAG 60.109 55.000 0.00 0.00 0.00 3.16
1809 3761 1.531739 GGCTCCGCCCATTCAAAACA 61.532 55.000 0.00 0.00 44.06 2.83
1810 3762 1.215382 GGCTCCGCCCATTCAAAAC 59.785 57.895 0.00 0.00 44.06 2.43
1811 3763 3.693411 GGCTCCGCCCATTCAAAA 58.307 55.556 0.00 0.00 44.06 2.44
1821 3773 1.819632 CATGTACCCTTGGCTCCGC 60.820 63.158 0.00 0.00 0.00 5.54
1822 3774 1.819632 GCATGTACCCTTGGCTCCG 60.820 63.158 0.00 0.00 0.00 4.63
1823 3775 0.323360 TTGCATGTACCCTTGGCTCC 60.323 55.000 0.00 0.00 0.00 4.70
1824 3776 0.811281 GTTGCATGTACCCTTGGCTC 59.189 55.000 0.00 0.00 0.00 4.70
1825 3777 0.960364 CGTTGCATGTACCCTTGGCT 60.960 55.000 0.00 0.00 0.00 4.75
1826 3778 1.506262 CGTTGCATGTACCCTTGGC 59.494 57.895 0.00 0.00 0.00 4.52
1827 3779 0.608035 ACCGTTGCATGTACCCTTGG 60.608 55.000 0.00 0.00 0.00 3.61
1828 3780 0.521291 CACCGTTGCATGTACCCTTG 59.479 55.000 0.00 0.00 0.00 3.61
1829 3781 0.608035 CCACCGTTGCATGTACCCTT 60.608 55.000 0.00 0.00 0.00 3.95
1830 3782 1.002624 CCACCGTTGCATGTACCCT 60.003 57.895 0.00 0.00 0.00 4.34
1831 3783 1.003112 TCCACCGTTGCATGTACCC 60.003 57.895 0.00 0.00 0.00 3.69
1832 3784 1.644786 GCTCCACCGTTGCATGTACC 61.645 60.000 0.00 0.00 0.00 3.34
1833 3785 0.673644 AGCTCCACCGTTGCATGTAC 60.674 55.000 0.00 0.00 0.00 2.90
1834 3786 0.036164 AAGCTCCACCGTTGCATGTA 59.964 50.000 0.00 0.00 0.00 2.29
1835 3787 0.036164 TAAGCTCCACCGTTGCATGT 59.964 50.000 0.00 0.00 0.00 3.21
1836 3788 0.729116 CTAAGCTCCACCGTTGCATG 59.271 55.000 0.00 0.00 0.00 4.06
1837 3789 0.324943 ACTAAGCTCCACCGTTGCAT 59.675 50.000 0.00 0.00 0.00 3.96
1838 3790 0.107831 AACTAAGCTCCACCGTTGCA 59.892 50.000 0.00 0.00 0.00 4.08
1839 3791 0.517316 CAACTAAGCTCCACCGTTGC 59.483 55.000 0.00 0.00 0.00 4.17
1840 3792 1.156736 CCAACTAAGCTCCACCGTTG 58.843 55.000 0.00 0.00 35.85 4.10
1841 3793 0.036306 CCCAACTAAGCTCCACCGTT 59.964 55.000 0.00 0.00 0.00 4.44
1842 3794 1.677552 CCCAACTAAGCTCCACCGT 59.322 57.895 0.00 0.00 0.00 4.83
1843 3795 1.078426 CCCCAACTAAGCTCCACCG 60.078 63.158 0.00 0.00 0.00 4.94
1844 3796 1.378646 GCCCCAACTAAGCTCCACC 60.379 63.158 0.00 0.00 0.00 4.61
1845 3797 1.378646 GGCCCCAACTAAGCTCCAC 60.379 63.158 0.00 0.00 0.00 4.02
1846 3798 1.850289 TGGCCCCAACTAAGCTCCA 60.850 57.895 0.00 0.00 0.00 3.86
1847 3799 1.077429 CTGGCCCCAACTAAGCTCC 60.077 63.158 0.00 0.00 0.00 4.70
1848 3800 1.750780 GCTGGCCCCAACTAAGCTC 60.751 63.158 0.00 0.00 0.00 4.09
1849 3801 2.356667 GCTGGCCCCAACTAAGCT 59.643 61.111 0.00 0.00 0.00 3.74
1850 3802 2.035626 TGCTGGCCCCAACTAAGC 59.964 61.111 0.00 0.03 0.00 3.09
1851 3803 1.379044 CCTGCTGGCCCCAACTAAG 60.379 63.158 0.00 0.00 0.00 2.18
1852 3804 1.725169 AACCTGCTGGCCCCAACTAA 61.725 55.000 9.95 0.00 36.63 2.24
1853 3805 2.137177 GAACCTGCTGGCCCCAACTA 62.137 60.000 9.95 0.00 36.63 2.24
1854 3806 3.511610 AACCTGCTGGCCCCAACT 61.512 61.111 9.95 0.00 36.63 3.16
1855 3807 2.991540 GAACCTGCTGGCCCCAAC 60.992 66.667 9.95 0.00 36.63 3.77
1856 3808 4.299796 GGAACCTGCTGGCCCCAA 62.300 66.667 9.95 0.00 36.63 4.12
1858 3810 4.066139 ATGGAACCTGCTGGCCCC 62.066 66.667 9.95 11.32 36.63 5.80
1859 3811 2.757099 CATGGAACCTGCTGGCCC 60.757 66.667 9.95 11.68 36.63 5.80
1860 3812 2.757099 CCATGGAACCTGCTGGCC 60.757 66.667 5.56 0.00 36.63 5.36
1861 3813 3.455469 GCCATGGAACCTGCTGGC 61.455 66.667 18.40 13.49 46.54 4.85
1862 3814 2.757099 GGCCATGGAACCTGCTGG 60.757 66.667 18.40 8.29 39.83 4.85
1863 3815 2.757099 GGGCCATGGAACCTGCTG 60.757 66.667 18.40 0.00 0.00 4.41
1864 3816 4.066139 GGGGCCATGGAACCTGCT 62.066 66.667 18.40 0.00 0.00 4.24
1866 3818 3.236769 TTGGGGGCCATGGAACCTG 62.237 63.158 18.40 0.00 31.53 4.00
1867 3819 2.868566 TTGGGGGCCATGGAACCT 60.869 61.111 18.40 0.00 31.53 3.50
1868 3820 2.364186 CTTGGGGGCCATGGAACC 60.364 66.667 18.40 16.71 31.53 3.62
1869 3821 3.076916 GCTTGGGGGCCATGGAAC 61.077 66.667 18.40 7.18 31.53 3.62
1877 3829 2.137177 TTGTAGTGAGGCTTGGGGGC 62.137 60.000 0.00 0.00 41.20 5.80
1878 3830 0.404040 TTTGTAGTGAGGCTTGGGGG 59.596 55.000 0.00 0.00 0.00 5.40
1879 3831 1.886542 GTTTTGTAGTGAGGCTTGGGG 59.113 52.381 0.00 0.00 0.00 4.96
1880 3832 1.886542 GGTTTTGTAGTGAGGCTTGGG 59.113 52.381 0.00 0.00 0.00 4.12
1881 3833 2.554032 CAGGTTTTGTAGTGAGGCTTGG 59.446 50.000 0.00 0.00 0.00 3.61
1882 3834 3.476552 TCAGGTTTTGTAGTGAGGCTTG 58.523 45.455 0.00 0.00 0.00 4.01
1883 3835 3.857157 TCAGGTTTTGTAGTGAGGCTT 57.143 42.857 0.00 0.00 0.00 4.35
1884 3836 3.391296 TCTTCAGGTTTTGTAGTGAGGCT 59.609 43.478 0.00 0.00 0.00 4.58
1885 3837 3.740115 TCTTCAGGTTTTGTAGTGAGGC 58.260 45.455 0.00 0.00 0.00 4.70
1886 3838 6.884280 ATTTCTTCAGGTTTTGTAGTGAGG 57.116 37.500 0.00 0.00 0.00 3.86
1887 3839 9.586435 AAAAATTTCTTCAGGTTTTGTAGTGAG 57.414 29.630 0.00 0.00 0.00 3.51
1916 3868 8.478775 AAAATCTAATAAGATAAACAGCCCCC 57.521 34.615 0.00 0.00 41.81 5.40
1917 3869 9.355916 AGAAAATCTAATAAGATAAACAGCCCC 57.644 33.333 0.00 0.00 41.81 5.80
1943 3895 9.250624 CGAAATTGGGTGTACAAAATCTAAAAA 57.749 29.630 0.00 0.00 33.48 1.94
1944 3896 8.414778 ACGAAATTGGGTGTACAAAATCTAAAA 58.585 29.630 0.00 0.00 33.48 1.52
1945 3897 7.942990 ACGAAATTGGGTGTACAAAATCTAAA 58.057 30.769 0.00 0.00 33.48 1.85
1946 3898 7.513371 ACGAAATTGGGTGTACAAAATCTAA 57.487 32.000 0.00 0.00 33.48 2.10
1947 3899 8.618702 TTACGAAATTGGGTGTACAAAATCTA 57.381 30.769 0.00 0.00 33.48 1.98
1948 3900 7.513371 TTACGAAATTGGGTGTACAAAATCT 57.487 32.000 0.00 0.00 33.48 2.40
1949 3901 7.115236 GGTTTACGAAATTGGGTGTACAAAATC 59.885 37.037 0.00 0.00 33.48 2.17
1950 3902 6.924612 GGTTTACGAAATTGGGTGTACAAAAT 59.075 34.615 0.00 0.00 33.48 1.82
1951 3903 6.096564 AGGTTTACGAAATTGGGTGTACAAAA 59.903 34.615 0.00 0.00 33.48 2.44
1952 3904 5.593502 AGGTTTACGAAATTGGGTGTACAAA 59.406 36.000 0.00 0.00 33.48 2.83
1953 3905 5.131784 AGGTTTACGAAATTGGGTGTACAA 58.868 37.500 0.00 0.00 34.41 2.41
1954 3906 4.716794 AGGTTTACGAAATTGGGTGTACA 58.283 39.130 0.00 0.00 0.00 2.90
1955 3907 5.163824 GCTAGGTTTACGAAATTGGGTGTAC 60.164 44.000 0.00 0.00 0.00 2.90
1956 3908 4.937015 GCTAGGTTTACGAAATTGGGTGTA 59.063 41.667 0.00 0.00 0.00 2.90
1957 3909 3.754850 GCTAGGTTTACGAAATTGGGTGT 59.245 43.478 0.00 0.00 0.00 4.16
1958 3910 4.007659 AGCTAGGTTTACGAAATTGGGTG 58.992 43.478 0.00 0.00 0.00 4.61
1959 3911 4.259356 GAGCTAGGTTTACGAAATTGGGT 58.741 43.478 0.00 0.00 0.00 4.51
1960 3912 3.626217 GGAGCTAGGTTTACGAAATTGGG 59.374 47.826 0.00 0.00 0.00 4.12
1961 3913 3.308866 CGGAGCTAGGTTTACGAAATTGG 59.691 47.826 0.00 0.00 0.00 3.16
1962 3914 4.516092 CGGAGCTAGGTTTACGAAATTG 57.484 45.455 0.00 0.00 0.00 2.32
1983 3935 0.675633 ACATCCAAAACAGCAGTGGC 59.324 50.000 0.00 0.00 41.61 5.01
1984 3936 1.955778 TGACATCCAAAACAGCAGTGG 59.044 47.619 0.00 0.00 0.00 4.00
1985 3937 3.713858 TTGACATCCAAAACAGCAGTG 57.286 42.857 0.00 0.00 0.00 3.66
1986 3938 4.942761 ATTTGACATCCAAAACAGCAGT 57.057 36.364 0.00 0.00 46.64 4.40
1987 3939 4.449743 CCAATTTGACATCCAAAACAGCAG 59.550 41.667 0.00 0.00 46.64 4.24
1988 3940 4.378774 CCAATTTGACATCCAAAACAGCA 58.621 39.130 0.00 0.00 46.64 4.41
1989 3941 3.747529 CCCAATTTGACATCCAAAACAGC 59.252 43.478 0.00 0.00 46.64 4.40
2011 3963 5.163713 GGAACAAAAGTATCCAGTGATGAGC 60.164 44.000 0.00 0.00 33.30 4.26
2021 3981 3.371702 GGAGGGAGGGAACAAAAGTATCC 60.372 52.174 0.00 0.00 0.00 2.59
2026 3986 2.310052 AGATGGAGGGAGGGAACAAAAG 59.690 50.000 0.00 0.00 0.00 2.27
2073 4048 1.888512 GGAAAGCTTGGCACATGAAGA 59.111 47.619 0.00 0.00 39.30 2.87
2074 4049 1.614903 TGGAAAGCTTGGCACATGAAG 59.385 47.619 0.00 0.00 39.30 3.02
2075 4050 1.702182 TGGAAAGCTTGGCACATGAA 58.298 45.000 0.00 0.00 39.30 2.57
2076 4051 1.340889 GTTGGAAAGCTTGGCACATGA 59.659 47.619 0.00 0.00 39.30 3.07
2077 4052 1.787012 GTTGGAAAGCTTGGCACATG 58.213 50.000 0.00 0.00 39.30 3.21
2078 4053 0.314935 CGTTGGAAAGCTTGGCACAT 59.685 50.000 0.00 0.00 39.30 3.21
2079 4054 1.732917 CGTTGGAAAGCTTGGCACA 59.267 52.632 0.00 0.00 0.00 4.57
2122 4097 5.760253 ACCAGGCATAGAAATAACAAGATCG 59.240 40.000 0.00 0.00 0.00 3.69
2198 4184 7.225734 TCGTCAATTAATCGGCAATGAATAAGA 59.774 33.333 0.00 0.00 0.00 2.10
2199 4185 7.351981 TCGTCAATTAATCGGCAATGAATAAG 58.648 34.615 0.00 0.00 0.00 1.73
2210 4196 7.792925 TGCTATATGTTTCGTCAATTAATCGG 58.207 34.615 0.00 0.00 0.00 4.18
2229 4215 8.746052 ATGCAATTACAAACCTAGTTGCTATA 57.254 30.769 10.58 0.00 39.12 1.31
2258 4244 4.496341 CGCAATTGTTACTGCCTATTGAGG 60.496 45.833 7.40 0.00 46.93 3.86
2288 4274 1.988107 AGGAGAGATTTTGGTGCTCCA 59.012 47.619 2.64 2.64 45.87 3.86
2304 4290 2.348411 AACTGAACACCAACCAGGAG 57.652 50.000 0.00 0.00 41.22 3.69
2338 4324 2.906691 TTTGAGGTGCCCACAAAATG 57.093 45.000 12.14 0.00 40.12 2.32
2339 4325 6.865834 TTATATTTGAGGTGCCCACAAAAT 57.134 33.333 16.37 13.66 44.42 1.82
2348 4334 4.584325 TGCTCCCATTTATATTTGAGGTGC 59.416 41.667 0.00 0.00 34.02 5.01
2351 4337 6.012113 TGGATGCTCCCATTTATATTTGAGG 58.988 40.000 0.50 0.00 35.03 3.86
2352 4338 7.713734 ATGGATGCTCCCATTTATATTTGAG 57.286 36.000 4.86 0.00 44.11 3.02
2391 4381 2.566833 ATTGGAGTGCACAGTTAGCA 57.433 45.000 21.04 0.00 40.19 3.49
2406 4396 5.758296 ACAAGGTAGCGTCATACATAATTGG 59.242 40.000 0.00 0.00 0.00 3.16
2407 4397 6.073765 GGACAAGGTAGCGTCATACATAATTG 60.074 42.308 3.00 0.00 33.66 2.32
2419 4409 1.223187 CAAAACGGACAAGGTAGCGT 58.777 50.000 0.00 0.00 0.00 5.07
2420 4410 0.515564 CCAAAACGGACAAGGTAGCG 59.484 55.000 0.00 0.00 36.56 4.26
2421 4411 1.886886 TCCAAAACGGACAAGGTAGC 58.113 50.000 0.00 0.00 39.64 3.58
2447 4444 5.319043 ACCATAAAACTCAAAGGTCCAGA 57.681 39.130 0.00 0.00 0.00 3.86
2497 4516 8.905660 ATAACAAGATGAAGATTCCATCAGAG 57.094 34.615 0.00 0.00 42.03 3.35
2500 4519 9.690913 AGAAATAACAAGATGAAGATTCCATCA 57.309 29.630 0.00 0.30 42.03 3.07
2505 4524 9.890352 GCCATAGAAATAACAAGATGAAGATTC 57.110 33.333 0.00 0.00 0.00 2.52
2510 4529 8.579850 ACAAGCCATAGAAATAACAAGATGAA 57.420 30.769 0.00 0.00 0.00 2.57
2511 4530 8.579850 AACAAGCCATAGAAATAACAAGATGA 57.420 30.769 0.00 0.00 0.00 2.92
2512 4531 8.461222 TGAACAAGCCATAGAAATAACAAGATG 58.539 33.333 0.00 0.00 0.00 2.90
2533 4552 9.042450 TCCACTTACTTCTAATAAGGATGAACA 57.958 33.333 0.00 0.00 34.50 3.18
2538 4557 8.798975 TCCATCCACTTACTTCTAATAAGGAT 57.201 34.615 0.00 0.00 34.50 3.24
2598 4619 6.865726 CCGTTTTGTCAATTAATCACCAATGA 59.134 34.615 0.00 0.00 39.83 2.57
2605 4626 7.384439 TGCTATCCGTTTTGTCAATTAATCA 57.616 32.000 0.00 0.00 0.00 2.57
2622 4643 2.985896 TGCAGTTGGTAGTTGCTATCC 58.014 47.619 0.00 0.00 38.60 2.59
2625 4652 2.083774 GCATGCAGTTGGTAGTTGCTA 58.916 47.619 14.21 0.00 38.60 3.49
2659 4709 3.953712 TTGCGAGGACAGAATTGAGTA 57.046 42.857 0.00 0.00 0.00 2.59
2675 4725 9.612620 AAGTTTCTAATTCTTGTTCTAATTGCG 57.387 29.630 0.00 0.00 0.00 4.85
2732 4783 7.230108 CACAATGGATGGCTATAAAATGACTCT 59.770 37.037 0.00 0.00 0.00 3.24
2771 4823 8.865001 TGTTTTCATGTAAAAGCAACAAGTTAC 58.135 29.630 0.00 0.00 37.74 2.50
2780 4832 5.278463 GCTCTCCTGTTTTCATGTAAAAGCA 60.278 40.000 10.32 4.78 37.74 3.91
2860 4914 2.223021 CGACCAAACACCATTCTATGCG 60.223 50.000 0.00 0.00 0.00 4.73
2875 4929 2.333926 CACTCGTGCTTTATCGACCAA 58.666 47.619 0.00 0.00 32.65 3.67
2881 4935 2.609459 CCATGTCCACTCGTGCTTTATC 59.391 50.000 0.00 0.00 0.00 1.75
2887 4941 2.680913 GCACCATGTCCACTCGTGC 61.681 63.158 5.44 5.44 42.57 5.34
2890 4944 2.034879 GTGGCACCATGTCCACTCG 61.035 63.158 6.29 0.00 46.90 4.18
2917 4971 3.950397 TGAAATGAGTGGTGTGGATACC 58.050 45.455 0.00 0.00 41.24 2.73
2928 4982 6.115450 ACACGAATCATGATGAAATGAGTG 57.885 37.500 9.46 13.09 39.84 3.51
2938 4992 9.720667 CAATGTAAATACAACACGAATCATGAT 57.279 29.630 1.18 1.18 39.99 2.45
2991 5045 7.875041 GTGTGCCATACTCATCTATTATCTGTT 59.125 37.037 0.00 0.00 0.00 3.16
3014 5068 2.627515 ACACTTGTGCAGATCTGTGT 57.372 45.000 23.38 15.31 34.38 3.72
3033 5087 4.473196 TGGTCATCAATGGGACTTTAGCTA 59.527 41.667 0.00 0.00 34.49 3.32
3042 5096 1.984424 TCAGTGTGGTCATCAATGGGA 59.016 47.619 0.00 0.00 32.78 4.37
3056 5110 6.544928 TGATCAATAGTGTGGTATCAGTGT 57.455 37.500 0.00 0.00 0.00 3.55
3061 5115 8.682936 ATTCCTTTGATCAATAGTGTGGTATC 57.317 34.615 9.40 0.00 0.00 2.24
3064 5118 9.125026 GAATATTCCTTTGATCAATAGTGTGGT 57.875 33.333 9.40 0.00 0.00 4.16
3081 5135 8.897752 GCAACAAATAACTGAGAGAATATTCCT 58.102 33.333 11.92 8.74 0.00 3.36
3085 5139 7.466455 CGCTGCAACAAATAACTGAGAGAATAT 60.466 37.037 0.00 0.00 0.00 1.28
3094 5149 4.140518 TGTACGCTGCAACAAATAACTG 57.859 40.909 0.00 0.00 0.00 3.16
3103 5158 2.156117 TGTCGTTAATGTACGCTGCAAC 59.844 45.455 0.00 0.00 41.16 4.17
3133 5189 3.490348 TGACAGATGAGGAGATGCGATA 58.510 45.455 0.00 0.00 0.00 2.92
3137 5193 3.806380 ACAATGACAGATGAGGAGATGC 58.194 45.455 0.00 0.00 0.00 3.91
3162 5218 0.317160 ACGAAGACATCTGCCGTGAA 59.683 50.000 8.28 0.00 35.69 3.18
3177 5233 3.811497 TCACGACTTAGTCTTCTCACGAA 59.189 43.478 10.83 0.00 0.00 3.85
3186 5242 0.889306 GTGGCCTCACGACTTAGTCT 59.111 55.000 10.83 0.00 33.87 3.24
3229 5285 0.682852 TGTCGTTTCCGATCAACCCT 59.317 50.000 0.00 0.00 46.30 4.34
3247 5304 2.009774 CCTGGGTAAACTCGCATCTTG 58.990 52.381 0.00 0.00 0.00 3.02
3252 5309 0.320073 CGAACCTGGGTAAACTCGCA 60.320 55.000 0.00 0.00 0.00 5.10
3253 5310 1.632948 GCGAACCTGGGTAAACTCGC 61.633 60.000 16.93 16.93 41.25 5.03
3279 5336 0.110869 TTTTTACCTCCACCGTGGGG 59.889 55.000 17.76 14.49 37.90 4.96
3280 5337 1.241165 GTTTTTACCTCCACCGTGGG 58.759 55.000 17.76 8.23 38.32 4.61
3281 5338 1.202842 AGGTTTTTACCTCCACCGTGG 60.203 52.381 11.73 11.73 39.43 4.94
3298 5355 2.776536 AGCAATCAAGCAGGATCTAGGT 59.223 45.455 0.00 0.00 36.85 3.08
3303 5360 3.887716 ACCAATAGCAATCAAGCAGGATC 59.112 43.478 0.00 0.00 36.85 3.36
3324 5381 4.809426 CCTTGTAATCGAGACCACCATAAC 59.191 45.833 0.00 0.00 0.00 1.89
3327 5384 3.104512 TCCTTGTAATCGAGACCACCAT 58.895 45.455 0.00 0.00 0.00 3.55
3348 5405 1.749634 ACAGAGGTAGCGAAATAGCGT 59.250 47.619 0.00 0.00 43.00 5.07
3370 5451 6.850555 AGAAAGATGTTTTGATAGCTCTTGC 58.149 36.000 0.00 0.00 40.05 4.01
3376 5457 6.237969 GGTCTCGAGAAAGATGTTTTGATAGC 60.238 42.308 18.55 0.00 0.00 2.97
3391 5472 6.071334 ACAGATGTTTTGATAGGTCTCGAGAA 60.071 38.462 18.55 1.43 0.00 2.87
3417 5498 7.046652 GGATAGGTTTTTAGGTAGGTCTCAAC 58.953 42.308 0.00 0.00 0.00 3.18
3428 5513 6.768381 GGTCATCAGAAGGATAGGTTTTTAGG 59.232 42.308 0.00 0.00 33.95 2.69
3464 5549 7.037586 CCCCAGGGACTCAGCTATTATATAAAA 60.038 40.741 7.25 0.00 34.60 1.52
3514 5599 0.743701 GAGTAGGACTCCGACTGCGA 60.744 60.000 15.06 0.00 39.49 5.10
3585 5680 4.561606 CGTACTTGGACGAAATTCCACTAG 59.438 45.833 0.00 0.00 45.80 2.57
3601 5700 0.892755 TGCTACAGGACCCGTACTTG 59.107 55.000 0.00 0.00 0.00 3.16
3645 5802 1.003118 GCTTGGTACAGTCATGACCCA 59.997 52.381 22.21 18.31 42.39 4.51
3657 5814 1.279271 ACTCATGACCCAGCTTGGTAC 59.721 52.381 9.94 4.62 39.24 3.34
3660 5817 0.037303 ACACTCATGACCCAGCTTGG 59.963 55.000 1.37 1.37 37.25 3.61
3662 5819 1.065854 GCTACACTCATGACCCAGCTT 60.066 52.381 0.00 0.00 0.00 3.74
3663 5820 0.539051 GCTACACTCATGACCCAGCT 59.461 55.000 0.00 0.00 0.00 4.24
3665 5822 1.552337 ACTGCTACACTCATGACCCAG 59.448 52.381 0.00 0.00 0.00 4.45
3676 5846 1.472878 TCATGACTCGGACTGCTACAC 59.527 52.381 0.00 0.00 0.00 2.90
3683 5853 1.746220 GCTACAGTCATGACTCGGACT 59.254 52.381 25.58 8.30 44.84 3.85
3685 5855 1.745653 CTGCTACAGTCATGACTCGGA 59.254 52.381 25.58 16.03 40.20 4.55
3686 5856 1.202348 CCTGCTACAGTCATGACTCGG 60.202 57.143 25.58 17.44 40.20 4.63
3687 5857 1.800655 GCCTGCTACAGTCATGACTCG 60.801 57.143 25.58 21.10 40.20 4.18
3688 5858 1.480137 AGCCTGCTACAGTCATGACTC 59.520 52.381 25.58 14.64 40.20 3.36
3689 5859 1.206610 CAGCCTGCTACAGTCATGACT 59.793 52.381 22.89 22.89 43.61 3.41
3690 5860 1.649664 CAGCCTGCTACAGTCATGAC 58.350 55.000 18.47 18.47 0.00 3.06
3691 5861 0.538584 CCAGCCTGCTACAGTCATGA 59.461 55.000 0.00 0.00 0.00 3.07
3692 5862 0.463295 CCCAGCCTGCTACAGTCATG 60.463 60.000 0.00 0.00 0.00 3.07
3693 5863 0.911525 ACCCAGCCTGCTACAGTCAT 60.912 55.000 0.00 0.00 0.00 3.06
3694 5864 1.536418 ACCCAGCCTGCTACAGTCA 60.536 57.895 0.00 0.00 0.00 3.41
3695 5865 1.219393 GACCCAGCCTGCTACAGTC 59.781 63.158 0.00 0.00 0.00 3.51
3696 5866 0.911525 ATGACCCAGCCTGCTACAGT 60.912 55.000 0.00 0.00 0.00 3.55
3697 5867 0.463295 CATGACCCAGCCTGCTACAG 60.463 60.000 0.00 0.00 0.00 2.74
3698 5868 0.909133 TCATGACCCAGCCTGCTACA 60.909 55.000 0.00 0.00 0.00 2.74
3699 5869 0.462759 GTCATGACCCAGCCTGCTAC 60.463 60.000 15.31 0.00 0.00 3.58
3700 5870 0.618680 AGTCATGACCCAGCCTGCTA 60.619 55.000 22.21 0.00 0.00 3.49
3701 5871 1.922369 AGTCATGACCCAGCCTGCT 60.922 57.895 22.21 0.00 0.00 4.24
3702 5872 1.748122 CAGTCATGACCCAGCCTGC 60.748 63.158 22.21 0.00 0.00 4.85
3703 5873 1.748122 GCAGTCATGACCCAGCCTG 60.748 63.158 22.21 13.46 0.00 4.85
3704 5874 2.194388 CTGCAGTCATGACCCAGCCT 62.194 60.000 22.21 0.00 0.00 4.58
3705 5875 1.748122 CTGCAGTCATGACCCAGCC 60.748 63.158 22.21 6.99 0.00 4.85
3706 5876 0.250234 TACTGCAGTCATGACCCAGC 59.750 55.000 29.67 25.97 35.73 4.85
3707 5877 1.134580 CCTACTGCAGTCATGACCCAG 60.135 57.143 28.78 28.78 37.27 4.45
3708 5878 0.904649 CCTACTGCAGTCATGACCCA 59.095 55.000 25.56 17.54 0.00 4.51
3709 5879 0.462759 GCCTACTGCAGTCATGACCC 60.463 60.000 25.56 13.92 40.77 4.46
3710 5880 0.462759 GGCCTACTGCAGTCATGACC 60.463 60.000 25.56 14.98 43.89 4.02
3711 5881 0.807667 CGGCCTACTGCAGTCATGAC 60.808 60.000 25.56 18.47 43.89 3.06
3712 5882 1.517361 CGGCCTACTGCAGTCATGA 59.483 57.895 25.56 4.47 43.89 3.07
3713 5883 1.522355 CCGGCCTACTGCAGTCATG 60.522 63.158 25.56 13.97 43.89 3.07
3714 5884 2.735772 CCCGGCCTACTGCAGTCAT 61.736 63.158 25.56 0.54 43.89 3.06
3715 5885 3.390521 CCCGGCCTACTGCAGTCA 61.391 66.667 25.56 9.17 43.89 3.41
3716 5886 4.162690 CCCCGGCCTACTGCAGTC 62.163 72.222 25.56 9.29 43.89 3.51
3717 5887 4.715130 TCCCCGGCCTACTGCAGT 62.715 66.667 25.12 25.12 43.89 4.40
3718 5888 4.162690 GTCCCCGGCCTACTGCAG 62.163 72.222 13.48 13.48 43.89 4.41
3730 5900 1.921869 AATGACATGACCCGGTCCCC 61.922 60.000 15.24 2.37 33.09 4.81
3731 5901 0.748005 CAATGACATGACCCGGTCCC 60.748 60.000 15.24 2.71 33.09 4.46
3732 5902 0.748005 CCAATGACATGACCCGGTCC 60.748 60.000 15.24 0.00 33.09 4.46
3733 5903 0.748005 CCCAATGACATGACCCGGTC 60.748 60.000 10.96 10.96 34.63 4.79
3734 5904 1.302949 CCCAATGACATGACCCGGT 59.697 57.895 0.00 0.00 0.00 5.28
3735 5905 1.453745 CCCCAATGACATGACCCGG 60.454 63.158 0.00 0.00 0.00 5.73
3736 5906 2.120909 GCCCCAATGACATGACCCG 61.121 63.158 0.00 0.00 0.00 5.28
3737 5907 1.758122 GGCCCCAATGACATGACCC 60.758 63.158 0.00 0.00 0.00 4.46
3738 5908 0.614415 TTGGCCCCAATGACATGACC 60.614 55.000 0.00 0.00 0.00 4.02
3739 5909 0.532115 GTTGGCCCCAATGACATGAC 59.468 55.000 0.00 0.00 38.28 3.06
3740 5910 0.409092 AGTTGGCCCCAATGACATGA 59.591 50.000 0.00 0.00 38.28 3.07
3741 5911 1.066716 CAAGTTGGCCCCAATGACATG 60.067 52.381 0.00 0.00 38.28 3.21
3742 5912 1.269012 CAAGTTGGCCCCAATGACAT 58.731 50.000 0.00 0.00 38.28 3.06
3743 5913 0.105760 ACAAGTTGGCCCCAATGACA 60.106 50.000 7.96 0.00 38.28 3.58
3744 5914 0.603065 GACAAGTTGGCCCCAATGAC 59.397 55.000 7.96 0.00 38.28 3.06
3745 5915 0.541764 GGACAAGTTGGCCCCAATGA 60.542 55.000 17.88 0.00 40.64 2.57
3746 5916 1.974543 GGACAAGTTGGCCCCAATG 59.025 57.895 17.88 1.33 40.64 2.82
3747 5917 4.539235 GGACAAGTTGGCCCCAAT 57.461 55.556 17.88 0.00 40.64 3.16
3779 5949 0.108138 CTGGAGTAAAGTCGGCCTGG 60.108 60.000 0.00 0.00 0.00 4.45
3791 5961 3.514309 GGAGTTAAGCTGGTTCTGGAGTA 59.486 47.826 0.00 0.00 0.00 2.59
3798 5968 5.003804 TCATCTTTGGAGTTAAGCTGGTTC 58.996 41.667 0.00 0.00 0.00 3.62
3800 5970 4.042187 AGTCATCTTTGGAGTTAAGCTGGT 59.958 41.667 0.00 0.00 0.00 4.00
3802 5972 5.702670 TCAAGTCATCTTTGGAGTTAAGCTG 59.297 40.000 0.00 0.00 0.00 4.24
3803 5973 5.703130 GTCAAGTCATCTTTGGAGTTAAGCT 59.297 40.000 0.00 0.00 0.00 3.74
3804 5974 5.703130 AGTCAAGTCATCTTTGGAGTTAAGC 59.297 40.000 0.00 0.00 0.00 3.09
3815 6019 7.222872 AGTCATTTCTGAAGTCAAGTCATCTT 58.777 34.615 0.00 0.00 31.85 2.40
3825 6029 7.551585 TCTGAGGATAAGTCATTTCTGAAGTC 58.448 38.462 0.00 0.00 31.85 3.01
3829 6033 5.660417 AGCTCTGAGGATAAGTCATTTCTGA 59.340 40.000 6.83 0.00 0.00 3.27
3843 6047 1.480312 GGCTAGATCCAGCTCTGAGGA 60.480 57.143 12.98 0.00 41.50 3.71
3844 6048 0.968405 GGCTAGATCCAGCTCTGAGG 59.032 60.000 12.98 0.00 41.50 3.86
3845 6049 1.340889 GTGGCTAGATCCAGCTCTGAG 59.659 57.143 12.98 0.00 41.50 3.35
3846 6050 1.407936 GTGGCTAGATCCAGCTCTGA 58.592 55.000 12.98 0.00 41.50 3.27
3847 6051 0.031857 CGTGGCTAGATCCAGCTCTG 59.968 60.000 12.98 0.00 41.50 3.35
3848 6052 2.424474 CGTGGCTAGATCCAGCTCT 58.576 57.895 12.98 0.00 41.50 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.