Multiple sequence alignment - TraesCS7D01G198900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G198900 chr7D 100.000 6829 0 0 1 6829 155689822 155696650 0.000000e+00 12611.0
1 TraesCS7D01G198900 chr7D 83.384 1649 180 52 176 1798 155679072 155680652 0.000000e+00 1441.0
2 TraesCS7D01G198900 chr7D 87.892 702 77 6 2003 2701 155691594 155692290 0.000000e+00 819.0
3 TraesCS7D01G198900 chr7D 87.892 702 77 6 1773 2469 155691824 155692522 0.000000e+00 819.0
4 TraesCS7D01G198900 chr7D 85.433 508 59 7 640 1137 158710785 158710283 1.310000e-141 514.0
5 TraesCS7D01G198900 chr7D 84.567 473 62 7 2231 2701 155691594 155692057 6.240000e-125 459.0
6 TraesCS7D01G198900 chr7D 84.567 473 62 7 1773 2236 155692052 155692522 6.240000e-125 459.0
7 TraesCS7D01G198900 chr7A 97.042 6390 152 17 461 6829 157397974 157404347 0.000000e+00 10719.0
8 TraesCS7D01G198900 chr7A 82.617 1651 189 60 176 1798 157392529 157394109 0.000000e+00 1369.0
9 TraesCS7D01G198900 chr7A 87.749 702 78 6 1773 2469 157399518 157400216 0.000000e+00 813.0
10 TraesCS7D01G198900 chr7A 86.913 703 80 9 2003 2701 157399290 157399984 0.000000e+00 778.0
11 TraesCS7D01G198900 chr7A 93.502 277 17 1 176 452 157397535 157397810 1.770000e-110 411.0
12 TraesCS7D01G198900 chr7B 96.767 5290 114 20 673 5937 117621633 117626890 0.000000e+00 8769.0
13 TraesCS7D01G198900 chr7B 94.604 908 34 7 5930 6829 117627050 117627950 0.000000e+00 1391.0
14 TraesCS7D01G198900 chr7B 84.516 1156 127 28 645 1798 117614136 117615241 0.000000e+00 1096.0
15 TraesCS7D01G198900 chr7B 87.634 655 75 4 1820 2469 117623011 117623664 0.000000e+00 756.0
16 TraesCS7D01G198900 chr7B 84.979 719 83 9 2003 2701 117622719 117623432 0.000000e+00 706.0
17 TraesCS7D01G198900 chr7B 88.538 506 40 9 176 668 117618704 117619204 1.270000e-166 597.0
18 TraesCS7D01G198900 chr7B 83.932 473 65 7 1773 2236 117623194 117623664 6.290000e-120 442.0
19 TraesCS7D01G198900 chr3A 81.551 1805 224 62 3768 5487 52350159 52348379 0.000000e+00 1387.0
20 TraesCS7D01G198900 chr3A 79.492 590 81 21 1442 2008 52350976 52350404 3.860000e-102 383.0
21 TraesCS7D01G198900 chr3D 82.670 1356 163 38 3768 5068 40254436 40253098 0.000000e+00 1136.0
22 TraesCS7D01G198900 chr3D 81.534 639 87 15 5108 5731 40253029 40252407 1.320000e-136 497.0
23 TraesCS7D01G198900 chr3D 79.210 582 101 12 1437 2008 40255255 40254684 2.990000e-103 387.0
24 TraesCS7D01G198900 chr3B 85.759 962 126 9 3768 4726 63470979 63470026 0.000000e+00 1007.0
25 TraesCS7D01G198900 chr3B 80.763 577 79 19 1437 2008 63471772 63471223 8.190000e-114 422.0
26 TraesCS7D01G198900 chr3B 85.233 386 49 5 5108 5487 63469498 63469115 2.310000e-104 390.0
27 TraesCS7D01G198900 chr6B 79.015 467 75 16 1437 1885 68102925 68103386 1.440000e-76 298.0
28 TraesCS7D01G198900 chr2A 94.286 175 7 2 1 175 575060058 575059887 1.460000e-66 265.0
29 TraesCS7D01G198900 chrUn 91.257 183 16 0 2 184 503326 503144 4.090000e-62 250.0
30 TraesCS7D01G198900 chrUn 100.000 29 0 0 146 174 189521451 189521479 3.000000e-03 54.7
31 TraesCS7D01G198900 chr6D 92.453 53 4 0 3588 3640 442170383 442170435 7.340000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G198900 chr7D 155689822 155696650 6828 False 12611.000000 12611 100.000000 1 6829 1 chr7D.!!$F2 6828
1 TraesCS7D01G198900 chr7D 155679072 155680652 1580 False 1441.000000 1441 83.384000 176 1798 1 chr7D.!!$F1 1622
2 TraesCS7D01G198900 chr7D 155691594 155692522 928 False 639.000000 819 86.229500 1773 2701 4 chr7D.!!$F3 928
3 TraesCS7D01G198900 chr7D 158710283 158710785 502 True 514.000000 514 85.433000 640 1137 1 chr7D.!!$R1 497
4 TraesCS7D01G198900 chr7A 157392529 157404347 11818 False 4166.333333 10719 91.053667 176 6829 3 chr7A.!!$F1 6653
5 TraesCS7D01G198900 chr7A 157399290 157400216 926 False 795.500000 813 87.331000 1773 2701 2 chr7A.!!$F2 928
6 TraesCS7D01G198900 chr7B 117614136 117626890 12754 False 3487.333333 8769 89.940333 176 5937 3 chr7B.!!$F1 5761
7 TraesCS7D01G198900 chr7B 117622719 117627950 5231 False 823.750000 1391 87.787250 1773 6829 4 chr7B.!!$F2 5056
8 TraesCS7D01G198900 chr3A 52348379 52350976 2597 True 885.000000 1387 80.521500 1442 5487 2 chr3A.!!$R1 4045
9 TraesCS7D01G198900 chr3D 40252407 40255255 2848 True 673.333333 1136 81.138000 1437 5731 3 chr3D.!!$R1 4294
10 TraesCS7D01G198900 chr3B 63469115 63471772 2657 True 606.333333 1007 83.918333 1437 5487 3 chr3B.!!$R1 4050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 856 0.103208 CATCCGACACCAGCTACTCC 59.897 60.000 0.0 0.0 0.00 3.85 F
959 982 0.325671 TCCCGAGCTTCCTCCTCATT 60.326 55.000 0.0 0.0 34.49 2.57 F
2798 10556 0.177604 GAGAGCACTGATGTCCCAGG 59.822 60.000 0.0 0.0 38.44 4.45 F
3668 11444 3.435327 TGTTTGTGTGGAGCGTGAATATC 59.565 43.478 0.0 0.0 0.00 1.63 F
5142 13118 1.895231 TGCAAGGCACTGAGCTGTG 60.895 57.895 0.0 0.0 44.79 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2798 10556 2.802719 TGGGTAGCTCAATTTTGGTCC 58.197 47.619 0.00 0.0 0.00 4.46 R
3225 11001 1.474677 GCATGGCTGACTGCTCTACAT 60.475 52.381 4.20 0.0 42.39 2.29 R
4196 11983 5.784578 ACCCCTTGACTTAAACAATCAAC 57.215 39.130 0.00 0.0 0.00 3.18 R
5752 13740 1.001020 TGCCCAGCCAAGGTATGTG 60.001 57.895 0.00 0.0 0.00 3.21 R
6506 14662 1.139654 ACATGCATGCTACAGGACGAT 59.860 47.619 26.53 0.0 0.00 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.765795 ACATTGGTTTTTAAAAATGGATAACGA 57.234 25.926 16.02 0.00 34.92 3.85
35 36 7.876896 TGGTTTTTAAAAATGGATAACGAGC 57.123 32.000 16.02 1.13 0.00 5.03
36 37 7.662897 TGGTTTTTAAAAATGGATAACGAGCT 58.337 30.769 16.02 0.00 0.00 4.09
37 38 8.145122 TGGTTTTTAAAAATGGATAACGAGCTT 58.855 29.630 16.02 0.00 0.00 3.74
38 39 8.984764 GGTTTTTAAAAATGGATAACGAGCTTT 58.015 29.630 16.02 0.00 0.00 3.51
42 43 9.751542 TTTAAAAATGGATAACGAGCTTTTTGA 57.248 25.926 0.00 0.00 30.83 2.69
43 44 9.751542 TTAAAAATGGATAACGAGCTTTTTGAA 57.248 25.926 0.00 0.00 30.83 2.69
44 45 8.831715 AAAAATGGATAACGAGCTTTTTGAAT 57.168 26.923 0.00 0.00 0.00 2.57
45 46 8.831715 AAAATGGATAACGAGCTTTTTGAATT 57.168 26.923 0.00 0.00 0.00 2.17
46 47 7.816945 AATGGATAACGAGCTTTTTGAATTG 57.183 32.000 0.00 0.00 0.00 2.32
47 48 5.160641 TGGATAACGAGCTTTTTGAATTGC 58.839 37.500 0.00 0.00 0.00 3.56
48 49 5.048083 TGGATAACGAGCTTTTTGAATTGCT 60.048 36.000 0.00 0.00 38.59 3.91
49 50 5.513141 GGATAACGAGCTTTTTGAATTGCTC 59.487 40.000 0.00 0.00 45.79 4.26
50 51 4.574599 AACGAGCTTTTTGAATTGCTCT 57.425 36.364 11.23 0.00 46.70 4.09
51 52 5.689383 AACGAGCTTTTTGAATTGCTCTA 57.311 34.783 11.23 0.00 46.70 2.43
52 53 5.689383 ACGAGCTTTTTGAATTGCTCTAA 57.311 34.783 11.23 0.00 46.70 2.10
53 54 6.072112 ACGAGCTTTTTGAATTGCTCTAAA 57.928 33.333 11.23 0.00 46.70 1.85
54 55 6.681777 ACGAGCTTTTTGAATTGCTCTAAAT 58.318 32.000 11.23 0.00 46.70 1.40
55 56 6.803807 ACGAGCTTTTTGAATTGCTCTAAATC 59.196 34.615 11.23 0.00 46.70 2.17
56 57 6.252228 CGAGCTTTTTGAATTGCTCTAAATCC 59.748 38.462 11.23 0.00 46.70 3.01
57 58 6.996509 AGCTTTTTGAATTGCTCTAAATCCA 58.003 32.000 0.00 0.00 30.41 3.41
58 59 7.618137 AGCTTTTTGAATTGCTCTAAATCCAT 58.382 30.769 0.00 0.00 30.41 3.41
59 60 8.098912 AGCTTTTTGAATTGCTCTAAATCCATT 58.901 29.630 0.00 0.00 30.41 3.16
60 61 9.369904 GCTTTTTGAATTGCTCTAAATCCATTA 57.630 29.630 0.00 0.00 30.41 1.90
78 79 7.753309 TCCATTAATTAATATGTGAACCGGG 57.247 36.000 10.34 4.36 0.00 5.73
79 80 6.207810 TCCATTAATTAATATGTGAACCGGGC 59.792 38.462 10.34 0.00 0.00 6.13
80 81 6.015856 CCATTAATTAATATGTGAACCGGGCA 60.016 38.462 10.34 0.00 0.00 5.36
81 82 4.911514 AATTAATATGTGAACCGGGCAC 57.088 40.909 19.31 19.31 36.81 5.01
85 86 2.832498 TGTGAACCGGGCACATGA 59.168 55.556 23.38 6.29 41.00 3.07
86 87 1.149401 TGTGAACCGGGCACATGAA 59.851 52.632 23.38 5.98 41.00 2.57
87 88 0.251121 TGTGAACCGGGCACATGAAT 60.251 50.000 23.38 0.00 41.00 2.57
88 89 1.003696 TGTGAACCGGGCACATGAATA 59.996 47.619 23.38 5.04 41.00 1.75
89 90 2.088423 GTGAACCGGGCACATGAATAA 58.912 47.619 20.69 0.00 36.31 1.40
90 91 2.687935 GTGAACCGGGCACATGAATAAT 59.312 45.455 20.69 0.00 36.31 1.28
91 92 2.948979 TGAACCGGGCACATGAATAATC 59.051 45.455 6.32 0.00 0.00 1.75
92 93 2.727123 ACCGGGCACATGAATAATCA 57.273 45.000 6.32 0.00 40.57 2.57
108 109 8.745464 TGAATAATCATGTTGTGTGTTTCATG 57.255 30.769 0.00 0.00 38.96 3.07
109 110 7.813627 TGAATAATCATGTTGTGTGTTTCATGG 59.186 33.333 0.00 0.00 38.39 3.66
110 111 4.524316 ATCATGTTGTGTGTTTCATGGG 57.476 40.909 0.00 0.00 38.39 4.00
111 112 3.560105 TCATGTTGTGTGTTTCATGGGA 58.440 40.909 0.00 0.00 38.39 4.37
112 113 3.956848 TCATGTTGTGTGTTTCATGGGAA 59.043 39.130 0.00 0.00 38.39 3.97
113 114 4.588106 TCATGTTGTGTGTTTCATGGGAAT 59.412 37.500 0.00 0.00 38.39 3.01
114 115 5.772169 TCATGTTGTGTGTTTCATGGGAATA 59.228 36.000 0.00 0.00 38.39 1.75
115 116 5.446143 TGTTGTGTGTTTCATGGGAATAC 57.554 39.130 0.00 0.00 31.93 1.89
116 117 4.889995 TGTTGTGTGTTTCATGGGAATACA 59.110 37.500 7.76 7.76 31.93 2.29
117 118 5.538053 TGTTGTGTGTTTCATGGGAATACAT 59.462 36.000 12.67 0.00 34.84 2.29
118 119 6.717084 TGTTGTGTGTTTCATGGGAATACATA 59.283 34.615 12.67 9.08 34.84 2.29
119 120 7.395772 TGTTGTGTGTTTCATGGGAATACATAT 59.604 33.333 12.67 0.00 34.84 1.78
120 121 7.953005 TGTGTGTTTCATGGGAATACATATT 57.047 32.000 12.67 0.00 34.84 1.28
121 122 8.359875 TGTGTGTTTCATGGGAATACATATTT 57.640 30.769 12.67 0.00 34.84 1.40
122 123 9.467796 TGTGTGTTTCATGGGAATACATATTTA 57.532 29.630 12.67 0.93 34.84 1.40
131 132 9.958180 CATGGGAATACATATTTATCACTACCA 57.042 33.333 0.00 0.00 0.00 3.25
146 147 6.869206 TCACTACCATAAATATCCTAGCCC 57.131 41.667 0.00 0.00 0.00 5.19
147 148 5.421056 TCACTACCATAAATATCCTAGCCCG 59.579 44.000 0.00 0.00 0.00 6.13
148 149 5.187186 CACTACCATAAATATCCTAGCCCGT 59.813 44.000 0.00 0.00 0.00 5.28
149 150 4.553330 ACCATAAATATCCTAGCCCGTG 57.447 45.455 0.00 0.00 0.00 4.94
150 151 3.270877 CCATAAATATCCTAGCCCGTGC 58.729 50.000 0.00 0.00 37.95 5.34
151 152 2.736144 TAAATATCCTAGCCCGTGCG 57.264 50.000 0.00 0.00 44.33 5.34
152 153 1.045407 AAATATCCTAGCCCGTGCGA 58.955 50.000 0.00 0.00 44.33 5.10
153 154 1.045407 AATATCCTAGCCCGTGCGAA 58.955 50.000 0.00 0.00 44.33 4.70
154 155 1.267121 ATATCCTAGCCCGTGCGAAT 58.733 50.000 0.00 0.00 44.33 3.34
155 156 0.317160 TATCCTAGCCCGTGCGAATG 59.683 55.000 0.00 0.00 44.33 2.67
156 157 2.996168 ATCCTAGCCCGTGCGAATGC 62.996 60.000 0.00 0.00 44.33 3.56
167 168 4.499023 CGAATGCGCGGGTTGACG 62.499 66.667 8.83 0.00 0.00 4.35
168 169 3.115892 GAATGCGCGGGTTGACGA 61.116 61.111 8.83 0.00 35.47 4.20
169 170 3.362851 GAATGCGCGGGTTGACGAC 62.363 63.158 8.83 0.00 35.47 4.34
170 171 3.876589 AATGCGCGGGTTGACGACT 62.877 57.895 8.83 0.00 35.47 4.18
171 172 2.495366 AATGCGCGGGTTGACGACTA 62.495 55.000 8.83 0.00 35.47 2.59
172 173 2.879462 GCGCGGGTTGACGACTAG 60.879 66.667 8.83 0.00 35.47 2.57
173 174 2.564975 CGCGGGTTGACGACTAGT 59.435 61.111 0.00 0.00 35.47 2.57
174 175 1.796151 CGCGGGTTGACGACTAGTA 59.204 57.895 0.00 0.00 35.47 1.82
175 176 0.522076 CGCGGGTTGACGACTAGTAC 60.522 60.000 0.00 0.00 35.47 2.73
176 177 0.179153 GCGGGTTGACGACTAGTACC 60.179 60.000 0.00 0.00 35.47 3.34
177 178 0.453390 CGGGTTGACGACTAGTACCC 59.547 60.000 17.70 17.70 44.05 3.69
178 179 0.820226 GGGTTGACGACTAGTACCCC 59.180 60.000 17.08 7.23 42.13 4.95
179 180 1.618074 GGGTTGACGACTAGTACCCCT 60.618 57.143 17.08 0.00 42.13 4.79
180 181 2.357154 GGGTTGACGACTAGTACCCCTA 60.357 54.545 17.08 0.00 42.13 3.53
185 186 6.401394 GTTGACGACTAGTACCCCTAATTTT 58.599 40.000 0.00 0.00 0.00 1.82
195 196 5.550403 AGTACCCCTAATTTTCTTCTCACCA 59.450 40.000 0.00 0.00 0.00 4.17
215 216 1.202463 AGCACACATCCTCGCTATGAC 60.202 52.381 0.00 0.00 31.60 3.06
249 250 0.810648 CGGCTGCTTATGCTTTCCAA 59.189 50.000 0.00 0.00 40.48 3.53
257 258 6.683974 TGCTTATGCTTTCCAAATCTCTAC 57.316 37.500 1.96 0.00 40.48 2.59
284 285 1.043116 GCCCCCACAAATTAGCTCCC 61.043 60.000 0.00 0.00 0.00 4.30
286 287 1.686115 CCCCCACAAATTAGCTCCCTG 60.686 57.143 0.00 0.00 0.00 4.45
294 295 1.668826 ATTAGCTCCCTGGTCCACAA 58.331 50.000 0.00 0.00 0.00 3.33
295 296 1.440618 TTAGCTCCCTGGTCCACAAA 58.559 50.000 0.00 0.00 0.00 2.83
298 299 1.992557 AGCTCCCTGGTCCACAAATTA 59.007 47.619 0.00 0.00 0.00 1.40
300 301 2.369394 CTCCCTGGTCCACAAATTAGC 58.631 52.381 0.00 0.00 0.00 3.09
301 302 1.992557 TCCCTGGTCCACAAATTAGCT 59.007 47.619 0.00 0.00 0.00 3.32
302 303 2.026262 TCCCTGGTCCACAAATTAGCTC 60.026 50.000 0.00 0.00 0.00 4.09
303 304 2.290896 CCCTGGTCCACAAATTAGCTCA 60.291 50.000 0.00 0.00 0.00 4.26
304 305 3.420893 CCTGGTCCACAAATTAGCTCAA 58.579 45.455 0.00 0.00 0.00 3.02
305 306 3.826157 CCTGGTCCACAAATTAGCTCAAA 59.174 43.478 0.00 0.00 0.00 2.69
306 307 4.463891 CCTGGTCCACAAATTAGCTCAAAT 59.536 41.667 0.00 0.00 0.00 2.32
307 308 5.393461 CCTGGTCCACAAATTAGCTCAAATC 60.393 44.000 0.00 0.00 0.00 2.17
308 309 4.462483 TGGTCCACAAATTAGCTCAAATCC 59.538 41.667 0.00 0.00 0.00 3.01
309 310 4.706962 GGTCCACAAATTAGCTCAAATCCT 59.293 41.667 0.00 0.00 0.00 3.24
311 312 4.158394 TCCACAAATTAGCTCAAATCCTGC 59.842 41.667 0.00 0.00 0.00 4.85
314 323 2.717639 ATTAGCTCAAATCCTGCCGT 57.282 45.000 0.00 0.00 0.00 5.68
315 324 1.737838 TTAGCTCAAATCCTGCCGTG 58.262 50.000 0.00 0.00 0.00 4.94
320 329 1.667724 CTCAAATCCTGCCGTGTCATC 59.332 52.381 0.00 0.00 0.00 2.92
321 330 1.003003 TCAAATCCTGCCGTGTCATCA 59.997 47.619 0.00 0.00 0.00 3.07
326 335 1.278985 TCCTGCCGTGTCATCATTTCT 59.721 47.619 0.00 0.00 0.00 2.52
348 366 7.709269 TCTCGCCATGTTATAACAATACTTC 57.291 36.000 21.57 7.69 43.03 3.01
349 367 7.497595 TCTCGCCATGTTATAACAATACTTCT 58.502 34.615 21.57 1.17 43.03 2.85
368 386 0.915387 TGTATACCCCACCCACACCC 60.915 60.000 0.00 0.00 0.00 4.61
369 387 1.689932 TATACCCCACCCACACCCG 60.690 63.158 0.00 0.00 0.00 5.28
407 425 4.741239 ACACCGGATGCCCCCTCT 62.741 66.667 9.46 0.00 0.00 3.69
412 430 3.564218 GGATGCCCCCTCTGCGAT 61.564 66.667 0.00 0.00 0.00 4.58
420 438 2.362369 CCCTCTGCGATCCACCTGT 61.362 63.158 0.00 0.00 0.00 4.00
424 442 4.408821 TGCGATCCACCTGTGCCC 62.409 66.667 0.00 0.00 0.00 5.36
430 448 3.716195 CCACCTGTGCCCGATCCA 61.716 66.667 0.00 0.00 0.00 3.41
431 449 2.436646 CACCTGTGCCCGATCCAC 60.437 66.667 0.00 0.00 0.00 4.02
432 450 2.607750 ACCTGTGCCCGATCCACT 60.608 61.111 2.85 0.00 34.38 4.00
433 451 2.187946 CCTGTGCCCGATCCACTC 59.812 66.667 2.85 0.00 34.38 3.51
434 452 2.362369 CCTGTGCCCGATCCACTCT 61.362 63.158 2.85 0.00 34.38 3.24
435 453 1.153489 CTGTGCCCGATCCACTCTG 60.153 63.158 2.85 0.00 34.38 3.35
436 454 2.187946 GTGCCCGATCCACTCTGG 59.812 66.667 0.00 0.00 39.43 3.86
452 470 1.151699 TGGAATCCACCTCCCACCA 60.152 57.895 0.00 0.00 31.32 4.17
455 473 0.404040 GAATCCACCTCCCACCAACA 59.596 55.000 0.00 0.00 0.00 3.33
459 477 2.040544 CACCTCCCACCAACATCGC 61.041 63.158 0.00 0.00 0.00 4.58
482 500 2.044946 AGCGGCCCTTGAATGACC 60.045 61.111 0.00 0.00 0.00 4.02
502 520 1.680338 GCCTCATTAATCGGCCAGTT 58.320 50.000 2.24 0.00 37.86 3.16
503 521 1.334869 GCCTCATTAATCGGCCAGTTG 59.665 52.381 2.24 0.00 37.86 3.16
504 522 1.949525 CCTCATTAATCGGCCAGTTGG 59.050 52.381 2.24 0.00 38.53 3.77
519 537 0.804989 GTTGGTGAGGATTTCCAGCG 59.195 55.000 0.00 0.00 38.89 5.18
520 538 0.322456 TTGGTGAGGATTTCCAGCGG 60.322 55.000 0.00 0.00 38.89 5.52
525 543 2.872858 GTGAGGATTTCCAGCGGTAATC 59.127 50.000 14.21 14.21 38.30 1.75
527 545 3.136443 TGAGGATTTCCAGCGGTAATCAT 59.864 43.478 20.01 16.09 39.96 2.45
529 547 2.030805 GGATTTCCAGCGGTAATCATGC 60.031 50.000 20.01 7.22 39.96 4.06
554 572 5.704217 TTATTGCGACCAAAACAAAACAC 57.296 34.783 0.00 0.00 34.05 3.32
563 581 3.741344 CCAAAACAAAACACGTTGGTTGA 59.259 39.130 8.43 0.00 37.43 3.18
566 584 3.210358 ACAAAACACGTTGGTTGACTG 57.790 42.857 8.43 2.83 32.50 3.51
569 587 1.828979 AACACGTTGGTTGACTGGTT 58.171 45.000 0.00 0.00 0.00 3.67
570 588 1.375551 ACACGTTGGTTGACTGGTTC 58.624 50.000 0.00 0.00 0.00 3.62
572 590 2.168936 ACACGTTGGTTGACTGGTTCTA 59.831 45.455 0.00 0.00 0.00 2.10
575 593 3.057734 CGTTGGTTGACTGGTTCTACTC 58.942 50.000 0.00 0.00 31.26 2.59
577 595 4.022589 CGTTGGTTGACTGGTTCTACTCTA 60.023 45.833 0.00 0.00 31.26 2.43
578 596 5.336531 CGTTGGTTGACTGGTTCTACTCTAT 60.337 44.000 0.00 0.00 31.26 1.98
580 598 6.681729 TGGTTGACTGGTTCTACTCTATTT 57.318 37.500 0.00 0.00 31.26 1.40
581 599 7.074653 TGGTTGACTGGTTCTACTCTATTTT 57.925 36.000 0.00 0.00 31.26 1.82
582 600 7.159372 TGGTTGACTGGTTCTACTCTATTTTC 58.841 38.462 0.00 0.00 31.26 2.29
586 604 6.208007 TGACTGGTTCTACTCTATTTTCACGA 59.792 38.462 0.00 0.00 0.00 4.35
618 637 5.922053 TCACCTAAGTACTATGCGTCTAGA 58.078 41.667 0.00 0.00 0.00 2.43
623 642 7.117523 ACCTAAGTACTATGCGTCTAGATTACG 59.882 40.741 0.00 0.00 43.12 3.18
632 651 1.069091 GTCTAGATTACGCCGCTCCTC 60.069 57.143 0.00 0.00 0.00 3.71
633 652 0.952280 CTAGATTACGCCGCTCCTCA 59.048 55.000 0.00 0.00 0.00 3.86
637 656 2.364324 AGATTACGCCGCTCCTCATTAA 59.636 45.455 0.00 0.00 0.00 1.40
640 659 1.816074 ACGCCGCTCCTCATTAAAAA 58.184 45.000 0.00 0.00 0.00 1.94
657 676 3.646736 AAAACCCTATGCACCTAGACC 57.353 47.619 0.00 0.00 0.00 3.85
671 690 0.888619 TAGACCGAGGAAGCACAGTG 59.111 55.000 0.00 0.00 0.00 3.66
710 730 1.830847 GCCCACCAACCCGAAAAGT 60.831 57.895 0.00 0.00 0.00 2.66
722 742 1.063806 CGAAAAGTGAGGACGAGCTG 58.936 55.000 0.00 0.00 0.00 4.24
734 754 1.374947 CGAGCTGTGGGAGGGAAAA 59.625 57.895 0.00 0.00 0.00 2.29
738 758 1.177401 GCTGTGGGAGGGAAAACATC 58.823 55.000 0.00 0.00 0.00 3.06
768 790 3.462678 GGGAGGAGACGGGACAGC 61.463 72.222 0.00 0.00 0.00 4.40
781 803 3.296709 GACAGCGCCGAGAAGGGAA 62.297 63.158 2.29 0.00 41.48 3.97
782 804 2.047274 CAGCGCCGAGAAGGGAAA 60.047 61.111 2.29 0.00 41.48 3.13
783 805 1.671054 CAGCGCCGAGAAGGGAAAA 60.671 57.895 2.29 0.00 41.48 2.29
787 809 1.467543 GCGCCGAGAAGGGAAAATTTC 60.468 52.381 0.00 0.00 41.48 2.17
790 812 3.305064 CGCCGAGAAGGGAAAATTTCAAA 60.305 43.478 8.09 0.00 41.48 2.69
791 813 4.627058 GCCGAGAAGGGAAAATTTCAAAA 58.373 39.130 8.09 0.00 41.48 2.44
793 815 5.700832 GCCGAGAAGGGAAAATTTCAAAATT 59.299 36.000 8.09 0.00 39.26 1.82
794 816 6.204688 GCCGAGAAGGGAAAATTTCAAAATTT 59.795 34.615 8.09 7.47 43.82 1.82
796 818 7.095229 CCGAGAAGGGAAAATTTCAAAATTTCC 60.095 37.037 18.22 18.22 40.62 3.13
797 819 7.359181 CGAGAAGGGAAAATTTCAAAATTTCCG 60.359 37.037 19.29 6.89 45.16 4.30
806 828 3.051081 TCAAAATTTCCGGGGCAATTG 57.949 42.857 0.00 0.00 0.00 2.32
834 856 0.103208 CATCCGACACCAGCTACTCC 59.897 60.000 0.00 0.00 0.00 3.85
845 867 1.144276 GCTACTCCCGCCCTTCTTC 59.856 63.158 0.00 0.00 0.00 2.87
880 902 3.194542 CCATAATCCGAGATCTGACCCTC 59.805 52.174 0.00 0.32 0.00 4.30
882 904 0.856982 ATCCGAGATCTGACCCTCCT 59.143 55.000 0.00 0.00 0.00 3.69
883 905 0.631753 TCCGAGATCTGACCCTCCTT 59.368 55.000 0.00 0.00 0.00 3.36
884 906 1.036707 CCGAGATCTGACCCTCCTTC 58.963 60.000 0.00 0.00 0.00 3.46
885 907 1.036707 CGAGATCTGACCCTCCTTCC 58.963 60.000 0.00 0.00 0.00 3.46
886 908 1.036707 GAGATCTGACCCTCCTTCCG 58.963 60.000 0.00 0.00 0.00 4.30
887 909 1.045911 AGATCTGACCCTCCTTCCGC 61.046 60.000 0.00 0.00 0.00 5.54
920 943 3.006859 TCATCACATCAAACACCTCTCGT 59.993 43.478 0.00 0.00 0.00 4.18
931 954 2.517402 CTCTCGTCTCTCCCGGGG 60.517 72.222 23.50 12.05 0.00 5.73
932 955 4.816984 TCTCGTCTCTCCCGGGGC 62.817 72.222 23.50 5.26 0.00 5.80
949 972 3.322466 CACCCACCTCCCGAGCTT 61.322 66.667 0.00 0.00 0.00 3.74
953 976 2.726351 CCACCTCCCGAGCTTCCTC 61.726 68.421 0.00 0.00 34.66 3.71
954 977 2.364448 ACCTCCCGAGCTTCCTCC 60.364 66.667 0.00 0.00 34.49 4.30
957 980 1.380515 CTCCCGAGCTTCCTCCTCA 60.381 63.158 0.00 0.00 34.49 3.86
958 981 0.758685 CTCCCGAGCTTCCTCCTCAT 60.759 60.000 0.00 0.00 34.49 2.90
959 982 0.325671 TCCCGAGCTTCCTCCTCATT 60.326 55.000 0.00 0.00 34.49 2.57
960 983 0.543749 CCCGAGCTTCCTCCTCATTT 59.456 55.000 0.00 0.00 34.49 2.32
961 984 1.474143 CCCGAGCTTCCTCCTCATTTC 60.474 57.143 0.00 0.00 34.49 2.17
962 985 1.208052 CCGAGCTTCCTCCTCATTTCA 59.792 52.381 0.00 0.00 34.49 2.69
971 994 1.352352 CTCCTCATTTCACACCCCACT 59.648 52.381 0.00 0.00 0.00 4.00
977 1000 0.476771 TTTCACACCCCACTTCTCCC 59.523 55.000 0.00 0.00 0.00 4.30
984 1007 2.757077 CCACTTCTCCCGCCCTTT 59.243 61.111 0.00 0.00 0.00 3.11
1003 1026 4.193334 TCGAGCGCGTCTCCATGG 62.193 66.667 19.89 4.97 38.62 3.66
1042 1065 1.080434 GAGGAGAGTGTGGTCGTGC 60.080 63.158 0.00 0.00 0.00 5.34
1067 1090 4.704833 GACGGAGCAGGCCAAGCA 62.705 66.667 20.51 0.00 0.00 3.91
1194 1217 2.983879 CGCATCTCCCCCACCCTTT 61.984 63.158 0.00 0.00 0.00 3.11
1210 1238 1.001393 TTTTGGATCTGTCGGGGGC 60.001 57.895 0.00 0.00 0.00 5.80
1228 1256 1.657751 GCGGATTTGGCTGACCCTTC 61.658 60.000 0.00 0.00 33.59 3.46
1238 1266 1.268539 GCTGACCCTTCGTTGTTGTTG 60.269 52.381 0.00 0.00 0.00 3.33
1241 1269 2.820787 TGACCCTTCGTTGTTGTTGTTT 59.179 40.909 0.00 0.00 0.00 2.83
1242 1270 3.256136 TGACCCTTCGTTGTTGTTGTTTT 59.744 39.130 0.00 0.00 0.00 2.43
1243 1271 3.840468 ACCCTTCGTTGTTGTTGTTTTC 58.160 40.909 0.00 0.00 0.00 2.29
1244 1272 2.849473 CCCTTCGTTGTTGTTGTTTTCG 59.151 45.455 0.00 0.00 0.00 3.46
1245 1273 3.494232 CCTTCGTTGTTGTTGTTTTCGT 58.506 40.909 0.00 0.00 0.00 3.85
1246 1274 3.540738 CCTTCGTTGTTGTTGTTTTCGTC 59.459 43.478 0.00 0.00 0.00 4.20
1247 1275 3.808116 TCGTTGTTGTTGTTTTCGTCA 57.192 38.095 0.00 0.00 0.00 4.35
1248 1276 3.480894 TCGTTGTTGTTGTTTTCGTCAC 58.519 40.909 0.00 0.00 0.00 3.67
1249 1277 2.271687 CGTTGTTGTTGTTTTCGTCACG 59.728 45.455 0.00 0.00 0.00 4.35
1250 1278 1.884756 TGTTGTTGTTTTCGTCACGC 58.115 45.000 0.00 0.00 0.00 5.34
1251 1279 0.828959 GTTGTTGTTTTCGTCACGCG 59.171 50.000 3.53 3.53 43.01 6.01
1252 1280 0.858135 TTGTTGTTTTCGTCACGCGC 60.858 50.000 5.73 0.00 41.07 6.86
1253 1281 1.011574 GTTGTTTTCGTCACGCGCT 60.012 52.632 5.73 0.00 41.07 5.92
1254 1282 0.985416 GTTGTTTTCGTCACGCGCTC 60.985 55.000 5.73 0.00 41.07 5.03
1285 1313 2.300152 TCAGAAGACGATGGACTTTGCT 59.700 45.455 0.00 0.00 0.00 3.91
1359 1387 2.801063 CAAGTGCTTGTTCAACAGGTG 58.199 47.619 1.10 0.00 35.92 4.00
1386 1414 9.468532 AAAGAATTTCTTCATACAGTTTCAAGC 57.531 29.630 11.92 0.00 35.27 4.01
1387 1415 7.597386 AGAATTTCTTCATACAGTTTCAAGCC 58.403 34.615 0.00 0.00 33.56 4.35
1388 1416 6.899393 ATTTCTTCATACAGTTTCAAGCCA 57.101 33.333 0.00 0.00 0.00 4.75
1389 1417 5.689383 TTCTTCATACAGTTTCAAGCCAC 57.311 39.130 0.00 0.00 0.00 5.01
1390 1418 3.745975 TCTTCATACAGTTTCAAGCCACG 59.254 43.478 0.00 0.00 0.00 4.94
1399 1427 2.315925 TTCAAGCCACGATCATCTCC 57.684 50.000 0.00 0.00 0.00 3.71
1406 1434 4.616592 CGATCATCTCCGTGGTCG 57.383 61.111 0.00 0.00 45.03 4.79
1428 9148 2.484264 AGCAAACTAAACTGACCATCGC 59.516 45.455 0.00 0.00 0.00 4.58
1450 9170 1.452833 GCCCCTTGGTCTGATCTGC 60.453 63.158 0.00 0.00 0.00 4.26
2798 10556 0.177604 GAGAGCACTGATGTCCCAGG 59.822 60.000 0.00 0.00 38.44 4.45
3225 11001 9.952030 TGTTACATTATCCTATGTTTGTTCTGA 57.048 29.630 0.00 0.00 39.39 3.27
3668 11444 3.435327 TGTTTGTGTGGAGCGTGAATATC 59.565 43.478 0.00 0.00 0.00 1.63
3679 11455 7.225931 GTGGAGCGTGAATATCTGGTTAAATTA 59.774 37.037 0.00 0.00 0.00 1.40
3753 11529 4.067896 TCTTAGAGCAGCCTTTTGTCTTG 58.932 43.478 0.00 0.00 0.00 3.02
4854 12780 8.220755 AGATTTAGCTTGAGTTTGTGTACAAA 57.779 30.769 6.11 6.11 42.90 2.83
5141 13117 2.512397 TGCAAGGCACTGAGCTGT 59.488 55.556 0.00 0.00 44.79 4.40
5142 13118 1.895231 TGCAAGGCACTGAGCTGTG 60.895 57.895 0.00 0.00 44.79 3.66
5233 13214 4.476479 AGGAAAAAGCCTGTCAGGATAGAT 59.524 41.667 23.77 5.62 37.67 1.98
5752 13740 4.081077 CAGTTGAAGCGCAAAAACAAAAC 58.919 39.130 11.47 2.47 38.44 2.43
5898 13886 1.904287 TGCCACACTTCCATACAACC 58.096 50.000 0.00 0.00 0.00 3.77
5914 13902 3.131396 ACAACCGAGACTGAAATGTGTC 58.869 45.455 0.00 0.00 0.00 3.67
6113 14269 3.241701 CATGCATGGGTTTCGTTGTAAC 58.758 45.455 19.40 0.00 0.00 2.50
6465 14621 4.028131 ACATCCATTGCATTGGTCTGAAT 58.972 39.130 25.64 13.28 38.01 2.57
6484 14640 9.214953 GTCTGAATAATCATCGTTTGAATGTTC 57.785 33.333 7.93 7.93 38.03 3.18
6506 14662 9.952030 TGTTCTCACTATGGTTGTATAATCAAA 57.048 29.630 0.00 0.00 29.18 2.69
6651 14807 8.352201 GTGTATGTTATGCCACATATGTCAAAT 58.648 33.333 5.07 2.39 40.85 2.32
6660 14816 7.273712 TGCCACATATGTCAAATTTATGCATT 58.726 30.769 3.54 0.00 0.00 3.56
6762 14925 7.153985 TGACCATTTTGCTATTTTTCTTCCTG 58.846 34.615 0.00 0.00 0.00 3.86
6770 14933 6.977213 TGCTATTTTTCTTCCTGTACAAACC 58.023 36.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.765795 TCGTTATCCATTTTTAAAAACCAATGT 57.234 25.926 15.35 3.60 0.00 2.71
9 10 8.931775 GCTCGTTATCCATTTTTAAAAACCAAT 58.068 29.630 15.35 10.90 0.00 3.16
10 11 8.145122 AGCTCGTTATCCATTTTTAAAAACCAA 58.855 29.630 15.35 4.63 0.00 3.67
11 12 7.662897 AGCTCGTTATCCATTTTTAAAAACCA 58.337 30.769 15.35 3.39 0.00 3.67
12 13 8.528917 AAGCTCGTTATCCATTTTTAAAAACC 57.471 30.769 15.35 0.00 0.00 3.27
16 17 9.751542 TCAAAAAGCTCGTTATCCATTTTTAAA 57.248 25.926 0.00 0.00 30.90 1.52
17 18 9.751542 TTCAAAAAGCTCGTTATCCATTTTTAA 57.248 25.926 0.00 0.00 30.90 1.52
18 19 9.921637 ATTCAAAAAGCTCGTTATCCATTTTTA 57.078 25.926 0.00 0.00 30.90 1.52
19 20 8.831715 ATTCAAAAAGCTCGTTATCCATTTTT 57.168 26.923 0.00 0.00 31.87 1.94
20 21 8.711457 CAATTCAAAAAGCTCGTTATCCATTTT 58.289 29.630 0.00 0.00 0.00 1.82
21 22 7.148590 GCAATTCAAAAAGCTCGTTATCCATTT 60.149 33.333 0.00 0.00 0.00 2.32
22 23 6.311200 GCAATTCAAAAAGCTCGTTATCCATT 59.689 34.615 0.00 0.00 0.00 3.16
23 24 5.807011 GCAATTCAAAAAGCTCGTTATCCAT 59.193 36.000 0.00 0.00 0.00 3.41
24 25 5.048083 AGCAATTCAAAAAGCTCGTTATCCA 60.048 36.000 0.00 0.00 30.05 3.41
25 26 5.402398 AGCAATTCAAAAAGCTCGTTATCC 58.598 37.500 0.00 0.00 30.05 2.59
26 27 6.546056 GAGCAATTCAAAAAGCTCGTTATC 57.454 37.500 0.00 0.00 43.27 1.75
33 34 6.996509 TGGATTTAGAGCAATTCAAAAAGCT 58.003 32.000 0.00 0.00 40.60 3.74
34 35 7.838771 ATGGATTTAGAGCAATTCAAAAAGC 57.161 32.000 0.00 0.00 0.00 3.51
52 53 8.802267 CCCGGTTCACATATTAATTAATGGATT 58.198 33.333 18.98 0.00 0.00 3.01
53 54 7.093945 GCCCGGTTCACATATTAATTAATGGAT 60.094 37.037 18.98 4.57 0.00 3.41
54 55 6.207810 GCCCGGTTCACATATTAATTAATGGA 59.792 38.462 18.98 9.40 0.00 3.41
55 56 6.015856 TGCCCGGTTCACATATTAATTAATGG 60.016 38.462 18.98 13.50 0.00 3.16
56 57 6.861055 GTGCCCGGTTCACATATTAATTAATG 59.139 38.462 18.98 8.77 34.73 1.90
57 58 6.547880 TGTGCCCGGTTCACATATTAATTAAT 59.452 34.615 19.13 14.86 39.29 1.40
58 59 5.886474 TGTGCCCGGTTCACATATTAATTAA 59.114 36.000 19.13 0.00 39.29 1.40
59 60 5.437946 TGTGCCCGGTTCACATATTAATTA 58.562 37.500 19.13 0.00 39.29 1.40
60 61 4.274147 TGTGCCCGGTTCACATATTAATT 58.726 39.130 19.13 0.00 39.29 1.40
61 62 3.892284 TGTGCCCGGTTCACATATTAAT 58.108 40.909 19.13 0.00 39.29 1.40
62 63 3.351794 TGTGCCCGGTTCACATATTAA 57.648 42.857 19.13 0.36 39.29 1.40
64 65 3.968045 TGTGCCCGGTTCACATATT 57.032 47.368 19.13 0.00 39.29 1.28
68 69 0.251121 ATTCATGTGCCCGGTTCACA 60.251 50.000 23.39 23.39 46.86 3.58
69 70 1.745232 TATTCATGTGCCCGGTTCAC 58.255 50.000 14.96 14.96 35.14 3.18
70 71 2.498644 TTATTCATGTGCCCGGTTCA 57.501 45.000 0.00 0.00 0.00 3.18
71 72 2.948979 TGATTATTCATGTGCCCGGTTC 59.051 45.455 0.00 0.00 0.00 3.62
72 73 3.011566 TGATTATTCATGTGCCCGGTT 57.988 42.857 0.00 0.00 0.00 4.44
73 74 2.727123 TGATTATTCATGTGCCCGGT 57.273 45.000 0.00 0.00 0.00 5.28
82 83 9.361315 CATGAAACACACAACATGATTATTCAT 57.639 29.630 0.00 2.16 43.51 2.57
83 84 7.813627 CCATGAAACACACAACATGATTATTCA 59.186 33.333 0.00 0.00 41.45 2.57
84 85 7.276218 CCCATGAAACACACAACATGATTATTC 59.724 37.037 0.00 0.00 41.45 1.75
85 86 7.039152 TCCCATGAAACACACAACATGATTATT 60.039 33.333 0.00 0.00 41.45 1.40
86 87 6.436847 TCCCATGAAACACACAACATGATTAT 59.563 34.615 0.00 0.00 41.45 1.28
87 88 5.772169 TCCCATGAAACACACAACATGATTA 59.228 36.000 0.00 0.00 41.45 1.75
88 89 4.588106 TCCCATGAAACACACAACATGATT 59.412 37.500 0.00 0.00 41.45 2.57
89 90 4.151121 TCCCATGAAACACACAACATGAT 58.849 39.130 0.00 0.00 41.45 2.45
90 91 3.560105 TCCCATGAAACACACAACATGA 58.440 40.909 0.00 0.00 41.45 3.07
91 92 4.319139 TTCCCATGAAACACACAACATG 57.681 40.909 0.00 0.00 39.51 3.21
92 93 5.538053 TGTATTCCCATGAAACACACAACAT 59.462 36.000 0.00 0.00 33.32 2.71
93 94 4.889995 TGTATTCCCATGAAACACACAACA 59.110 37.500 0.00 0.00 33.32 3.33
94 95 5.446143 TGTATTCCCATGAAACACACAAC 57.554 39.130 0.00 0.00 33.32 3.32
95 96 7.953005 ATATGTATTCCCATGAAACACACAA 57.047 32.000 0.00 0.00 34.35 3.33
96 97 7.953005 AATATGTATTCCCATGAAACACACA 57.047 32.000 0.00 0.00 34.35 3.72
105 106 9.958180 TGGTAGTGATAAATATGTATTCCCATG 57.042 33.333 0.00 0.00 0.00 3.66
120 121 8.989131 GGGCTAGGATATTTATGGTAGTGATAA 58.011 37.037 0.00 0.00 0.00 1.75
121 122 7.287005 CGGGCTAGGATATTTATGGTAGTGATA 59.713 40.741 0.00 0.00 0.00 2.15
122 123 6.098409 CGGGCTAGGATATTTATGGTAGTGAT 59.902 42.308 0.00 0.00 0.00 3.06
123 124 5.421056 CGGGCTAGGATATTTATGGTAGTGA 59.579 44.000 0.00 0.00 0.00 3.41
124 125 5.187186 ACGGGCTAGGATATTTATGGTAGTG 59.813 44.000 0.00 0.00 0.00 2.74
125 126 5.187186 CACGGGCTAGGATATTTATGGTAGT 59.813 44.000 0.00 0.00 0.00 2.73
126 127 5.661458 CACGGGCTAGGATATTTATGGTAG 58.339 45.833 0.00 0.00 0.00 3.18
127 128 4.081309 GCACGGGCTAGGATATTTATGGTA 60.081 45.833 0.00 0.00 36.96 3.25
128 129 3.307480 GCACGGGCTAGGATATTTATGGT 60.307 47.826 0.00 0.00 36.96 3.55
129 130 3.270877 GCACGGGCTAGGATATTTATGG 58.729 50.000 0.00 0.00 36.96 2.74
130 131 2.930040 CGCACGGGCTAGGATATTTATG 59.070 50.000 8.62 0.00 38.10 1.90
131 132 2.829720 TCGCACGGGCTAGGATATTTAT 59.170 45.455 8.62 0.00 38.10 1.40
132 133 2.241160 TCGCACGGGCTAGGATATTTA 58.759 47.619 8.62 0.00 38.10 1.40
133 134 1.045407 TCGCACGGGCTAGGATATTT 58.955 50.000 8.62 0.00 38.10 1.40
134 135 1.045407 TTCGCACGGGCTAGGATATT 58.955 50.000 8.62 0.00 38.10 1.28
135 136 1.066858 CATTCGCACGGGCTAGGATAT 60.067 52.381 8.62 0.00 38.10 1.63
136 137 0.317160 CATTCGCACGGGCTAGGATA 59.683 55.000 8.62 0.00 38.10 2.59
137 138 1.069765 CATTCGCACGGGCTAGGAT 59.930 57.895 8.62 0.00 38.10 3.24
138 139 2.499205 CATTCGCACGGGCTAGGA 59.501 61.111 8.62 0.00 38.10 2.94
139 140 3.272334 GCATTCGCACGGGCTAGG 61.272 66.667 8.62 0.00 38.36 3.02
140 141 3.630148 CGCATTCGCACGGGCTAG 61.630 66.667 8.62 0.00 38.40 3.42
150 151 4.499023 CGTCAACCCGCGCATTCG 62.499 66.667 8.75 0.00 39.07 3.34
151 152 3.115892 TCGTCAACCCGCGCATTC 61.116 61.111 8.75 0.00 0.00 2.67
152 153 2.495366 TAGTCGTCAACCCGCGCATT 62.495 55.000 8.75 0.00 0.00 3.56
153 154 2.884087 CTAGTCGTCAACCCGCGCAT 62.884 60.000 8.75 0.00 0.00 4.73
154 155 3.620300 CTAGTCGTCAACCCGCGCA 62.620 63.158 8.75 0.00 0.00 6.09
155 156 2.257286 TACTAGTCGTCAACCCGCGC 62.257 60.000 0.00 0.00 0.00 6.86
156 157 0.522076 GTACTAGTCGTCAACCCGCG 60.522 60.000 0.00 0.00 0.00 6.46
157 158 0.179153 GGTACTAGTCGTCAACCCGC 60.179 60.000 0.00 0.00 0.00 6.13
158 159 0.453390 GGGTACTAGTCGTCAACCCG 59.547 60.000 13.81 0.00 40.42 5.28
160 161 1.844687 AGGGGTACTAGTCGTCAACC 58.155 55.000 0.00 0.03 0.00 3.77
161 162 5.588958 AATTAGGGGTACTAGTCGTCAAC 57.411 43.478 0.00 0.00 32.16 3.18
162 163 6.438425 AGAAAATTAGGGGTACTAGTCGTCAA 59.562 38.462 0.00 0.00 32.16 3.18
163 164 5.954150 AGAAAATTAGGGGTACTAGTCGTCA 59.046 40.000 0.00 0.00 32.16 4.35
164 165 6.462552 AGAAAATTAGGGGTACTAGTCGTC 57.537 41.667 0.00 0.00 32.16 4.20
165 166 6.666980 AGAAGAAAATTAGGGGTACTAGTCGT 59.333 38.462 0.00 0.00 32.16 4.34
166 167 7.110043 AGAAGAAAATTAGGGGTACTAGTCG 57.890 40.000 0.00 0.00 32.16 4.18
167 168 7.980662 GTGAGAAGAAAATTAGGGGTACTAGTC 59.019 40.741 0.00 0.00 32.16 2.59
168 169 7.092979 GGTGAGAAGAAAATTAGGGGTACTAGT 60.093 40.741 0.00 0.00 32.16 2.57
169 170 7.093024 TGGTGAGAAGAAAATTAGGGGTACTAG 60.093 40.741 0.00 0.00 32.16 2.57
170 171 6.731919 TGGTGAGAAGAAAATTAGGGGTACTA 59.268 38.462 0.00 0.00 0.00 1.82
171 172 5.550403 TGGTGAGAAGAAAATTAGGGGTACT 59.450 40.000 0.00 0.00 0.00 2.73
172 173 5.812286 TGGTGAGAAGAAAATTAGGGGTAC 58.188 41.667 0.00 0.00 0.00 3.34
173 174 5.572885 GCTGGTGAGAAGAAAATTAGGGGTA 60.573 44.000 0.00 0.00 0.00 3.69
174 175 4.811063 GCTGGTGAGAAGAAAATTAGGGGT 60.811 45.833 0.00 0.00 0.00 4.95
175 176 3.696548 GCTGGTGAGAAGAAAATTAGGGG 59.303 47.826 0.00 0.00 0.00 4.79
176 177 4.156739 GTGCTGGTGAGAAGAAAATTAGGG 59.843 45.833 0.00 0.00 0.00 3.53
177 178 4.761739 TGTGCTGGTGAGAAGAAAATTAGG 59.238 41.667 0.00 0.00 0.00 2.69
178 179 5.239306 TGTGTGCTGGTGAGAAGAAAATTAG 59.761 40.000 0.00 0.00 0.00 1.73
179 180 5.129634 TGTGTGCTGGTGAGAAGAAAATTA 58.870 37.500 0.00 0.00 0.00 1.40
180 181 3.953612 TGTGTGCTGGTGAGAAGAAAATT 59.046 39.130 0.00 0.00 0.00 1.82
185 186 1.002430 GGATGTGTGCTGGTGAGAAGA 59.998 52.381 0.00 0.00 0.00 2.87
195 196 1.114627 TCATAGCGAGGATGTGTGCT 58.885 50.000 0.00 0.00 41.32 4.40
215 216 0.037605 AGCCGAAAACTCGTAGGTGG 60.038 55.000 0.00 0.00 0.00 4.61
238 239 4.127171 GGCGTAGAGATTTGGAAAGCATA 58.873 43.478 0.00 0.00 0.00 3.14
249 250 1.041437 GGGCTAGTGGCGTAGAGATT 58.959 55.000 0.00 0.00 42.94 2.40
257 258 2.837031 ATTTGTGGGGGCTAGTGGCG 62.837 60.000 0.00 0.00 42.94 5.69
284 285 5.393461 GGATTTGAGCTAATTTGTGGACCAG 60.393 44.000 0.00 0.00 0.00 4.00
286 287 4.706962 AGGATTTGAGCTAATTTGTGGACC 59.293 41.667 0.00 0.00 0.00 4.46
294 295 2.684881 CACGGCAGGATTTGAGCTAATT 59.315 45.455 0.00 0.00 0.00 1.40
295 296 2.292267 CACGGCAGGATTTGAGCTAAT 58.708 47.619 0.00 0.00 0.00 1.73
298 299 0.674895 GACACGGCAGGATTTGAGCT 60.675 55.000 0.00 0.00 0.00 4.09
300 301 1.667724 GATGACACGGCAGGATTTGAG 59.332 52.381 0.00 0.00 0.00 3.02
301 302 1.003003 TGATGACACGGCAGGATTTGA 59.997 47.619 0.00 0.00 0.00 2.69
302 303 1.452110 TGATGACACGGCAGGATTTG 58.548 50.000 0.00 0.00 0.00 2.32
303 304 2.425143 ATGATGACACGGCAGGATTT 57.575 45.000 0.00 0.00 0.00 2.17
304 305 2.425143 AATGATGACACGGCAGGATT 57.575 45.000 0.00 0.00 0.00 3.01
305 306 2.092753 AGAAATGATGACACGGCAGGAT 60.093 45.455 0.00 0.00 0.00 3.24
306 307 1.278985 AGAAATGATGACACGGCAGGA 59.721 47.619 0.00 0.00 0.00 3.86
307 308 1.667724 GAGAAATGATGACACGGCAGG 59.332 52.381 0.00 0.00 0.00 4.85
308 309 1.325640 CGAGAAATGATGACACGGCAG 59.674 52.381 0.00 0.00 0.00 4.85
309 310 1.358877 CGAGAAATGATGACACGGCA 58.641 50.000 0.00 0.00 0.00 5.69
311 312 0.652592 GGCGAGAAATGATGACACGG 59.347 55.000 0.00 0.00 0.00 4.94
314 323 2.989909 ACATGGCGAGAAATGATGACA 58.010 42.857 0.00 0.00 0.00 3.58
315 324 5.679734 ATAACATGGCGAGAAATGATGAC 57.320 39.130 0.00 0.00 0.00 3.06
320 329 8.559536 AGTATTGTTATAACATGGCGAGAAATG 58.440 33.333 18.69 0.00 38.95 2.32
321 330 8.677148 AGTATTGTTATAACATGGCGAGAAAT 57.323 30.769 18.69 8.63 38.95 2.17
326 335 7.045416 ACAGAAGTATTGTTATAACATGGCGA 58.955 34.615 18.69 4.33 38.95 5.54
348 366 0.544697 GGTGTGGGTGGGGTATACAG 59.455 60.000 5.01 0.00 0.00 2.74
349 367 0.915387 GGGTGTGGGTGGGGTATACA 60.915 60.000 5.01 0.00 0.00 2.29
399 417 4.554036 GTGGATCGCAGAGGGGGC 62.554 72.222 0.00 0.00 43.63 5.80
407 425 4.408821 GGGCACAGGTGGATCGCA 62.409 66.667 1.10 0.00 0.00 5.10
412 430 3.399181 GGATCGGGCACAGGTGGA 61.399 66.667 1.10 0.00 0.00 4.02
420 438 2.038813 TCCAGAGTGGATCGGGCA 59.961 61.111 0.00 0.00 42.67 5.36
430 448 0.119155 TGGGAGGTGGATTCCAGAGT 59.881 55.000 5.39 0.00 36.40 3.24
431 449 0.543749 GTGGGAGGTGGATTCCAGAG 59.456 60.000 5.39 0.00 36.40 3.35
432 450 0.914417 GGTGGGAGGTGGATTCCAGA 60.914 60.000 5.39 0.00 36.40 3.86
433 451 1.207488 TGGTGGGAGGTGGATTCCAG 61.207 60.000 5.39 0.00 36.40 3.86
434 452 0.774096 TTGGTGGGAGGTGGATTCCA 60.774 55.000 0.00 0.00 36.40 3.53
435 453 0.323451 GTTGGTGGGAGGTGGATTCC 60.323 60.000 0.00 0.00 0.00 3.01
436 454 0.404040 TGTTGGTGGGAGGTGGATTC 59.596 55.000 0.00 0.00 0.00 2.52
437 455 1.005924 GATGTTGGTGGGAGGTGGATT 59.994 52.381 0.00 0.00 0.00 3.01
438 456 0.625849 GATGTTGGTGGGAGGTGGAT 59.374 55.000 0.00 0.00 0.00 3.41
439 457 1.836999 CGATGTTGGTGGGAGGTGGA 61.837 60.000 0.00 0.00 0.00 4.02
440 458 1.377202 CGATGTTGGTGGGAGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
441 459 2.040544 GCGATGTTGGTGGGAGGTG 61.041 63.158 0.00 0.00 0.00 4.00
442 460 2.351276 GCGATGTTGGTGGGAGGT 59.649 61.111 0.00 0.00 0.00 3.85
443 461 2.040544 GTGCGATGTTGGTGGGAGG 61.041 63.158 0.00 0.00 0.00 4.30
468 486 3.140814 GGCGGTCATTCAAGGGCC 61.141 66.667 0.00 0.00 0.00 5.80
502 520 1.299648 CCGCTGGAAATCCTCACCA 59.700 57.895 0.44 0.00 36.82 4.17
503 521 0.539986 TACCGCTGGAAATCCTCACC 59.460 55.000 0.44 0.00 36.82 4.02
504 522 2.396590 TTACCGCTGGAAATCCTCAC 57.603 50.000 0.44 0.00 36.82 3.51
529 547 6.626882 GTGTTTTGTTTTGGTCGCAATAATTG 59.373 34.615 0.00 0.00 0.00 2.32
554 572 3.057734 GAGTAGAACCAGTCAACCAACG 58.942 50.000 0.00 0.00 0.00 4.10
563 581 6.585695 TCGTGAAAATAGAGTAGAACCAGT 57.414 37.500 0.00 0.00 0.00 4.00
592 611 6.276832 AGACGCATAGTACTTAGGTGAAAA 57.723 37.500 0.00 0.00 0.00 2.29
594 613 6.351711 TCTAGACGCATAGTACTTAGGTGAA 58.648 40.000 0.00 0.00 0.00 3.18
597 616 7.117523 CGTAATCTAGACGCATAGTACTTAGGT 59.882 40.741 0.00 0.00 32.89 3.08
611 630 0.385723 GGAGCGGCGTAATCTAGACG 60.386 60.000 9.37 0.00 43.19 4.18
613 632 1.236628 GAGGAGCGGCGTAATCTAGA 58.763 55.000 9.37 0.00 0.00 2.43
618 637 2.902705 TTAATGAGGAGCGGCGTAAT 57.097 45.000 9.37 0.00 0.00 1.89
623 642 1.134367 GGGTTTTTAATGAGGAGCGGC 59.866 52.381 0.00 0.00 0.00 6.53
625 644 4.261197 GCATAGGGTTTTTAATGAGGAGCG 60.261 45.833 0.00 0.00 0.00 5.03
626 645 4.644685 TGCATAGGGTTTTTAATGAGGAGC 59.355 41.667 0.00 0.00 0.00 4.70
627 646 5.067805 GGTGCATAGGGTTTTTAATGAGGAG 59.932 44.000 0.00 0.00 0.00 3.69
632 651 6.039382 GGTCTAGGTGCATAGGGTTTTTAATG 59.961 42.308 0.00 0.00 0.00 1.90
633 652 6.127101 GGTCTAGGTGCATAGGGTTTTTAAT 58.873 40.000 0.00 0.00 0.00 1.40
637 656 2.093128 CGGTCTAGGTGCATAGGGTTTT 60.093 50.000 0.00 0.00 0.00 2.43
640 659 0.260816 TCGGTCTAGGTGCATAGGGT 59.739 55.000 0.00 0.00 0.00 4.34
690 710 4.958897 TTTCGGGTTGGTGGGCGG 62.959 66.667 0.00 0.00 0.00 6.13
691 711 2.907917 TTTTCGGGTTGGTGGGCG 60.908 61.111 0.00 0.00 0.00 6.13
710 730 1.979155 CTCCCACAGCTCGTCCTCA 60.979 63.158 0.00 0.00 0.00 3.86
722 742 1.739067 CTCGATGTTTTCCCTCCCAC 58.261 55.000 0.00 0.00 0.00 4.61
734 754 2.436646 CCCGCCTTTGCTCGATGT 60.437 61.111 0.00 0.00 34.43 3.06
768 790 1.810151 TGAAATTTTCCCTTCTCGGCG 59.190 47.619 0.00 0.00 0.00 6.46
782 804 3.778954 TGCCCCGGAAATTTTGAAATT 57.221 38.095 0.73 0.00 40.15 1.82
783 805 3.778954 TTGCCCCGGAAATTTTGAAAT 57.221 38.095 0.73 0.00 0.00 2.17
787 809 2.741517 GTCAATTGCCCCGGAAATTTTG 59.258 45.455 0.73 1.21 31.36 2.44
790 812 1.550072 CAGTCAATTGCCCCGGAAATT 59.450 47.619 0.73 3.25 33.87 1.82
791 813 1.185315 CAGTCAATTGCCCCGGAAAT 58.815 50.000 0.73 0.00 0.00 2.17
793 815 1.304052 CCAGTCAATTGCCCCGGAA 60.304 57.895 0.73 0.00 0.00 4.30
794 816 2.354729 CCAGTCAATTGCCCCGGA 59.645 61.111 0.73 0.00 0.00 5.14
796 818 3.814268 CGCCAGTCAATTGCCCCG 61.814 66.667 0.00 0.00 0.00 5.73
797 819 4.133796 GCGCCAGTCAATTGCCCC 62.134 66.667 0.00 0.00 0.00 5.80
806 828 4.451150 TGTCGGATGGCGCCAGTC 62.451 66.667 35.36 27.98 0.00 3.51
866 888 1.036707 GGAAGGAGGGTCAGATCTCG 58.963 60.000 0.00 0.00 0.00 4.04
867 889 1.036707 CGGAAGGAGGGTCAGATCTC 58.963 60.000 0.00 0.00 0.00 2.75
894 917 6.348786 CGAGAGGTGTTTGATGTGATGAATTT 60.349 38.462 0.00 0.00 0.00 1.82
932 955 3.316573 GAAGCTCGGGAGGTGGGTG 62.317 68.421 0.54 0.00 39.39 4.61
933 956 3.003763 GAAGCTCGGGAGGTGGGT 61.004 66.667 0.54 0.00 39.39 4.51
936 959 2.726351 GGAGGAAGCTCGGGAGGTG 61.726 68.421 0.54 0.00 39.39 4.00
938 961 2.042435 AGGAGGAAGCTCGGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
939 962 0.758685 ATGAGGAGGAAGCTCGGGAG 60.759 60.000 0.00 0.00 0.00 4.30
942 965 1.208052 TGAAATGAGGAGGAAGCTCGG 59.792 52.381 0.00 0.00 0.00 4.63
944 967 3.006247 GTGTGAAATGAGGAGGAAGCTC 58.994 50.000 0.00 0.00 0.00 4.09
945 968 2.290577 GGTGTGAAATGAGGAGGAAGCT 60.291 50.000 0.00 0.00 0.00 3.74
946 969 2.087646 GGTGTGAAATGAGGAGGAAGC 58.912 52.381 0.00 0.00 0.00 3.86
947 970 2.619074 GGGGTGTGAAATGAGGAGGAAG 60.619 54.545 0.00 0.00 0.00 3.46
949 972 0.991920 GGGGTGTGAAATGAGGAGGA 59.008 55.000 0.00 0.00 0.00 3.71
953 976 2.162681 GAAGTGGGGTGTGAAATGAGG 58.837 52.381 0.00 0.00 0.00 3.86
954 977 3.077359 GAGAAGTGGGGTGTGAAATGAG 58.923 50.000 0.00 0.00 0.00 2.90
957 980 1.075536 GGGAGAAGTGGGGTGTGAAAT 59.924 52.381 0.00 0.00 0.00 2.17
958 981 0.476771 GGGAGAAGTGGGGTGTGAAA 59.523 55.000 0.00 0.00 0.00 2.69
959 982 1.764571 CGGGAGAAGTGGGGTGTGAA 61.765 60.000 0.00 0.00 0.00 3.18
960 983 2.214216 CGGGAGAAGTGGGGTGTGA 61.214 63.158 0.00 0.00 0.00 3.58
961 984 2.347490 CGGGAGAAGTGGGGTGTG 59.653 66.667 0.00 0.00 0.00 3.82
962 985 3.637273 GCGGGAGAAGTGGGGTGT 61.637 66.667 0.00 0.00 0.00 4.16
971 994 1.605058 CTCGAGAAAGGGCGGGAGAA 61.605 60.000 6.58 0.00 0.00 2.87
984 1007 2.824489 ATGGAGACGCGCTCGAGA 60.824 61.111 18.75 9.86 44.91 4.04
1054 1077 3.756727 GCCTTGCTTGGCCTGCTC 61.757 66.667 19.10 1.14 46.82 4.26
1067 1090 4.048470 GCTTTCGGGGAGGGCCTT 62.048 66.667 7.89 0.00 0.00 4.35
1185 1208 1.839424 GACAGATCCAAAAGGGTGGG 58.161 55.000 0.00 0.00 39.34 4.61
1189 1212 0.394352 CCCCGACAGATCCAAAAGGG 60.394 60.000 4.43 4.43 37.20 3.95
1194 1217 3.781307 CGCCCCCGACAGATCCAA 61.781 66.667 0.00 0.00 36.29 3.53
1210 1238 1.369091 CGAAGGGTCAGCCAAATCCG 61.369 60.000 0.00 0.00 36.17 4.18
1219 1247 2.014128 ACAACAACAACGAAGGGTCAG 58.986 47.619 0.00 0.00 0.00 3.51
1228 1256 2.271687 CGTGACGAAAACAACAACAACG 59.728 45.455 0.00 0.00 0.00 4.10
1250 1278 3.168604 CTGACGACACTGCGAGCG 61.169 66.667 0.00 0.00 34.83 5.03
1251 1279 1.340657 CTTCTGACGACACTGCGAGC 61.341 60.000 0.00 0.00 34.83 5.03
1252 1280 0.238553 TCTTCTGACGACACTGCGAG 59.761 55.000 0.00 0.00 34.83 5.03
1253 1281 0.040336 GTCTTCTGACGACACTGCGA 60.040 55.000 9.18 0.00 33.15 5.10
1254 1282 2.425278 GTCTTCTGACGACACTGCG 58.575 57.895 9.18 0.00 33.15 5.18
1273 1301 1.068055 CAAGCCACAGCAAAGTCCATC 60.068 52.381 0.00 0.00 43.56 3.51
1275 1303 1.737355 GCAAGCCACAGCAAAGTCCA 61.737 55.000 0.00 0.00 43.56 4.02
1303 1331 2.245438 GACAGAGCCCCTTCTTCCGG 62.245 65.000 0.00 0.00 0.00 5.14
1318 1346 1.271543 TGGCAGAAGTGGATTGGACAG 60.272 52.381 0.00 0.00 0.00 3.51
1350 1378 7.587037 ATGAAGAAATTCTTTCACCTGTTGA 57.413 32.000 9.84 0.00 42.10 3.18
1365 1393 6.568462 CGTGGCTTGAAACTGTATGAAGAAAT 60.568 38.462 0.00 0.00 0.00 2.17
1369 1397 3.745975 TCGTGGCTTGAAACTGTATGAAG 59.254 43.478 0.00 0.00 0.00 3.02
1381 1409 0.103026 CGGAGATGATCGTGGCTTGA 59.897 55.000 0.00 0.00 0.00 3.02
1382 1410 0.179100 ACGGAGATGATCGTGGCTTG 60.179 55.000 0.00 0.00 38.25 4.01
1383 1411 2.202866 ACGGAGATGATCGTGGCTT 58.797 52.632 0.00 0.00 38.25 4.35
1384 1412 3.941081 ACGGAGATGATCGTGGCT 58.059 55.556 0.00 0.00 38.25 4.75
1388 1416 0.746923 TCGACCACGGAGATGATCGT 60.747 55.000 0.00 0.00 40.49 3.73
1389 1417 0.040870 CTCGACCACGGAGATGATCG 60.041 60.000 0.00 0.00 40.21 3.69
1390 1418 0.318275 GCTCGACCACGGAGATGATC 60.318 60.000 0.00 0.00 40.21 2.92
1399 1427 2.096909 CAGTTTAGTTTGCTCGACCACG 60.097 50.000 0.00 0.00 41.26 4.94
1406 1434 3.424962 GCGATGGTCAGTTTAGTTTGCTC 60.425 47.826 0.00 0.00 0.00 4.26
1428 9148 0.179936 GATCAGACCAAGGGGCTCTG 59.820 60.000 0.00 0.00 35.03 3.35
1450 9170 1.334869 ACAAGCCACGAAGAAGCAAAG 59.665 47.619 0.00 0.00 0.00 2.77
1614 9352 5.646606 TGTCAAACAAAACCAAGCTAAGAC 58.353 37.500 0.00 0.00 0.00 3.01
2798 10556 2.802719 TGGGTAGCTCAATTTTGGTCC 58.197 47.619 0.00 0.00 0.00 4.46
3225 11001 1.474677 GCATGGCTGACTGCTCTACAT 60.475 52.381 4.20 0.00 42.39 2.29
3581 11357 8.710239 TGCAGGGTATCATCTAGTGTATAAAAA 58.290 33.333 0.00 0.00 0.00 1.94
3679 11455 9.553064 CTATCACTGTGCCTTCTAAAATCTTAT 57.447 33.333 2.12 0.00 0.00 1.73
3753 11529 8.966069 AGACCCATTTTTAAGACTAGCTTATC 57.034 34.615 0.00 0.00 38.79 1.75
3880 11664 6.548321 TGGCTGTCCCTTTCTTATTTTAAGA 58.452 36.000 0.00 0.00 0.00 2.10
4196 11983 5.784578 ACCCCTTGACTTAAACAATCAAC 57.215 39.130 0.00 0.00 0.00 3.18
4854 12780 7.093509 GGGGTATAAATGAACTGGTGACATTTT 60.094 37.037 17.04 11.28 41.97 1.82
5141 13117 9.871238 GAGGTAACAGAAGATAATTAGTTCACA 57.129 33.333 11.17 0.00 41.41 3.58
5233 13214 1.122632 TCCAGTACGCAACCCCTTCA 61.123 55.000 0.00 0.00 0.00 3.02
5752 13740 1.001020 TGCCCAGCCAAGGTATGTG 60.001 57.895 0.00 0.00 0.00 3.21
5898 13886 4.997905 AACATGACACATTTCAGTCTCG 57.002 40.909 0.00 0.00 35.81 4.04
5914 13902 1.809547 TGACGGTGCCATTGTAACATG 59.190 47.619 0.00 0.00 0.00 3.21
6379 14535 8.536407 ACAGAACAATTGCAACGTAAAAATAAC 58.464 29.630 0.00 0.00 0.00 1.89
6392 14548 9.008965 AGTAATAACATGTACAGAACAATTGCA 57.991 29.630 5.05 0.00 42.70 4.08
6465 14621 7.905604 AGTGAGAACATTCAAACGATGATTA 57.094 32.000 0.00 0.00 38.03 1.75
6484 14640 9.261180 ACGATTTGATTATACAACCATAGTGAG 57.739 33.333 0.00 0.00 0.00 3.51
6506 14662 1.139654 ACATGCATGCTACAGGACGAT 59.860 47.619 26.53 0.00 0.00 3.73
6651 14807 5.288015 CACCACAGTGTTGAAATGCATAAA 58.712 37.500 0.00 0.00 39.30 1.40
6660 14816 2.223803 AAACCCACCACAGTGTTGAA 57.776 45.000 0.00 0.00 42.88 2.69
6664 14820 3.181434 ACATCATAAACCCACCACAGTGT 60.181 43.478 0.00 0.00 42.88 3.55
6665 14821 3.191162 CACATCATAAACCCACCACAGTG 59.809 47.826 0.00 0.00 44.12 3.66
6666 14822 3.420893 CACATCATAAACCCACCACAGT 58.579 45.455 0.00 0.00 0.00 3.55
6762 14925 5.527951 TGAATGCATGTTTCAGGTTTGTAC 58.472 37.500 0.00 0.00 0.00 2.90
6770 14933 4.744570 AGCAGAATGAATGCATGTTTCAG 58.255 39.130 15.35 2.51 46.31 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.