Multiple sequence alignment - TraesCS7D01G197800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G197800 chr7D 100.000 6305 0 0 1 6305 154183156 154189460 0.000000e+00 11644.0
1 TraesCS7D01G197800 chr7D 85.654 474 48 12 2212 2678 154184908 154185368 1.230000e-131 481.0
2 TraesCS7D01G197800 chr7D 85.654 474 48 12 1753 2213 154185367 154185833 1.230000e-131 481.0
3 TraesCS7D01G197800 chr7D 97.455 275 4 2 267 540 472096007 472096279 3.440000e-127 466.0
4 TraesCS7D01G197800 chr7D 94.611 167 8 1 2747 2913 397555081 397554916 2.260000e-64 257.0
5 TraesCS7D01G197800 chr7D 82.960 223 35 3 5815 6035 51414577 51414356 1.390000e-46 198.0
6 TraesCS7D01G197800 chr7D 85.340 191 18 7 2492 2678 445904063 445903879 8.340000e-44 189.0
7 TraesCS7D01G197800 chr7D 97.619 42 1 0 499 540 78317478 78317437 8.770000e-09 73.1
8 TraesCS7D01G197800 chr7B 96.075 2930 91 12 2910 5819 116387071 116389996 0.000000e+00 4752.0
9 TraesCS7D01G197800 chr7B 93.948 1388 52 19 715 2093 116384942 116386306 0.000000e+00 2069.0
10 TraesCS7D01G197800 chr7B 96.391 665 20 4 2092 2753 116386411 116387074 0.000000e+00 1092.0
11 TraesCS7D01G197800 chr7B 92.664 259 11 3 5943 6196 116389996 116390251 3.590000e-97 366.0
12 TraesCS7D01G197800 chr7B 84.375 352 38 8 2212 2557 116385966 116386306 4.710000e-86 329.0
13 TraesCS7D01G197800 chr7B 93.194 191 11 2 536 726 116383703 116383891 4.810000e-71 279.0
14 TraesCS7D01G197800 chr7B 86.127 173 18 6 2510 2678 70430106 70429936 1.400000e-41 182.0
15 TraesCS7D01G197800 chr7B 86.525 141 16 3 88 226 614756216 614756355 1.090000e-32 152.0
16 TraesCS7D01G197800 chr7B 92.135 89 4 3 6194 6280 226902887 226902800 8.580000e-24 122.0
17 TraesCS7D01G197800 chr7A 94.674 3004 107 18 2212 5176 156112849 156115838 0.000000e+00 4612.0
18 TraesCS7D01G197800 chr7A 91.118 1700 62 39 536 2213 156111680 156113312 0.000000e+00 2220.0
19 TraesCS7D01G197800 chr7A 93.719 1003 38 10 5178 6156 156116004 156117005 0.000000e+00 1480.0
20 TraesCS7D01G197800 chr7A 95.210 167 7 1 2747 2913 451519807 451519972 4.850000e-66 263.0
21 TraesCS7D01G197800 chr7A 93.452 168 11 0 2746 2913 494786823 494786990 3.770000e-62 250.0
22 TraesCS7D01G197800 chr7A 94.000 50 3 0 227 276 652486646 652486597 6.780000e-10 76.8
23 TraesCS7D01G197800 chr5A 84.379 749 98 16 1001 1746 685865747 685866479 0.000000e+00 717.0
24 TraesCS7D01G197800 chr5A 81.696 672 88 23 3039 3700 685866797 685867443 1.560000e-145 527.0
25 TraesCS7D01G197800 chr5A 82.573 482 59 11 3850 4310 685867458 685867935 9.850000e-108 401.0
26 TraesCS7D01G197800 chr5A 94.048 168 9 1 2746 2913 320214410 320214244 2.920000e-63 254.0
27 TraesCS7D01G197800 chr5A 81.304 230 41 2 5809 6037 594414671 594414443 1.080000e-42 185.0
28 TraesCS7D01G197800 chr4D 90.295 474 44 2 1001 1473 502533205 502533677 2.500000e-173 619.0
29 TraesCS7D01G197800 chr4D 84.291 592 73 10 3129 3700 502534468 502535059 1.530000e-155 560.0
30 TraesCS7D01G197800 chr4D 88.542 192 20 2 1555 1746 502533732 502533921 1.370000e-56 231.0
31 TraesCS7D01G197800 chr4D 93.103 87 6 0 5207 5293 502536031 502536117 1.840000e-25 128.0
32 TraesCS7D01G197800 chr4D 100.000 42 0 0 499 540 445379555 445379596 1.880000e-10 78.7
33 TraesCS7D01G197800 chr3D 96.000 275 7 3 267 540 579176110 579176381 1.610000e-120 444.0
34 TraesCS7D01G197800 chr3D 96.310 271 7 3 267 537 494235914 494236181 5.800000e-120 442.0
35 TraesCS7D01G197800 chr3D 94.643 168 9 0 2747 2914 593088470 593088637 1.740000e-65 261.0
36 TraesCS7D01G197800 chr3D 86.425 221 24 6 4075 4293 421608280 421608064 2.940000e-58 237.0
37 TraesCS7D01G197800 chr3D 88.961 154 15 2 2052 2203 380290768 380290615 8.340000e-44 189.0
38 TraesCS7D01G197800 chr3D 94.000 100 5 1 6191 6290 336805344 336805442 3.940000e-32 150.0
39 TraesCS7D01G197800 chr3D 92.453 53 4 0 224 276 86925607 86925659 6.780000e-10 76.8
40 TraesCS7D01G197800 chr2D 99.099 222 1 1 319 540 353064572 353064792 1.270000e-106 398.0
41 TraesCS7D01G197800 chr2D 93.827 81 5 0 6192 6272 35026492 35026572 8.580000e-24 122.0
42 TraesCS7D01G197800 chr2D 92.683 82 6 0 6191 6272 13622452 13622533 1.110000e-22 119.0
43 TraesCS7D01G197800 chr5B 93.805 226 14 0 283 508 536520315 536520540 2.180000e-89 340.0
44 TraesCS7D01G197800 chr5B 91.228 171 14 1 2058 2227 512581639 512581469 1.370000e-56 231.0
45 TraesCS7D01G197800 chr5B 84.615 208 29 3 5832 6037 581133005 581132799 2.980000e-48 204.0
46 TraesCS7D01G197800 chr5B 89.873 158 13 3 2523 2678 512581639 512581483 3.850000e-47 200.0
47 TraesCS7D01G197800 chr5B 88.961 154 15 2 2052 2203 328852691 328852538 8.340000e-44 189.0
48 TraesCS7D01G197800 chr5B 90.805 87 5 3 6194 6278 384559488 384559403 5.170000e-21 113.0
49 TraesCS7D01G197800 chr5B 95.652 46 2 0 227 272 118818221 118818176 2.440000e-09 75.0
50 TraesCS7D01G197800 chr5B 97.561 41 1 0 499 539 536520567 536520607 3.150000e-08 71.3
51 TraesCS7D01G197800 chr5B 92.000 50 4 0 227 276 636399034 636399083 3.150000e-08 71.3
52 TraesCS7D01G197800 chr4B 95.305 213 8 2 4080 4290 211583904 211584116 2.820000e-88 337.0
53 TraesCS7D01G197800 chr4B 83.265 245 36 4 5812 6054 368106049 368106290 2.960000e-53 220.0
54 TraesCS7D01G197800 chr4B 91.071 112 10 0 3666 3777 211583785 211583896 1.090000e-32 152.0
55 TraesCS7D01G197800 chr4B 100.000 42 0 0 499 540 554566973 554566932 1.880000e-10 78.7
56 TraesCS7D01G197800 chr1D 93.363 226 9 1 279 504 80846387 80846168 4.710000e-86 329.0
57 TraesCS7D01G197800 chr1D 93.939 165 10 0 2751 2915 286378320 286378484 3.770000e-62 250.0
58 TraesCS7D01G197800 chr1D 92.941 170 11 1 2059 2227 21822472 21822303 4.880000e-61 246.0
59 TraesCS7D01G197800 chr1D 91.720 157 10 3 2524 2678 21822472 21822317 1.380000e-51 215.0
60 TraesCS7D01G197800 chr1D 84.672 137 18 3 92 226 38724231 38724366 3.970000e-27 134.0
61 TraesCS7D01G197800 chr1D 84.685 111 13 4 6182 6290 484555662 484555770 2.400000e-19 108.0
62 TraesCS7D01G197800 chr1D 100.000 41 0 0 499 539 80846135 80846095 6.780000e-10 76.8
63 TraesCS7D01G197800 chr1A 94.479 163 9 0 2752 2914 39438838 39439000 1.050000e-62 252.0
64 TraesCS7D01G197800 chr6B 94.444 162 9 0 2752 2913 481858012 481857851 3.770000e-62 250.0
65 TraesCS7D01G197800 chr6B 86.000 100 12 2 6197 6295 71299477 71299379 8.640000e-19 106.0
66 TraesCS7D01G197800 chr6B 92.857 56 3 1 217 272 41421880 41421826 5.240000e-11 80.5
67 TraesCS7D01G197800 chr6B 93.617 47 3 0 227 273 622743976 622743930 3.150000e-08 71.3
68 TraesCS7D01G197800 chr6B 93.617 47 3 0 227 273 622749373 622749327 3.150000e-08 71.3
69 TraesCS7D01G197800 chr6D 83.730 252 36 4 5807 6055 433481150 433481399 3.800000e-57 233.0
70 TraesCS7D01G197800 chr2B 91.071 168 14 1 2058 2224 357884360 357884527 6.360000e-55 226.0
71 TraesCS7D01G197800 chr2B 91.156 147 10 3 2523 2667 357884360 357884505 4.990000e-46 196.0
72 TraesCS7D01G197800 chr2B 95.556 45 1 1 223 266 19377376 19377332 3.150000e-08 71.3
73 TraesCS7D01G197800 chr3B 84.932 219 31 2 5837 6054 685258407 685258190 2.960000e-53 220.0
74 TraesCS7D01G197800 chr3B 90.000 170 15 2 2059 2227 324234831 324234663 1.060000e-52 219.0
75 TraesCS7D01G197800 chr3B 92.537 134 8 2 2524 2655 324234831 324234698 2.320000e-44 191.0
76 TraesCS7D01G197800 chr3B 88.119 101 8 4 6188 6285 380683846 380683945 3.990000e-22 117.0
77 TraesCS7D01G197800 chr3B 95.833 48 2 0 225 272 15048297 15048250 1.880000e-10 78.7
78 TraesCS7D01G197800 chr3B 84.483 58 4 5 2720 2776 422508943 422508996 1.100000e-02 52.8
79 TraesCS7D01G197800 chr4A 84.071 226 32 4 5815 6037 160254826 160254602 1.380000e-51 215.0
80 TraesCS7D01G197800 chr4A 82.488 217 29 9 5815 6027 139611871 139611660 1.400000e-41 182.0
81 TraesCS7D01G197800 chr1B 86.986 146 12 5 88 226 433423050 433422905 2.350000e-34 158.0
82 TraesCS7D01G197800 chr1B 91.111 90 7 1 6191 6279 312230083 312230172 3.090000e-23 121.0
83 TraesCS7D01G197800 chr5D 89.610 77 8 0 89 165 399849203 399849279 1.450000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G197800 chr7D 154183156 154189460 6304 False 11644.000000 11644 100.000000 1 6305 1 chr7D.!!$F1 6304
1 TraesCS7D01G197800 chr7D 154184908 154185833 925 False 481.000000 481 85.654000 1753 2678 2 chr7D.!!$F3 925
2 TraesCS7D01G197800 chr7B 116383703 116390251 6548 False 1481.166667 4752 92.774500 536 6196 6 chr7B.!!$F2 5660
3 TraesCS7D01G197800 chr7A 156111680 156117005 5325 False 2770.666667 4612 93.170333 536 6156 3 chr7A.!!$F3 5620
4 TraesCS7D01G197800 chr5A 685865747 685867935 2188 False 548.333333 717 82.882667 1001 4310 3 chr5A.!!$F1 3309
5 TraesCS7D01G197800 chr4D 502533205 502536117 2912 False 384.500000 619 89.057750 1001 5293 4 chr4D.!!$F2 4292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.390209 GCATGGCAAGCCGAACATTT 60.390 50.0 2.72 0.00 39.42 2.32 F
1483 2562 0.030638 CAAGCAGGTTCGTTGGTTGG 59.969 55.0 8.77 0.00 45.45 3.77 F
1488 2567 0.033894 AGGTTCGTTGGTTGGTTGGT 60.034 50.0 0.00 0.00 0.00 3.67 F
1649 2735 0.035152 TGGCGCTCATCTTGGATGTT 60.035 50.0 7.64 0.00 0.00 2.71 F
1746 2832 0.645496 TGGGCTTCTCAGGGGGTATA 59.355 55.0 0.00 0.00 0.00 1.47 F
3278 4608 2.634982 TGCAAATTGACATCTTCGGC 57.365 45.0 0.00 0.00 0.00 5.54 F
4628 6017 1.789523 TTGAGCCGGCTAACTCCTAT 58.210 50.0 32.97 3.02 31.65 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1649 2735 1.366111 GAGGGTATTTGAAGCGCGCA 61.366 55.000 35.1 13.06 0.00 6.09 R
3032 4295 2.969628 AATGAAGAGGCAGGTCTACG 57.030 50.000 0.0 0.00 0.00 3.51 R
3365 4704 3.389329 TCTCATCCTTCAGTAGATTGGGC 59.611 47.826 0.0 0.00 0.00 5.36 R
3550 4889 3.887621 ATCAGCATCAGCAAAGCAAAT 57.112 38.095 0.0 0.00 45.49 2.32 R
3912 5279 6.146021 GGATGTTGGTAAAAGCAAATCAACAG 59.854 38.462 11.4 0.00 44.60 3.16 R
4811 6206 2.557056 CTGGTTCCGAGTACTGACTTGA 59.443 50.000 0.0 0.00 39.21 3.02 R
5688 7374 0.179065 TCATTGCGATCTGGCTCTGG 60.179 55.000 0.0 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.524870 AAAAGATTCTTCATCCGAACAATTTG 57.475 30.769 0.00 0.00 31.20 2.32
42 43 6.199937 AGATTCTTCATCCGAACAATTTGG 57.800 37.500 0.78 0.00 35.37 3.28
43 44 5.711976 AGATTCTTCATCCGAACAATTTGGT 59.288 36.000 0.78 0.00 35.57 3.67
44 45 5.782893 TTCTTCATCCGAACAATTTGGTT 57.217 34.783 0.78 0.00 35.57 3.67
45 46 5.782893 TCTTCATCCGAACAATTTGGTTT 57.217 34.783 0.78 0.00 35.57 3.27
46 47 6.155475 TCTTCATCCGAACAATTTGGTTTT 57.845 33.333 0.78 0.00 35.57 2.43
47 48 5.982516 TCTTCATCCGAACAATTTGGTTTTG 59.017 36.000 0.78 0.00 35.57 2.44
48 49 4.626042 TCATCCGAACAATTTGGTTTTGG 58.374 39.130 0.78 1.08 35.57 3.28
49 50 2.827652 TCCGAACAATTTGGTTTTGGC 58.172 42.857 0.78 0.00 35.57 4.52
50 51 2.432510 TCCGAACAATTTGGTTTTGGCT 59.567 40.909 0.78 0.00 35.57 4.75
51 52 3.637229 TCCGAACAATTTGGTTTTGGCTA 59.363 39.130 0.78 0.00 35.57 3.93
52 53 3.738791 CCGAACAATTTGGTTTTGGCTAC 59.261 43.478 0.78 0.00 0.00 3.58
53 54 4.500716 CCGAACAATTTGGTTTTGGCTACT 60.501 41.667 0.78 0.00 0.00 2.57
54 55 5.278561 CCGAACAATTTGGTTTTGGCTACTA 60.279 40.000 0.78 0.00 0.00 1.82
55 56 6.386654 CGAACAATTTGGTTTTGGCTACTAT 58.613 36.000 0.78 0.00 0.00 2.12
56 57 6.866248 CGAACAATTTGGTTTTGGCTACTATT 59.134 34.615 0.78 0.00 0.00 1.73
57 58 7.061789 CGAACAATTTGGTTTTGGCTACTATTC 59.938 37.037 0.78 0.00 0.00 1.75
58 59 7.296628 ACAATTTGGTTTTGGCTACTATTCA 57.703 32.000 0.78 0.00 0.00 2.57
59 60 7.906327 ACAATTTGGTTTTGGCTACTATTCAT 58.094 30.769 0.78 0.00 0.00 2.57
60 61 7.818930 ACAATTTGGTTTTGGCTACTATTCATG 59.181 33.333 0.78 0.00 0.00 3.07
61 62 5.913137 TTGGTTTTGGCTACTATTCATGG 57.087 39.130 0.00 0.00 0.00 3.66
62 63 4.929479 TGGTTTTGGCTACTATTCATGGT 58.071 39.130 0.00 0.00 0.00 3.55
63 64 5.329399 TGGTTTTGGCTACTATTCATGGTT 58.671 37.500 0.00 0.00 0.00 3.67
64 65 6.486056 TGGTTTTGGCTACTATTCATGGTTA 58.514 36.000 0.00 0.00 0.00 2.85
65 66 7.122715 TGGTTTTGGCTACTATTCATGGTTAT 58.877 34.615 0.00 0.00 0.00 1.89
66 67 8.275758 TGGTTTTGGCTACTATTCATGGTTATA 58.724 33.333 0.00 0.00 0.00 0.98
67 68 9.297037 GGTTTTGGCTACTATTCATGGTTATAT 57.703 33.333 0.00 0.00 0.00 0.86
71 72 9.860650 TTGGCTACTATTCATGGTTATATTTGT 57.139 29.630 0.00 0.00 0.00 2.83
72 73 9.502091 TGGCTACTATTCATGGTTATATTTGTC 57.498 33.333 0.00 0.00 0.00 3.18
73 74 9.502091 GGCTACTATTCATGGTTATATTTGTCA 57.498 33.333 0.00 0.00 0.00 3.58
122 123 5.698832 TGAACGTTCAGATTTTAAGCATGG 58.301 37.500 26.53 0.00 32.50 3.66
123 124 4.096732 ACGTTCAGATTTTAAGCATGGC 57.903 40.909 0.00 0.00 0.00 4.40
124 125 3.505680 ACGTTCAGATTTTAAGCATGGCA 59.494 39.130 0.00 0.00 0.00 4.92
125 126 4.022416 ACGTTCAGATTTTAAGCATGGCAA 60.022 37.500 0.00 0.00 0.00 4.52
126 127 4.560035 CGTTCAGATTTTAAGCATGGCAAG 59.440 41.667 0.00 0.00 0.00 4.01
127 128 4.114058 TCAGATTTTAAGCATGGCAAGC 57.886 40.909 6.60 6.60 0.00 4.01
128 129 3.119029 TCAGATTTTAAGCATGGCAAGCC 60.119 43.478 11.59 3.61 0.00 4.35
129 130 2.159198 AGATTTTAAGCATGGCAAGCCG 60.159 45.455 11.59 0.00 39.42 5.52
130 131 1.252175 TTTTAAGCATGGCAAGCCGA 58.748 45.000 11.59 0.00 39.42 5.54
131 132 1.252175 TTTAAGCATGGCAAGCCGAA 58.748 45.000 11.59 2.90 39.42 4.30
132 133 0.525761 TTAAGCATGGCAAGCCGAAC 59.474 50.000 11.59 0.00 39.42 3.95
133 134 0.607762 TAAGCATGGCAAGCCGAACA 60.608 50.000 11.59 0.00 39.42 3.18
134 135 1.252904 AAGCATGGCAAGCCGAACAT 61.253 50.000 11.59 0.00 39.42 2.71
135 136 1.216178 GCATGGCAAGCCGAACATT 59.784 52.632 2.72 0.00 39.42 2.71
136 137 0.390209 GCATGGCAAGCCGAACATTT 60.390 50.000 2.72 0.00 39.42 2.32
137 138 1.940752 GCATGGCAAGCCGAACATTTT 60.941 47.619 2.72 0.00 39.42 1.82
138 139 2.415776 CATGGCAAGCCGAACATTTTT 58.584 42.857 6.60 0.00 39.42 1.94
139 140 2.147436 TGGCAAGCCGAACATTTTTC 57.853 45.000 6.60 0.00 39.42 2.29
140 141 1.410517 TGGCAAGCCGAACATTTTTCA 59.589 42.857 6.60 0.00 39.42 2.69
141 142 2.036992 TGGCAAGCCGAACATTTTTCAT 59.963 40.909 6.60 0.00 39.42 2.57
142 143 2.412770 GGCAAGCCGAACATTTTTCATG 59.587 45.455 0.00 0.00 0.00 3.07
143 144 2.412770 GCAAGCCGAACATTTTTCATGG 59.587 45.455 0.00 0.00 0.00 3.66
144 145 2.368655 AGCCGAACATTTTTCATGGC 57.631 45.000 0.00 0.00 41.27 4.40
145 146 1.617850 AGCCGAACATTTTTCATGGCA 59.382 42.857 2.94 0.00 43.35 4.92
146 147 2.036992 AGCCGAACATTTTTCATGGCAA 59.963 40.909 2.94 0.00 43.35 4.52
147 148 2.157474 GCCGAACATTTTTCATGGCAAC 59.843 45.455 0.00 0.00 40.66 4.17
148 149 3.652274 CCGAACATTTTTCATGGCAACT 58.348 40.909 0.00 0.00 37.61 3.16
149 150 4.057432 CCGAACATTTTTCATGGCAACTT 58.943 39.130 0.00 0.00 37.61 2.66
150 151 4.150451 CCGAACATTTTTCATGGCAACTTC 59.850 41.667 0.00 0.00 37.61 3.01
151 152 4.744137 CGAACATTTTTCATGGCAACTTCA 59.256 37.500 0.00 0.00 37.61 3.02
152 153 5.107760 CGAACATTTTTCATGGCAACTTCAG 60.108 40.000 0.00 0.00 37.61 3.02
153 154 5.280654 ACATTTTTCATGGCAACTTCAGT 57.719 34.783 0.00 0.00 37.61 3.41
154 155 5.673514 ACATTTTTCATGGCAACTTCAGTT 58.326 33.333 0.00 0.00 39.12 3.16
155 156 5.754890 ACATTTTTCATGGCAACTTCAGTTC 59.245 36.000 0.00 0.00 35.83 3.01
156 157 4.998671 TTTTCATGGCAACTTCAGTTCA 57.001 36.364 0.00 0.00 35.83 3.18
157 158 3.988379 TTCATGGCAACTTCAGTTCAC 57.012 42.857 0.00 0.00 35.83 3.18
158 159 2.929641 TCATGGCAACTTCAGTTCACA 58.070 42.857 0.00 0.00 35.83 3.58
159 160 2.618241 TCATGGCAACTTCAGTTCACAC 59.382 45.455 0.00 0.00 35.83 3.82
160 161 1.013596 TGGCAACTTCAGTTCACACG 58.986 50.000 0.00 0.00 35.83 4.49
161 162 1.295792 GGCAACTTCAGTTCACACGA 58.704 50.000 0.00 0.00 35.83 4.35
162 163 1.261619 GGCAACTTCAGTTCACACGAG 59.738 52.381 0.00 0.00 35.83 4.18
163 164 1.261619 GCAACTTCAGTTCACACGAGG 59.738 52.381 0.00 0.00 35.83 4.63
164 165 2.550978 CAACTTCAGTTCACACGAGGT 58.449 47.619 0.00 0.00 35.83 3.85
165 166 2.936498 CAACTTCAGTTCACACGAGGTT 59.064 45.455 0.00 0.00 35.83 3.50
166 167 2.550978 ACTTCAGTTCACACGAGGTTG 58.449 47.619 0.00 0.00 0.00 3.77
167 168 1.867233 CTTCAGTTCACACGAGGTTGG 59.133 52.381 0.00 0.00 0.00 3.77
168 169 1.116308 TCAGTTCACACGAGGTTGGA 58.884 50.000 0.00 0.00 0.00 3.53
169 170 1.483004 TCAGTTCACACGAGGTTGGAA 59.517 47.619 0.00 0.00 0.00 3.53
170 171 2.093394 TCAGTTCACACGAGGTTGGAAA 60.093 45.455 0.00 0.00 0.00 3.13
171 172 2.680841 CAGTTCACACGAGGTTGGAAAA 59.319 45.455 0.00 0.00 0.00 2.29
172 173 2.681344 AGTTCACACGAGGTTGGAAAAC 59.319 45.455 0.00 0.00 0.00 2.43
173 174 2.404923 TCACACGAGGTTGGAAAACA 57.595 45.000 0.00 0.00 34.45 2.83
174 175 2.925724 TCACACGAGGTTGGAAAACAT 58.074 42.857 0.00 0.00 34.45 2.71
175 176 2.616376 TCACACGAGGTTGGAAAACATG 59.384 45.455 0.00 0.00 34.45 3.21
176 177 1.953686 ACACGAGGTTGGAAAACATGG 59.046 47.619 0.00 0.00 34.45 3.66
177 178 0.958822 ACGAGGTTGGAAAACATGGC 59.041 50.000 0.00 0.00 34.45 4.40
178 179 0.958091 CGAGGTTGGAAAACATGGCA 59.042 50.000 0.00 0.00 34.45 4.92
179 180 1.339610 CGAGGTTGGAAAACATGGCAA 59.660 47.619 0.00 0.00 34.45 4.52
180 181 2.029110 CGAGGTTGGAAAACATGGCAAT 60.029 45.455 0.00 0.00 34.45 3.56
181 182 3.328505 GAGGTTGGAAAACATGGCAATG 58.671 45.455 0.00 0.00 34.45 2.82
208 209 3.603158 AAAAACAAAGCGGGACAAAGT 57.397 38.095 0.00 0.00 0.00 2.66
209 210 3.603158 AAAACAAAGCGGGACAAAGTT 57.397 38.095 0.00 0.00 0.00 2.66
210 211 2.577449 AACAAAGCGGGACAAAGTTG 57.423 45.000 0.00 0.00 0.00 3.16
211 212 1.470051 ACAAAGCGGGACAAAGTTGT 58.530 45.000 0.00 0.00 45.65 3.32
229 230 5.412526 GTTGTCATGTCTTAACAACGGAA 57.587 39.130 10.50 0.00 42.14 4.30
230 231 5.812652 GTTGTCATGTCTTAACAACGGAAA 58.187 37.500 10.50 0.00 42.14 3.13
231 232 6.259638 GTTGTCATGTCTTAACAACGGAAAA 58.740 36.000 10.50 0.00 42.14 2.29
232 233 6.438259 TGTCATGTCTTAACAACGGAAAAA 57.562 33.333 0.00 0.00 39.30 1.94
233 234 6.491394 TGTCATGTCTTAACAACGGAAAAAG 58.509 36.000 0.00 0.00 39.30 2.27
234 235 6.094325 TGTCATGTCTTAACAACGGAAAAAGT 59.906 34.615 0.00 0.00 39.30 2.66
235 236 6.631636 GTCATGTCTTAACAACGGAAAAAGTC 59.368 38.462 0.00 0.00 39.30 3.01
236 237 5.488645 TGTCTTAACAACGGAAAAAGTCC 57.511 39.130 0.00 0.00 36.25 3.85
237 238 4.942483 TGTCTTAACAACGGAAAAAGTCCA 59.058 37.500 0.00 0.00 38.27 4.02
238 239 5.591067 TGTCTTAACAACGGAAAAAGTCCAT 59.409 36.000 0.00 0.00 38.27 3.41
239 240 6.095720 TGTCTTAACAACGGAAAAAGTCCATT 59.904 34.615 0.00 0.00 38.27 3.16
240 241 7.363094 TGTCTTAACAACGGAAAAAGTCCATTT 60.363 33.333 0.00 0.00 38.27 2.32
250 251 6.822442 GGAAAAAGTCCATTTTAAACCCTGA 58.178 36.000 0.00 0.00 46.97 3.86
251 252 7.276658 GGAAAAAGTCCATTTTAAACCCTGAA 58.723 34.615 0.00 0.00 46.97 3.02
252 253 7.225931 GGAAAAAGTCCATTTTAAACCCTGAAC 59.774 37.037 0.00 0.00 46.97 3.18
253 254 7.432148 AAAAGTCCATTTTAAACCCTGAACT 57.568 32.000 0.00 0.00 39.36 3.01
254 255 6.650427 AAGTCCATTTTAAACCCTGAACTC 57.350 37.500 0.00 0.00 0.00 3.01
255 256 4.760204 AGTCCATTTTAAACCCTGAACTCG 59.240 41.667 0.00 0.00 0.00 4.18
256 257 4.517832 GTCCATTTTAAACCCTGAACTCGT 59.482 41.667 0.00 0.00 0.00 4.18
257 258 5.702209 GTCCATTTTAAACCCTGAACTCGTA 59.298 40.000 0.00 0.00 0.00 3.43
258 259 5.935789 TCCATTTTAAACCCTGAACTCGTAG 59.064 40.000 0.00 0.00 0.00 3.51
259 260 5.935789 CCATTTTAAACCCTGAACTCGTAGA 59.064 40.000 0.00 0.00 0.00 2.59
271 272 3.344703 TCGTAGAGGTCGGGTGAAA 57.655 52.632 0.00 0.00 0.00 2.69
272 273 1.619654 TCGTAGAGGTCGGGTGAAAA 58.380 50.000 0.00 0.00 0.00 2.29
273 274 1.962807 TCGTAGAGGTCGGGTGAAAAA 59.037 47.619 0.00 0.00 0.00 1.94
305 306 9.974750 TTGTTTTATTTTTCAAATTCACGAACC 57.025 25.926 0.00 0.00 0.00 3.62
306 307 9.372369 TGTTTTATTTTTCAAATTCACGAACCT 57.628 25.926 0.00 0.00 0.00 3.50
313 314 8.758633 TTTTCAAATTCACGAACCTTTTTACA 57.241 26.923 0.00 0.00 0.00 2.41
314 315 7.979115 TTCAAATTCACGAACCTTTTTACAG 57.021 32.000 0.00 0.00 0.00 2.74
315 316 7.323049 TCAAATTCACGAACCTTTTTACAGA 57.677 32.000 0.00 0.00 0.00 3.41
316 317 7.763356 TCAAATTCACGAACCTTTTTACAGAA 58.237 30.769 0.00 0.00 0.00 3.02
317 318 7.698970 TCAAATTCACGAACCTTTTTACAGAAC 59.301 33.333 0.00 0.00 0.00 3.01
318 319 6.937436 ATTCACGAACCTTTTTACAGAACT 57.063 33.333 0.00 0.00 0.00 3.01
319 320 5.978934 TCACGAACCTTTTTACAGAACTC 57.021 39.130 0.00 0.00 0.00 3.01
320 321 5.421277 TCACGAACCTTTTTACAGAACTCA 58.579 37.500 0.00 0.00 0.00 3.41
321 322 6.053005 TCACGAACCTTTTTACAGAACTCAT 58.947 36.000 0.00 0.00 0.00 2.90
322 323 7.211573 TCACGAACCTTTTTACAGAACTCATA 58.788 34.615 0.00 0.00 0.00 2.15
323 324 7.384115 TCACGAACCTTTTTACAGAACTCATAG 59.616 37.037 0.00 0.00 0.00 2.23
324 325 7.384115 CACGAACCTTTTTACAGAACTCATAGA 59.616 37.037 0.00 0.00 0.00 1.98
325 326 8.095169 ACGAACCTTTTTACAGAACTCATAGAT 58.905 33.333 0.00 0.00 0.00 1.98
326 327 8.936864 CGAACCTTTTTACAGAACTCATAGATT 58.063 33.333 0.00 0.00 0.00 2.40
349 350 5.521906 TTTTCAAATCCGTGTCAAATCCA 57.478 34.783 0.00 0.00 0.00 3.41
350 351 4.497473 TTCAAATCCGTGTCAAATCCAC 57.503 40.909 0.00 0.00 0.00 4.02
358 359 2.767505 GTGTCAAATCCACGAACTCCT 58.232 47.619 0.00 0.00 0.00 3.69
359 360 3.139077 GTGTCAAATCCACGAACTCCTT 58.861 45.455 0.00 0.00 0.00 3.36
360 361 3.564225 GTGTCAAATCCACGAACTCCTTT 59.436 43.478 0.00 0.00 0.00 3.11
361 362 4.036380 GTGTCAAATCCACGAACTCCTTTT 59.964 41.667 0.00 0.00 0.00 2.27
362 363 4.274950 TGTCAAATCCACGAACTCCTTTTC 59.725 41.667 0.00 0.00 0.00 2.29
363 364 4.274950 GTCAAATCCACGAACTCCTTTTCA 59.725 41.667 0.00 0.00 0.00 2.69
364 365 4.884744 TCAAATCCACGAACTCCTTTTCAA 59.115 37.500 0.00 0.00 0.00 2.69
365 366 5.534654 TCAAATCCACGAACTCCTTTTCAAT 59.465 36.000 0.00 0.00 0.00 2.57
366 367 6.040391 TCAAATCCACGAACTCCTTTTCAATT 59.960 34.615 0.00 0.00 0.00 2.32
367 368 6.405278 AATCCACGAACTCCTTTTCAATTT 57.595 33.333 0.00 0.00 0.00 1.82
368 369 7.519032 AATCCACGAACTCCTTTTCAATTTA 57.481 32.000 0.00 0.00 0.00 1.40
369 370 7.703058 ATCCACGAACTCCTTTTCAATTTAT 57.297 32.000 0.00 0.00 0.00 1.40
370 371 8.801882 ATCCACGAACTCCTTTTCAATTTATA 57.198 30.769 0.00 0.00 0.00 0.98
371 372 8.624367 TCCACGAACTCCTTTTCAATTTATAA 57.376 30.769 0.00 0.00 0.00 0.98
372 373 9.238368 TCCACGAACTCCTTTTCAATTTATAAT 57.762 29.630 0.00 0.00 0.00 1.28
373 374 9.855021 CCACGAACTCCTTTTCAATTTATAATT 57.145 29.630 0.00 0.00 0.00 1.40
394 395 9.996554 ATAATTTTTCCCGAAGAAAGTGAATTT 57.003 25.926 11.14 0.00 45.11 1.82
395 396 8.731275 AATTTTTCCCGAAGAAAGTGAATTTT 57.269 26.923 1.68 0.00 45.11 1.82
396 397 8.731275 ATTTTTCCCGAAGAAAGTGAATTTTT 57.269 26.923 1.68 0.00 45.11 1.94
418 419 8.993404 TTTTTCCCAAATCCATTGAATTTTCT 57.007 26.923 0.00 0.00 41.85 2.52
419 420 8.993404 TTTTCCCAAATCCATTGAATTTTCTT 57.007 26.923 0.00 0.00 41.85 2.52
420 421 8.993404 TTTCCCAAATCCATTGAATTTTCTTT 57.007 26.923 0.00 0.00 41.85 2.52
421 422 8.993404 TTCCCAAATCCATTGAATTTTCTTTT 57.007 26.923 0.00 0.00 41.85 2.27
422 423 8.393671 TCCCAAATCCATTGAATTTTCTTTTG 57.606 30.769 0.00 0.00 41.85 2.44
423 424 8.216423 TCCCAAATCCATTGAATTTTCTTTTGA 58.784 29.630 0.00 0.00 41.85 2.69
424 425 8.848182 CCCAAATCCATTGAATTTTCTTTTGAA 58.152 29.630 0.00 0.00 41.85 2.69
436 437 5.514274 TTTCTTTTGAAAATCCGTGAGCT 57.486 34.783 0.00 0.00 44.51 4.09
437 438 5.514274 TTCTTTTGAAAATCCGTGAGCTT 57.486 34.783 0.00 0.00 35.17 3.74
438 439 5.108385 TCTTTTGAAAATCCGTGAGCTTC 57.892 39.130 0.00 0.00 0.00 3.86
439 440 4.821805 TCTTTTGAAAATCCGTGAGCTTCT 59.178 37.500 0.00 0.00 0.00 2.85
440 441 5.299279 TCTTTTGAAAATCCGTGAGCTTCTT 59.701 36.000 0.00 0.00 0.00 2.52
441 442 5.514274 TTTGAAAATCCGTGAGCTTCTTT 57.486 34.783 0.00 0.00 0.00 2.52
442 443 5.514274 TTGAAAATCCGTGAGCTTCTTTT 57.486 34.783 0.00 0.00 0.00 2.27
443 444 5.108385 TGAAAATCCGTGAGCTTCTTTTC 57.892 39.130 0.00 0.00 34.68 2.29
444 445 4.578516 TGAAAATCCGTGAGCTTCTTTTCA 59.421 37.500 11.54 11.54 39.15 2.69
445 446 5.067153 TGAAAATCCGTGAGCTTCTTTTCAA 59.933 36.000 12.47 3.09 38.76 2.69
446 447 5.514274 AAATCCGTGAGCTTCTTTTCAAA 57.486 34.783 0.00 0.00 0.00 2.69
447 448 5.514274 AATCCGTGAGCTTCTTTTCAAAA 57.486 34.783 0.00 0.00 0.00 2.44
448 449 5.712152 ATCCGTGAGCTTCTTTTCAAAAT 57.288 34.783 0.00 0.00 0.00 1.82
449 450 5.108385 TCCGTGAGCTTCTTTTCAAAATC 57.892 39.130 0.00 0.00 0.00 2.17
450 451 4.578516 TCCGTGAGCTTCTTTTCAAAATCA 59.421 37.500 0.00 0.00 0.00 2.57
451 452 5.241506 TCCGTGAGCTTCTTTTCAAAATCAT 59.758 36.000 0.00 0.00 0.00 2.45
452 453 5.922544 CCGTGAGCTTCTTTTCAAAATCATT 59.077 36.000 0.00 0.00 0.00 2.57
453 454 6.129009 CCGTGAGCTTCTTTTCAAAATCATTG 60.129 38.462 0.00 0.00 0.00 2.82
454 455 6.418819 CGTGAGCTTCTTTTCAAAATCATTGT 59.581 34.615 0.00 0.00 0.00 2.71
455 456 7.591057 CGTGAGCTTCTTTTCAAAATCATTGTA 59.409 33.333 0.00 0.00 0.00 2.41
456 457 8.694394 GTGAGCTTCTTTTCAAAATCATTGTAC 58.306 33.333 0.00 0.00 0.00 2.90
457 458 8.632679 TGAGCTTCTTTTCAAAATCATTGTACT 58.367 29.630 0.00 0.00 0.00 2.73
458 459 9.122613 GAGCTTCTTTTCAAAATCATTGTACTC 57.877 33.333 0.00 0.00 0.00 2.59
459 460 8.854117 AGCTTCTTTTCAAAATCATTGTACTCT 58.146 29.630 0.00 0.00 0.00 3.24
460 461 9.468532 GCTTCTTTTCAAAATCATTGTACTCTT 57.531 29.630 0.00 0.00 0.00 2.85
463 464 9.965824 TCTTTTCAAAATCATTGTACTCTTTCC 57.034 29.630 0.00 0.00 0.00 3.13
464 465 9.748708 CTTTTCAAAATCATTGTACTCTTTCCA 57.251 29.630 0.00 0.00 0.00 3.53
468 469 9.912634 TCAAAATCATTGTACTCTTTCCAAATC 57.087 29.630 0.00 0.00 0.00 2.17
469 470 9.918630 CAAAATCATTGTACTCTTTCCAAATCT 57.081 29.630 0.00 0.00 0.00 2.40
470 471 9.918630 AAAATCATTGTACTCTTTCCAAATCTG 57.081 29.630 0.00 0.00 0.00 2.90
471 472 8.641498 AATCATTGTACTCTTTCCAAATCTGT 57.359 30.769 0.00 0.00 0.00 3.41
472 473 7.439157 TCATTGTACTCTTTCCAAATCTGTG 57.561 36.000 0.00 0.00 0.00 3.66
473 474 7.223584 TCATTGTACTCTTTCCAAATCTGTGA 58.776 34.615 0.00 0.00 0.00 3.58
474 475 7.719193 TCATTGTACTCTTTCCAAATCTGTGAA 59.281 33.333 0.00 0.00 0.00 3.18
475 476 6.861065 TGTACTCTTTCCAAATCTGTGAAC 57.139 37.500 0.00 0.00 0.00 3.18
476 477 6.353323 TGTACTCTTTCCAAATCTGTGAACA 58.647 36.000 0.00 0.00 0.00 3.18
477 478 6.998074 TGTACTCTTTCCAAATCTGTGAACAT 59.002 34.615 0.00 0.00 0.00 2.71
478 479 6.966534 ACTCTTTCCAAATCTGTGAACATT 57.033 33.333 0.00 0.00 0.00 2.71
479 480 7.352079 ACTCTTTCCAAATCTGTGAACATTT 57.648 32.000 0.00 0.00 0.00 2.32
480 481 7.785033 ACTCTTTCCAAATCTGTGAACATTTT 58.215 30.769 0.00 0.00 0.00 1.82
481 482 8.260114 ACTCTTTCCAAATCTGTGAACATTTTT 58.740 29.630 0.00 0.00 0.00 1.94
527 528 8.506168 TTGTTTGCTATTTCCTACTAAGATGG 57.494 34.615 0.00 0.00 0.00 3.51
528 529 6.542370 TGTTTGCTATTTCCTACTAAGATGGC 59.458 38.462 0.00 0.00 0.00 4.40
529 530 5.228945 TGCTATTTCCTACTAAGATGGCC 57.771 43.478 0.00 0.00 0.00 5.36
530 531 4.658435 TGCTATTTCCTACTAAGATGGCCA 59.342 41.667 8.56 8.56 0.00 5.36
531 532 4.998033 GCTATTTCCTACTAAGATGGCCAC 59.002 45.833 8.16 1.58 0.00 5.01
532 533 3.926058 TTTCCTACTAAGATGGCCACC 57.074 47.619 8.16 0.00 0.00 4.61
533 534 1.410004 TCCTACTAAGATGGCCACCG 58.590 55.000 8.16 0.00 0.00 4.94
534 535 0.393077 CCTACTAAGATGGCCACCGG 59.607 60.000 8.16 0.00 0.00 5.28
626 627 2.473868 CGTCGCGTGCAGAATTTTGTAT 60.474 45.455 5.77 0.00 0.00 2.29
627 628 3.488489 GTCGCGTGCAGAATTTTGTATT 58.512 40.909 5.77 0.00 0.00 1.89
628 629 3.911964 GTCGCGTGCAGAATTTTGTATTT 59.088 39.130 5.77 0.00 0.00 1.40
629 630 4.381566 GTCGCGTGCAGAATTTTGTATTTT 59.618 37.500 5.77 0.00 0.00 1.82
630 631 5.566016 GTCGCGTGCAGAATTTTGTATTTTA 59.434 36.000 5.77 0.00 0.00 1.52
631 632 5.566016 TCGCGTGCAGAATTTTGTATTTTAC 59.434 36.000 5.77 0.00 0.00 2.01
632 633 5.494794 CGCGTGCAGAATTTTGTATTTTACG 60.495 40.000 0.00 0.00 0.00 3.18
676 677 5.751243 TCCTTTCTTTATTTCGGCATAGC 57.249 39.130 0.00 0.00 0.00 2.97
753 1816 3.247006 TCCGAAGAATTGACAGCTACC 57.753 47.619 0.00 0.00 0.00 3.18
755 1818 2.932614 CCGAAGAATTGACAGCTACCAG 59.067 50.000 0.00 0.00 0.00 4.00
756 1819 3.368427 CCGAAGAATTGACAGCTACCAGA 60.368 47.826 0.00 0.00 0.00 3.86
807 1876 4.265320 GGGCGAAATTTAAGCATCGAAAAG 59.735 41.667 16.71 0.00 37.48 2.27
890 1960 7.124147 GGTTGAAATCCTATTGAATTTCAGGGA 59.876 37.037 15.25 15.25 41.93 4.20
919 1990 5.105269 GGAGAGGAATAAAAACGAGGAGAGT 60.105 44.000 0.00 0.00 0.00 3.24
922 1993 4.461781 AGGAATAAAAACGAGGAGAGTCGA 59.538 41.667 0.00 0.00 42.85 4.20
923 1994 4.562000 GGAATAAAAACGAGGAGAGTCGAC 59.438 45.833 7.70 7.70 42.85 4.20
924 1995 4.778534 ATAAAAACGAGGAGAGTCGACA 57.221 40.909 19.50 0.00 42.85 4.35
925 1996 2.418983 AAAACGAGGAGAGTCGACAC 57.581 50.000 19.50 12.15 42.85 3.67
926 1997 1.606903 AAACGAGGAGAGTCGACACT 58.393 50.000 19.50 17.56 42.85 3.55
966 2037 3.446570 CCCGAAGCCGTCCGTACT 61.447 66.667 0.00 0.00 0.00 2.73
1476 2555 1.073199 CCCCTTCAAGCAGGTTCGT 59.927 57.895 0.00 0.00 30.96 3.85
1478 2557 0.593128 CCCTTCAAGCAGGTTCGTTG 59.407 55.000 0.00 0.00 30.96 4.10
1479 2558 0.593128 CCTTCAAGCAGGTTCGTTGG 59.407 55.000 0.00 0.00 0.00 3.77
1482 2561 3.549997 CAAGCAGGTTCGTTGGTTG 57.450 52.632 3.24 3.24 44.43 3.77
1483 2562 0.030638 CAAGCAGGTTCGTTGGTTGG 59.969 55.000 8.77 0.00 45.45 3.77
1485 2564 0.395173 AGCAGGTTCGTTGGTTGGTT 60.395 50.000 0.00 0.00 0.00 3.67
1486 2565 0.248866 GCAGGTTCGTTGGTTGGTTG 60.249 55.000 0.00 0.00 0.00 3.77
1487 2566 0.383949 CAGGTTCGTTGGTTGGTTGG 59.616 55.000 0.00 0.00 0.00 3.77
1488 2567 0.033894 AGGTTCGTTGGTTGGTTGGT 60.034 50.000 0.00 0.00 0.00 3.67
1489 2568 1.212441 AGGTTCGTTGGTTGGTTGGTA 59.788 47.619 0.00 0.00 0.00 3.25
1490 2569 1.605232 GGTTCGTTGGTTGGTTGGTAG 59.395 52.381 0.00 0.00 0.00 3.18
1491 2570 2.291365 GTTCGTTGGTTGGTTGGTAGT 58.709 47.619 0.00 0.00 0.00 2.73
1492 2571 1.956297 TCGTTGGTTGGTTGGTAGTG 58.044 50.000 0.00 0.00 0.00 2.74
1493 2572 0.309612 CGTTGGTTGGTTGGTAGTGC 59.690 55.000 0.00 0.00 0.00 4.40
1535 2614 2.239402 CAATTCCCCAAAATTCCCCCTG 59.761 50.000 0.00 0.00 0.00 4.45
1537 2616 0.871024 TCCCCAAAATTCCCCCTGTT 59.129 50.000 0.00 0.00 0.00 3.16
1649 2735 0.035152 TGGCGCTCATCTTGGATGTT 60.035 50.000 7.64 0.00 0.00 2.71
1746 2832 0.645496 TGGGCTTCTCAGGGGGTATA 59.355 55.000 0.00 0.00 0.00 1.47
2856 4118 6.712095 AGTGTAGATTCACTCATTTTGCTTCA 59.288 34.615 0.00 0.00 44.07 3.02
2864 4126 7.019774 TCACTCATTTTGCTTCATATGTAGC 57.980 36.000 23.24 23.24 38.67 3.58
2870 4132 6.633500 TTTTGCTTCATATGTAGCCCATAC 57.367 37.500 25.86 4.20 38.83 2.39
2889 4151 7.569240 CCCATACTGGAATCTCTAAAAAGACT 58.431 38.462 0.00 0.00 40.96 3.24
2965 4227 5.710099 TGTATCATGTGTCTGTGTAGAGTCA 59.290 40.000 0.00 0.00 32.48 3.41
3026 4289 6.878317 TGTACATTCAGATCTTTCCAGGTAG 58.122 40.000 0.00 0.00 0.00 3.18
3045 4308 2.772691 CCGACCGTAGACCTGCCTC 61.773 68.421 0.00 0.00 0.00 4.70
3104 4424 6.049955 TGTTGTTCTAGTTCTTCCTATGGG 57.950 41.667 0.00 0.00 0.00 4.00
3278 4608 2.634982 TGCAAATTGACATCTTCGGC 57.365 45.000 0.00 0.00 0.00 5.54
3365 4704 5.156355 GCAAAGTATTGTGTGGAAGATGTG 58.844 41.667 0.00 0.00 38.85 3.21
3509 4848 3.073650 AGGAAGGTGAATCAAGCTTGAGT 59.926 43.478 31.14 29.65 41.08 3.41
3912 5279 4.822350 GGTATCTAAAGGGAATGAACAGGC 59.178 45.833 0.00 0.00 0.00 4.85
3940 5307 4.497473 TTTGCTTTTACCAACATCCTCG 57.503 40.909 0.00 0.00 0.00 4.63
4252 5637 6.914757 GCTTTGTGCTAAATGGATCAGTAATC 59.085 38.462 0.00 0.00 38.95 1.75
4460 5845 3.320826 ACTTTCTGTTGTATTTGGGGTGC 59.679 43.478 0.00 0.00 0.00 5.01
4535 5924 8.141268 CAGCCTATTCCAACTTCTTTTTGTTTA 58.859 33.333 0.00 0.00 0.00 2.01
4628 6017 1.789523 TTGAGCCGGCTAACTCCTAT 58.210 50.000 32.97 3.02 31.65 2.57
4739 6128 4.457603 TGTATCAAACTGTTATGGGCACAC 59.542 41.667 0.00 0.00 0.00 3.82
4990 6492 3.710165 GGTATCTACTTTACCAGCCCAGT 59.290 47.826 0.00 0.00 39.18 4.00
5132 6654 6.779049 CCATTCATATTCCCATGAGAGGAAAA 59.221 38.462 6.08 0.00 46.21 2.29
5305 6991 0.104725 AGAGCCTCCATCCCCTTAGG 60.105 60.000 0.00 0.00 0.00 2.69
5441 7127 5.375956 AGGTAGGAGGACATACTAAGGATCA 59.624 44.000 0.00 0.00 34.31 2.92
5606 7292 4.895297 ACCATGAACACCAAGATTTCACTT 59.105 37.500 0.00 0.00 32.21 3.16
5637 7323 0.538057 CACCTGTCAGCCAATGTGGT 60.538 55.000 0.00 0.00 40.46 4.16
5660 7346 1.398390 CACGGAATAACCTGCTTCTGC 59.602 52.381 0.00 0.00 40.20 4.26
5670 7356 2.951269 TGCTTCTGCATGGAACTGG 58.049 52.632 0.00 0.00 45.31 4.00
5679 7365 4.164796 TCTGCATGGAACTGGTAGATTCAT 59.835 41.667 0.00 0.00 0.00 2.57
5681 7367 6.000246 TGCATGGAACTGGTAGATTCATAA 58.000 37.500 0.00 0.00 0.00 1.90
5685 7371 7.687837 GCATGGAACTGGTAGATTCATAAGAGA 60.688 40.741 0.00 0.00 0.00 3.10
5686 7372 7.113658 TGGAACTGGTAGATTCATAAGAGAC 57.886 40.000 0.00 0.00 0.00 3.36
5687 7373 6.183360 TGGAACTGGTAGATTCATAAGAGACG 60.183 42.308 0.00 0.00 0.00 4.18
5688 7374 5.189659 ACTGGTAGATTCATAAGAGACGC 57.810 43.478 0.00 0.00 0.00 5.19
5689 7375 4.038162 ACTGGTAGATTCATAAGAGACGCC 59.962 45.833 0.00 0.00 0.00 5.68
5690 7376 3.958147 TGGTAGATTCATAAGAGACGCCA 59.042 43.478 0.00 0.00 0.00 5.69
5691 7377 4.038042 TGGTAGATTCATAAGAGACGCCAG 59.962 45.833 0.00 0.00 0.00 4.85
5758 7451 4.081365 TGCTACTCGGTATCCAATTGTCAA 60.081 41.667 4.43 0.00 0.00 3.18
5793 7487 0.689745 TAATAGCCGGCCACCTGACT 60.690 55.000 26.15 3.86 0.00 3.41
5810 7504 4.273480 CCTGACTGTGAGTGTTGGTAAAAG 59.727 45.833 0.00 0.00 0.00 2.27
5813 7507 4.585879 ACTGTGAGTGTTGGTAAAAGTGT 58.414 39.130 0.00 0.00 0.00 3.55
5818 7512 6.314400 TGTGAGTGTTGGTAAAAGTGTTACTC 59.686 38.462 3.23 0.00 34.25 2.59
5819 7513 5.818857 TGAGTGTTGGTAAAAGTGTTACTCC 59.181 40.000 3.23 0.00 33.07 3.85
5820 7514 5.128205 AGTGTTGGTAAAAGTGTTACTCCC 58.872 41.667 3.23 0.00 0.00 4.30
5821 7515 5.104235 AGTGTTGGTAAAAGTGTTACTCCCT 60.104 40.000 3.23 0.00 0.00 4.20
5822 7516 5.237996 GTGTTGGTAAAAGTGTTACTCCCTC 59.762 44.000 3.23 0.00 0.00 4.30
5823 7517 5.131475 TGTTGGTAAAAGTGTTACTCCCTCT 59.869 40.000 3.23 0.00 0.00 3.69
5824 7518 6.327104 TGTTGGTAAAAGTGTTACTCCCTCTA 59.673 38.462 3.23 0.00 0.00 2.43
5825 7519 7.016858 TGTTGGTAAAAGTGTTACTCCCTCTAT 59.983 37.037 3.23 0.00 0.00 1.98
5826 7520 7.563724 TGGTAAAAGTGTTACTCCCTCTATT 57.436 36.000 3.23 0.00 0.00 1.73
5827 7521 7.981142 TGGTAAAAGTGTTACTCCCTCTATTT 58.019 34.615 3.23 0.00 0.00 1.40
5828 7522 8.442374 TGGTAAAAGTGTTACTCCCTCTATTTT 58.558 33.333 3.23 0.00 0.00 1.82
5829 7523 9.293404 GGTAAAAGTGTTACTCCCTCTATTTTT 57.707 33.333 3.23 0.00 0.00 1.94
5831 7525 8.762481 AAAAGTGTTACTCCCTCTATTTTTGT 57.238 30.769 0.00 0.00 0.00 2.83
5832 7526 9.856162 AAAAGTGTTACTCCCTCTATTTTTGTA 57.144 29.630 0.00 0.00 0.00 2.41
5836 7530 9.880157 GTGTTACTCCCTCTATTTTTGTATACA 57.120 33.333 0.08 0.08 0.00 2.29
5840 7534 8.159229 ACTCCCTCTATTTTTGTATACAAGGT 57.841 34.615 17.36 10.53 37.15 3.50
5841 7535 8.265764 ACTCCCTCTATTTTTGTATACAAGGTC 58.734 37.037 17.36 0.00 37.15 3.85
5842 7536 8.153221 TCCCTCTATTTTTGTATACAAGGTCA 57.847 34.615 17.36 1.16 37.15 4.02
5843 7537 8.044908 TCCCTCTATTTTTGTATACAAGGTCAC 58.955 37.037 17.36 0.00 37.15 3.67
5844 7538 8.047310 CCCTCTATTTTTGTATACAAGGTCACT 58.953 37.037 17.36 4.88 37.15 3.41
5845 7539 9.449719 CCTCTATTTTTGTATACAAGGTCACTT 57.550 33.333 17.36 4.13 37.15 3.16
5904 7598 9.733556 TGGTGTTCATAATATGGGTTATATGTC 57.266 33.333 0.00 0.00 32.30 3.06
5905 7599 9.733556 GGTGTTCATAATATGGGTTATATGTCA 57.266 33.333 0.00 0.00 32.30 3.58
5940 7634 6.455360 TCAGCAGAAAGTTCTTTGAAATGT 57.545 33.333 2.38 0.00 34.74 2.71
5941 7635 6.267817 TCAGCAGAAAGTTCTTTGAAATGTG 58.732 36.000 2.38 0.00 34.74 3.21
5949 7778 5.916318 AGTTCTTTGAAATGTGCATCCAAA 58.084 33.333 0.00 10.18 0.00 3.28
6148 7984 7.121759 ACAGTAGCTCAGCATTTGATATGTTTT 59.878 33.333 0.00 0.00 34.68 2.43
6156 7992 8.959548 TCAGCATTTGATATGTTTTGTGTCTAT 58.040 29.630 0.00 0.00 0.00 1.98
6163 7999 7.054124 TGATATGTTTTGTGTCTATTCCCTCC 58.946 38.462 0.00 0.00 0.00 4.30
6164 8000 4.715534 TGTTTTGTGTCTATTCCCTCCA 57.284 40.909 0.00 0.00 0.00 3.86
6169 8005 2.293519 TGTGTCTATTCCCTCCATCCCA 60.294 50.000 0.00 0.00 0.00 4.37
6170 8006 2.777692 GTGTCTATTCCCTCCATCCCAA 59.222 50.000 0.00 0.00 0.00 4.12
6202 8038 7.849160 AGTGTCTTAATTTTAGTACTCCCTCC 58.151 38.462 0.00 0.00 0.00 4.30
6203 8039 6.755607 GTGTCTTAATTTTAGTACTCCCTCCG 59.244 42.308 0.00 0.00 0.00 4.63
6204 8040 6.438425 TGTCTTAATTTTAGTACTCCCTCCGT 59.562 38.462 0.00 0.00 0.00 4.69
6205 8041 6.977502 GTCTTAATTTTAGTACTCCCTCCGTC 59.022 42.308 0.00 0.00 0.00 4.79
6206 8042 4.750021 AATTTTAGTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
6207 8043 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
6208 8044 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
6209 8045 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
6210 8046 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
6211 8047 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
6212 8048 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
6213 8049 1.718280 ACTCCCTCCGTCCCATAATC 58.282 55.000 0.00 0.00 0.00 1.75
6214 8050 1.220750 ACTCCCTCCGTCCCATAATCT 59.779 52.381 0.00 0.00 0.00 2.40
6215 8051 2.449730 ACTCCCTCCGTCCCATAATCTA 59.550 50.000 0.00 0.00 0.00 1.98
6216 8052 3.116862 ACTCCCTCCGTCCCATAATCTAA 60.117 47.826 0.00 0.00 0.00 2.10
6217 8053 3.507411 TCCCTCCGTCCCATAATCTAAG 58.493 50.000 0.00 0.00 0.00 2.18
6218 8054 3.141460 TCCCTCCGTCCCATAATCTAAGA 59.859 47.826 0.00 0.00 0.00 2.10
6219 8055 3.258622 CCCTCCGTCCCATAATCTAAGAC 59.741 52.174 0.00 0.00 0.00 3.01
6221 8057 3.559069 TCCGTCCCATAATCTAAGACGT 58.441 45.455 9.63 0.00 46.62 4.34
6222 8058 3.956199 TCCGTCCCATAATCTAAGACGTT 59.044 43.478 9.63 0.00 46.62 3.99
6223 8059 4.403432 TCCGTCCCATAATCTAAGACGTTT 59.597 41.667 9.63 0.00 46.62 3.60
6224 8060 5.105228 TCCGTCCCATAATCTAAGACGTTTT 60.105 40.000 9.63 0.00 46.62 2.43
6225 8061 5.583457 CCGTCCCATAATCTAAGACGTTTTT 59.417 40.000 9.63 0.00 46.62 1.94
6226 8062 6.456449 CCGTCCCATAATCTAAGACGTTTTTG 60.456 42.308 9.63 0.00 46.62 2.44
6227 8063 6.311935 CGTCCCATAATCTAAGACGTTTTTGA 59.688 38.462 5.52 5.52 43.89 2.69
6228 8064 7.148540 CGTCCCATAATCTAAGACGTTTTTGAA 60.149 37.037 7.02 0.00 43.89 2.69
6229 8065 7.961283 GTCCCATAATCTAAGACGTTTTTGAAC 59.039 37.037 7.02 0.00 0.00 3.18
6230 8066 7.662258 TCCCATAATCTAAGACGTTTTTGAACA 59.338 33.333 7.02 0.00 0.00 3.18
6231 8067 7.749126 CCCATAATCTAAGACGTTTTTGAACAC 59.251 37.037 7.02 0.00 0.00 3.32
6232 8068 8.504005 CCATAATCTAAGACGTTTTTGAACACT 58.496 33.333 7.02 0.00 0.00 3.55
6233 8069 9.318041 CATAATCTAAGACGTTTTTGAACACTG 57.682 33.333 7.02 0.86 0.00 3.66
6234 8070 5.151632 TCTAAGACGTTTTTGAACACTGC 57.848 39.130 0.00 0.00 0.00 4.40
6235 8071 3.840890 AAGACGTTTTTGAACACTGCA 57.159 38.095 0.00 0.00 0.00 4.41
6236 8072 3.405170 AGACGTTTTTGAACACTGCAG 57.595 42.857 13.48 13.48 0.00 4.41
6237 8073 2.747446 AGACGTTTTTGAACACTGCAGT 59.253 40.909 15.25 15.25 0.00 4.40
6238 8074 3.936453 AGACGTTTTTGAACACTGCAGTA 59.064 39.130 21.20 0.00 0.00 2.74
6239 8075 4.034048 AGACGTTTTTGAACACTGCAGTAG 59.966 41.667 21.20 16.11 0.00 2.57
6240 8076 3.687698 ACGTTTTTGAACACTGCAGTAGT 59.312 39.130 21.20 16.78 41.36 2.73
6269 8105 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
6270 8106 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
6271 8107 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.981647 CAAATTGTTCGGATGAAGAATCTTTTT 58.018 29.630 0.00 0.00 44.63 1.94
16 17 7.599998 CCAAATTGTTCGGATGAAGAATCTTTT 59.400 33.333 0.00 0.00 44.63 2.27
17 18 7.092716 CCAAATTGTTCGGATGAAGAATCTTT 58.907 34.615 0.00 0.00 44.63 2.52
18 19 6.209391 ACCAAATTGTTCGGATGAAGAATCTT 59.791 34.615 0.00 0.00 44.63 2.40
19 20 5.711976 ACCAAATTGTTCGGATGAAGAATCT 59.288 36.000 1.55 0.00 44.63 2.40
20 21 5.954335 ACCAAATTGTTCGGATGAAGAATC 58.046 37.500 1.55 0.00 44.63 2.52
21 22 5.982890 ACCAAATTGTTCGGATGAAGAAT 57.017 34.783 0.00 0.00 46.61 2.40
22 23 5.782893 AACCAAATTGTTCGGATGAAGAA 57.217 34.783 0.00 0.00 41.06 2.52
23 24 5.782893 AAACCAAATTGTTCGGATGAAGA 57.217 34.783 0.00 0.00 33.98 2.87
24 25 5.177327 CCAAAACCAAATTGTTCGGATGAAG 59.823 40.000 0.00 0.00 33.98 3.02
25 26 5.053145 CCAAAACCAAATTGTTCGGATGAA 58.947 37.500 0.00 0.00 0.00 2.57
26 27 4.626042 CCAAAACCAAATTGTTCGGATGA 58.374 39.130 0.00 0.00 0.00 2.92
27 28 3.186205 GCCAAAACCAAATTGTTCGGATG 59.814 43.478 0.00 0.00 0.00 3.51
28 29 3.070878 AGCCAAAACCAAATTGTTCGGAT 59.929 39.130 0.00 0.00 0.00 4.18
29 30 2.432510 AGCCAAAACCAAATTGTTCGGA 59.567 40.909 0.00 0.00 0.00 4.55
30 31 2.832563 AGCCAAAACCAAATTGTTCGG 58.167 42.857 0.00 0.00 0.00 4.30
31 32 4.616953 AGTAGCCAAAACCAAATTGTTCG 58.383 39.130 0.00 0.00 0.00 3.95
32 33 7.870445 TGAATAGTAGCCAAAACCAAATTGTTC 59.130 33.333 0.00 0.00 0.00 3.18
33 34 7.731054 TGAATAGTAGCCAAAACCAAATTGTT 58.269 30.769 0.00 0.00 0.00 2.83
34 35 7.296628 TGAATAGTAGCCAAAACCAAATTGT 57.703 32.000 0.00 0.00 0.00 2.71
35 36 7.278424 CCATGAATAGTAGCCAAAACCAAATTG 59.722 37.037 0.00 0.00 0.00 2.32
36 37 7.038373 ACCATGAATAGTAGCCAAAACCAAATT 60.038 33.333 0.00 0.00 0.00 1.82
37 38 6.440328 ACCATGAATAGTAGCCAAAACCAAAT 59.560 34.615 0.00 0.00 0.00 2.32
38 39 5.777732 ACCATGAATAGTAGCCAAAACCAAA 59.222 36.000 0.00 0.00 0.00 3.28
39 40 5.329399 ACCATGAATAGTAGCCAAAACCAA 58.671 37.500 0.00 0.00 0.00 3.67
40 41 4.929479 ACCATGAATAGTAGCCAAAACCA 58.071 39.130 0.00 0.00 0.00 3.67
41 42 5.914898 AACCATGAATAGTAGCCAAAACC 57.085 39.130 0.00 0.00 0.00 3.27
45 46 9.860650 ACAAATATAACCATGAATAGTAGCCAA 57.139 29.630 0.00 0.00 0.00 4.52
46 47 9.502091 GACAAATATAACCATGAATAGTAGCCA 57.498 33.333 0.00 0.00 0.00 4.75
47 48 9.502091 TGACAAATATAACCATGAATAGTAGCC 57.498 33.333 0.00 0.00 0.00 3.93
99 100 5.698832 CCATGCTTAAAATCTGAACGTTCA 58.301 37.500 28.07 28.07 35.57 3.18
100 101 4.558860 GCCATGCTTAAAATCTGAACGTTC 59.441 41.667 21.42 21.42 0.00 3.95
101 102 4.022416 TGCCATGCTTAAAATCTGAACGTT 60.022 37.500 0.00 0.00 0.00 3.99
102 103 3.505680 TGCCATGCTTAAAATCTGAACGT 59.494 39.130 0.00 0.00 0.00 3.99
103 104 4.095410 TGCCATGCTTAAAATCTGAACG 57.905 40.909 0.00 0.00 0.00 3.95
104 105 4.328169 GCTTGCCATGCTTAAAATCTGAAC 59.672 41.667 0.00 0.00 0.00 3.18
105 106 4.497300 GCTTGCCATGCTTAAAATCTGAA 58.503 39.130 0.00 0.00 0.00 3.02
106 107 3.119029 GGCTTGCCATGCTTAAAATCTGA 60.119 43.478 6.79 0.00 0.00 3.27
107 108 3.192466 GGCTTGCCATGCTTAAAATCTG 58.808 45.455 6.79 0.00 0.00 2.90
108 109 2.159198 CGGCTTGCCATGCTTAAAATCT 60.159 45.455 12.45 0.00 0.00 2.40
109 110 2.159254 TCGGCTTGCCATGCTTAAAATC 60.159 45.455 12.45 0.00 0.00 2.17
110 111 1.824230 TCGGCTTGCCATGCTTAAAAT 59.176 42.857 12.45 0.00 0.00 1.82
111 112 1.252175 TCGGCTTGCCATGCTTAAAA 58.748 45.000 12.45 0.00 0.00 1.52
112 113 1.067915 GTTCGGCTTGCCATGCTTAAA 60.068 47.619 12.45 0.00 0.00 1.52
113 114 0.525761 GTTCGGCTTGCCATGCTTAA 59.474 50.000 12.45 0.00 0.00 1.85
114 115 0.607762 TGTTCGGCTTGCCATGCTTA 60.608 50.000 12.45 0.00 0.00 3.09
115 116 1.252904 ATGTTCGGCTTGCCATGCTT 61.253 50.000 12.45 0.00 0.00 3.91
116 117 1.252904 AATGTTCGGCTTGCCATGCT 61.253 50.000 12.45 0.00 0.00 3.79
117 118 0.390209 AAATGTTCGGCTTGCCATGC 60.390 50.000 12.45 0.00 0.00 4.06
118 119 2.083167 AAAATGTTCGGCTTGCCATG 57.917 45.000 12.45 0.00 0.00 3.66
119 120 2.036992 TGAAAAATGTTCGGCTTGCCAT 59.963 40.909 12.45 0.00 0.00 4.40
120 121 1.410517 TGAAAAATGTTCGGCTTGCCA 59.589 42.857 12.45 0.00 0.00 4.92
121 122 2.147436 TGAAAAATGTTCGGCTTGCC 57.853 45.000 0.75 0.75 0.00 4.52
122 123 2.412770 CCATGAAAAATGTTCGGCTTGC 59.587 45.455 0.00 0.00 0.00 4.01
123 124 2.412770 GCCATGAAAAATGTTCGGCTTG 59.587 45.455 0.00 0.00 35.17 4.01
124 125 2.036992 TGCCATGAAAAATGTTCGGCTT 59.963 40.909 0.00 0.00 38.87 4.35
125 126 1.617850 TGCCATGAAAAATGTTCGGCT 59.382 42.857 0.00 0.00 38.87 5.52
126 127 2.077413 TGCCATGAAAAATGTTCGGC 57.923 45.000 0.00 0.00 38.56 5.54
127 128 3.652274 AGTTGCCATGAAAAATGTTCGG 58.348 40.909 0.00 0.00 0.00 4.30
128 129 4.744137 TGAAGTTGCCATGAAAAATGTTCG 59.256 37.500 0.00 0.00 0.00 3.95
129 130 5.754890 ACTGAAGTTGCCATGAAAAATGTTC 59.245 36.000 0.00 0.00 0.00 3.18
130 131 5.673514 ACTGAAGTTGCCATGAAAAATGTT 58.326 33.333 0.00 0.00 0.00 2.71
131 132 5.280654 ACTGAAGTTGCCATGAAAAATGT 57.719 34.783 0.00 0.00 0.00 2.71
132 133 5.754406 TGAACTGAAGTTGCCATGAAAAATG 59.246 36.000 0.00 0.00 38.56 2.32
133 134 5.754890 GTGAACTGAAGTTGCCATGAAAAAT 59.245 36.000 0.00 0.00 38.56 1.82
134 135 5.108517 GTGAACTGAAGTTGCCATGAAAAA 58.891 37.500 0.00 0.00 38.56 1.94
135 136 4.159321 TGTGAACTGAAGTTGCCATGAAAA 59.841 37.500 0.00 0.00 38.56 2.29
136 137 3.698539 TGTGAACTGAAGTTGCCATGAAA 59.301 39.130 0.00 0.00 38.56 2.69
137 138 3.066621 GTGTGAACTGAAGTTGCCATGAA 59.933 43.478 0.00 0.00 38.56 2.57
138 139 2.618241 GTGTGAACTGAAGTTGCCATGA 59.382 45.455 0.00 0.00 38.56 3.07
139 140 2.602933 CGTGTGAACTGAAGTTGCCATG 60.603 50.000 0.00 0.00 38.56 3.66
140 141 1.603802 CGTGTGAACTGAAGTTGCCAT 59.396 47.619 0.00 0.00 38.56 4.40
141 142 1.013596 CGTGTGAACTGAAGTTGCCA 58.986 50.000 0.00 0.00 38.56 4.92
142 143 1.261619 CTCGTGTGAACTGAAGTTGCC 59.738 52.381 0.00 0.00 38.56 4.52
143 144 1.261619 CCTCGTGTGAACTGAAGTTGC 59.738 52.381 0.00 0.00 38.56 4.17
144 145 2.550978 ACCTCGTGTGAACTGAAGTTG 58.449 47.619 0.00 0.00 38.56 3.16
145 146 2.936498 CAACCTCGTGTGAACTGAAGTT 59.064 45.455 0.00 0.00 41.64 2.66
146 147 2.550978 CAACCTCGTGTGAACTGAAGT 58.449 47.619 0.00 0.00 0.00 3.01
147 148 1.867233 CCAACCTCGTGTGAACTGAAG 59.133 52.381 0.00 0.00 0.00 3.02
148 149 1.483004 TCCAACCTCGTGTGAACTGAA 59.517 47.619 0.00 0.00 0.00 3.02
149 150 1.116308 TCCAACCTCGTGTGAACTGA 58.884 50.000 0.00 0.00 0.00 3.41
150 151 1.948104 TTCCAACCTCGTGTGAACTG 58.052 50.000 0.00 0.00 0.00 3.16
151 152 2.681344 GTTTTCCAACCTCGTGTGAACT 59.319 45.455 0.00 0.00 0.00 3.01
152 153 2.420722 TGTTTTCCAACCTCGTGTGAAC 59.579 45.455 0.00 0.00 31.02 3.18
153 154 2.712709 TGTTTTCCAACCTCGTGTGAA 58.287 42.857 0.00 0.00 31.02 3.18
154 155 2.404923 TGTTTTCCAACCTCGTGTGA 57.595 45.000 0.00 0.00 31.02 3.58
155 156 2.287547 CCATGTTTTCCAACCTCGTGTG 60.288 50.000 0.00 0.00 31.02 3.82
156 157 1.953686 CCATGTTTTCCAACCTCGTGT 59.046 47.619 0.00 0.00 31.02 4.49
157 158 1.335872 GCCATGTTTTCCAACCTCGTG 60.336 52.381 0.00 0.00 31.02 4.35
158 159 0.958822 GCCATGTTTTCCAACCTCGT 59.041 50.000 0.00 0.00 31.02 4.18
159 160 0.958091 TGCCATGTTTTCCAACCTCG 59.042 50.000 0.00 0.00 31.02 4.63
160 161 3.244181 ACATTGCCATGTTTTCCAACCTC 60.244 43.478 0.00 0.00 41.16 3.85
161 162 2.705127 ACATTGCCATGTTTTCCAACCT 59.295 40.909 0.00 0.00 41.16 3.50
162 163 3.124578 ACATTGCCATGTTTTCCAACC 57.875 42.857 0.00 0.00 41.16 3.77
188 189 3.603158 ACTTTGTCCCGCTTTGTTTTT 57.397 38.095 0.00 0.00 0.00 1.94
189 190 3.258228 CAACTTTGTCCCGCTTTGTTTT 58.742 40.909 0.00 0.00 0.00 2.43
190 191 2.232696 ACAACTTTGTCCCGCTTTGTTT 59.767 40.909 0.00 0.00 36.50 2.83
191 192 1.822371 ACAACTTTGTCCCGCTTTGTT 59.178 42.857 0.00 0.00 36.50 2.83
192 193 1.470051 ACAACTTTGTCCCGCTTTGT 58.530 45.000 0.00 0.00 36.50 2.83
202 203 6.255215 CGTTGTTAAGACATGACAACTTTGT 58.745 36.000 19.29 0.00 46.66 2.83
203 204 5.681105 CCGTTGTTAAGACATGACAACTTTG 59.319 40.000 19.29 8.72 46.66 2.77
204 205 5.587043 TCCGTTGTTAAGACATGACAACTTT 59.413 36.000 19.29 0.66 46.66 2.66
205 206 5.120399 TCCGTTGTTAAGACATGACAACTT 58.880 37.500 19.29 12.31 46.66 2.66
206 207 4.699637 TCCGTTGTTAAGACATGACAACT 58.300 39.130 19.29 4.03 46.66 3.16
207 208 5.412526 TTCCGTTGTTAAGACATGACAAC 57.587 39.130 14.32 14.32 45.86 3.32
208 209 6.438259 TTTTCCGTTGTTAAGACATGACAA 57.562 33.333 0.00 0.00 35.29 3.18
209 210 6.094325 ACTTTTTCCGTTGTTAAGACATGACA 59.906 34.615 0.00 0.00 35.29 3.58
210 211 6.492254 ACTTTTTCCGTTGTTAAGACATGAC 58.508 36.000 0.00 0.00 35.29 3.06
211 212 6.238538 GGACTTTTTCCGTTGTTAAGACATGA 60.239 38.462 0.00 0.00 32.80 3.07
212 213 5.912955 GGACTTTTTCCGTTGTTAAGACATG 59.087 40.000 0.00 0.00 32.80 3.21
213 214 6.068473 GGACTTTTTCCGTTGTTAAGACAT 57.932 37.500 0.00 0.00 32.80 3.06
214 215 5.488645 GGACTTTTTCCGTTGTTAAGACA 57.511 39.130 0.00 0.00 33.46 3.41
226 227 6.822442 TCAGGGTTTAAAATGGACTTTTTCC 58.178 36.000 0.00 0.00 46.13 3.13
227 228 7.985184 AGTTCAGGGTTTAAAATGGACTTTTTC 59.015 33.333 5.00 0.00 38.09 2.29
228 229 7.857456 AGTTCAGGGTTTAAAATGGACTTTTT 58.143 30.769 5.00 2.24 38.09 1.94
229 230 7.432148 AGTTCAGGGTTTAAAATGGACTTTT 57.568 32.000 5.00 0.00 40.21 2.27
230 231 6.238925 CGAGTTCAGGGTTTAAAATGGACTTT 60.239 38.462 10.18 0.00 31.56 2.66
231 232 5.240844 CGAGTTCAGGGTTTAAAATGGACTT 59.759 40.000 10.18 0.00 31.56 3.01
232 233 4.760204 CGAGTTCAGGGTTTAAAATGGACT 59.240 41.667 9.08 9.08 34.14 3.85
233 234 4.517832 ACGAGTTCAGGGTTTAAAATGGAC 59.482 41.667 0.00 0.00 0.00 4.02
234 235 4.721132 ACGAGTTCAGGGTTTAAAATGGA 58.279 39.130 0.00 0.00 0.00 3.41
235 236 5.935789 TCTACGAGTTCAGGGTTTAAAATGG 59.064 40.000 0.00 0.00 0.00 3.16
236 237 6.092259 CCTCTACGAGTTCAGGGTTTAAAATG 59.908 42.308 0.00 0.00 0.00 2.32
237 238 6.171213 CCTCTACGAGTTCAGGGTTTAAAAT 58.829 40.000 0.00 0.00 0.00 1.82
238 239 5.070847 ACCTCTACGAGTTCAGGGTTTAAAA 59.929 40.000 0.00 0.00 0.00 1.52
239 240 4.590222 ACCTCTACGAGTTCAGGGTTTAAA 59.410 41.667 0.00 0.00 0.00 1.52
240 241 4.154942 ACCTCTACGAGTTCAGGGTTTAA 58.845 43.478 0.00 0.00 0.00 1.52
241 242 3.760684 GACCTCTACGAGTTCAGGGTTTA 59.239 47.826 0.00 0.00 0.00 2.01
242 243 2.561858 GACCTCTACGAGTTCAGGGTTT 59.438 50.000 0.00 0.00 0.00 3.27
243 244 2.169330 GACCTCTACGAGTTCAGGGTT 58.831 52.381 0.00 0.00 0.00 4.11
244 245 1.836802 GACCTCTACGAGTTCAGGGT 58.163 55.000 0.00 0.00 0.00 4.34
245 246 0.733729 CGACCTCTACGAGTTCAGGG 59.266 60.000 0.00 0.00 0.00 4.45
246 247 0.733729 CCGACCTCTACGAGTTCAGG 59.266 60.000 0.00 0.00 0.00 3.86
247 248 0.733729 CCCGACCTCTACGAGTTCAG 59.266 60.000 0.00 0.00 0.00 3.02
248 249 0.037303 ACCCGACCTCTACGAGTTCA 59.963 55.000 0.00 0.00 0.00 3.18
249 250 0.450983 CACCCGACCTCTACGAGTTC 59.549 60.000 0.00 0.00 0.00 3.01
250 251 0.037303 TCACCCGACCTCTACGAGTT 59.963 55.000 0.00 0.00 0.00 3.01
251 252 0.037303 TTCACCCGACCTCTACGAGT 59.963 55.000 0.00 0.00 0.00 4.18
252 253 1.171308 TTTCACCCGACCTCTACGAG 58.829 55.000 0.00 0.00 0.00 4.18
253 254 1.619654 TTTTCACCCGACCTCTACGA 58.380 50.000 0.00 0.00 0.00 3.43
254 255 2.443887 TTTTTCACCCGACCTCTACG 57.556 50.000 0.00 0.00 0.00 3.51
279 280 9.974750 GGTTCGTGAATTTGAAAAATAAAACAA 57.025 25.926 0.00 0.00 0.00 2.83
280 281 9.372369 AGGTTCGTGAATTTGAAAAATAAAACA 57.628 25.926 0.00 0.00 0.00 2.83
287 288 9.204570 TGTAAAAAGGTTCGTGAATTTGAAAAA 57.795 25.926 0.00 0.00 0.00 1.94
288 289 8.758633 TGTAAAAAGGTTCGTGAATTTGAAAA 57.241 26.923 0.00 0.00 0.00 2.29
289 290 8.244802 TCTGTAAAAAGGTTCGTGAATTTGAAA 58.755 29.630 0.00 0.00 0.00 2.69
290 291 7.763356 TCTGTAAAAAGGTTCGTGAATTTGAA 58.237 30.769 0.00 0.00 0.00 2.69
291 292 7.323049 TCTGTAAAAAGGTTCGTGAATTTGA 57.677 32.000 0.00 0.00 0.00 2.69
292 293 7.700656 AGTTCTGTAAAAAGGTTCGTGAATTTG 59.299 33.333 0.00 0.00 0.00 2.32
293 294 7.768240 AGTTCTGTAAAAAGGTTCGTGAATTT 58.232 30.769 0.00 0.00 0.00 1.82
294 295 7.066525 TGAGTTCTGTAAAAAGGTTCGTGAATT 59.933 33.333 0.00 0.00 0.00 2.17
295 296 6.540914 TGAGTTCTGTAAAAAGGTTCGTGAAT 59.459 34.615 0.00 0.00 0.00 2.57
296 297 5.875910 TGAGTTCTGTAAAAAGGTTCGTGAA 59.124 36.000 0.00 0.00 0.00 3.18
297 298 5.421277 TGAGTTCTGTAAAAAGGTTCGTGA 58.579 37.500 0.00 0.00 0.00 4.35
298 299 5.728351 TGAGTTCTGTAAAAAGGTTCGTG 57.272 39.130 0.00 0.00 0.00 4.35
299 300 7.439381 TCTATGAGTTCTGTAAAAAGGTTCGT 58.561 34.615 0.00 0.00 0.00 3.85
300 301 7.884816 TCTATGAGTTCTGTAAAAAGGTTCG 57.115 36.000 0.00 0.00 0.00 3.95
326 327 5.751028 GTGGATTTGACACGGATTTGAAAAA 59.249 36.000 0.00 0.00 0.00 1.94
327 328 5.285651 GTGGATTTGACACGGATTTGAAAA 58.714 37.500 0.00 0.00 0.00 2.29
328 329 4.865776 GTGGATTTGACACGGATTTGAAA 58.134 39.130 0.00 0.00 0.00 2.69
329 330 4.497473 GTGGATTTGACACGGATTTGAA 57.503 40.909 0.00 0.00 0.00 2.69
338 339 2.767505 AGGAGTTCGTGGATTTGACAC 58.232 47.619 0.00 0.00 35.55 3.67
339 340 3.485463 AAGGAGTTCGTGGATTTGACA 57.515 42.857 0.00 0.00 0.00 3.58
340 341 4.274950 TGAAAAGGAGTTCGTGGATTTGAC 59.725 41.667 0.00 0.00 0.00 3.18
341 342 4.456535 TGAAAAGGAGTTCGTGGATTTGA 58.543 39.130 0.00 0.00 0.00 2.69
342 343 4.829064 TGAAAAGGAGTTCGTGGATTTG 57.171 40.909 0.00 0.00 0.00 2.32
343 344 6.405278 AATTGAAAAGGAGTTCGTGGATTT 57.595 33.333 0.00 0.00 0.00 2.17
344 345 6.405278 AAATTGAAAAGGAGTTCGTGGATT 57.595 33.333 0.00 0.00 0.00 3.01
345 346 7.703058 ATAAATTGAAAAGGAGTTCGTGGAT 57.297 32.000 0.00 0.00 0.00 3.41
346 347 8.624367 TTATAAATTGAAAAGGAGTTCGTGGA 57.376 30.769 0.00 0.00 0.00 4.02
347 348 9.855021 AATTATAAATTGAAAAGGAGTTCGTGG 57.145 29.630 0.00 0.00 0.00 4.94
368 369 9.996554 AAATTCACTTTCTTCGGGAAAAATTAT 57.003 25.926 10.34 0.00 42.52 1.28
369 370 9.825109 AAAATTCACTTTCTTCGGGAAAAATTA 57.175 25.926 10.34 0.27 42.52 1.40
370 371 8.731275 AAAATTCACTTTCTTCGGGAAAAATT 57.269 26.923 6.11 6.55 42.52 1.82
371 372 8.731275 AAAAATTCACTTTCTTCGGGAAAAAT 57.269 26.923 6.11 2.14 42.52 1.82
393 394 8.993404 AGAAAATTCAATGGATTTGGGAAAAA 57.007 26.923 0.00 0.00 35.92 1.94
394 395 8.993404 AAGAAAATTCAATGGATTTGGGAAAA 57.007 26.923 0.00 0.00 35.92 2.29
395 396 8.993404 AAAGAAAATTCAATGGATTTGGGAAA 57.007 26.923 0.00 0.00 35.92 3.13
396 397 8.848182 CAAAAGAAAATTCAATGGATTTGGGAA 58.152 29.630 0.00 0.00 35.92 3.97
397 398 8.216423 TCAAAAGAAAATTCAATGGATTTGGGA 58.784 29.630 0.00 0.00 35.92 4.37
398 399 8.393671 TCAAAAGAAAATTCAATGGATTTGGG 57.606 30.769 0.00 0.00 35.92 4.12
404 405 8.772705 CGGATTTTCAAAAGAAAATTCAATGGA 58.227 29.630 17.44 0.00 42.68 3.41
405 406 8.558700 ACGGATTTTCAAAAGAAAATTCAATGG 58.441 29.630 17.44 7.48 42.68 3.16
406 407 9.372541 CACGGATTTTCAAAAGAAAATTCAATG 57.627 29.630 17.44 12.49 42.68 2.82
407 408 9.323985 TCACGGATTTTCAAAAGAAAATTCAAT 57.676 25.926 17.44 6.42 42.68 2.57
408 409 8.709386 TCACGGATTTTCAAAAGAAAATTCAA 57.291 26.923 17.44 4.61 42.68 2.69
409 410 7.042791 GCTCACGGATTTTCAAAAGAAAATTCA 60.043 33.333 17.44 3.03 42.68 2.57
410 411 7.169813 AGCTCACGGATTTTCAAAAGAAAATTC 59.830 33.333 15.00 12.73 42.68 2.17
411 412 6.986231 AGCTCACGGATTTTCAAAAGAAAATT 59.014 30.769 15.00 0.64 42.68 1.82
412 413 6.515832 AGCTCACGGATTTTCAAAAGAAAAT 58.484 32.000 14.07 14.07 44.54 1.82
413 414 5.901552 AGCTCACGGATTTTCAAAAGAAAA 58.098 33.333 5.93 5.93 38.26 2.29
414 415 5.514274 AGCTCACGGATTTTCAAAAGAAA 57.486 34.783 0.00 0.00 0.00 2.52
415 416 5.299279 AGAAGCTCACGGATTTTCAAAAGAA 59.701 36.000 0.00 0.00 0.00 2.52
416 417 4.821805 AGAAGCTCACGGATTTTCAAAAGA 59.178 37.500 0.00 0.00 0.00 2.52
417 418 5.113502 AGAAGCTCACGGATTTTCAAAAG 57.886 39.130 0.00 0.00 0.00 2.27
418 419 5.514274 AAGAAGCTCACGGATTTTCAAAA 57.486 34.783 0.00 0.00 0.00 2.44
419 420 5.514274 AAAGAAGCTCACGGATTTTCAAA 57.486 34.783 0.00 0.00 0.00 2.69
420 421 5.067153 TGAAAAGAAGCTCACGGATTTTCAA 59.933 36.000 13.56 4.00 41.24 2.69
421 422 4.578516 TGAAAAGAAGCTCACGGATTTTCA 59.421 37.500 12.62 12.62 41.66 2.69
422 423 5.108385 TGAAAAGAAGCTCACGGATTTTC 57.892 39.130 0.00 0.00 37.23 2.29
423 424 5.514274 TTGAAAAGAAGCTCACGGATTTT 57.486 34.783 0.00 0.00 0.00 1.82
424 425 5.514274 TTTGAAAAGAAGCTCACGGATTT 57.486 34.783 0.00 0.00 0.00 2.17
425 426 5.514274 TTTTGAAAAGAAGCTCACGGATT 57.486 34.783 0.00 0.00 0.00 3.01
426 427 5.241506 TGATTTTGAAAAGAAGCTCACGGAT 59.758 36.000 0.00 0.00 0.00 4.18
427 428 4.578516 TGATTTTGAAAAGAAGCTCACGGA 59.421 37.500 0.00 0.00 0.00 4.69
428 429 4.858935 TGATTTTGAAAAGAAGCTCACGG 58.141 39.130 0.00 0.00 0.00 4.94
429 430 6.418819 ACAATGATTTTGAAAAGAAGCTCACG 59.581 34.615 0.00 0.00 0.00 4.35
430 431 7.704789 ACAATGATTTTGAAAAGAAGCTCAC 57.295 32.000 0.00 0.00 0.00 3.51
431 432 8.632679 AGTACAATGATTTTGAAAAGAAGCTCA 58.367 29.630 0.00 0.00 0.00 4.26
432 433 9.122613 GAGTACAATGATTTTGAAAAGAAGCTC 57.877 33.333 0.00 0.00 0.00 4.09
433 434 8.854117 AGAGTACAATGATTTTGAAAAGAAGCT 58.146 29.630 0.00 0.00 0.00 3.74
434 435 9.468532 AAGAGTACAATGATTTTGAAAAGAAGC 57.531 29.630 0.00 0.00 0.00 3.86
437 438 9.965824 GGAAAGAGTACAATGATTTTGAAAAGA 57.034 29.630 0.00 0.00 0.00 2.52
438 439 9.748708 TGGAAAGAGTACAATGATTTTGAAAAG 57.251 29.630 0.00 0.00 0.00 2.27
442 443 9.912634 GATTTGGAAAGAGTACAATGATTTTGA 57.087 29.630 0.00 0.00 0.00 2.69
443 444 9.918630 AGATTTGGAAAGAGTACAATGATTTTG 57.081 29.630 0.00 0.00 0.00 2.44
444 445 9.918630 CAGATTTGGAAAGAGTACAATGATTTT 57.081 29.630 0.00 0.00 0.00 1.82
445 446 9.082313 ACAGATTTGGAAAGAGTACAATGATTT 57.918 29.630 0.00 0.00 0.00 2.17
446 447 8.517878 CACAGATTTGGAAAGAGTACAATGATT 58.482 33.333 0.00 0.00 0.00 2.57
447 448 7.884877 TCACAGATTTGGAAAGAGTACAATGAT 59.115 33.333 0.00 0.00 0.00 2.45
448 449 7.223584 TCACAGATTTGGAAAGAGTACAATGA 58.776 34.615 0.00 0.00 0.00 2.57
449 450 7.439157 TCACAGATTTGGAAAGAGTACAATG 57.561 36.000 0.00 0.00 0.00 2.82
450 451 7.502226 TGTTCACAGATTTGGAAAGAGTACAAT 59.498 33.333 0.00 0.00 0.00 2.71
451 452 6.826231 TGTTCACAGATTTGGAAAGAGTACAA 59.174 34.615 0.00 0.00 0.00 2.41
452 453 6.353323 TGTTCACAGATTTGGAAAGAGTACA 58.647 36.000 0.00 0.00 0.00 2.90
453 454 6.861065 TGTTCACAGATTTGGAAAGAGTAC 57.139 37.500 0.00 0.00 0.00 2.73
454 455 8.463930 AAATGTTCACAGATTTGGAAAGAGTA 57.536 30.769 0.00 0.00 0.00 2.59
455 456 6.966534 AATGTTCACAGATTTGGAAAGAGT 57.033 33.333 0.00 0.00 0.00 3.24
456 457 8.652810 AAAAATGTTCACAGATTTGGAAAGAG 57.347 30.769 0.00 0.00 0.00 2.85
501 502 8.956426 CCATCTTAGTAGGAAATAGCAAACAAA 58.044 33.333 0.00 0.00 0.00 2.83
502 503 7.067008 GCCATCTTAGTAGGAAATAGCAAACAA 59.933 37.037 0.00 0.00 0.00 2.83
503 504 6.542370 GCCATCTTAGTAGGAAATAGCAAACA 59.458 38.462 0.00 0.00 0.00 2.83
504 505 6.017026 GGCCATCTTAGTAGGAAATAGCAAAC 60.017 42.308 0.00 0.00 0.00 2.93
505 506 6.062095 GGCCATCTTAGTAGGAAATAGCAAA 58.938 40.000 0.00 0.00 0.00 3.68
506 507 5.131977 TGGCCATCTTAGTAGGAAATAGCAA 59.868 40.000 0.00 0.00 0.00 3.91
507 508 4.658435 TGGCCATCTTAGTAGGAAATAGCA 59.342 41.667 0.00 0.00 0.00 3.49
508 509 4.998033 GTGGCCATCTTAGTAGGAAATAGC 59.002 45.833 9.72 0.00 0.00 2.97
509 510 5.552178 GGTGGCCATCTTAGTAGGAAATAG 58.448 45.833 9.72 0.00 0.00 1.73
510 511 4.039973 CGGTGGCCATCTTAGTAGGAAATA 59.960 45.833 15.59 0.00 0.00 1.40
511 512 3.181454 CGGTGGCCATCTTAGTAGGAAAT 60.181 47.826 15.59 0.00 0.00 2.17
512 513 2.169769 CGGTGGCCATCTTAGTAGGAAA 59.830 50.000 15.59 0.00 0.00 3.13
513 514 1.760613 CGGTGGCCATCTTAGTAGGAA 59.239 52.381 15.59 0.00 0.00 3.36
514 515 1.410004 CGGTGGCCATCTTAGTAGGA 58.590 55.000 15.59 0.00 0.00 2.94
515 516 0.393077 CCGGTGGCCATCTTAGTAGG 59.607 60.000 15.59 2.24 0.00 3.18
516 517 1.120530 ACCGGTGGCCATCTTAGTAG 58.879 55.000 15.59 0.00 0.00 2.57
517 518 1.575419 AACCGGTGGCCATCTTAGTA 58.425 50.000 15.59 0.00 0.00 1.82
518 519 0.696501 AAACCGGTGGCCATCTTAGT 59.303 50.000 15.59 5.87 0.00 2.24
519 520 1.834188 AAAACCGGTGGCCATCTTAG 58.166 50.000 15.59 5.16 0.00 2.18
520 521 2.296073 AAAAACCGGTGGCCATCTTA 57.704 45.000 15.59 0.00 0.00 2.10
521 522 3.141409 AAAAACCGGTGGCCATCTT 57.859 47.368 15.59 0.00 0.00 2.40
522 523 4.943373 AAAAACCGGTGGCCATCT 57.057 50.000 15.59 0.00 0.00 2.90
626 627 7.548196 GTGATCACCTCCAATATTCGTAAAA 57.452 36.000 15.31 0.00 0.00 1.52
665 666 3.006112 TGGGTTTATGCTATGCCGAAA 57.994 42.857 0.00 0.00 0.00 3.46
666 667 2.719531 TGGGTTTATGCTATGCCGAA 57.280 45.000 0.00 0.00 0.00 4.30
676 677 0.534412 TGCCGGCAAATGGGTTTATG 59.466 50.000 30.74 0.00 0.00 1.90
748 1811 5.873164 TCTTTCCGTATTTTCTTCTGGTAGC 59.127 40.000 0.00 0.00 0.00 3.58
753 1816 7.806690 TGACATTCTTTCCGTATTTTCTTCTG 58.193 34.615 0.00 0.00 0.00 3.02
755 1818 8.290325 AGTTGACATTCTTTCCGTATTTTCTTC 58.710 33.333 0.00 0.00 0.00 2.87
756 1819 8.166422 AGTTGACATTCTTTCCGTATTTTCTT 57.834 30.769 0.00 0.00 0.00 2.52
807 1876 2.435059 GTGCTCCTCCACTTCCGC 60.435 66.667 0.00 0.00 33.02 5.54
890 1960 2.355412 CGTTTTTATTCCTCTCCCCCGT 60.355 50.000 0.00 0.00 0.00 5.28
922 1993 2.041976 CCACCTGTCTGTCGAGTGT 58.958 57.895 0.00 0.00 0.00 3.55
923 1994 1.373497 GCCACCTGTCTGTCGAGTG 60.373 63.158 0.00 0.00 0.00 3.51
924 1995 2.920645 CGCCACCTGTCTGTCGAGT 61.921 63.158 0.00 0.00 0.00 4.18
925 1996 2.126307 CGCCACCTGTCTGTCGAG 60.126 66.667 0.00 0.00 0.00 4.04
926 1997 2.596338 TCGCCACCTGTCTGTCGA 60.596 61.111 0.00 0.00 0.00 4.20
931 2002 2.060980 GGGATCTCGCCACCTGTCT 61.061 63.158 0.00 0.00 0.00 3.41
966 2037 4.212913 GGCCGATCTGCTGCGAGA 62.213 66.667 9.11 0.00 0.00 4.04
1476 2555 2.172930 TGTAGCACTACCAACCAACCAA 59.827 45.455 5.40 0.00 35.26 3.67
1478 2557 2.148768 GTGTAGCACTACCAACCAACC 58.851 52.381 5.40 0.00 35.26 3.77
1479 2558 2.148768 GGTGTAGCACTACCAACCAAC 58.851 52.381 10.81 0.55 34.24 3.77
1482 2561 2.302157 AGAAGGTGTAGCACTACCAACC 59.698 50.000 5.40 7.18 39.46 3.77
1483 2562 3.258622 AGAGAAGGTGTAGCACTACCAAC 59.741 47.826 5.40 0.00 39.46 3.77
1485 2564 3.170991 AGAGAAGGTGTAGCACTACCA 57.829 47.619 5.40 0.00 39.46 3.25
1486 2565 4.246458 CAAAGAGAAGGTGTAGCACTACC 58.754 47.826 5.40 0.00 35.26 3.18
1487 2566 4.884247 ACAAAGAGAAGGTGTAGCACTAC 58.116 43.478 0.70 0.70 34.40 2.73
1488 2567 5.510861 GGAACAAAGAGAAGGTGTAGCACTA 60.511 44.000 0.00 0.00 34.40 2.74
1489 2568 4.381411 GAACAAAGAGAAGGTGTAGCACT 58.619 43.478 0.00 0.00 34.40 4.40
1490 2569 3.498777 GGAACAAAGAGAAGGTGTAGCAC 59.501 47.826 0.00 0.00 0.00 4.40
1491 2570 3.391296 AGGAACAAAGAGAAGGTGTAGCA 59.609 43.478 0.00 0.00 0.00 3.49
1492 2571 3.997681 GAGGAACAAAGAGAAGGTGTAGC 59.002 47.826 0.00 0.00 0.00 3.58
1493 2572 5.215252 TGAGGAACAAAGAGAAGGTGTAG 57.785 43.478 0.00 0.00 0.00 2.74
1649 2735 1.366111 GAGGGTATTTGAAGCGCGCA 61.366 55.000 35.10 13.06 0.00 6.09
2842 4104 5.300286 GGGCTACATATGAAGCAAAATGAGT 59.700 40.000 10.38 0.00 40.61 3.41
2903 4165 6.943718 AGCTAGTTGTAAGAACTACTCACTCT 59.056 38.462 0.00 0.00 40.25 3.24
2907 4169 5.336531 GCCAGCTAGTTGTAAGAACTACTCA 60.337 44.000 5.81 0.00 40.25 3.41
2965 4227 6.946340 TGTGTAATGTGATGTCAAGGTCTAT 58.054 36.000 0.00 0.00 0.00 1.98
3026 4289 4.509737 GGCAGGTCTACGGTCGGC 62.510 72.222 0.00 0.00 0.00 5.54
3032 4295 2.969628 AATGAAGAGGCAGGTCTACG 57.030 50.000 0.00 0.00 0.00 3.51
3045 4308 8.939929 TGCAGTCTATGTTTTCTCTAAATGAAG 58.060 33.333 0.00 0.00 0.00 3.02
3278 4608 4.330250 TGGAAGCAATGAGAAAAGGAGAG 58.670 43.478 0.00 0.00 0.00 3.20
3365 4704 3.389329 TCTCATCCTTCAGTAGATTGGGC 59.611 47.826 0.00 0.00 0.00 5.36
3509 4848 7.898014 AAAAAGCCTTTCTTTCTCCTCTTTA 57.102 32.000 0.00 0.00 43.84 1.85
3550 4889 3.887621 ATCAGCATCAGCAAAGCAAAT 57.112 38.095 0.00 0.00 45.49 2.32
3912 5279 6.146021 GGATGTTGGTAAAAGCAAATCAACAG 59.854 38.462 11.40 0.00 44.60 3.16
3940 5307 7.176285 TGAATTGCATAAGCTTGTTTTTGAC 57.824 32.000 9.86 0.00 42.74 3.18
4281 5666 4.800023 TGGTTTCGGATACCTATCTCAGA 58.200 43.478 16.85 0.00 36.60 3.27
4519 5908 8.603181 CCATTTCAGGTAAACAAAAAGAAGTTG 58.397 33.333 0.00 0.00 0.00 3.16
4535 5924 5.784906 ACCCATAACAAAATCCATTTCAGGT 59.215 36.000 0.00 0.00 0.00 4.00
4687 6076 6.958193 GTCAGCTCTTGAATTCATACGAAAAG 59.042 38.462 9.40 1.76 37.61 2.27
4693 6082 6.148480 ACACAAGTCAGCTCTTGAATTCATAC 59.852 38.462 19.08 0.00 41.81 2.39
4755 6144 8.140112 ACCCTTAATCTCATCTATTCGCTTAT 57.860 34.615 0.00 0.00 0.00 1.73
4811 6206 2.557056 CTGGTTCCGAGTACTGACTTGA 59.443 50.000 0.00 0.00 39.21 3.02
4961 6463 5.542779 CTGGTAAAGTAGATACCCATCTGC 58.457 45.833 0.60 0.00 41.75 4.26
4990 6492 4.828939 AGTCAGGAAAATTGACAGCATGAA 59.171 37.500 0.00 0.00 45.72 2.57
5606 7292 5.070714 TGGCTGACAGGTGTTTTACTAGTTA 59.929 40.000 0.00 0.00 0.00 2.24
5637 7323 2.301870 AGAAGCAGGTTATTCCGTGTCA 59.698 45.455 0.00 0.00 41.99 3.58
5660 7346 7.655328 GTCTCTTATGAATCTACCAGTTCCATG 59.345 40.741 0.00 0.00 0.00 3.66
5661 7347 7.470702 CGTCTCTTATGAATCTACCAGTTCCAT 60.471 40.741 0.00 0.00 0.00 3.41
5670 7356 5.440234 TCTGGCGTCTCTTATGAATCTAC 57.560 43.478 0.00 0.00 0.00 2.59
5679 7365 0.323451 TCTGGCTCTGGCGTCTCTTA 60.323 55.000 0.00 0.00 39.81 2.10
5681 7367 1.381056 ATCTGGCTCTGGCGTCTCT 60.381 57.895 0.00 0.00 39.81 3.10
5685 7371 4.521062 GCGATCTGGCTCTGGCGT 62.521 66.667 0.00 0.00 39.81 5.68
5686 7372 4.519437 TGCGATCTGGCTCTGGCG 62.519 66.667 0.00 0.00 39.81 5.69
5687 7373 1.525535 ATTGCGATCTGGCTCTGGC 60.526 57.895 0.00 0.00 37.82 4.85
5688 7374 0.179065 TCATTGCGATCTGGCTCTGG 60.179 55.000 0.00 0.00 0.00 3.86
5689 7375 1.660167 TTCATTGCGATCTGGCTCTG 58.340 50.000 0.00 0.00 0.00 3.35
5690 7376 2.408271 TTTCATTGCGATCTGGCTCT 57.592 45.000 0.00 0.00 0.00 4.09
5691 7377 3.705043 AATTTCATTGCGATCTGGCTC 57.295 42.857 0.00 0.00 0.00 4.70
5758 7451 5.643777 CGGCTATTATTATGCAGGCTTAGTT 59.356 40.000 0.00 0.00 0.00 2.24
5793 7487 6.174760 AGTAACACTTTTACCAACACTCACA 58.825 36.000 0.00 0.00 0.00 3.58
5810 7504 9.880157 TGTATACAAAAATAGAGGGAGTAACAC 57.120 33.333 2.20 0.00 0.00 3.32
5818 7512 8.047310 AGTGACCTTGTATACAAAAATAGAGGG 58.953 37.037 18.55 15.06 35.15 4.30
5819 7513 9.449719 AAGTGACCTTGTATACAAAAATAGAGG 57.550 33.333 18.55 15.83 35.15 3.69
5878 7572 9.733556 GACATATAACCCATATTATGAACACCA 57.266 33.333 5.21 0.00 0.00 4.17
5879 7573 9.733556 TGACATATAACCCATATTATGAACACC 57.266 33.333 5.21 0.00 0.00 4.16
5914 7608 8.800332 ACATTTCAAAGAACTTTCTGCTGATAT 58.200 29.630 0.00 4.31 37.65 1.63
5915 7609 8.077991 CACATTTCAAAGAACTTTCTGCTGATA 58.922 33.333 0.00 2.66 37.65 2.15
5916 7610 6.921857 CACATTTCAAAGAACTTTCTGCTGAT 59.078 34.615 0.00 0.00 37.65 2.90
5917 7611 6.267817 CACATTTCAAAGAACTTTCTGCTGA 58.732 36.000 0.00 0.00 37.65 4.26
5918 7612 5.051240 GCACATTTCAAAGAACTTTCTGCTG 60.051 40.000 0.00 0.00 37.65 4.41
5919 7613 5.045872 GCACATTTCAAAGAACTTTCTGCT 58.954 37.500 0.00 0.00 37.65 4.24
5920 7614 4.805192 TGCACATTTCAAAGAACTTTCTGC 59.195 37.500 0.00 0.00 37.65 4.26
5921 7615 6.145048 GGATGCACATTTCAAAGAACTTTCTG 59.855 38.462 0.00 0.00 37.65 3.02
5922 7616 6.183360 TGGATGCACATTTCAAAGAACTTTCT 60.183 34.615 0.00 0.00 39.74 2.52
5923 7617 5.984926 TGGATGCACATTTCAAAGAACTTTC 59.015 36.000 0.00 0.00 0.00 2.62
5924 7618 5.916318 TGGATGCACATTTCAAAGAACTTT 58.084 33.333 0.00 0.00 0.00 2.66
5925 7619 5.534207 TGGATGCACATTTCAAAGAACTT 57.466 34.783 0.00 0.00 0.00 2.66
5926 7620 5.534207 TTGGATGCACATTTCAAAGAACT 57.466 34.783 0.00 0.00 0.00 3.01
5927 7621 5.984926 TCTTTGGATGCACATTTCAAAGAAC 59.015 36.000 24.53 0.00 41.93 3.01
5928 7622 5.984926 GTCTTTGGATGCACATTTCAAAGAA 59.015 36.000 26.37 16.78 43.76 2.52
5929 7623 5.068855 TGTCTTTGGATGCACATTTCAAAGA 59.931 36.000 23.76 23.76 42.23 2.52
5930 7624 5.291178 TGTCTTTGGATGCACATTTCAAAG 58.709 37.500 21.48 21.48 40.08 2.77
5931 7625 5.273674 TGTCTTTGGATGCACATTTCAAA 57.726 34.783 0.00 10.50 0.00 2.69
5932 7626 4.933505 TGTCTTTGGATGCACATTTCAA 57.066 36.364 0.00 0.00 0.00 2.69
5933 7627 5.711506 AGTATGTCTTTGGATGCACATTTCA 59.288 36.000 0.00 0.00 31.83 2.69
5934 7628 6.199937 AGTATGTCTTTGGATGCACATTTC 57.800 37.500 0.00 0.00 31.83 2.17
5935 7629 6.594788 AAGTATGTCTTTGGATGCACATTT 57.405 33.333 0.00 0.00 31.57 2.32
5936 7630 6.594788 AAAGTATGTCTTTGGATGCACATT 57.405 33.333 0.00 0.00 43.72 2.71
5937 7631 6.594788 AAAAGTATGTCTTTGGATGCACAT 57.405 33.333 0.00 0.00 44.50 3.21
5938 7632 6.183360 ACAAAAAGTATGTCTTTGGATGCACA 60.183 34.615 0.00 0.00 44.50 4.57
5939 7633 6.144402 CACAAAAAGTATGTCTTTGGATGCAC 59.856 38.462 0.00 0.00 44.50 4.57
5940 7634 6.215121 CACAAAAAGTATGTCTTTGGATGCA 58.785 36.000 0.00 0.00 44.50 3.96
5941 7635 5.634859 CCACAAAAAGTATGTCTTTGGATGC 59.365 40.000 0.00 0.00 44.50 3.91
5949 7778 5.106157 GCTATGTGCCACAAAAAGTATGTCT 60.106 40.000 0.00 0.00 35.15 3.41
6023 7852 6.485313 CCTCTGTTTTTGTATACAAGACCACA 59.515 38.462 17.36 13.81 37.15 4.17
6042 7871 5.568620 ACAAATTTCAGTACTCCCTCTGT 57.431 39.130 0.00 0.00 33.89 3.41
6043 7872 5.582665 GCTACAAATTTCAGTACTCCCTCTG 59.417 44.000 0.00 0.00 0.00 3.35
6148 7984 2.293519 TGGGATGGAGGGAATAGACACA 60.294 50.000 0.00 0.00 0.00 3.72
6187 8023 2.225343 TGGGACGGAGGGAGTACTAAAA 60.225 50.000 0.00 0.00 0.00 1.52
6188 8024 1.358787 TGGGACGGAGGGAGTACTAAA 59.641 52.381 0.00 0.00 0.00 1.85
6196 8032 3.141460 TCTTAGATTATGGGACGGAGGGA 59.859 47.826 0.00 0.00 0.00 4.20
6197 8033 3.258622 GTCTTAGATTATGGGACGGAGGG 59.741 52.174 0.00 0.00 0.00 4.30
6198 8034 3.057456 CGTCTTAGATTATGGGACGGAGG 60.057 52.174 0.00 0.00 43.69 4.30
6199 8035 4.162096 CGTCTTAGATTATGGGACGGAG 57.838 50.000 0.00 0.00 43.69 4.63
6203 8039 7.605410 TCAAAAACGTCTTAGATTATGGGAC 57.395 36.000 0.00 0.00 0.00 4.46
6204 8040 7.662258 TGTTCAAAAACGTCTTAGATTATGGGA 59.338 33.333 0.00 0.00 38.28 4.37
6205 8041 7.749126 GTGTTCAAAAACGTCTTAGATTATGGG 59.251 37.037 0.00 0.00 38.28 4.00
6206 8042 8.504005 AGTGTTCAAAAACGTCTTAGATTATGG 58.496 33.333 0.00 0.00 38.28 2.74
6207 8043 9.318041 CAGTGTTCAAAAACGTCTTAGATTATG 57.682 33.333 0.00 0.00 38.28 1.90
6208 8044 8.015658 GCAGTGTTCAAAAACGTCTTAGATTAT 58.984 33.333 0.00 0.00 38.28 1.28
6209 8045 7.011576 TGCAGTGTTCAAAAACGTCTTAGATTA 59.988 33.333 0.00 0.00 38.28 1.75
6210 8046 6.183360 TGCAGTGTTCAAAAACGTCTTAGATT 60.183 34.615 0.00 0.00 38.28 2.40
6211 8047 5.295787 TGCAGTGTTCAAAAACGTCTTAGAT 59.704 36.000 0.00 0.00 38.28 1.98
6212 8048 4.632251 TGCAGTGTTCAAAAACGTCTTAGA 59.368 37.500 0.00 0.00 38.28 2.10
6213 8049 4.904116 TGCAGTGTTCAAAAACGTCTTAG 58.096 39.130 0.00 0.00 38.28 2.18
6214 8050 4.393680 ACTGCAGTGTTCAAAAACGTCTTA 59.606 37.500 20.97 0.00 38.28 2.10
6215 8051 3.190535 ACTGCAGTGTTCAAAAACGTCTT 59.809 39.130 20.97 0.00 38.28 3.01
6216 8052 2.747446 ACTGCAGTGTTCAAAAACGTCT 59.253 40.909 20.97 0.00 38.28 4.18
6217 8053 3.131240 ACTGCAGTGTTCAAAAACGTC 57.869 42.857 20.97 0.00 38.28 4.34
6218 8054 3.687698 ACTACTGCAGTGTTCAAAAACGT 59.312 39.130 29.57 7.34 38.28 3.99
6219 8055 4.273005 ACTACTGCAGTGTTCAAAAACG 57.727 40.909 29.57 6.77 38.28 3.60
6245 8081 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
6246 8082 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
6247 8083 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
6248 8084 5.130477 ACTCCGTCCCATAATGTAAGATGTT 59.870 40.000 0.00 0.00 0.00 2.71
6249 8085 4.654262 ACTCCGTCCCATAATGTAAGATGT 59.346 41.667 0.00 0.00 0.00 3.06
6250 8086 5.215252 ACTCCGTCCCATAATGTAAGATG 57.785 43.478 0.00 0.00 0.00 2.90
6251 8087 6.075984 ACTACTCCGTCCCATAATGTAAGAT 58.924 40.000 0.00 0.00 0.00 2.40
6252 8088 5.452255 ACTACTCCGTCCCATAATGTAAGA 58.548 41.667 0.00 0.00 0.00 2.10
6253 8089 5.786264 ACTACTCCGTCCCATAATGTAAG 57.214 43.478 0.00 0.00 0.00 2.34
6254 8090 6.128486 TGTACTACTCCGTCCCATAATGTAA 58.872 40.000 0.00 0.00 0.00 2.41
6255 8091 5.693961 TGTACTACTCCGTCCCATAATGTA 58.306 41.667 0.00 0.00 0.00 2.29
6256 8092 4.539726 TGTACTACTCCGTCCCATAATGT 58.460 43.478 0.00 0.00 0.00 2.71
6257 8093 5.068723 AGTTGTACTACTCCGTCCCATAATG 59.931 44.000 3.98 0.00 0.00 1.90
6258 8094 5.206587 AGTTGTACTACTCCGTCCCATAAT 58.793 41.667 3.98 0.00 0.00 1.28
6259 8095 4.603131 AGTTGTACTACTCCGTCCCATAA 58.397 43.478 3.98 0.00 0.00 1.90
6260 8096 4.240881 AGTTGTACTACTCCGTCCCATA 57.759 45.455 3.98 0.00 0.00 2.74
6261 8097 3.097342 AGTTGTACTACTCCGTCCCAT 57.903 47.619 3.98 0.00 0.00 4.00
6262 8098 2.592102 AGTTGTACTACTCCGTCCCA 57.408 50.000 3.98 0.00 0.00 4.37
6263 8099 3.949842 AAAGTTGTACTACTCCGTCCC 57.050 47.619 10.44 0.00 0.00 4.46
6264 8100 7.326968 AGTATAAAGTTGTACTACTCCGTCC 57.673 40.000 10.44 0.42 34.01 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.