Multiple sequence alignment - TraesCS7D01G197300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G197300 chr7D 100.000 3101 0 0 1 3101 153774960 153771860 0.000000e+00 5727
1 TraesCS7D01G197300 chr7B 93.407 1987 71 22 837 2789 115561270 115559310 0.000000e+00 2889
2 TraesCS7D01G197300 chr7B 93.023 473 29 2 1 472 115562224 115561755 0.000000e+00 688
3 TraesCS7D01G197300 chr7B 95.364 302 12 2 479 780 115561701 115561402 2.160000e-131 479
4 TraesCS7D01G197300 chr7B 93.204 309 17 4 2796 3101 131090425 131090118 4.720000e-123 451
5 TraesCS7D01G197300 chr7A 90.692 2009 96 31 839 2785 155646834 155644855 0.000000e+00 2590
6 TraesCS7D01G197300 chr7A 92.085 796 36 8 1 770 155647773 155646979 0.000000e+00 1096
7 TraesCS7D01G197300 chr6A 79.638 884 146 20 1139 1993 546596371 546597249 3.420000e-169 604
8 TraesCS7D01G197300 chr4B 93.291 313 16 3 2792 3101 174042028 174041718 1.010000e-124 457
9 TraesCS7D01G197300 chr4B 92.926 311 18 3 2794 3101 629957338 629957647 1.700000e-122 449
10 TraesCS7D01G197300 chr1B 93.248 311 17 3 2794 3101 636663116 636662807 3.650000e-124 455
11 TraesCS7D01G197300 chr1B 92.926 311 18 3 2794 3101 269218855 269218546 1.700000e-122 449
12 TraesCS7D01G197300 chr1B 92.926 311 18 3 2794 3101 644278248 644278557 1.700000e-122 449
13 TraesCS7D01G197300 chr3B 93.226 310 17 3 2795 3101 416273280 416272972 1.310000e-123 453
14 TraesCS7D01G197300 chr6B 93.709 302 15 3 2803 3101 195275107 195274807 1.700000e-122 449
15 TraesCS7D01G197300 chr5B 92.926 311 18 3 2794 3101 699778959 699778650 1.700000e-122 449


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G197300 chr7D 153771860 153774960 3100 True 5727 5727 100.000000 1 3101 1 chr7D.!!$R1 3100
1 TraesCS7D01G197300 chr7B 115559310 115562224 2914 True 1352 2889 93.931333 1 2789 3 chr7B.!!$R2 2788
2 TraesCS7D01G197300 chr7A 155644855 155647773 2918 True 1843 2590 91.388500 1 2785 2 chr7A.!!$R1 2784
3 TraesCS7D01G197300 chr6A 546596371 546597249 878 False 604 604 79.638000 1139 1993 1 chr6A.!!$F1 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 765 0.038744 ACATCCTTCCACCAGCTTGG 59.961 55.0 0.0 0.0 45.02 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 2628 0.171007 CGTCCAAATGCCACATCCAC 59.829 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.457366 AGGAACGCACTACTCCAAAG 57.543 50.000 0.00 0.00 0.00 2.77
61 62 3.135994 GGAACGCACTACTCCAAAGAAA 58.864 45.455 0.00 0.00 0.00 2.52
220 226 4.635765 GCATGCTGACTTTATGGTAGACAA 59.364 41.667 11.37 0.00 0.00 3.18
249 255 4.220693 TCAAAAGATGATCCGTGGATGT 57.779 40.909 6.03 0.00 34.60 3.06
271 277 0.926293 TCCCTCCAAATGGACATCCC 59.074 55.000 0.00 0.00 39.78 3.85
293 299 2.663602 CTGGAAGACGACGATTGTTCTG 59.336 50.000 0.00 0.00 34.07 3.02
317 323 7.577303 TGGAAGCATGAAAGGATTAATCTACT 58.423 34.615 14.95 2.14 0.00 2.57
352 358 4.520492 AGGTATTTGTTGTCTGCAAGGAAG 59.480 41.667 0.00 0.00 34.94 3.46
385 392 7.905604 TCACTCCATGTATCTGTAACAAAAG 57.094 36.000 0.00 0.00 0.00 2.27
477 484 8.768955 GCATTTCTTATGTAGAACAGATACAGG 58.231 37.037 0.00 0.00 42.50 4.00
556 609 1.197721 GTCCTTGTCACGCTTGAATGG 59.802 52.381 0.00 0.00 31.90 3.16
589 642 6.587651 GTTGGTTTCTTGCTACGTAGTTAAG 58.412 40.000 22.98 23.58 37.78 1.85
712 765 0.038744 ACATCCTTCCACCAGCTTGG 59.961 55.000 0.00 0.00 45.02 3.61
770 823 1.363246 AACTTCTCCCCTCCAACCTC 58.637 55.000 0.00 0.00 0.00 3.85
777 833 2.757077 CCTCCAACCTCCCCACAC 59.243 66.667 0.00 0.00 0.00 3.82
780 836 2.129555 CTCCAACCTCCCCACACAGG 62.130 65.000 0.00 0.00 35.69 4.00
782 838 1.073199 CAACCTCCCCACACAGGAC 59.927 63.158 0.00 0.00 41.22 3.85
783 839 2.154074 AACCTCCCCACACAGGACC 61.154 63.158 0.00 0.00 41.22 4.46
785 841 1.080354 CCTCCCCACACAGGACCTA 59.920 63.158 0.00 0.00 41.22 3.08
786 842 0.326618 CCTCCCCACACAGGACCTAT 60.327 60.000 0.00 0.00 41.22 2.57
787 843 1.584724 CTCCCCACACAGGACCTATT 58.415 55.000 0.00 0.00 41.22 1.73
788 844 2.628559 CCTCCCCACACAGGACCTATTA 60.629 54.545 0.00 0.00 41.22 0.98
789 845 3.318313 CTCCCCACACAGGACCTATTAT 58.682 50.000 0.00 0.00 41.22 1.28
790 846 3.716872 CTCCCCACACAGGACCTATTATT 59.283 47.826 0.00 0.00 41.22 1.40
791 847 4.898268 TCCCCACACAGGACCTATTATTA 58.102 43.478 0.00 0.00 41.22 0.98
793 849 4.502604 CCCCACACAGGACCTATTATTACG 60.503 50.000 0.00 0.00 41.22 3.18
794 850 4.100498 CCCACACAGGACCTATTATTACGT 59.900 45.833 0.00 0.00 41.22 3.57
795 851 5.302568 CCCACACAGGACCTATTATTACGTA 59.697 44.000 0.00 0.00 41.22 3.57
796 852 6.444633 CCACACAGGACCTATTATTACGTAG 58.555 44.000 0.00 0.00 41.22 3.51
797 853 6.444633 CACACAGGACCTATTATTACGTAGG 58.555 44.000 0.00 0.00 42.56 3.18
805 861 7.771927 ACCTATTATTACGTAGGTGTAGCAT 57.228 36.000 4.65 0.00 46.75 3.79
806 862 8.186709 ACCTATTATTACGTAGGTGTAGCATT 57.813 34.615 4.65 0.00 46.75 3.56
807 863 8.086522 ACCTATTATTACGTAGGTGTAGCATTG 58.913 37.037 4.65 0.00 46.75 2.82
809 865 3.880047 TTACGTAGGTGTAGCATTGCT 57.120 42.857 16.63 16.63 43.41 3.91
810 866 2.295253 ACGTAGGTGTAGCATTGCTC 57.705 50.000 15.81 7.72 40.44 4.26
811 867 1.134788 ACGTAGGTGTAGCATTGCTCC 60.135 52.381 15.81 10.58 40.44 4.70
813 869 2.555199 GTAGGTGTAGCATTGCTCCAG 58.445 52.381 15.81 0.00 40.44 3.86
814 870 0.254178 AGGTGTAGCATTGCTCCAGG 59.746 55.000 15.81 0.00 40.44 4.45
816 872 1.340017 GGTGTAGCATTGCTCCAGGAA 60.340 52.381 15.81 0.00 40.44 3.36
817 873 1.740025 GTGTAGCATTGCTCCAGGAAC 59.260 52.381 15.81 7.23 40.44 3.62
818 874 1.350684 TGTAGCATTGCTCCAGGAACA 59.649 47.619 15.81 9.95 40.44 3.18
819 875 2.012673 GTAGCATTGCTCCAGGAACAG 58.987 52.381 15.81 0.00 40.44 3.16
820 876 0.323178 AGCATTGCTCCAGGAACAGG 60.323 55.000 5.03 0.00 30.62 4.00
821 877 0.610232 GCATTGCTCCAGGAACAGGT 60.610 55.000 0.16 0.00 35.97 4.00
822 878 1.457346 CATTGCTCCAGGAACAGGTC 58.543 55.000 0.00 0.00 35.97 3.85
823 879 1.067295 ATTGCTCCAGGAACAGGTCA 58.933 50.000 0.00 0.00 35.97 4.02
825 881 1.003233 GCTCCAGGAACAGGTCACC 60.003 63.158 0.00 0.00 35.97 4.02
827 883 0.987294 CTCCAGGAACAGGTCACCAT 59.013 55.000 0.00 0.00 35.97 3.55
828 884 0.692476 TCCAGGAACAGGTCACCATG 59.308 55.000 0.00 0.00 35.97 3.66
829 885 0.962356 CCAGGAACAGGTCACCATGC 60.962 60.000 0.00 0.00 0.00 4.06
830 886 1.003355 AGGAACAGGTCACCATGCG 60.003 57.895 0.00 0.00 0.00 4.73
831 887 2.040544 GGAACAGGTCACCATGCGG 61.041 63.158 0.00 0.00 38.77 5.69
832 888 2.672996 AACAGGTCACCATGCGGC 60.673 61.111 0.00 0.00 34.57 6.53
833 889 3.490031 AACAGGTCACCATGCGGCA 62.490 57.895 4.58 4.58 34.57 5.69
835 891 3.321648 AGGTCACCATGCGGCAGA 61.322 61.111 9.25 0.00 34.57 4.26
896 1035 3.385384 GGCTGCTTTCCCTTGCCC 61.385 66.667 0.00 0.00 37.81 5.36
897 1044 2.283460 GCTGCTTTCCCTTGCCCT 60.283 61.111 0.00 0.00 0.00 5.19
947 1094 3.869832 GACTCGTCAAGCTTTATAACCCC 59.130 47.826 0.00 0.00 0.00 4.95
979 1127 4.166725 TGTTTCCTAGCCTCATTCATCCAT 59.833 41.667 0.00 0.00 0.00 3.41
993 1141 0.250640 ATCCATCCATCTTGCCGAGC 60.251 55.000 0.00 0.00 0.00 5.03
1037 1191 2.520741 CTCCCCTCTCCTCGCTCC 60.521 72.222 0.00 0.00 0.00 4.70
1083 1237 2.476051 GTGTTGATGTCTGCGCCG 59.524 61.111 4.18 0.00 0.00 6.46
1557 1735 3.730761 GCCACGCTGAGCAAGGTG 61.731 66.667 4.88 4.53 0.00 4.00
1563 1741 2.970974 GCTGAGCAAGGTGTTCGCC 61.971 63.158 0.00 0.00 29.60 5.54
1608 1786 1.507141 CCACCACGCTCAACTTCACC 61.507 60.000 0.00 0.00 0.00 4.02
1824 2002 4.083862 GACCTGGAGTCGGTGGCC 62.084 72.222 0.00 0.00 35.30 5.36
1929 2107 1.228552 GAAGGTGGAGCTGGCCAAA 60.229 57.895 7.01 0.00 40.20 3.28
2106 2296 1.727335 GCCTTGTCGTGCTAGTTCTTC 59.273 52.381 0.00 0.00 0.00 2.87
2107 2297 2.610727 GCCTTGTCGTGCTAGTTCTTCT 60.611 50.000 0.00 0.00 0.00 2.85
2108 2298 3.654414 CCTTGTCGTGCTAGTTCTTCTT 58.346 45.455 0.00 0.00 0.00 2.52
2109 2299 3.430218 CCTTGTCGTGCTAGTTCTTCTTG 59.570 47.826 0.00 0.00 0.00 3.02
2110 2300 2.404215 TGTCGTGCTAGTTCTTCTTGC 58.596 47.619 0.00 0.00 43.25 4.01
2177 2382 6.204882 ACTTTGCTCTAGGATTTGTGTTGTAC 59.795 38.462 0.00 0.00 0.00 2.90
2328 2560 3.243035 CCATTGTGAGTTGTCGCTTTTCA 60.243 43.478 0.00 0.00 34.00 2.69
2381 2626 2.144859 GATTTGTCCCGGGGGTTCCA 62.145 60.000 23.50 7.14 36.47 3.53
2382 2627 1.514864 ATTTGTCCCGGGGGTTCCAT 61.515 55.000 23.50 2.61 36.47 3.41
2383 2628 2.433646 TTTGTCCCGGGGGTTCCATG 62.434 60.000 23.50 0.00 36.47 3.66
2384 2629 3.335729 GTCCCGGGGGTTCCATGT 61.336 66.667 23.50 0.00 36.47 3.21
2385 2630 3.334891 TCCCGGGGGTTCCATGTG 61.335 66.667 23.50 0.00 36.47 3.21
2386 2631 4.440829 CCCGGGGGTTCCATGTGG 62.441 72.222 14.71 0.00 34.36 4.17
2406 2651 0.971959 ATGTGGCATTTGGACGGCAT 60.972 50.000 0.00 0.00 40.11 4.40
2451 2696 0.030235 TAGGTTCACGGCATCGATCG 59.970 55.000 9.36 9.36 40.11 3.69
2455 2700 0.668535 TTCACGGCATCGATCGAGAT 59.331 50.000 23.84 4.47 40.11 2.75
2533 2788 1.808945 GTGCCACTCATCAGAACCAAG 59.191 52.381 0.00 0.00 0.00 3.61
2579 2834 4.578928 ACACAGGAACAGAAAATGTGGTAC 59.421 41.667 8.33 0.00 43.00 3.34
2580 2835 4.578516 CACAGGAACAGAAAATGTGGTACA 59.421 41.667 0.00 0.00 43.00 2.90
2581 2836 4.821805 ACAGGAACAGAAAATGTGGTACAG 59.178 41.667 0.00 0.00 43.00 2.74
2582 2837 4.821805 CAGGAACAGAAAATGTGGTACAGT 59.178 41.667 0.00 0.00 43.00 3.55
2583 2838 5.995282 CAGGAACAGAAAATGTGGTACAGTA 59.005 40.000 0.00 0.00 43.00 2.74
2642 2897 7.219484 ACATGATTTGTAGACCCAAGAAAAG 57.781 36.000 0.00 0.00 36.57 2.27
2643 2898 6.777580 ACATGATTTGTAGACCCAAGAAAAGT 59.222 34.615 0.00 0.00 36.57 2.66
2666 2921 6.071560 AGTGATGTCTCATTACCTCGTGTTTA 60.072 38.462 1.98 0.00 32.98 2.01
2669 2924 5.706916 TGTCTCATTACCTCGTGTTTAGTC 58.293 41.667 0.00 0.00 0.00 2.59
2671 2926 5.800941 GTCTCATTACCTCGTGTTTAGTCTG 59.199 44.000 0.00 0.00 0.00 3.51
2679 2934 4.272504 CCTCGTGTTTAGTCTGCTTCAAAA 59.727 41.667 0.00 0.00 0.00 2.44
2702 2958 9.802039 AAAATTTCTATGGAATAATAGCCCGTA 57.198 29.630 0.00 0.00 31.33 4.02
2789 3046 6.451292 TCTCTATAGAGTAATCCCTCCGTT 57.549 41.667 25.54 0.00 42.60 4.44
2790 3047 6.850234 TCTCTATAGAGTAATCCCTCCGTTT 58.150 40.000 25.54 0.00 42.60 3.60
2791 3048 6.715718 TCTCTATAGAGTAATCCCTCCGTTTG 59.284 42.308 25.54 0.00 42.60 2.93
2792 3049 6.371278 TCTATAGAGTAATCCCTCCGTTTGT 58.629 40.000 0.00 0.00 31.53 2.83
2793 3050 3.889520 AGAGTAATCCCTCCGTTTGTC 57.110 47.619 0.00 0.00 31.53 3.18
2794 3051 2.165845 AGAGTAATCCCTCCGTTTGTCG 59.834 50.000 0.00 0.00 39.52 4.35
2816 3073 4.554363 CGACGCAGGTCCGCCTAG 62.554 72.222 0.95 0.00 44.97 3.02
2817 3074 3.450115 GACGCAGGTCCGCCTAGT 61.450 66.667 0.95 0.00 44.97 2.57
2818 3075 2.995574 ACGCAGGTCCGCCTAGTT 60.996 61.111 0.95 0.00 44.97 2.24
2819 3076 2.264794 CGCAGGTCCGCCTAGTTT 59.735 61.111 0.95 0.00 44.97 2.66
2820 3077 1.810030 CGCAGGTCCGCCTAGTTTC 60.810 63.158 0.95 0.00 44.97 2.78
2821 3078 1.449778 GCAGGTCCGCCTAGTTTCC 60.450 63.158 0.00 0.00 44.97 3.13
2822 3079 1.153628 CAGGTCCGCCTAGTTTCCG 60.154 63.158 0.00 0.00 44.97 4.30
2823 3080 2.186125 GGTCCGCCTAGTTTCCGG 59.814 66.667 0.00 0.00 43.21 5.14
2824 3081 2.653087 GGTCCGCCTAGTTTCCGGT 61.653 63.158 0.00 0.00 42.48 5.28
2825 3082 1.447314 GTCCGCCTAGTTTCCGGTG 60.447 63.158 0.00 0.00 42.48 4.94
2826 3083 2.125269 CCGCCTAGTTTCCGGTGG 60.125 66.667 0.00 0.00 43.85 4.61
2827 3084 2.818274 CGCCTAGTTTCCGGTGGC 60.818 66.667 0.00 6.33 40.14 5.01
2828 3085 2.669240 GCCTAGTTTCCGGTGGCT 59.331 61.111 0.00 0.11 40.36 4.75
2829 3086 1.449778 GCCTAGTTTCCGGTGGCTC 60.450 63.158 0.00 0.00 40.36 4.70
2830 3087 1.900545 GCCTAGTTTCCGGTGGCTCT 61.901 60.000 0.00 0.00 40.36 4.09
2831 3088 1.481871 CCTAGTTTCCGGTGGCTCTA 58.518 55.000 0.00 0.00 0.00 2.43
2832 3089 1.409427 CCTAGTTTCCGGTGGCTCTAG 59.591 57.143 0.00 7.94 0.00 2.43
2833 3090 1.409427 CTAGTTTCCGGTGGCTCTAGG 59.591 57.143 0.00 0.00 0.00 3.02
2834 3091 1.221021 GTTTCCGGTGGCTCTAGGG 59.779 63.158 0.00 0.00 0.00 3.53
2835 3092 2.666098 TTTCCGGTGGCTCTAGGGC 61.666 63.158 5.86 5.86 41.27 5.19
2843 3100 3.155750 GCTCTAGGGCCATGGAGG 58.844 66.667 28.88 13.15 41.84 4.30
2853 3110 4.552365 CATGGAGGCGCGGTGGAT 62.552 66.667 8.83 0.00 0.00 3.41
2854 3111 4.241555 ATGGAGGCGCGGTGGATC 62.242 66.667 8.83 0.00 0.00 3.36
2857 3114 4.899239 GAGGCGCGGTGGATCCTG 62.899 72.222 14.23 4.04 0.00 3.86
2861 3118 4.776322 CGCGGTGGATCCTGGCAA 62.776 66.667 14.23 0.00 0.00 4.52
2862 3119 2.825836 GCGGTGGATCCTGGCAAG 60.826 66.667 14.23 0.00 0.00 4.01
2863 3120 2.124570 CGGTGGATCCTGGCAAGG 60.125 66.667 14.23 0.00 46.06 3.61
2864 3121 2.276740 GGTGGATCCTGGCAAGGG 59.723 66.667 14.23 0.00 44.62 3.95
2865 3122 2.440980 GTGGATCCTGGCAAGGGC 60.441 66.667 14.23 0.00 44.62 5.19
2889 3146 2.593128 GGAGGGCTCCGTTTCTAGT 58.407 57.895 0.00 0.00 40.36 2.57
2890 3147 0.903236 GGAGGGCTCCGTTTCTAGTT 59.097 55.000 0.00 0.00 40.36 2.24
2891 3148 1.278413 GGAGGGCTCCGTTTCTAGTTT 59.722 52.381 0.00 0.00 40.36 2.66
2892 3149 2.290134 GGAGGGCTCCGTTTCTAGTTTT 60.290 50.000 0.00 0.00 40.36 2.43
2893 3150 3.409570 GAGGGCTCCGTTTCTAGTTTTT 58.590 45.455 0.00 0.00 0.00 1.94
2920 3177 6.783708 TTTCAATCTTGTTAGGGTTTGTGT 57.216 33.333 0.00 0.00 0.00 3.72
2921 3178 6.385649 TTCAATCTTGTTAGGGTTTGTGTC 57.614 37.500 0.00 0.00 0.00 3.67
2922 3179 4.825085 TCAATCTTGTTAGGGTTTGTGTCC 59.175 41.667 0.00 0.00 0.00 4.02
2923 3180 4.724279 ATCTTGTTAGGGTTTGTGTCCT 57.276 40.909 0.00 0.00 37.18 3.85
2924 3181 3.815809 TCTTGTTAGGGTTTGTGTCCTG 58.184 45.455 0.00 0.00 34.75 3.86
2925 3182 3.201266 TCTTGTTAGGGTTTGTGTCCTGT 59.799 43.478 0.00 0.00 34.75 4.00
2926 3183 3.655615 TGTTAGGGTTTGTGTCCTGTT 57.344 42.857 0.00 0.00 34.75 3.16
2927 3184 3.547746 TGTTAGGGTTTGTGTCCTGTTC 58.452 45.455 0.00 0.00 34.75 3.18
2928 3185 3.054287 TGTTAGGGTTTGTGTCCTGTTCA 60.054 43.478 0.00 0.00 34.75 3.18
2929 3186 2.348411 AGGGTTTGTGTCCTGTTCAG 57.652 50.000 0.00 0.00 31.11 3.02
2930 3187 1.133792 AGGGTTTGTGTCCTGTTCAGG 60.134 52.381 12.20 12.20 31.11 3.86
2931 3188 1.133915 GGGTTTGTGTCCTGTTCAGGA 60.134 52.381 16.47 16.47 35.23 3.86
2932 3189 2.650322 GGTTTGTGTCCTGTTCAGGAA 58.350 47.619 21.13 10.36 40.06 3.36
2933 3190 2.618709 GGTTTGTGTCCTGTTCAGGAAG 59.381 50.000 21.13 0.00 40.06 3.46
2934 3191 2.618709 GTTTGTGTCCTGTTCAGGAAGG 59.381 50.000 21.13 0.00 40.06 3.46
2935 3192 0.108585 TGTGTCCTGTTCAGGAAGGC 59.891 55.000 21.13 14.55 40.06 4.35
2936 3193 0.951040 GTGTCCTGTTCAGGAAGGCG 60.951 60.000 21.13 0.00 40.06 5.52
2937 3194 1.118965 TGTCCTGTTCAGGAAGGCGA 61.119 55.000 21.13 3.18 40.06 5.54
2938 3195 0.390472 GTCCTGTTCAGGAAGGCGAG 60.390 60.000 21.13 0.00 40.06 5.03
2939 3196 0.541998 TCCTGTTCAGGAAGGCGAGA 60.542 55.000 17.85 0.00 34.56 4.04
2940 3197 0.390472 CCTGTTCAGGAAGGCGAGAC 60.390 60.000 13.02 0.00 0.00 3.36
2941 3198 0.734253 CTGTTCAGGAAGGCGAGACG 60.734 60.000 0.00 0.00 0.00 4.18
2942 3199 1.176619 TGTTCAGGAAGGCGAGACGA 61.177 55.000 0.00 0.00 0.00 4.20
2943 3200 0.733223 GTTCAGGAAGGCGAGACGAC 60.733 60.000 0.00 0.00 33.59 4.34
2944 3201 2.196382 TTCAGGAAGGCGAGACGACG 62.196 60.000 0.00 0.00 41.28 5.12
2945 3202 3.441290 AGGAAGGCGAGACGACGG 61.441 66.667 0.00 0.00 41.28 4.79
2958 3215 4.821589 GACGGCGGCTCCCTGAAG 62.822 72.222 13.24 0.00 0.00 3.02
2960 3217 3.854669 CGGCGGCTCCCTGAAGAT 61.855 66.667 7.61 0.00 0.00 2.40
2961 3218 2.498941 CGGCGGCTCCCTGAAGATA 61.499 63.158 7.61 0.00 0.00 1.98
2962 3219 1.369321 GGCGGCTCCCTGAAGATAG 59.631 63.158 0.00 0.00 0.00 2.08
2963 3220 1.115930 GGCGGCTCCCTGAAGATAGA 61.116 60.000 0.00 0.00 0.00 1.98
2964 3221 0.753262 GCGGCTCCCTGAAGATAGAA 59.247 55.000 0.00 0.00 0.00 2.10
2965 3222 1.346068 GCGGCTCCCTGAAGATAGAAT 59.654 52.381 0.00 0.00 0.00 2.40
2966 3223 2.563179 GCGGCTCCCTGAAGATAGAATA 59.437 50.000 0.00 0.00 0.00 1.75
2967 3224 3.006967 GCGGCTCCCTGAAGATAGAATAA 59.993 47.826 0.00 0.00 0.00 1.40
2968 3225 4.503296 GCGGCTCCCTGAAGATAGAATAAA 60.503 45.833 0.00 0.00 0.00 1.40
2969 3226 5.233988 CGGCTCCCTGAAGATAGAATAAAG 58.766 45.833 0.00 0.00 0.00 1.85
2970 3227 5.555966 GGCTCCCTGAAGATAGAATAAAGG 58.444 45.833 0.00 0.00 0.00 3.11
2971 3228 5.072464 GGCTCCCTGAAGATAGAATAAAGGT 59.928 44.000 0.00 0.00 0.00 3.50
2972 3229 6.227522 GCTCCCTGAAGATAGAATAAAGGTC 58.772 44.000 0.00 0.00 0.00 3.85
2973 3230 6.042666 GCTCCCTGAAGATAGAATAAAGGTCT 59.957 42.308 0.00 0.00 0.00 3.85
2974 3231 7.604657 TCCCTGAAGATAGAATAAAGGTCTC 57.395 40.000 0.00 0.00 0.00 3.36
2975 3232 6.555360 TCCCTGAAGATAGAATAAAGGTCTCC 59.445 42.308 0.00 0.00 0.00 3.71
2976 3233 6.239743 CCCTGAAGATAGAATAAAGGTCTCCC 60.240 46.154 0.00 0.00 0.00 4.30
2977 3234 6.406692 TGAAGATAGAATAAAGGTCTCCCG 57.593 41.667 0.00 0.00 35.12 5.14
2978 3235 4.875561 AGATAGAATAAAGGTCTCCCGC 57.124 45.455 0.00 0.00 35.12 6.13
2979 3236 3.579151 AGATAGAATAAAGGTCTCCCGCC 59.421 47.826 0.00 0.00 35.12 6.13
2980 3237 1.880941 AGAATAAAGGTCTCCCGCCT 58.119 50.000 0.00 0.00 38.11 5.52
2981 3238 3.042059 AGAATAAAGGTCTCCCGCCTA 57.958 47.619 0.00 0.00 34.81 3.93
2982 3239 2.966516 AGAATAAAGGTCTCCCGCCTAG 59.033 50.000 0.00 0.00 34.81 3.02
2983 3240 1.049402 ATAAAGGTCTCCCGCCTAGC 58.951 55.000 0.00 0.00 34.81 3.42
2984 3241 1.047034 TAAAGGTCTCCCGCCTAGCC 61.047 60.000 0.00 0.00 34.81 3.93
2985 3242 4.862823 AGGTCTCCCGCCTAGCCC 62.863 72.222 0.00 0.00 33.97 5.19
2986 3243 4.862823 GGTCTCCCGCCTAGCCCT 62.863 72.222 0.00 0.00 0.00 5.19
2987 3244 3.228017 GTCTCCCGCCTAGCCCTC 61.228 72.222 0.00 0.00 0.00 4.30
2988 3245 4.896829 TCTCCCGCCTAGCCCTCG 62.897 72.222 0.00 0.00 0.00 4.63
2990 3247 4.772231 TCCCGCCTAGCCCTCGTT 62.772 66.667 0.00 0.00 0.00 3.85
2991 3248 4.222847 CCCGCCTAGCCCTCGTTC 62.223 72.222 0.00 0.00 0.00 3.95
2992 3249 4.222847 CCGCCTAGCCCTCGTTCC 62.223 72.222 0.00 0.00 0.00 3.62
2993 3250 4.570663 CGCCTAGCCCTCGTTCCG 62.571 72.222 0.00 0.00 0.00 4.30
2994 3251 4.222847 GCCTAGCCCTCGTTCCGG 62.223 72.222 0.00 0.00 0.00 5.14
2995 3252 4.222847 CCTAGCCCTCGTTCCGGC 62.223 72.222 0.00 0.00 46.09 6.13
3005 3262 4.125695 GTTCCGGCGGCGTCTAGT 62.126 66.667 30.09 0.00 0.00 2.57
3006 3263 2.438254 TTCCGGCGGCGTCTAGTA 60.438 61.111 30.09 5.58 0.00 1.82
3007 3264 1.825191 TTCCGGCGGCGTCTAGTAT 60.825 57.895 30.09 0.00 0.00 2.12
3008 3265 1.789078 TTCCGGCGGCGTCTAGTATC 61.789 60.000 30.09 0.00 0.00 2.24
3009 3266 2.127345 CGGCGGCGTCTAGTATCG 60.127 66.667 24.74 0.00 0.00 2.92
3010 3267 2.890109 CGGCGGCGTCTAGTATCGT 61.890 63.158 24.74 0.00 0.00 3.73
3011 3268 1.358046 GGCGGCGTCTAGTATCGTT 59.642 57.895 9.37 0.00 0.00 3.85
3012 3269 0.933509 GGCGGCGTCTAGTATCGTTG 60.934 60.000 9.37 0.00 0.00 4.10
3013 3270 0.933509 GCGGCGTCTAGTATCGTTGG 60.934 60.000 9.37 0.00 0.00 3.77
3014 3271 0.379669 CGGCGTCTAGTATCGTTGGT 59.620 55.000 0.00 0.00 0.00 3.67
3015 3272 1.836383 GGCGTCTAGTATCGTTGGTG 58.164 55.000 0.00 0.00 0.00 4.17
3016 3273 1.535437 GGCGTCTAGTATCGTTGGTGG 60.535 57.143 0.00 0.00 0.00 4.61
3017 3274 1.535437 GCGTCTAGTATCGTTGGTGGG 60.535 57.143 0.00 0.00 0.00 4.61
3018 3275 1.535437 CGTCTAGTATCGTTGGTGGGC 60.535 57.143 0.00 0.00 0.00 5.36
3019 3276 0.742505 TCTAGTATCGTTGGTGGGCG 59.257 55.000 0.00 0.00 0.00 6.13
3020 3277 0.458669 CTAGTATCGTTGGTGGGCGT 59.541 55.000 0.00 0.00 0.00 5.68
3021 3278 0.173935 TAGTATCGTTGGTGGGCGTG 59.826 55.000 0.00 0.00 0.00 5.34
3022 3279 1.375013 GTATCGTTGGTGGGCGTGT 60.375 57.895 0.00 0.00 0.00 4.49
3023 3280 1.374885 TATCGTTGGTGGGCGTGTG 60.375 57.895 0.00 0.00 0.00 3.82
3024 3281 2.789845 TATCGTTGGTGGGCGTGTGG 62.790 60.000 0.00 0.00 0.00 4.17
3025 3282 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
3026 3283 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
3027 3284 4.263572 TTGGTGGGCGTGTGGAGG 62.264 66.667 0.00 0.00 0.00 4.30
3030 3287 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
3031 3288 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
3032 3289 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
3033 3290 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
3034 3291 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
3035 3292 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
3036 3293 2.041976 CGTGTGGAGGTGTGTCTCT 58.958 57.895 0.00 0.00 34.39 3.10
3037 3294 0.319040 CGTGTGGAGGTGTGTCTCTG 60.319 60.000 0.00 0.00 34.39 3.35
3038 3295 0.034059 GTGTGGAGGTGTGTCTCTGG 59.966 60.000 0.00 0.00 34.39 3.86
3039 3296 1.004440 GTGGAGGTGTGTCTCTGGC 60.004 63.158 0.00 0.00 34.39 4.85
3040 3297 1.459348 TGGAGGTGTGTCTCTGGCA 60.459 57.895 0.00 0.00 34.39 4.92
3041 3298 1.294780 GGAGGTGTGTCTCTGGCAG 59.705 63.158 8.58 8.58 34.39 4.85
3042 3299 1.188219 GGAGGTGTGTCTCTGGCAGA 61.188 60.000 17.68 17.68 34.39 4.26
3043 3300 0.901124 GAGGTGTGTCTCTGGCAGAT 59.099 55.000 19.11 0.00 32.08 2.90
3044 3301 0.901124 AGGTGTGTCTCTGGCAGATC 59.099 55.000 19.11 14.40 32.08 2.75
3045 3302 0.901124 GGTGTGTCTCTGGCAGATCT 59.099 55.000 19.11 0.00 32.08 2.75
3046 3303 2.103373 GGTGTGTCTCTGGCAGATCTA 58.897 52.381 19.11 3.87 32.08 1.98
3047 3304 2.697751 GGTGTGTCTCTGGCAGATCTAT 59.302 50.000 19.11 0.00 32.08 1.98
3048 3305 3.243704 GGTGTGTCTCTGGCAGATCTATC 60.244 52.174 19.11 8.52 32.08 2.08
3049 3306 3.636300 GTGTGTCTCTGGCAGATCTATCT 59.364 47.826 19.11 0.00 37.72 1.98
3050 3307 4.099266 GTGTGTCTCTGGCAGATCTATCTT 59.901 45.833 19.11 0.00 34.22 2.40
3051 3308 4.713814 TGTGTCTCTGGCAGATCTATCTTT 59.286 41.667 19.11 0.00 34.22 2.52
3052 3309 5.049167 GTGTCTCTGGCAGATCTATCTTTG 58.951 45.833 19.11 2.82 34.22 2.77
3053 3310 4.100653 TGTCTCTGGCAGATCTATCTTTGG 59.899 45.833 19.11 2.03 34.22 3.28
3054 3311 4.100808 GTCTCTGGCAGATCTATCTTTGGT 59.899 45.833 19.11 0.00 34.22 3.67
3055 3312 4.100653 TCTCTGGCAGATCTATCTTTGGTG 59.899 45.833 19.11 1.26 34.22 4.17
3056 3313 3.135348 TCTGGCAGATCTATCTTTGGTGG 59.865 47.826 14.43 0.00 34.22 4.61
3057 3314 3.114606 TGGCAGATCTATCTTTGGTGGA 58.885 45.455 0.00 0.00 34.22 4.02
3058 3315 3.718434 TGGCAGATCTATCTTTGGTGGAT 59.282 43.478 0.00 0.00 34.22 3.41
3059 3316 4.166725 TGGCAGATCTATCTTTGGTGGATT 59.833 41.667 0.00 0.00 34.22 3.01
3060 3317 5.136105 GGCAGATCTATCTTTGGTGGATTT 58.864 41.667 0.00 0.00 34.22 2.17
3061 3318 5.009410 GGCAGATCTATCTTTGGTGGATTTG 59.991 44.000 0.00 0.00 34.22 2.32
3062 3319 5.506982 GCAGATCTATCTTTGGTGGATTTGC 60.507 44.000 0.00 4.53 37.36 3.68
3063 3320 5.826737 CAGATCTATCTTTGGTGGATTTGCT 59.173 40.000 0.00 0.00 34.22 3.91
3064 3321 6.017275 CAGATCTATCTTTGGTGGATTTGCTC 60.017 42.308 0.00 0.00 34.22 4.26
3065 3322 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
3066 3323 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
3067 3324 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
3068 3325 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
3069 3326 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
3070 3327 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
3071 3328 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
3072 3329 1.134401 GGTGGATTTGCTCGGATCTCA 60.134 52.381 0.00 0.00 0.00 3.27
3073 3330 2.486191 GGTGGATTTGCTCGGATCTCAT 60.486 50.000 0.00 0.00 0.00 2.90
3074 3331 2.805099 GTGGATTTGCTCGGATCTCATC 59.195 50.000 0.00 0.00 0.00 2.92
3075 3332 2.064762 GGATTTGCTCGGATCTCATCG 58.935 52.381 0.00 0.00 0.00 3.84
3076 3333 2.546795 GGATTTGCTCGGATCTCATCGT 60.547 50.000 0.00 0.00 0.00 3.73
3077 3334 2.672961 TTTGCTCGGATCTCATCGTT 57.327 45.000 0.00 0.00 0.00 3.85
3078 3335 1.926561 TTGCTCGGATCTCATCGTTG 58.073 50.000 0.00 0.00 0.00 4.10
3079 3336 0.817654 TGCTCGGATCTCATCGTTGT 59.182 50.000 0.00 0.00 0.00 3.32
3080 3337 1.204704 TGCTCGGATCTCATCGTTGTT 59.795 47.619 0.00 0.00 0.00 2.83
3081 3338 1.855360 GCTCGGATCTCATCGTTGTTC 59.145 52.381 0.00 0.00 0.00 3.18
3082 3339 2.112522 CTCGGATCTCATCGTTGTTCG 58.887 52.381 0.00 0.00 41.41 3.95
3083 3340 1.471287 TCGGATCTCATCGTTGTTCGT 59.529 47.619 0.00 0.00 40.80 3.85
3084 3341 1.846782 CGGATCTCATCGTTGTTCGTC 59.153 52.381 0.00 0.00 40.80 4.20
3085 3342 2.478031 CGGATCTCATCGTTGTTCGTCT 60.478 50.000 0.00 0.00 40.80 4.18
3086 3343 3.242641 CGGATCTCATCGTTGTTCGTCTA 60.243 47.826 0.00 0.00 40.80 2.59
3087 3344 4.036352 GGATCTCATCGTTGTTCGTCTAC 58.964 47.826 0.00 0.00 40.80 2.59
3088 3345 3.113325 TCTCATCGTTGTTCGTCTACG 57.887 47.619 0.00 0.00 44.05 3.51
3089 3346 2.481568 TCTCATCGTTGTTCGTCTACGT 59.518 45.455 2.02 0.00 43.41 3.57
3090 3347 3.058708 TCTCATCGTTGTTCGTCTACGTT 60.059 43.478 0.00 6.32 43.41 3.99
3091 3348 3.228749 TCATCGTTGTTCGTCTACGTTC 58.771 45.455 0.00 0.00 43.41 3.95
3092 3349 1.662360 TCGTTGTTCGTCTACGTTCG 58.338 50.000 0.00 0.00 43.41 3.95
3093 3350 1.003972 TCGTTGTTCGTCTACGTTCGT 60.004 47.619 0.00 2.91 43.41 3.85
3094 3351 1.119497 CGTTGTTCGTCTACGTTCGTG 59.881 52.381 8.14 0.00 39.58 4.35
3095 3352 2.111756 GTTGTTCGTCTACGTTCGTGT 58.888 47.619 8.14 0.00 40.80 4.49
3096 3353 1.745566 TGTTCGTCTACGTTCGTGTG 58.254 50.000 8.14 1.60 40.80 3.82
3097 3354 1.063912 TGTTCGTCTACGTTCGTGTGT 59.936 47.619 8.14 0.00 40.80 3.72
3098 3355 1.705559 GTTCGTCTACGTTCGTGTGTC 59.294 52.381 8.14 0.00 40.80 3.67
3099 3356 1.220529 TCGTCTACGTTCGTGTGTCT 58.779 50.000 8.14 0.00 40.80 3.41
3100 3357 1.599071 TCGTCTACGTTCGTGTGTCTT 59.401 47.619 8.14 0.00 40.80 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.379527 CTGGTTGCCGAGGGTATTTC 58.620 55.000 0.00 0.00 0.00 2.17
61 62 0.325860 TACCTGGTTGCCGAGGGTAT 60.326 55.000 3.84 0.00 33.16 2.73
249 255 2.242196 GGATGTCCATTTGGAGGGAGAA 59.758 50.000 0.00 0.00 46.49 2.87
271 277 1.993370 GAACAATCGTCGTCTTCCAGG 59.007 52.381 0.00 0.00 0.00 4.45
293 299 8.994170 GTAGTAGATTAATCCTTTCATGCTTCC 58.006 37.037 11.92 0.00 0.00 3.46
352 358 0.607489 ACATGGAGTGAAGCACCAGC 60.607 55.000 0.00 0.00 41.07 4.85
477 484 7.014808 AGACTTTAGCTCAATCCTACCAGTATC 59.985 40.741 0.00 0.00 0.00 2.24
480 487 5.026790 AGACTTTAGCTCAATCCTACCAGT 58.973 41.667 0.00 0.00 0.00 4.00
481 488 5.606348 AGACTTTAGCTCAATCCTACCAG 57.394 43.478 0.00 0.00 0.00 4.00
486 493 5.936956 CAGTTGAAGACTTTAGCTCAATCCT 59.063 40.000 0.00 0.00 36.10 3.24
487 494 5.391416 GCAGTTGAAGACTTTAGCTCAATCC 60.391 44.000 0.00 0.00 36.10 3.01
556 609 1.266989 CAAGAAACCAACGGGAAGAGC 59.733 52.381 0.00 0.00 38.05 4.09
589 642 6.535508 AGAAATATAGTTTCTCTCAACCGTGC 59.464 38.462 0.00 0.00 33.86 5.34
659 712 1.550976 TGATGTGGCCATGTGTACGTA 59.449 47.619 9.72 0.00 0.00 3.57
712 765 4.998033 GGAATAGTCTAATGCTGGCCTTAC 59.002 45.833 3.32 0.00 0.00 2.34
713 766 4.262463 CGGAATAGTCTAATGCTGGCCTTA 60.262 45.833 3.32 0.00 0.00 2.69
765 818 2.154074 GGTCCTGTGTGGGGAGGTT 61.154 63.158 0.00 0.00 36.20 3.50
770 823 4.502604 CGTAATAATAGGTCCTGTGTGGGG 60.503 50.000 0.00 0.00 36.20 4.96
777 833 6.645790 ACACCTACGTAATAATAGGTCCTG 57.354 41.667 0.00 0.00 46.86 3.86
780 836 7.206981 TGCTACACCTACGTAATAATAGGTC 57.793 40.000 2.39 0.00 46.86 3.85
782 838 7.063074 GCAATGCTACACCTACGTAATAATAGG 59.937 40.741 0.00 0.00 43.26 2.57
783 839 7.813148 AGCAATGCTACACCTACGTAATAATAG 59.187 37.037 5.69 0.00 36.99 1.73
785 841 6.522054 AGCAATGCTACACCTACGTAATAAT 58.478 36.000 5.69 0.00 36.99 1.28
786 842 5.909477 AGCAATGCTACACCTACGTAATAA 58.091 37.500 5.69 0.00 36.99 1.40
787 843 5.508489 GGAGCAATGCTACACCTACGTAATA 60.508 44.000 13.46 0.00 39.71 0.98
788 844 4.369182 GAGCAATGCTACACCTACGTAAT 58.631 43.478 8.12 0.00 39.88 1.89
789 845 3.429822 GGAGCAATGCTACACCTACGTAA 60.430 47.826 13.46 0.00 39.71 3.18
790 846 2.100252 GGAGCAATGCTACACCTACGTA 59.900 50.000 13.46 0.00 39.71 3.57
791 847 1.134788 GGAGCAATGCTACACCTACGT 60.135 52.381 13.46 0.00 39.71 3.57
793 849 2.555199 CTGGAGCAATGCTACACCTAC 58.445 52.381 17.45 0.00 42.40 3.18
794 850 1.486310 CCTGGAGCAATGCTACACCTA 59.514 52.381 17.45 0.00 42.40 3.08
795 851 0.254178 CCTGGAGCAATGCTACACCT 59.746 55.000 17.45 0.00 42.40 4.00
796 852 0.253044 TCCTGGAGCAATGCTACACC 59.747 55.000 17.45 10.37 42.40 4.16
797 853 1.740025 GTTCCTGGAGCAATGCTACAC 59.260 52.381 17.45 2.73 42.40 2.90
800 856 1.065199 CCTGTTCCTGGAGCAATGCTA 60.065 52.381 8.12 0.00 39.88 3.49
801 857 0.323178 CCTGTTCCTGGAGCAATGCT 60.323 55.000 7.79 7.79 43.88 3.79
803 859 1.271543 TGACCTGTTCCTGGAGCAATG 60.272 52.381 14.36 10.68 0.00 2.82
804 860 1.067295 TGACCTGTTCCTGGAGCAAT 58.933 50.000 14.36 5.75 0.00 3.56
805 861 0.108585 GTGACCTGTTCCTGGAGCAA 59.891 55.000 14.36 0.00 0.00 3.91
806 862 1.754745 GTGACCTGTTCCTGGAGCA 59.245 57.895 12.85 12.85 0.00 4.26
807 863 1.003233 GGTGACCTGTTCCTGGAGC 60.003 63.158 3.27 3.27 0.00 4.70
809 865 0.692476 CATGGTGACCTGTTCCTGGA 59.308 55.000 2.11 0.00 0.00 3.86
810 866 0.962356 GCATGGTGACCTGTTCCTGG 60.962 60.000 2.11 0.00 0.00 4.45
811 867 1.300971 CGCATGGTGACCTGTTCCTG 61.301 60.000 2.11 0.00 0.00 3.86
813 869 2.040544 CCGCATGGTGACCTGTTCC 61.041 63.158 2.11 0.00 0.00 3.62
814 870 2.690778 GCCGCATGGTGACCTGTTC 61.691 63.158 2.11 0.00 37.67 3.18
816 872 3.907260 CTGCCGCATGGTGACCTGT 62.907 63.158 2.11 0.00 37.67 4.00
817 873 3.129502 CTGCCGCATGGTGACCTG 61.130 66.667 2.11 0.00 37.67 4.00
818 874 3.320879 CTCTGCCGCATGGTGACCT 62.321 63.158 2.11 0.00 37.67 3.85
819 875 2.821366 CTCTGCCGCATGGTGACC 60.821 66.667 0.00 0.00 37.67 4.02
820 876 3.503363 GCTCTGCCGCATGGTGAC 61.503 66.667 0.00 0.00 37.67 3.67
821 877 3.549900 TTGCTCTGCCGCATGGTGA 62.550 57.895 0.00 0.00 40.04 4.02
822 878 3.047718 CTTGCTCTGCCGCATGGTG 62.048 63.158 0.00 0.00 40.04 4.17
823 879 2.749044 CTTGCTCTGCCGCATGGT 60.749 61.111 0.00 0.00 40.04 3.55
825 881 1.989966 CTTCCTTGCTCTGCCGCATG 61.990 60.000 0.00 0.00 40.04 4.06
827 883 2.359107 CTTCCTTGCTCTGCCGCA 60.359 61.111 0.00 0.00 38.31 5.69
828 884 2.883267 ATCCTTCCTTGCTCTGCCGC 62.883 60.000 0.00 0.00 0.00 6.53
829 885 0.813210 GATCCTTCCTTGCTCTGCCG 60.813 60.000 0.00 0.00 0.00 5.69
830 886 0.465278 GGATCCTTCCTTGCTCTGCC 60.465 60.000 3.84 0.00 39.14 4.85
831 887 0.254178 TGGATCCTTCCTTGCTCTGC 59.746 55.000 14.23 0.00 43.07 4.26
832 888 2.795231 TTGGATCCTTCCTTGCTCTG 57.205 50.000 14.23 0.00 43.07 3.35
833 889 3.895998 GATTTGGATCCTTCCTTGCTCT 58.104 45.455 14.23 0.00 43.07 4.09
947 1094 1.068541 GGCTAGGAAACAAAACCGCTG 60.069 52.381 0.00 0.00 0.00 5.18
1348 1508 1.613317 ATCATCTTGGCGACGGTGGA 61.613 55.000 0.00 0.00 0.00 4.02
1824 2002 4.794439 TGGCCGATCTCGTGCACG 62.794 66.667 32.76 32.76 37.31 5.34
1929 2107 3.378331 GATGCCGTCGACGTCGTCT 62.378 63.158 34.40 15.32 40.80 4.18
2106 2296 0.224746 CGTGAATCGATCGACGCAAG 59.775 55.000 22.06 18.39 42.86 4.01
2107 2297 0.179184 TCGTGAATCGATCGACGCAA 60.179 50.000 22.06 3.61 44.01 4.85
2108 2298 1.426223 TCGTGAATCGATCGACGCA 59.574 52.632 22.06 18.09 44.01 5.24
2109 2299 4.280276 TCGTGAATCGATCGACGC 57.720 55.556 22.06 15.57 44.01 5.19
2314 2546 6.456501 AGATAACTACTGAAAAGCGACAACT 58.543 36.000 0.00 0.00 0.00 3.16
2328 2560 3.318557 GCCTGCTCCGTTAGATAACTACT 59.681 47.826 1.58 0.00 34.12 2.57
2381 2626 1.826720 GTCCAAATGCCACATCCACAT 59.173 47.619 0.00 0.00 0.00 3.21
2382 2627 1.255882 GTCCAAATGCCACATCCACA 58.744 50.000 0.00 0.00 0.00 4.17
2383 2628 0.171007 CGTCCAAATGCCACATCCAC 59.829 55.000 0.00 0.00 0.00 4.02
2384 2629 0.964860 CCGTCCAAATGCCACATCCA 60.965 55.000 0.00 0.00 0.00 3.41
2385 2630 1.809207 CCGTCCAAATGCCACATCC 59.191 57.895 0.00 0.00 0.00 3.51
2386 2631 1.139520 GCCGTCCAAATGCCACATC 59.860 57.895 0.00 0.00 0.00 3.06
2451 2696 3.385577 GTGGACTTATTCGCCTCATCTC 58.614 50.000 0.00 0.00 0.00 2.75
2455 2700 0.892755 ACGTGGACTTATTCGCCTCA 59.107 50.000 0.00 0.00 0.00 3.86
2460 2705 3.489180 AGTCTCACGTGGACTTATTCG 57.511 47.619 24.94 0.00 40.65 3.34
2486 2738 2.820787 AGTCAGACTCTAAACGGGTCAG 59.179 50.000 0.00 0.00 32.98 3.51
2533 2788 6.073711 TGTTTTTGTTTCTTTTCCCGTGTTTC 60.074 34.615 0.00 0.00 0.00 2.78
2579 2834 6.205784 ACATCCAAACGACATTTTTGTACTG 58.794 36.000 0.00 0.00 32.92 2.74
2580 2835 6.038825 TGACATCCAAACGACATTTTTGTACT 59.961 34.615 0.00 0.00 32.92 2.73
2581 2836 6.141685 GTGACATCCAAACGACATTTTTGTAC 59.858 38.462 0.00 0.00 32.92 2.90
2582 2837 6.202937 GTGACATCCAAACGACATTTTTGTA 58.797 36.000 0.00 0.00 32.92 2.41
2583 2838 5.040635 GTGACATCCAAACGACATTTTTGT 58.959 37.500 0.00 0.00 32.92 2.83
2642 2897 4.111375 ACACGAGGTAATGAGACATCAC 57.889 45.455 0.00 0.00 38.57 3.06
2643 2898 4.801330 AACACGAGGTAATGAGACATCA 57.199 40.909 0.00 0.00 40.50 3.07
2666 2921 7.765695 TTCCATAGAAATTTTGAAGCAGACT 57.234 32.000 0.00 0.00 0.00 3.24
2679 2934 7.037873 TGGTACGGGCTATTATTCCATAGAAAT 60.038 37.037 0.00 0.00 35.09 2.17
2695 2951 1.282382 AGGTTTGTATGGTACGGGCT 58.718 50.000 0.00 0.00 0.00 5.19
2702 2958 7.004086 TCAGATTTCTTCAAGGTTTGTATGGT 58.996 34.615 0.00 0.00 0.00 3.55
2806 3063 2.186125 CCGGAAACTAGGCGGACC 59.814 66.667 0.00 0.00 0.00 4.46
2807 3064 1.447314 CACCGGAAACTAGGCGGAC 60.447 63.158 9.46 0.00 0.00 4.79
2808 3065 2.652095 CCACCGGAAACTAGGCGGA 61.652 63.158 9.46 0.00 31.55 5.54
2809 3066 2.125269 CCACCGGAAACTAGGCGG 60.125 66.667 9.46 0.00 0.00 6.13
2810 3067 2.818274 GCCACCGGAAACTAGGCG 60.818 66.667 9.46 0.00 35.42 5.52
2811 3068 1.449778 GAGCCACCGGAAACTAGGC 60.450 63.158 9.46 11.47 45.54 3.93
2812 3069 1.409427 CTAGAGCCACCGGAAACTAGG 59.591 57.143 9.46 0.54 0.00 3.02
2813 3070 1.409427 CCTAGAGCCACCGGAAACTAG 59.591 57.143 9.46 12.75 0.00 2.57
2814 3071 1.481871 CCTAGAGCCACCGGAAACTA 58.518 55.000 9.46 3.56 0.00 2.24
2815 3072 1.265454 CCCTAGAGCCACCGGAAACT 61.265 60.000 9.46 0.37 0.00 2.66
2816 3073 1.221021 CCCTAGAGCCACCGGAAAC 59.779 63.158 9.46 0.00 0.00 2.78
2817 3074 2.666098 GCCCTAGAGCCACCGGAAA 61.666 63.158 9.46 0.00 0.00 3.13
2818 3075 3.081409 GCCCTAGAGCCACCGGAA 61.081 66.667 9.46 0.00 0.00 4.30
2826 3083 3.155750 CCTCCATGGCCCTAGAGC 58.844 66.667 6.96 0.00 0.00 4.09
2836 3093 4.552365 ATCCACCGCGCCTCCATG 62.552 66.667 0.00 0.00 0.00 3.66
2837 3094 4.241555 GATCCACCGCGCCTCCAT 62.242 66.667 0.00 0.00 0.00 3.41
2840 3097 4.899239 CAGGATCCACCGCGCCTC 62.899 72.222 15.82 0.00 44.74 4.70
2844 3101 4.776322 TTGCCAGGATCCACCGCG 62.776 66.667 15.82 0.00 44.74 6.46
2845 3102 2.825836 CTTGCCAGGATCCACCGC 60.826 66.667 15.82 12.41 44.74 5.68
2846 3103 2.124570 CCTTGCCAGGATCCACCG 60.125 66.667 15.82 1.33 44.19 4.94
2847 3104 2.276740 CCCTTGCCAGGATCCACC 59.723 66.667 15.82 1.73 44.19 4.61
2848 3105 2.440980 GCCCTTGCCAGGATCCAC 60.441 66.667 15.82 3.31 44.19 4.02
2870 3127 0.976590 ACTAGAAACGGAGCCCTCCC 60.977 60.000 8.68 0.00 46.96 4.30
2871 3128 0.903236 AACTAGAAACGGAGCCCTCC 59.097 55.000 4.19 4.19 46.18 4.30
2872 3129 2.764439 AAACTAGAAACGGAGCCCTC 57.236 50.000 0.00 0.00 0.00 4.30
2873 3130 3.503800 AAAAACTAGAAACGGAGCCCT 57.496 42.857 0.00 0.00 0.00 5.19
2895 3152 7.616313 ACACAAACCCTAACAAGATTGAAAAA 58.384 30.769 0.00 0.00 0.00 1.94
2896 3153 7.176589 ACACAAACCCTAACAAGATTGAAAA 57.823 32.000 0.00 0.00 0.00 2.29
2897 3154 6.183360 GGACACAAACCCTAACAAGATTGAAA 60.183 38.462 0.00 0.00 0.00 2.69
2898 3155 5.300792 GGACACAAACCCTAACAAGATTGAA 59.699 40.000 0.00 0.00 0.00 2.69
2899 3156 4.825085 GGACACAAACCCTAACAAGATTGA 59.175 41.667 0.00 0.00 0.00 2.57
2900 3157 4.827284 AGGACACAAACCCTAACAAGATTG 59.173 41.667 0.00 0.00 0.00 2.67
2901 3158 4.827284 CAGGACACAAACCCTAACAAGATT 59.173 41.667 0.00 0.00 0.00 2.40
2902 3159 4.141251 ACAGGACACAAACCCTAACAAGAT 60.141 41.667 0.00 0.00 0.00 2.40
2903 3160 3.201266 ACAGGACACAAACCCTAACAAGA 59.799 43.478 0.00 0.00 0.00 3.02
2904 3161 3.551846 ACAGGACACAAACCCTAACAAG 58.448 45.455 0.00 0.00 0.00 3.16
2905 3162 3.655615 ACAGGACACAAACCCTAACAA 57.344 42.857 0.00 0.00 0.00 2.83
2906 3163 3.054287 TGAACAGGACACAAACCCTAACA 60.054 43.478 0.00 0.00 0.00 2.41
2907 3164 3.547746 TGAACAGGACACAAACCCTAAC 58.452 45.455 0.00 0.00 0.00 2.34
2908 3165 3.815809 CTGAACAGGACACAAACCCTAA 58.184 45.455 0.00 0.00 0.00 2.69
2909 3166 3.485463 CTGAACAGGACACAAACCCTA 57.515 47.619 0.00 0.00 0.00 3.53
2910 3167 2.348411 CTGAACAGGACACAAACCCT 57.652 50.000 0.00 0.00 0.00 4.34
2922 3179 0.734253 CGTCTCGCCTTCCTGAACAG 60.734 60.000 0.00 0.00 0.00 3.16
2923 3180 1.176619 TCGTCTCGCCTTCCTGAACA 61.177 55.000 0.00 0.00 0.00 3.18
2924 3181 0.733223 GTCGTCTCGCCTTCCTGAAC 60.733 60.000 0.00 0.00 0.00 3.18
2925 3182 1.585006 GTCGTCTCGCCTTCCTGAA 59.415 57.895 0.00 0.00 0.00 3.02
2926 3183 2.687805 CGTCGTCTCGCCTTCCTGA 61.688 63.158 0.00 0.00 0.00 3.86
2927 3184 2.202492 CGTCGTCTCGCCTTCCTG 60.202 66.667 0.00 0.00 0.00 3.86
2928 3185 3.441290 CCGTCGTCTCGCCTTCCT 61.441 66.667 0.00 0.00 0.00 3.36
2941 3198 4.821589 CTTCAGGGAGCCGCCGTC 62.822 72.222 0.00 0.00 37.63 4.79
2943 3200 2.427540 CTATCTTCAGGGAGCCGCCG 62.428 65.000 0.00 0.00 37.63 6.46
2944 3201 1.115930 TCTATCTTCAGGGAGCCGCC 61.116 60.000 0.00 0.00 0.00 6.13
2945 3202 0.753262 TTCTATCTTCAGGGAGCCGC 59.247 55.000 0.00 0.00 0.00 6.53
2946 3203 4.873746 TTATTCTATCTTCAGGGAGCCG 57.126 45.455 0.00 0.00 0.00 5.52
2947 3204 5.072464 ACCTTTATTCTATCTTCAGGGAGCC 59.928 44.000 0.00 0.00 0.00 4.70
2948 3205 6.042666 AGACCTTTATTCTATCTTCAGGGAGC 59.957 42.308 0.00 0.00 0.00 4.70
2949 3206 7.256154 GGAGACCTTTATTCTATCTTCAGGGAG 60.256 44.444 0.00 0.00 0.00 4.30
2950 3207 6.555360 GGAGACCTTTATTCTATCTTCAGGGA 59.445 42.308 0.00 0.00 0.00 4.20
2951 3208 6.764379 GGAGACCTTTATTCTATCTTCAGGG 58.236 44.000 0.00 0.00 0.00 4.45
2970 3227 3.228017 GAGGGCTAGGCGGGAGAC 61.228 72.222 10.58 0.00 39.17 3.36
2971 3228 4.896829 CGAGGGCTAGGCGGGAGA 62.897 72.222 10.58 0.00 0.00 3.71
2973 3230 4.772231 AACGAGGGCTAGGCGGGA 62.772 66.667 10.58 0.00 0.00 5.14
2974 3231 4.222847 GAACGAGGGCTAGGCGGG 62.223 72.222 10.58 4.34 0.00 6.13
2975 3232 4.222847 GGAACGAGGGCTAGGCGG 62.223 72.222 10.58 4.71 0.00 6.13
2988 3245 2.068277 ATACTAGACGCCGCCGGAAC 62.068 60.000 7.68 0.00 39.22 3.62
2989 3246 1.789078 GATACTAGACGCCGCCGGAA 61.789 60.000 7.68 0.00 39.22 4.30
2990 3247 2.203252 ATACTAGACGCCGCCGGA 60.203 61.111 7.68 0.00 39.22 5.14
2991 3248 2.254651 GATACTAGACGCCGCCGG 59.745 66.667 0.00 0.00 39.22 6.13
2992 3249 2.127345 CGATACTAGACGCCGCCG 60.127 66.667 0.00 0.00 41.14 6.46
2993 3250 0.933509 CAACGATACTAGACGCCGCC 60.934 60.000 0.00 0.00 0.00 6.13
2994 3251 0.933509 CCAACGATACTAGACGCCGC 60.934 60.000 0.00 0.00 0.00 6.53
2995 3252 0.379669 ACCAACGATACTAGACGCCG 59.620 55.000 0.00 0.00 0.00 6.46
2996 3253 1.535437 CCACCAACGATACTAGACGCC 60.535 57.143 0.00 0.00 0.00 5.68
2997 3254 1.535437 CCCACCAACGATACTAGACGC 60.535 57.143 0.00 0.00 0.00 5.19
2998 3255 1.535437 GCCCACCAACGATACTAGACG 60.535 57.143 0.00 1.90 0.00 4.18
2999 3256 1.535437 CGCCCACCAACGATACTAGAC 60.535 57.143 0.00 0.00 0.00 2.59
3000 3257 0.742505 CGCCCACCAACGATACTAGA 59.257 55.000 0.00 0.00 0.00 2.43
3001 3258 0.458669 ACGCCCACCAACGATACTAG 59.541 55.000 0.00 0.00 0.00 2.57
3002 3259 0.173935 CACGCCCACCAACGATACTA 59.826 55.000 0.00 0.00 0.00 1.82
3003 3260 1.079405 CACGCCCACCAACGATACT 60.079 57.895 0.00 0.00 0.00 2.12
3004 3261 1.375013 ACACGCCCACCAACGATAC 60.375 57.895 0.00 0.00 0.00 2.24
3005 3262 1.374885 CACACGCCCACCAACGATA 60.375 57.895 0.00 0.00 0.00 2.92
3006 3263 2.668212 CACACGCCCACCAACGAT 60.668 61.111 0.00 0.00 0.00 3.73
3007 3264 4.920112 CCACACGCCCACCAACGA 62.920 66.667 0.00 0.00 0.00 3.85
3008 3265 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
3009 3266 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
3010 3267 4.263572 CCTCCACACGCCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
3013 3270 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
3014 3271 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
3015 3272 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
3016 3273 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
3017 3274 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
3018 3275 0.319040 CAGAGACACACCTCCACACG 60.319 60.000 0.00 0.00 33.76 4.49
3019 3276 0.034059 CCAGAGACACACCTCCACAC 59.966 60.000 0.00 0.00 33.76 3.82
3020 3277 1.758440 GCCAGAGACACACCTCCACA 61.758 60.000 0.00 0.00 33.76 4.17
3021 3278 1.004440 GCCAGAGACACACCTCCAC 60.004 63.158 0.00 0.00 33.76 4.02
3022 3279 1.459348 TGCCAGAGACACACCTCCA 60.459 57.895 0.00 0.00 33.76 3.86
3023 3280 1.188219 TCTGCCAGAGACACACCTCC 61.188 60.000 0.00 0.00 33.76 4.30
3024 3281 0.901124 ATCTGCCAGAGACACACCTC 59.099 55.000 0.00 0.00 31.75 3.85
3025 3282 0.901124 GATCTGCCAGAGACACACCT 59.099 55.000 0.00 0.00 31.75 4.00
3026 3283 0.901124 AGATCTGCCAGAGACACACC 59.099 55.000 0.00 0.00 31.75 4.16
3027 3284 3.636300 AGATAGATCTGCCAGAGACACAC 59.364 47.826 5.18 0.00 35.42 3.82
3028 3285 3.908476 AGATAGATCTGCCAGAGACACA 58.092 45.455 5.18 0.00 35.42 3.72
3029 3286 4.935352 AAGATAGATCTGCCAGAGACAC 57.065 45.455 5.18 0.00 37.19 3.67
3030 3287 4.100653 CCAAAGATAGATCTGCCAGAGACA 59.899 45.833 5.18 0.00 37.19 3.41
3031 3288 4.100808 ACCAAAGATAGATCTGCCAGAGAC 59.899 45.833 5.18 0.00 37.19 3.36
3032 3289 4.100653 CACCAAAGATAGATCTGCCAGAGA 59.899 45.833 5.18 0.00 37.19 3.10
3033 3290 4.378774 CACCAAAGATAGATCTGCCAGAG 58.621 47.826 5.18 0.00 37.19 3.35
3034 3291 3.135348 CCACCAAAGATAGATCTGCCAGA 59.865 47.826 5.18 0.00 37.19 3.86
3035 3292 3.135348 TCCACCAAAGATAGATCTGCCAG 59.865 47.826 5.18 0.00 37.19 4.85
3036 3293 3.114606 TCCACCAAAGATAGATCTGCCA 58.885 45.455 5.18 0.00 37.19 4.92
3037 3294 3.845781 TCCACCAAAGATAGATCTGCC 57.154 47.619 5.18 0.00 37.19 4.85
3038 3295 5.506982 GCAAATCCACCAAAGATAGATCTGC 60.507 44.000 5.18 0.00 37.19 4.26
3039 3296 5.826737 AGCAAATCCACCAAAGATAGATCTG 59.173 40.000 5.18 0.00 37.19 2.90
3040 3297 6.011122 AGCAAATCCACCAAAGATAGATCT 57.989 37.500 0.00 0.00 39.22 2.75
3041 3298 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
3042 3299 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
3043 3300 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
3044 3301 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
3045 3302 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
3046 3303 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
3047 3304 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
3048 3305 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
3049 3306 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
3050 3307 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
3051 3308 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
3052 3309 1.134401 TGAGATCCGAGCAAATCCACC 60.134 52.381 0.00 0.00 0.00 4.61
3053 3310 2.315925 TGAGATCCGAGCAAATCCAC 57.684 50.000 0.00 0.00 0.00 4.02
3054 3311 2.546584 CGATGAGATCCGAGCAAATCCA 60.547 50.000 0.00 0.00 0.00 3.41
3055 3312 2.064762 CGATGAGATCCGAGCAAATCC 58.935 52.381 0.00 0.00 0.00 3.01
3056 3313 2.748605 ACGATGAGATCCGAGCAAATC 58.251 47.619 0.00 0.00 0.00 2.17
3057 3314 2.868583 CAACGATGAGATCCGAGCAAAT 59.131 45.455 0.00 0.00 0.00 2.32
3058 3315 2.270923 CAACGATGAGATCCGAGCAAA 58.729 47.619 0.00 0.00 0.00 3.68
3059 3316 1.204704 ACAACGATGAGATCCGAGCAA 59.795 47.619 0.00 0.00 0.00 3.91
3060 3317 0.817654 ACAACGATGAGATCCGAGCA 59.182 50.000 0.00 0.00 0.00 4.26
3061 3318 1.855360 GAACAACGATGAGATCCGAGC 59.145 52.381 0.00 0.00 0.00 5.03
3062 3319 2.112522 CGAACAACGATGAGATCCGAG 58.887 52.381 0.00 0.00 45.77 4.63
3063 3320 1.471287 ACGAACAACGATGAGATCCGA 59.529 47.619 0.00 0.00 45.77 4.55
3064 3321 1.846782 GACGAACAACGATGAGATCCG 59.153 52.381 0.00 0.00 45.77 4.18
3065 3322 3.152261 AGACGAACAACGATGAGATCC 57.848 47.619 0.00 0.00 45.77 3.36
3066 3323 3.719840 CGTAGACGAACAACGATGAGATC 59.280 47.826 0.00 0.00 45.77 2.75
3067 3324 3.126514 ACGTAGACGAACAACGATGAGAT 59.873 43.478 9.41 0.00 45.77 2.75
3068 3325 2.481568 ACGTAGACGAACAACGATGAGA 59.518 45.455 9.41 0.00 45.77 3.27
3069 3326 2.847901 ACGTAGACGAACAACGATGAG 58.152 47.619 9.41 0.00 45.77 2.90
3070 3327 2.975410 ACGTAGACGAACAACGATGA 57.025 45.000 9.41 0.00 45.77 2.92
3071 3328 2.024875 CGAACGTAGACGAACAACGATG 59.975 50.000 9.41 0.00 45.77 3.84
3072 3329 2.236690 CGAACGTAGACGAACAACGAT 58.763 47.619 9.41 0.42 45.77 3.73
3073 3330 1.003972 ACGAACGTAGACGAACAACGA 60.004 47.619 9.41 0.00 45.77 3.85
3075 3332 2.098211 CACACGAACGTAGACGAACAAC 60.098 50.000 9.41 0.00 43.02 3.32
3076 3333 2.110990 CACACGAACGTAGACGAACAA 58.889 47.619 9.41 0.00 43.02 2.83
3077 3334 1.063912 ACACACGAACGTAGACGAACA 59.936 47.619 9.41 0.00 43.02 3.18
3078 3335 1.705559 GACACACGAACGTAGACGAAC 59.294 52.381 9.41 1.55 43.02 3.95
3079 3336 1.599071 AGACACACGAACGTAGACGAA 59.401 47.619 9.41 0.00 43.02 3.85
3080 3337 1.220529 AGACACACGAACGTAGACGA 58.779 50.000 9.41 0.00 43.02 4.20
3081 3338 2.028287 AAGACACACGAACGTAGACG 57.972 50.000 0.00 0.00 46.33 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.