Multiple sequence alignment - TraesCS7D01G196600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G196600 chr7D 100.000 3692 0 0 561 4252 153301686 153297995 0.000000e+00 6818.0
1 TraesCS7D01G196600 chr7D 100.000 53 0 0 1 53 153302246 153302194 9.730000e-17 99.0
2 TraesCS7D01G196600 chr7B 88.264 2275 140 59 1905 4137 115240974 115238785 0.000000e+00 2604.0
3 TraesCS7D01G196600 chr7B 90.890 1405 60 23 561 1906 115242400 115241005 0.000000e+00 1823.0
4 TraesCS7D01G196600 chr7B 96.591 88 1 2 4165 4252 115238812 115238727 1.230000e-30 145.0
5 TraesCS7D01G196600 chr7B 100.000 53 0 0 1 53 115242577 115242525 9.730000e-17 99.0
6 TraesCS7D01G196600 chr7A 86.766 1549 110 54 1905 3421 154388460 154386975 0.000000e+00 1637.0
7 TraesCS7D01G196600 chr7A 87.296 1409 95 28 561 1906 154389884 154388497 0.000000e+00 1533.0
8 TraesCS7D01G196600 chr7A 92.174 345 17 7 3780 4121 154386374 154386037 2.970000e-131 479.0
9 TraesCS7D01G196600 chr7A 83.005 406 28 19 3417 3782 154386888 154386484 3.170000e-86 329.0
10 TraesCS7D01G196600 chr7A 96.774 93 2 1 4160 4252 154386051 154385960 2.050000e-33 154.0
11 TraesCS7D01G196600 chr7A 100.000 45 0 0 9 53 154390053 154390009 2.720000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G196600 chr7D 153297995 153302246 4251 True 3458.50 6818 100.00000 1 4252 2 chr7D.!!$R1 4251
1 TraesCS7D01G196600 chr7B 115238727 115242577 3850 True 1167.75 2604 93.93625 1 4252 4 chr7B.!!$R1 4251
2 TraesCS7D01G196600 chr7A 154385960 154390053 4093 True 702.70 1637 91.00250 9 4252 6 chr7A.!!$R1 4243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 718 0.107654 GTAATTGCTCGAGGCCTGGT 60.108 55.0 12.00 0.00 40.92 4.00 F
705 719 0.178068 TAATTGCTCGAGGCCTGGTC 59.822 55.0 12.00 6.40 40.92 4.02 F
2417 2538 0.033228 CGGATTTGGCCAAAACTGCA 59.967 50.0 33.43 11.63 33.56 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1622 1.198713 CATGGCTCTCACCTGGTACT 58.801 55.000 0.0 0.0 0.0 2.73 R
2596 2717 1.546773 CCCCCAAACCAGTCGATCAAA 60.547 52.381 0.0 0.0 0.0 2.69 R
4165 4564 0.681564 TCCCCACGCTTCTCTCTCTC 60.682 60.000 0.0 0.0 0.0 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
619 620 1.127766 CACGCGGTTTGATCGAATTGA 59.872 47.619 12.47 0.00 0.00 2.57
664 665 4.404715 TGCTGTTGGGTAAGGTATCTACTC 59.595 45.833 0.00 0.00 0.00 2.59
702 716 2.890808 TAGTAATTGCTCGAGGCCTG 57.109 50.000 12.00 2.19 40.92 4.85
703 717 0.179000 AGTAATTGCTCGAGGCCTGG 59.821 55.000 12.00 10.16 40.92 4.45
704 718 0.107654 GTAATTGCTCGAGGCCTGGT 60.108 55.000 12.00 0.00 40.92 4.00
705 719 0.178068 TAATTGCTCGAGGCCTGGTC 59.822 55.000 12.00 6.40 40.92 4.02
715 729 1.564348 GAGGCCTGGTCTGGGAAATTA 59.436 52.381 12.00 0.00 0.00 1.40
724 738 3.949113 GGTCTGGGAAATTATTGCGGTAA 59.051 43.478 0.00 0.00 0.00 2.85
771 797 9.175312 TCTACTTTGTAGACGTCTGAGATAATT 57.825 33.333 28.12 10.89 0.00 1.40
796 827 1.300931 GCGGTCAGCTGTCAGACAA 60.301 57.895 14.67 0.00 44.04 3.18
804 835 0.249489 GCTGTCAGACAACCGAGTGT 60.249 55.000 4.41 0.00 0.00 3.55
996 1048 0.322277 ACATGCTCTGCTGGGAAGTG 60.322 55.000 0.00 0.00 0.00 3.16
1007 1059 4.922206 TGCTGGGAAGTGATGAAAATAGT 58.078 39.130 0.00 0.00 0.00 2.12
1099 1152 4.873827 CGACTCCGAAATAAGAAAATCCCA 59.126 41.667 0.00 0.00 38.22 4.37
1102 1155 6.663734 ACTCCGAAATAAGAAAATCCCAGAT 58.336 36.000 0.00 0.00 0.00 2.90
1103 1156 7.802117 ACTCCGAAATAAGAAAATCCCAGATA 58.198 34.615 0.00 0.00 0.00 1.98
1105 1158 8.446599 TCCGAAATAAGAAAATCCCAGATAAC 57.553 34.615 0.00 0.00 0.00 1.89
1188 1262 3.393426 AGATGATTCCACTTGCCCATT 57.607 42.857 0.00 0.00 0.00 3.16
1209 1283 1.546923 GGTTATTTTCGGTGGTTGGGG 59.453 52.381 0.00 0.00 0.00 4.96
1210 1284 1.067425 GTTATTTTCGGTGGTTGGGGC 60.067 52.381 0.00 0.00 0.00 5.80
1255 1329 1.000955 CGCCATCCCCAGTATCTGTAC 59.999 57.143 0.00 0.00 0.00 2.90
1395 1469 0.785979 GCCATTTTCTTTGCAGCACG 59.214 50.000 0.00 0.00 0.00 5.34
1422 1496 0.872021 GTGATCTAAGTGGCGCTCCG 60.872 60.000 7.64 0.00 34.14 4.63
1434 1508 0.524414 GCGCTCCGTTTGGGTAATTT 59.476 50.000 0.00 0.00 37.00 1.82
1452 1526 7.361799 GGGTAATTTCTAATTCTCGCACTTTGT 60.362 37.037 0.00 0.00 0.00 2.83
1512 1586 2.615912 GCTGATCCAGTTCCATGCTTAC 59.384 50.000 0.00 0.00 33.43 2.34
1548 1622 8.432013 AGCAATGTAGTTTCATATAGTGATGGA 58.568 33.333 0.00 0.00 36.54 3.41
1749 1823 8.908786 AGGTAATAACAACATACATCCATCAG 57.091 34.615 0.00 0.00 0.00 2.90
1782 1856 8.754991 TTGTTCACTTTCTGTTTATTTCCCTA 57.245 30.769 0.00 0.00 0.00 3.53
1828 1905 7.147320 TGGCTGAATTTCAATCCTCTATTCCTA 60.147 37.037 14.68 0.00 0.00 2.94
1862 1939 9.216117 TCTTCAAATTTAGTACTAGGCTTGTTC 57.784 33.333 6.96 2.00 0.00 3.18
1896 1974 7.363268 GGAATCATCATTACCTTGTGCTTTCTT 60.363 37.037 0.00 0.00 0.00 2.52
1906 1984 5.529800 ACCTTGTGCTTTCTTACGTTTACAT 59.470 36.000 0.00 0.00 0.00 2.29
1946 2063 5.882557 CCACTGCCAGTTAGTGATTCTAATT 59.117 40.000 0.00 0.00 46.52 1.40
2073 2193 6.982141 TGTTAGCCTCCATAGTTGTAATAACG 59.018 38.462 0.00 0.00 0.00 3.18
2115 2236 0.721154 TCTGCTCTAATGCGCAAACG 59.279 50.000 17.11 5.39 44.07 3.60
2131 2252 3.701241 CAAACGTTTTTGCTTGAGCCTA 58.299 40.909 11.66 0.00 41.18 3.93
2154 2275 4.284378 CAAGCTATGCCTCTTAAAGCAC 57.716 45.455 0.00 0.00 42.84 4.40
2319 2440 7.660617 AGATACCTCTATGATGTGCAATTCTTG 59.339 37.037 0.00 0.00 0.00 3.02
2417 2538 0.033228 CGGATTTGGCCAAAACTGCA 59.967 50.000 33.43 11.63 33.56 4.41
2459 2580 9.236006 CCTGAAATGGAGGGTAAAGATATATTG 57.764 37.037 0.00 0.00 0.00 1.90
2563 2684 2.676748 TGGCCAAAGAACCATCACTTT 58.323 42.857 0.61 0.00 36.89 2.66
2661 2782 7.500992 TCACAGTATCTTGATTATGGAAGGTC 58.499 38.462 0.00 0.00 0.00 3.85
2674 2797 4.139859 TGGAAGGTCAGTTACACGAAAA 57.860 40.909 0.00 0.00 0.00 2.29
2687 2810 7.696453 CAGTTACACGAAAACTTTCAAATCTGT 59.304 33.333 3.28 0.00 34.99 3.41
2688 2811 8.885722 AGTTACACGAAAACTTTCAAATCTGTA 58.114 29.630 3.28 0.00 37.01 2.74
2691 2814 8.560576 ACACGAAAACTTTCAAATCTGTATTG 57.439 30.769 3.28 0.00 37.01 1.90
2692 2815 8.402472 ACACGAAAACTTTCAAATCTGTATTGA 58.598 29.630 3.28 0.00 37.01 2.57
2693 2816 8.682016 CACGAAAACTTTCAAATCTGTATTGAC 58.318 33.333 3.28 0.00 36.57 3.18
2694 2817 8.402472 ACGAAAACTTTCAAATCTGTATTGACA 58.598 29.630 3.28 0.00 36.57 3.58
2695 2818 9.232082 CGAAAACTTTCAAATCTGTATTGACAA 57.768 29.630 3.28 0.00 36.57 3.18
2710 2836 7.358830 TGTATTGACAACATACACACACAATG 58.641 34.615 0.00 0.00 30.68 2.82
2727 2853 5.049167 CACAATGTGTTTGTAGTGCCAATT 58.951 37.500 5.00 0.00 46.90 2.32
2731 2857 7.930865 ACAATGTGTTTGTAGTGCCAATTTATT 59.069 29.630 0.00 0.00 46.75 1.40
2732 2858 8.772705 CAATGTGTTTGTAGTGCCAATTTATTT 58.227 29.630 0.00 0.00 0.00 1.40
2736 2862 6.074088 TGTTTGTAGTGCCAATTTATTTTGCG 60.074 34.615 0.00 0.00 0.00 4.85
2751 2877 1.473258 TTGCGGATCCCCATTTTGAG 58.527 50.000 6.06 0.00 0.00 3.02
2754 2880 1.696063 CGGATCCCCATTTTGAGCAT 58.304 50.000 6.06 0.00 0.00 3.79
2757 2883 3.565307 GGATCCCCATTTTGAGCATGTA 58.435 45.455 0.00 0.00 0.00 2.29
2764 2890 5.163519 CCCCATTTTGAGCATGTACCTTAAG 60.164 44.000 0.00 0.00 0.00 1.85
2770 2896 8.856153 TTTTGAGCATGTACCTTAAGATACAA 57.144 30.769 13.75 0.00 35.05 2.41
2797 2923 0.639943 TATACAGGGACCAGGGCTCA 59.360 55.000 0.00 0.00 0.00 4.26
2811 2937 1.555075 GGGCTCAGTGATGTCCTTGTA 59.445 52.381 0.00 0.00 0.00 2.41
2833 2959 0.171679 TGCGGAATGCTGCTGAAATG 59.828 50.000 5.96 0.00 46.76 2.32
2843 2969 3.067601 TGCTGCTGAAATGCATATCCTTG 59.932 43.478 0.00 0.00 42.48 3.61
2853 2979 3.493699 ATGCATATCCTTGGCATGTTTGC 60.494 43.478 0.00 0.00 45.80 3.68
2875 3001 6.462113 GCGTATGCTTTCTGAAAGACGTCC 62.462 50.000 29.14 15.65 40.06 4.79
2901 3027 9.817809 CAAACTGTACATACTGTAATGACCTAT 57.182 33.333 0.00 0.00 37.38 2.57
2989 3115 0.662970 GCTGTCGATGATCGCCTCTC 60.663 60.000 10.45 0.00 40.21 3.20
2993 3119 2.429907 GATGATCGCCTCTCGCCG 60.430 66.667 0.00 0.00 38.27 6.46
3027 3153 2.746279 TATGGTTTGGGCATAGTGGG 57.254 50.000 0.00 0.00 0.00 4.61
3028 3154 0.032217 ATGGTTTGGGCATAGTGGGG 60.032 55.000 0.00 0.00 0.00 4.96
3048 3174 0.251354 CAGGATGCTGTAGTGTGGCT 59.749 55.000 5.98 0.00 0.00 4.75
3049 3175 0.251354 AGGATGCTGTAGTGTGGCTG 59.749 55.000 0.00 0.00 0.00 4.85
3050 3176 0.036010 GGATGCTGTAGTGTGGCTGT 60.036 55.000 0.00 0.00 0.00 4.40
3051 3177 1.363744 GATGCTGTAGTGTGGCTGTC 58.636 55.000 0.00 0.00 0.00 3.51
3052 3178 0.390340 ATGCTGTAGTGTGGCTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
3053 3179 1.006102 GCTGTAGTGTGGCTGTCGT 60.006 57.895 0.00 0.00 0.00 4.34
3054 3180 1.009389 GCTGTAGTGTGGCTGTCGTC 61.009 60.000 0.00 0.00 0.00 4.20
3055 3181 0.313987 CTGTAGTGTGGCTGTCGTCA 59.686 55.000 0.00 0.00 0.00 4.35
3056 3182 0.747852 TGTAGTGTGGCTGTCGTCAA 59.252 50.000 0.00 0.00 0.00 3.18
3057 3183 1.137513 GTAGTGTGGCTGTCGTCAAC 58.862 55.000 0.00 0.00 0.00 3.18
3058 3184 0.318360 TAGTGTGGCTGTCGTCAACG 60.318 55.000 0.00 0.00 41.45 4.10
3059 3185 2.279851 TGTGGCTGTCGTCAACGG 60.280 61.111 2.31 0.00 40.29 4.44
3066 3192 3.231501 GTCGTCAACGGCAGTGTC 58.768 61.111 1.69 0.00 44.43 3.67
3067 3193 1.590525 GTCGTCAACGGCAGTGTCA 60.591 57.895 1.69 0.00 44.43 3.58
3068 3194 0.944311 GTCGTCAACGGCAGTGTCAT 60.944 55.000 1.69 0.00 44.43 3.06
3069 3195 0.666274 TCGTCAACGGCAGTGTCATC 60.666 55.000 2.31 0.00 40.29 2.92
3070 3196 0.943835 CGTCAACGGCAGTGTCATCA 60.944 55.000 0.00 0.00 35.37 3.07
3071 3197 0.792640 GTCAACGGCAGTGTCATCAG 59.207 55.000 0.00 0.00 0.00 2.90
3072 3198 0.392706 TCAACGGCAGTGTCATCAGT 59.607 50.000 0.00 0.00 0.00 3.41
3073 3199 0.514255 CAACGGCAGTGTCATCAGTG 59.486 55.000 0.00 0.00 45.00 3.66
3078 3204 1.543208 GGCAGTGTCATCAGTGGTTCA 60.543 52.381 0.00 0.00 43.12 3.18
3081 3207 3.304257 GCAGTGTCATCAGTGGTTCAAAG 60.304 47.826 5.42 0.00 43.12 2.77
3090 3216 0.041576 GTGGTTCAAAGGCGTCGTTC 60.042 55.000 0.00 0.00 0.00 3.95
3100 3226 1.742268 AGGCGTCGTTCTAGTAGGAAC 59.258 52.381 0.00 0.60 41.31 3.62
3102 3228 2.163211 GGCGTCGTTCTAGTAGGAACTT 59.837 50.000 0.00 0.00 42.20 2.66
3108 3234 7.301054 CGTCGTTCTAGTAGGAACTTTTAAGA 58.699 38.462 0.00 0.00 42.20 2.10
3109 3235 7.967303 CGTCGTTCTAGTAGGAACTTTTAAGAT 59.033 37.037 0.00 0.00 42.20 2.40
3138 3264 1.712000 AAAGGGCAGGGTTACGGTGT 61.712 55.000 0.00 0.00 0.00 4.16
3151 3277 4.571984 GGTTACGGTGTAATGGTGGTATTC 59.428 45.833 0.00 0.00 0.00 1.75
3159 3285 6.207810 GGTGTAATGGTGGTATTCTGTTTTGA 59.792 38.462 0.00 0.00 0.00 2.69
3180 3306 8.795786 TTTGACAGTGTAAAGCAACATTTATC 57.204 30.769 0.00 0.00 0.00 1.75
3181 3307 7.503521 TGACAGTGTAAAGCAACATTTATCA 57.496 32.000 0.00 0.00 0.00 2.15
3184 3310 6.017440 ACAGTGTAAAGCAACATTTATCACGT 60.017 34.615 0.00 0.00 34.92 4.49
3186 3312 7.477422 CAGTGTAAAGCAACATTTATCACGTAC 59.523 37.037 0.00 0.00 34.92 3.67
3189 3315 8.865978 TGTAAAGCAACATTTATCACGTACTAG 58.134 33.333 0.00 0.00 0.00 2.57
3190 3316 7.900782 AAAGCAACATTTATCACGTACTAGT 57.099 32.000 0.00 0.00 0.00 2.57
3191 3317 8.991243 AAAGCAACATTTATCACGTACTAGTA 57.009 30.769 0.00 0.00 0.00 1.82
3237 3385 6.281405 AGATGGCGTATAAAATCGAGTTTCT 58.719 36.000 14.90 7.80 0.00 2.52
3248 3396 6.727824 AAATCGAGTTTCTGTGAGGTAATG 57.272 37.500 0.00 0.00 0.00 1.90
3287 3435 1.068402 TGAAAGCATGCATTGTGACGG 60.068 47.619 21.98 0.00 0.00 4.79
3292 3440 2.093711 AGCATGCATTGTGACGGTAGTA 60.094 45.455 21.98 0.00 0.00 1.82
3296 3450 4.100707 TGCATTGTGACGGTAGTACTAC 57.899 45.455 22.53 22.53 35.40 2.73
3299 3453 5.591472 TGCATTGTGACGGTAGTACTACTAT 59.409 40.000 27.71 18.09 32.65 2.12
3330 3484 4.302455 ACTAGTAGAAATAGCAGCGCATG 58.698 43.478 11.47 6.31 0.00 4.06
3356 3510 6.255887 GTTCTATGGAAGAGGTGATTTACACG 59.744 42.308 0.00 0.00 39.96 4.49
3421 3575 3.013276 TGTTCGAGCTGAGTTGTACTG 57.987 47.619 0.00 0.00 0.00 2.74
3524 3770 3.930634 AACCAGATTTTTCTCTGCTGC 57.069 42.857 0.00 0.00 41.12 5.25
3576 3846 5.838531 TTGTTACCAATTCAAAAGGTCGT 57.161 34.783 0.00 0.00 36.87 4.34
3588 3858 1.254026 AAGGTCGTGAATCGGACTCA 58.746 50.000 4.66 0.00 40.32 3.41
3606 3876 3.582208 ACTCAAACTCAGCTGGATCTCTT 59.418 43.478 15.13 0.00 0.00 2.85
3623 3893 7.281774 TGGATCTCTTAGCAGAAAATGTGAATC 59.718 37.037 0.00 0.00 0.00 2.52
3653 3937 9.781834 TTACACAGTTTGAAAGTAAAGTGATTG 57.218 29.630 11.69 4.77 41.36 2.67
3769 4053 4.813697 GCTCATGAAGAGTGAATTAGGGAC 59.186 45.833 0.00 0.00 46.47 4.46
3811 4207 5.366768 ACAGAAGCTAAGATAGGCACCAATA 59.633 40.000 0.00 0.00 0.00 1.90
3845 4241 3.947910 ACCGTAAAGAACATCGGAGAA 57.052 42.857 9.37 0.00 44.86 2.87
3978 4374 3.721035 TGAGATCATCAACGCCTACATG 58.279 45.455 0.00 0.00 34.02 3.21
4035 4431 0.824109 TTCACCGGAGCAGGTAGATG 59.176 55.000 9.46 0.00 43.89 2.90
4123 4522 7.636150 AAAAATGAGAGAGAGAGAGAGAGAG 57.364 40.000 0.00 0.00 0.00 3.20
4124 4523 6.566079 AAATGAGAGAGAGAGAGAGAGAGA 57.434 41.667 0.00 0.00 0.00 3.10
4125 4524 5.804944 ATGAGAGAGAGAGAGAGAGAGAG 57.195 47.826 0.00 0.00 0.00 3.20
4126 4525 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
4127 4526 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
4128 4527 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
4129 4528 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4130 4529 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4131 4530 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4132 4531 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4133 4532 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4134 4533 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4135 4534 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4136 4535 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4137 4536 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4138 4537 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4139 4538 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4140 4539 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4141 4540 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4142 4541 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4143 4542 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4144 4543 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4145 4544 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4146 4545 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4147 4546 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4148 4547 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4149 4548 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4150 4549 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4151 4550 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4152 4551 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4153 4552 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4154 4553 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4155 4554 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4156 4555 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4157 4556 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4158 4557 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4159 4558 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4160 4559 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4161 4560 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4162 4561 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4163 4562 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4164 4563 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4165 4564 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4166 4565 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4167 4566 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4168 4567 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
619 620 3.334583 TTCTGAACTAGCGGCAAGAAT 57.665 42.857 1.45 0.00 0.00 2.40
664 665 5.607119 ACTAAGTACTTCAATTGCGGTTG 57.393 39.130 12.39 0.00 0.00 3.77
702 716 2.375146 ACCGCAATAATTTCCCAGACC 58.625 47.619 0.00 0.00 0.00 3.85
703 717 5.767816 ATTACCGCAATAATTTCCCAGAC 57.232 39.130 0.00 0.00 0.00 3.51
704 718 6.406400 CCAAATTACCGCAATAATTTCCCAGA 60.406 38.462 10.52 0.00 40.94 3.86
705 719 5.752955 CCAAATTACCGCAATAATTTCCCAG 59.247 40.000 10.52 2.93 40.94 4.45
715 729 4.709397 TCCAATTCTCCAAATTACCGCAAT 59.291 37.500 0.00 0.00 0.00 3.56
724 738 3.479866 AAGGGCTCCAATTCTCCAAAT 57.520 42.857 0.00 0.00 0.00 2.32
786 812 1.603172 GGACACTCGGTTGTCTGACAG 60.603 57.143 10.77 0.00 44.63 3.51
792 823 2.798847 GTTAGTTGGACACTCGGTTGTC 59.201 50.000 8.37 8.37 44.53 3.18
796 827 2.313317 TGAGTTAGTTGGACACTCGGT 58.687 47.619 0.00 0.00 39.97 4.69
804 835 6.971726 TCTGAAGTAGTTGAGTTAGTTGGA 57.028 37.500 0.00 0.00 0.00 3.53
864 896 0.903454 TTGGTCTCGGGGAACTCCTC 60.903 60.000 0.00 0.00 35.95 3.71
873 905 2.009774 CAACTTAGCATTGGTCTCGGG 58.990 52.381 0.00 0.00 0.00 5.14
996 1048 8.461222 TGTCACATGATTGGAACTATTTTCATC 58.539 33.333 0.00 0.00 0.00 2.92
1007 1059 6.005823 AGATTGAGTTGTCACATGATTGGAA 58.994 36.000 0.00 0.00 30.10 3.53
1095 1148 6.022107 TGTTAGCTACCTAGTTATCTGGGA 57.978 41.667 10.00 0.00 43.79 4.37
1099 1152 7.266400 GCTGTTTGTTAGCTACCTAGTTATCT 58.734 38.462 0.00 0.00 38.14 1.98
1102 1155 5.404946 CGCTGTTTGTTAGCTACCTAGTTA 58.595 41.667 0.00 0.00 39.00 2.24
1103 1156 4.243270 CGCTGTTTGTTAGCTACCTAGTT 58.757 43.478 0.00 0.00 39.00 2.24
1105 1158 2.603560 GCGCTGTTTGTTAGCTACCTAG 59.396 50.000 0.00 0.00 39.00 3.02
1108 1163 1.153353 TGCGCTGTTTGTTAGCTACC 58.847 50.000 9.73 0.00 39.00 3.18
1188 1262 2.240279 CCCAACCACCGAAAATAACCA 58.760 47.619 0.00 0.00 0.00 3.67
1255 1329 6.940739 TCCAGTTCTAAGATCTCTTTCCTTG 58.059 40.000 0.00 0.00 37.40 3.61
1321 1395 6.346919 GGCACTAATAATGCGATACTGAAGTG 60.347 42.308 0.00 0.00 44.37 3.16
1395 1469 4.387256 GCGCCACTTAGATCACTTGATATC 59.613 45.833 0.00 0.00 34.37 1.63
1422 1496 6.745907 GTGCGAGAATTAGAAATTACCCAAAC 59.254 38.462 0.00 0.00 0.00 2.93
1434 1508 7.275779 GTGATTAGACAAAGTGCGAGAATTAGA 59.724 37.037 0.00 0.00 0.00 2.10
1452 1526 7.394016 TCTAAGACAAAGCATTGGTGATTAGA 58.606 34.615 6.62 10.20 41.01 2.10
1548 1622 1.198713 CATGGCTCTCACCTGGTACT 58.801 55.000 0.00 0.00 0.00 2.73
1782 1856 5.301805 AGCCAAAGTTAAGCAAACATGTAGT 59.698 36.000 0.00 0.00 40.83 2.73
1862 1939 7.503566 ACAAGGTAATGATGATTCCATGGTTAG 59.496 37.037 12.58 0.00 32.09 2.34
1896 1974 7.403421 CAACAAAGAAGTGTCATGTAAACGTA 58.597 34.615 0.00 0.00 0.00 3.57
1956 2073 5.710099 TCCTTTCTACCAAATTGCGAGAAAT 59.290 36.000 15.88 0.00 36.01 2.17
1963 2080 7.012421 CCACTATACTCCTTTCTACCAAATTGC 59.988 40.741 0.00 0.00 0.00 3.56
1964 2081 7.499232 CCCACTATACTCCTTTCTACCAAATTG 59.501 40.741 0.00 0.00 0.00 2.32
2073 2193 6.834969 AGATAGACCCAGTAGACCTTTAGTTC 59.165 42.308 0.00 0.00 0.00 3.01
2081 2201 2.888414 GAGCAGATAGACCCAGTAGACC 59.112 54.545 0.00 0.00 0.00 3.85
2319 2440 6.503524 TCAGGTTGCAATTACAGTTCTTTTC 58.496 36.000 0.59 0.00 0.00 2.29
2417 2538 2.733956 TCAGGGTGTTTGCTGAAAAGT 58.266 42.857 0.00 0.00 0.00 2.66
2459 2580 4.694037 GGCCATATATACAAGGAAACGGTC 59.306 45.833 0.00 0.00 0.00 4.79
2563 2684 8.615878 TTTCGATTTCCAGTTTAAAGATCTCA 57.384 30.769 0.00 0.00 0.00 3.27
2596 2717 1.546773 CCCCCAAACCAGTCGATCAAA 60.547 52.381 0.00 0.00 0.00 2.69
2661 2782 7.696453 ACAGATTTGAAAGTTTTCGTGTAACTG 59.304 33.333 0.00 0.00 40.01 3.16
2687 2810 7.503521 ACATTGTGTGTGTATGTTGTCAATA 57.496 32.000 0.00 0.00 40.28 1.90
2688 2811 6.389830 ACATTGTGTGTGTATGTTGTCAAT 57.610 33.333 0.00 0.00 40.28 2.57
2710 2836 7.068955 GCAAAATAAATTGGCACTACAAACAC 58.931 34.615 0.00 0.00 33.48 3.32
2713 2839 5.406780 CCGCAAAATAAATTGGCACTACAAA 59.593 36.000 0.00 0.00 33.48 2.83
2727 2853 4.467795 TCAAAATGGGGATCCGCAAAATAA 59.532 37.500 32.55 16.85 42.05 1.40
2731 2857 1.824230 CTCAAAATGGGGATCCGCAAA 59.176 47.619 32.55 13.27 42.05 3.68
2732 2858 1.473258 CTCAAAATGGGGATCCGCAA 58.527 50.000 32.55 16.54 42.05 4.85
2736 2862 2.391678 ACATGCTCAAAATGGGGATCC 58.608 47.619 1.92 1.92 0.00 3.36
2764 2890 9.349713 TGGTCCCTGTATAAATCAAATTGTATC 57.650 33.333 0.00 0.00 0.00 2.24
2770 2896 5.705400 CCCTGGTCCCTGTATAAATCAAAT 58.295 41.667 0.00 0.00 0.00 2.32
2781 2907 2.608988 CTGAGCCCTGGTCCCTGT 60.609 66.667 0.00 0.00 0.00 4.00
2797 2923 2.612972 CCGCACTTACAAGGACATCACT 60.613 50.000 0.00 0.00 0.00 3.41
2811 2937 0.890542 TTCAGCAGCATTCCGCACTT 60.891 50.000 0.00 0.00 46.13 3.16
2833 2959 2.476821 GCAAACATGCCAAGGATATGC 58.523 47.619 0.00 0.00 0.00 3.14
2853 2979 3.060895 GGACGTCTTTCAGAAAGCATACG 59.939 47.826 23.90 23.90 40.17 3.06
2963 3089 0.662970 GATCATCGACAGCGGCTCTC 60.663 60.000 0.00 0.00 38.28 3.20
2967 3093 3.696426 GCGATCATCGACAGCGGC 61.696 66.667 12.38 0.00 43.74 6.53
2993 3119 0.249657 CCATAAGCCTCTCCGACTGC 60.250 60.000 0.00 0.00 0.00 4.40
2997 3123 1.209504 CCAAACCATAAGCCTCTCCGA 59.790 52.381 0.00 0.00 0.00 4.55
2999 3125 2.024306 GCCCAAACCATAAGCCTCTCC 61.024 57.143 0.00 0.00 0.00 3.71
3000 3126 1.340991 TGCCCAAACCATAAGCCTCTC 60.341 52.381 0.00 0.00 0.00 3.20
3001 3127 0.704076 TGCCCAAACCATAAGCCTCT 59.296 50.000 0.00 0.00 0.00 3.69
3002 3128 1.780503 ATGCCCAAACCATAAGCCTC 58.219 50.000 0.00 0.00 0.00 4.70
3003 3129 2.244769 ACTATGCCCAAACCATAAGCCT 59.755 45.455 0.00 0.00 0.00 4.58
3027 3153 0.745845 CCACACTACAGCATCCTGCC 60.746 60.000 0.00 0.00 46.52 4.85
3028 3154 1.372087 GCCACACTACAGCATCCTGC 61.372 60.000 0.00 0.00 45.46 4.85
3041 3167 2.594962 CCGTTGACGACAGCCACAC 61.595 63.158 4.91 0.00 43.02 3.82
3048 3174 1.590525 GACACTGCCGTTGACGACA 60.591 57.895 4.91 0.00 43.02 4.35
3049 3175 0.944311 ATGACACTGCCGTTGACGAC 60.944 55.000 4.91 0.00 43.02 4.34
3050 3176 0.666274 GATGACACTGCCGTTGACGA 60.666 55.000 4.91 0.00 43.02 4.20
3051 3177 0.943835 TGATGACACTGCCGTTGACG 60.944 55.000 0.00 0.00 39.44 4.35
3052 3178 0.792640 CTGATGACACTGCCGTTGAC 59.207 55.000 0.00 0.00 0.00 3.18
3053 3179 0.392706 ACTGATGACACTGCCGTTGA 59.607 50.000 0.00 0.00 0.00 3.18
3054 3180 0.514255 CACTGATGACACTGCCGTTG 59.486 55.000 0.00 0.00 0.00 4.10
3055 3181 0.603707 CCACTGATGACACTGCCGTT 60.604 55.000 0.00 0.00 0.00 4.44
3056 3182 1.004560 CCACTGATGACACTGCCGT 60.005 57.895 0.00 0.00 0.00 5.68
3057 3183 0.603707 AACCACTGATGACACTGCCG 60.604 55.000 0.00 0.00 0.00 5.69
3058 3184 1.160137 GAACCACTGATGACACTGCC 58.840 55.000 0.00 0.00 0.00 4.85
3059 3185 1.882912 TGAACCACTGATGACACTGC 58.117 50.000 0.00 0.00 0.00 4.40
3060 3186 3.251729 CCTTTGAACCACTGATGACACTG 59.748 47.826 0.00 0.00 0.00 3.66
3061 3187 3.480470 CCTTTGAACCACTGATGACACT 58.520 45.455 0.00 0.00 0.00 3.55
3062 3188 2.030805 GCCTTTGAACCACTGATGACAC 60.031 50.000 0.00 0.00 0.00 3.67
3063 3189 2.229792 GCCTTTGAACCACTGATGACA 58.770 47.619 0.00 0.00 0.00 3.58
3064 3190 1.197721 CGCCTTTGAACCACTGATGAC 59.802 52.381 0.00 0.00 0.00 3.06
3065 3191 1.202758 ACGCCTTTGAACCACTGATGA 60.203 47.619 0.00 0.00 0.00 2.92
3066 3192 1.197721 GACGCCTTTGAACCACTGATG 59.802 52.381 0.00 0.00 0.00 3.07
3067 3193 1.523758 GACGCCTTTGAACCACTGAT 58.476 50.000 0.00 0.00 0.00 2.90
3068 3194 0.878523 CGACGCCTTTGAACCACTGA 60.879 55.000 0.00 0.00 0.00 3.41
3069 3195 1.157870 ACGACGCCTTTGAACCACTG 61.158 55.000 0.00 0.00 0.00 3.66
3070 3196 0.463116 AACGACGCCTTTGAACCACT 60.463 50.000 0.00 0.00 0.00 4.00
3071 3197 0.041576 GAACGACGCCTTTGAACCAC 60.042 55.000 0.00 0.00 0.00 4.16
3072 3198 0.179067 AGAACGACGCCTTTGAACCA 60.179 50.000 0.00 0.00 0.00 3.67
3073 3199 1.725164 CTAGAACGACGCCTTTGAACC 59.275 52.381 0.00 0.00 0.00 3.62
3078 3204 2.440409 TCCTACTAGAACGACGCCTTT 58.560 47.619 0.00 0.00 0.00 3.11
3081 3207 2.185867 GTTCCTACTAGAACGACGCC 57.814 55.000 0.00 0.00 37.04 5.68
3100 3226 8.522830 TGCCCTTTGAGTTTGATATCTTAAAAG 58.477 33.333 3.98 5.82 0.00 2.27
3102 3228 7.122650 CCTGCCCTTTGAGTTTGATATCTTAAA 59.877 37.037 3.98 0.00 0.00 1.52
3108 3234 3.011708 ACCCTGCCCTTTGAGTTTGATAT 59.988 43.478 0.00 0.00 0.00 1.63
3109 3235 2.378547 ACCCTGCCCTTTGAGTTTGATA 59.621 45.455 0.00 0.00 0.00 2.15
3110 3236 1.147817 ACCCTGCCCTTTGAGTTTGAT 59.852 47.619 0.00 0.00 0.00 2.57
3111 3237 0.555769 ACCCTGCCCTTTGAGTTTGA 59.444 50.000 0.00 0.00 0.00 2.69
3113 3239 2.594131 GTAACCCTGCCCTTTGAGTTT 58.406 47.619 0.00 0.00 0.00 2.66
3116 3242 0.676782 CCGTAACCCTGCCCTTTGAG 60.677 60.000 0.00 0.00 0.00 3.02
3118 3244 1.074248 ACCGTAACCCTGCCCTTTG 59.926 57.895 0.00 0.00 0.00 2.77
3119 3245 1.074248 CACCGTAACCCTGCCCTTT 59.926 57.895 0.00 0.00 0.00 3.11
3120 3246 0.837260 TACACCGTAACCCTGCCCTT 60.837 55.000 0.00 0.00 0.00 3.95
3121 3247 0.837260 TTACACCGTAACCCTGCCCT 60.837 55.000 0.00 0.00 0.00 5.19
3159 3285 6.017440 ACGTGATAAATGTTGCTTTACACTGT 60.017 34.615 0.00 0.00 0.00 3.55
3180 3306 7.896274 GCAACATGTAACAATTACTAGTACGTG 59.104 37.037 0.91 6.25 37.06 4.49
3181 3307 7.599621 TGCAACATGTAACAATTACTAGTACGT 59.400 33.333 0.91 0.00 37.06 3.57
3184 3310 7.878644 TGGTGCAACATGTAACAATTACTAGTA 59.121 33.333 0.00 0.00 39.98 1.82
3186 3312 7.139896 TGGTGCAACATGTAACAATTACTAG 57.860 36.000 0.00 0.00 39.98 2.57
3189 3315 6.442952 TCTTGGTGCAACATGTAACAATTAC 58.557 36.000 16.43 0.00 38.89 1.89
3190 3316 6.488344 TCTCTTGGTGCAACATGTAACAATTA 59.512 34.615 16.43 0.00 38.89 1.40
3191 3317 5.301551 TCTCTTGGTGCAACATGTAACAATT 59.698 36.000 16.43 0.00 38.89 2.32
3219 3367 6.530534 ACCTCACAGAAACTCGATTTTATACG 59.469 38.462 0.18 0.00 0.00 3.06
3224 3372 6.934645 TCATTACCTCACAGAAACTCGATTTT 59.065 34.615 0.00 0.00 0.00 1.82
3229 3377 5.230942 ACTTCATTACCTCACAGAAACTCG 58.769 41.667 0.00 0.00 0.00 4.18
3237 3385 4.536090 AGAATGGGACTTCATTACCTCACA 59.464 41.667 0.00 0.00 37.47 3.58
3248 3396 3.614092 TCATCAGCAAGAATGGGACTTC 58.386 45.455 0.00 0.00 0.00 3.01
3277 3425 9.823098 GAATATAGTAGTACTACCGTCACAATG 57.177 37.037 25.97 0.00 36.75 2.82
3313 3467 2.620251 ACCATGCGCTGCTATTTCTA 57.380 45.000 9.73 0.00 0.00 2.10
3314 3468 1.672881 GAACCATGCGCTGCTATTTCT 59.327 47.619 9.73 0.00 0.00 2.52
3315 3469 1.672881 AGAACCATGCGCTGCTATTTC 59.327 47.619 9.73 4.01 0.00 2.17
3316 3470 1.755179 AGAACCATGCGCTGCTATTT 58.245 45.000 9.73 0.00 0.00 1.40
3321 3475 0.815213 TCCATAGAACCATGCGCTGC 60.815 55.000 9.73 0.00 0.00 5.25
3322 3476 1.600957 CTTCCATAGAACCATGCGCTG 59.399 52.381 9.73 4.25 0.00 5.18
3330 3484 6.539103 GTGTAAATCACCTCTTCCATAGAACC 59.461 42.308 0.00 0.00 40.84 3.62
3356 3510 4.862018 CAGAAGGATCAGAACGAAGACTTC 59.138 45.833 5.03 5.03 34.47 3.01
3369 3523 2.125552 CGCGTGCCAGAAGGATCA 60.126 61.111 0.00 0.00 36.89 2.92
3524 3770 2.003658 AACACAAGTTGCAGGCCGTG 62.004 55.000 1.81 0.00 36.39 4.94
3576 3846 2.300152 AGCTGAGTTTGAGTCCGATTCA 59.700 45.455 0.00 0.00 0.00 2.57
3588 3858 3.517100 TGCTAAGAGATCCAGCTGAGTTT 59.483 43.478 17.39 0.00 36.26 2.66
3606 3876 5.940192 AACGTGATTCACATTTTCTGCTA 57.060 34.783 16.61 0.00 33.40 3.49
3623 3893 7.215568 CACTTTACTTTCAAACTGTGTAACGTG 59.784 37.037 0.00 0.00 42.39 4.49
3786 4175 4.286707 TGGTGCCTATCTTAGCTTCTGTA 58.713 43.478 0.00 0.00 0.00 2.74
3787 4176 3.107601 TGGTGCCTATCTTAGCTTCTGT 58.892 45.455 0.00 0.00 0.00 3.41
3811 4207 5.180271 TCTTTACGGTTGTGTTTCTCTGTT 58.820 37.500 0.00 0.00 0.00 3.16
3899 4295 5.762045 AGTATGCAACTGTCAATTTGTCAC 58.238 37.500 0.00 0.00 36.93 3.67
3978 4374 9.305925 GAATTGAAGTGTAATTTGATTGGATCC 57.694 33.333 4.20 4.20 0.00 3.36
4035 4431 1.517694 CTGCATTCGCCATTGGTGC 60.518 57.895 11.54 9.93 37.32 5.01
4114 4513 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4115 4514 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4116 4515 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4117 4516 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4118 4517 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4119 4518 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4120 4519 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4121 4520 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4122 4521 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4123 4522 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4124 4523 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4125 4524 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4126 4525 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4127 4526 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4128 4527 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4129 4528 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4130 4529 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4131 4530 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4132 4531 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4133 4532 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4134 4533 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4135 4534 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4136 4535 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4137 4536 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4138 4537 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4139 4538 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4140 4539 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4141 4540 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4142 4541 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4143 4542 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4144 4543 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4145 4544 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4146 4545 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4147 4546 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4148 4547 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4149 4548 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4150 4549 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4151 4550 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4152 4551 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
4153 4552 5.738783 GCTTCTCTCTCTCTCTCTCTCTCTC 60.739 52.000 0.00 0.00 0.00 3.20
4154 4553 4.100808 GCTTCTCTCTCTCTCTCTCTCTCT 59.899 50.000 0.00 0.00 0.00 3.10
4155 4554 4.376146 GCTTCTCTCTCTCTCTCTCTCTC 58.624 52.174 0.00 0.00 0.00 3.20
4156 4555 3.181471 CGCTTCTCTCTCTCTCTCTCTCT 60.181 52.174 0.00 0.00 0.00 3.10
4157 4556 3.126831 CGCTTCTCTCTCTCTCTCTCTC 58.873 54.545 0.00 0.00 0.00 3.20
4158 4557 2.501723 ACGCTTCTCTCTCTCTCTCTCT 59.498 50.000 0.00 0.00 0.00 3.10
4159 4558 2.609459 CACGCTTCTCTCTCTCTCTCTC 59.391 54.545 0.00 0.00 0.00 3.20
4160 4559 2.632377 CACGCTTCTCTCTCTCTCTCT 58.368 52.381 0.00 0.00 0.00 3.10
4161 4560 1.670811 CCACGCTTCTCTCTCTCTCTC 59.329 57.143 0.00 0.00 0.00 3.20
4162 4561 1.681780 CCCACGCTTCTCTCTCTCTCT 60.682 57.143 0.00 0.00 0.00 3.10
4163 4562 0.738389 CCCACGCTTCTCTCTCTCTC 59.262 60.000 0.00 0.00 0.00 3.20
4164 4563 0.682855 CCCCACGCTTCTCTCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10
4165 4564 0.681564 TCCCCACGCTTCTCTCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
4166 4565 0.682855 CTCCCCACGCTTCTCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10
4167 4566 0.681564 TCTCCCCACGCTTCTCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
4168 4567 0.682855 CTCTCCCCACGCTTCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.