Multiple sequence alignment - TraesCS7D01G196500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G196500 chr7D 100.000 3551 0 0 1 3551 153295490 153299040 0.000000e+00 6558.0
1 TraesCS7D01G196500 chr7A 96.703 1759 55 2 842 2598 154384294 154386051 0.000000e+00 2924.0
2 TraesCS7D01G196500 chr7A 86.502 852 84 14 1 827 154383055 154383900 0.000000e+00 907.0
3 TraesCS7D01G196500 chr7A 92.174 345 17 7 2637 2978 154386037 154386374 2.480000e-131 479.0
4 TraesCS7D01G196500 chr7A 83.005 406 28 19 2976 3341 154386484 154386888 2.640000e-86 329.0
5 TraesCS7D01G196500 chr7A 87.838 222 15 8 3337 3551 154386975 154387191 2.120000e-62 250.0
6 TraesCS7D01G196500 chr7B 96.485 1764 48 5 842 2593 115237051 115238812 0.000000e+00 2902.0
7 TraesCS7D01G196500 chr7B 88.186 948 52 30 2621 3551 115238785 115239689 0.000000e+00 1075.0
8 TraesCS7D01G196500 chr7B 88.721 860 67 15 1 836 115236146 115236999 0.000000e+00 1024.0
9 TraesCS7D01G196500 chr3D 76.882 186 30 9 296 474 58129130 58128951 3.770000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G196500 chr7D 153295490 153299040 3550 False 6558.0 6558 100.000000 1 3551 1 chr7D.!!$F1 3550
1 TraesCS7D01G196500 chr7A 154383055 154387191 4136 False 977.8 2924 89.244400 1 3551 5 chr7A.!!$F1 3550
2 TraesCS7D01G196500 chr7B 115236146 115239689 3543 False 1667.0 2902 91.130667 1 3551 3 chr7B.!!$F1 3550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.885196 TAAGGCCCGAACAACATTGC 59.115 50.0 0.0 0.00 0.00 3.56 F
189 190 0.969149 TGCAGAGGTGATCGAACACT 59.031 50.0 22.9 10.83 40.22 3.55 F
2127 2548 0.178767 TGATGATCCTGGCGAACCTG 59.821 55.0 0.0 0.00 36.63 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2527 1.154205 GGTTCGCCAGGATCATCACG 61.154 60.0 0.00 0.0 37.19 4.35 R
2427 2848 1.115930 CCCACTCCCTCCCGAGTATG 61.116 65.0 0.00 0.0 41.23 2.39 R
3468 4134 0.961019 AAAGCATGCATTGTGACGGT 59.039 45.0 21.98 0.0 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.058124 TGTTCAGAAATGGTCTTGACGAG 58.942 43.478 0.00 0.00 32.70 4.18
94 95 2.986311 GAGGATCGCGGTGCAATTA 58.014 52.632 14.98 0.00 0.00 1.40
172 173 0.885196 TAAGGCCCGAACAACATTGC 59.115 50.000 0.00 0.00 0.00 3.56
189 190 0.969149 TGCAGAGGTGATCGAACACT 59.031 50.000 22.90 10.83 40.22 3.55
269 271 7.928706 ACAAAGTAGTCTTCCATAGCATCATAC 59.071 37.037 0.00 0.00 32.90 2.39
277 292 2.341257 CATAGCATCATACGCCCAGAC 58.659 52.381 0.00 0.00 0.00 3.51
304 319 7.835682 TCAACACTTGATATCCCTTGATTGATT 59.164 33.333 0.00 0.00 34.08 2.57
307 322 6.208204 CACTTGATATCCCTTGATTGATTCCC 59.792 42.308 0.00 0.00 32.18 3.97
329 344 4.070716 CTGAAACTGAGAACATGCTCCTT 58.929 43.478 0.00 0.00 33.95 3.36
356 371 7.694388 CATGTTCTGCATCTTCAATAATTGG 57.306 36.000 0.00 0.00 35.19 3.16
385 400 4.756642 TCATCGCCATTTCATCCTCATAAC 59.243 41.667 0.00 0.00 0.00 1.89
386 401 4.422073 TCGCCATTTCATCCTCATAACT 57.578 40.909 0.00 0.00 0.00 2.24
441 456 4.475345 AGGTGTAGAAGAACTCTGTGTCT 58.525 43.478 0.00 0.00 35.41 3.41
461 476 3.005554 CTGAATCCATCGTGTTTGCTCT 58.994 45.455 0.00 0.00 0.00 4.09
474 489 6.641314 TCGTGTTTGCTCTAGAGTAAGAAAAG 59.359 38.462 20.51 13.31 34.62 2.27
477 492 8.827677 GTGTTTGCTCTAGAGTAAGAAAAGAAA 58.172 33.333 20.51 3.72 34.62 2.52
518 535 2.031258 TTTGACCGAGCACTTGTTGA 57.969 45.000 0.00 0.00 0.00 3.18
521 538 1.891060 GACCGAGCACTTGTTGAGCG 61.891 60.000 0.00 0.00 37.34 5.03
587 615 3.403558 AGGGAAGAAGGGAGGCGC 61.404 66.667 0.00 0.00 0.00 6.53
619 647 1.822186 GTGGGCGTTTGTGTGGAGT 60.822 57.895 0.00 0.00 0.00 3.85
703 731 2.873094 TGAAGACAGTCGACCCTAGA 57.127 50.000 13.01 0.00 0.00 2.43
735 763 6.974622 GCACTTGGATGTCACATTTTTATAGG 59.025 38.462 0.00 0.00 0.00 2.57
741 769 7.339212 TGGATGTCACATTTTTATAGGTTCCAG 59.661 37.037 0.00 0.00 0.00 3.86
745 773 6.833933 GTCACATTTTTATAGGTTCCAGGGAT 59.166 38.462 0.00 0.00 0.00 3.85
756 784 4.591498 AGGTTCCAGGGATTTTGGTTAAAC 59.409 41.667 0.00 0.00 37.02 2.01
831 1192 7.442062 GTGAATGTTTTGGATTTCTGTTGGAAT 59.558 33.333 0.00 0.00 33.53 3.01
838 1199 9.487790 TTTTGGATTTCTGTTGGAATGTATTTC 57.512 29.630 0.00 0.00 33.53 2.17
1185 1594 4.862092 CAGACCATCGAGCGCGCT 62.862 66.667 37.28 37.28 37.46 5.92
1475 1884 2.927437 GCTACAGCGTCGACTACAC 58.073 57.895 14.70 0.22 0.00 2.90
1722 2143 3.134127 GCGGCCATGGTGAACCTC 61.134 66.667 14.67 0.00 36.82 3.85
1749 2170 2.098831 GGCGGAGAACAAGGTACGC 61.099 63.158 0.00 0.00 45.53 4.42
2127 2548 0.178767 TGATGATCCTGGCGAACCTG 59.821 55.000 0.00 0.00 36.63 4.00
2591 3012 0.681564 TCCCCACGCTTCTCTCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
2592 3013 0.682855 CCCCACGCTTCTCTCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10
2593 3014 0.738389 CCCACGCTTCTCTCTCTCTC 59.262 60.000 0.00 0.00 0.00 3.20
2594 3015 1.681780 CCCACGCTTCTCTCTCTCTCT 60.682 57.143 0.00 0.00 0.00 3.10
2595 3016 1.670811 CCACGCTTCTCTCTCTCTCTC 59.329 57.143 0.00 0.00 0.00 3.20
2596 3017 2.632377 CACGCTTCTCTCTCTCTCTCT 58.368 52.381 0.00 0.00 0.00 3.10
2597 3018 2.609459 CACGCTTCTCTCTCTCTCTCTC 59.391 54.545 0.00 0.00 0.00 3.20
2598 3019 2.501723 ACGCTTCTCTCTCTCTCTCTCT 59.498 50.000 0.00 0.00 0.00 3.10
2599 3020 3.126831 CGCTTCTCTCTCTCTCTCTCTC 58.873 54.545 0.00 0.00 0.00 3.20
2600 3021 3.181471 CGCTTCTCTCTCTCTCTCTCTCT 60.181 52.174 0.00 0.00 0.00 3.10
2601 3022 4.376146 GCTTCTCTCTCTCTCTCTCTCTC 58.624 52.174 0.00 0.00 0.00 3.20
2602 3023 4.100808 GCTTCTCTCTCTCTCTCTCTCTCT 59.899 50.000 0.00 0.00 0.00 3.10
2603 3024 5.738783 GCTTCTCTCTCTCTCTCTCTCTCTC 60.739 52.000 0.00 0.00 0.00 3.20
2604 3025 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2605 3026 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2606 3027 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2607 3028 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2608 3029 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2609 3030 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2610 3031 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2611 3032 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2612 3033 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2613 3034 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2614 3035 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2615 3036 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2616 3037 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2617 3038 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2618 3039 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2619 3040 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2620 3041 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2621 3042 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2622 3043 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2623 3044 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2624 3045 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2625 3046 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2626 3047 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2627 3048 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2628 3049 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2629 3050 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2630 3051 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2631 3052 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2632 3053 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2633 3054 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2634 3055 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2635 3056 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2636 3057 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2637 3058 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2638 3059 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2639 3060 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2640 3061 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2641 3062 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2642 3063 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2721 3145 1.517694 CTGCATTCGCCATTGGTGC 60.518 57.895 11.54 9.93 37.32 5.01
2778 3202 9.305925 GAATTGAAGTGTAATTTGATTGGATCC 57.694 33.333 4.20 4.20 0.00 3.36
2857 3281 5.762045 AGTATGCAACTGTCAATTTGTCAC 58.238 37.500 0.00 0.00 36.93 3.67
2945 3369 5.180271 TCTTTACGGTTGTGTTTCTCTGTT 58.820 37.500 0.00 0.00 0.00 3.16
2969 3393 3.107601 TGGTGCCTATCTTAGCTTCTGT 58.892 45.455 0.00 0.00 0.00 3.41
3133 3683 7.215568 CACTTTACTTTCAAACTGTGTAACGTG 59.784 37.037 0.00 0.00 42.39 4.49
3150 3700 5.940192 AACGTGATTCACATTTTCTGCTA 57.060 34.783 16.61 0.00 33.40 3.49
3168 3718 3.517100 TGCTAAGAGATCCAGCTGAGTTT 59.483 43.478 17.39 0.00 36.26 2.66
3180 3730 2.300152 AGCTGAGTTTGAGTCCGATTCA 59.700 45.455 0.00 0.00 0.00 2.57
3232 3806 2.003658 AACACAAGTTGCAGGCCGTG 62.004 55.000 1.81 0.00 36.39 4.94
3387 4053 2.125552 CGCGTGCCAGAAGGATCA 60.126 61.111 0.00 0.00 36.89 2.92
3400 4066 4.862018 CAGAAGGATCAGAACGAAGACTTC 59.138 45.833 5.03 5.03 34.47 3.01
3426 4092 6.539103 GTGTAAATCACCTCTTCCATAGAACC 59.461 42.308 0.00 0.00 40.84 3.62
3434 4100 1.600957 CTTCCATAGAACCATGCGCTG 59.399 52.381 9.73 4.25 0.00 5.18
3435 4101 0.815213 TCCATAGAACCATGCGCTGC 60.815 55.000 9.73 0.00 0.00 5.25
3440 4106 1.755179 AGAACCATGCGCTGCTATTT 58.245 45.000 9.73 0.00 0.00 1.40
3441 4107 1.672881 AGAACCATGCGCTGCTATTTC 59.327 47.619 9.73 4.01 0.00 2.17
3442 4108 1.672881 GAACCATGCGCTGCTATTTCT 59.327 47.619 9.73 0.00 0.00 2.52
3443 4109 2.620251 ACCATGCGCTGCTATTTCTA 57.380 45.000 9.73 0.00 0.00 2.10
3479 4151 9.823098 GAATATAGTAGTACTACCGTCACAATG 57.177 37.037 25.97 0.00 36.75 2.82
3508 4180 3.614092 TCATCAGCAAGAATGGGACTTC 58.386 45.455 0.00 0.00 0.00 3.01
3519 4191 4.536090 AGAATGGGACTTCATTACCTCACA 59.464 41.667 0.00 0.00 37.47 3.58
3527 4199 5.230942 ACTTCATTACCTCACAGAAACTCG 58.769 41.667 0.00 0.00 0.00 4.18
3532 4204 6.934645 TCATTACCTCACAGAAACTCGATTTT 59.065 34.615 0.00 0.00 0.00 1.82
3537 4209 6.530534 ACCTCACAGAAACTCGATTTTATACG 59.469 38.462 0.18 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.314522 TTGCCCAATGACAAGAAGGATA 57.685 40.909 0.00 0.00 0.00 2.59
78 79 0.238289 CCATAATTGCACCGCGATCC 59.762 55.000 8.23 0.00 30.45 3.36
94 95 6.831664 ACCATTGGATTCTCTAGTTACCAT 57.168 37.500 10.37 0.00 0.00 3.55
172 173 2.732412 ACAGTGTTCGATCACCTCTG 57.268 50.000 20.29 15.22 38.91 3.35
189 190 0.742990 GATTCCGGATGTGGCGAACA 60.743 55.000 4.15 0.00 44.79 3.18
269 271 0.249868 TCAAGTGTTGAGTCTGGGCG 60.250 55.000 0.00 0.00 34.08 6.13
277 292 6.825213 TCAATCAAGGGATATCAAGTGTTGAG 59.175 38.462 4.83 0.00 36.44 3.02
304 319 2.373169 AGCATGTTCTCAGTTTCAGGGA 59.627 45.455 0.00 0.00 0.00 4.20
307 322 3.672808 AGGAGCATGTTCTCAGTTTCAG 58.327 45.455 9.57 0.00 34.84 3.02
356 371 2.565210 TGAAATGGCGATGATGCAAC 57.435 45.000 0.00 0.00 36.28 4.17
419 434 4.279671 CAGACACAGAGTTCTTCTACACCT 59.720 45.833 0.00 0.00 33.83 4.00
441 456 3.057969 AGAGCAAACACGATGGATTCA 57.942 42.857 0.00 0.00 0.00 2.57
495 512 2.297701 ACAAGTGCTCGGTCAAATGTT 58.702 42.857 0.00 0.00 0.00 2.71
521 538 2.040544 CCTTCATGGCGGACACCAC 61.041 63.158 0.00 0.00 44.17 4.16
558 586 2.121963 TTCCCTGGTCTGGCCACT 60.122 61.111 0.00 0.00 43.61 4.00
609 637 2.203139 CGCCACCACTCCACACAA 60.203 61.111 0.00 0.00 0.00 3.33
691 719 0.684805 CCTGCCTTCTAGGGTCGACT 60.685 60.000 16.46 0.00 35.37 4.18
703 731 0.610232 GACATCCAAGTGCCTGCCTT 60.610 55.000 0.00 0.00 0.00 4.35
735 763 5.538849 TGTTTAACCAAAATCCCTGGAAC 57.461 39.130 0.00 0.00 37.40 3.62
798 826 8.783093 CAGAAATCCAAAACATTCACTAGTACA 58.217 33.333 0.00 0.00 0.00 2.90
799 827 8.784043 ACAGAAATCCAAAACATTCACTAGTAC 58.216 33.333 0.00 0.00 0.00 2.73
800 828 8.918202 ACAGAAATCCAAAACATTCACTAGTA 57.082 30.769 0.00 0.00 0.00 1.82
801 829 7.823745 ACAGAAATCCAAAACATTCACTAGT 57.176 32.000 0.00 0.00 0.00 2.57
1248 1657 3.866582 GGGATGAGCACGAGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
2106 2527 1.154205 GGTTCGCCAGGATCATCACG 61.154 60.000 0.00 0.00 37.19 4.35
2427 2848 1.115930 CCCACTCCCTCCCGAGTATG 61.116 65.000 0.00 0.00 41.23 2.39
2591 3012 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2592 3013 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2593 3014 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2594 3015 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2595 3016 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2596 3017 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2597 3018 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2598 3019 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2599 3020 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2600 3021 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2601 3022 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2602 3023 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2603 3024 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2604 3025 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2605 3026 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2606 3027 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2607 3028 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2608 3029 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2609 3030 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2610 3031 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2611 3032 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2612 3033 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2613 3034 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2614 3035 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2615 3036 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2616 3037 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2617 3038 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2618 3039 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2619 3040 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2620 3041 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2621 3042 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2622 3043 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2623 3044 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2624 3045 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2625 3046 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2626 3047 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2627 3048 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2628 3049 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2629 3050 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
2630 3051 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
2631 3052 5.804944 ATGAGAGAGAGAGAGAGAGAGAG 57.195 47.826 0.00 0.00 0.00 3.20
2632 3053 6.566079 AAATGAGAGAGAGAGAGAGAGAGA 57.434 41.667 0.00 0.00 0.00 3.10
2633 3054 7.636150 AAAAATGAGAGAGAGAGAGAGAGAG 57.364 40.000 0.00 0.00 0.00 3.20
2721 3145 0.824109 TTCACCGGAGCAGGTAGATG 59.176 55.000 9.46 0.00 43.89 2.90
2778 3202 3.721035 TGAGATCATCAACGCCTACATG 58.279 45.455 0.00 0.00 34.02 3.21
2911 3335 3.947910 ACCGTAAAGAACATCGGAGAA 57.052 42.857 9.37 0.00 44.86 2.87
2945 3369 5.366768 ACAGAAGCTAAGATAGGCACCAATA 59.633 40.000 0.00 0.00 0.00 1.90
2987 3523 4.813697 GCTCATGAAGAGTGAATTAGGGAC 59.186 45.833 0.00 0.00 46.47 4.46
3103 3639 9.781834 TTACACAGTTTGAAAGTAAAGTGATTG 57.218 29.630 11.69 4.77 41.36 2.67
3133 3683 7.281774 TGGATCTCTTAGCAGAAAATGTGAATC 59.718 37.037 0.00 0.00 0.00 2.52
3150 3700 3.582208 ACTCAAACTCAGCTGGATCTCTT 59.418 43.478 15.13 0.00 0.00 2.85
3168 3718 1.254026 AAGGTCGTGAATCGGACTCA 58.746 50.000 4.66 0.00 40.32 3.41
3180 3730 5.838531 TTGTTACCAATTCAAAAGGTCGT 57.161 34.783 0.00 0.00 36.87 4.34
3232 3806 3.930634 AACCAGATTTTTCTCTGCTGC 57.069 42.857 0.00 0.00 41.12 5.25
3335 3909 3.013276 TGTTCGAGCTGAGTTGTACTG 57.987 47.619 0.00 0.00 0.00 2.74
3400 4066 6.255887 GTTCTATGGAAGAGGTGATTTACACG 59.744 42.308 0.00 0.00 39.96 4.49
3426 4092 4.302455 ACTAGTAGAAATAGCAGCGCATG 58.698 43.478 11.47 6.31 0.00 4.06
3457 4123 5.591472 TGCATTGTGACGGTAGTACTACTAT 59.409 40.000 27.71 18.09 32.65 2.12
3460 4126 4.100707 TGCATTGTGACGGTAGTACTAC 57.899 45.455 22.53 22.53 35.40 2.73
3464 4130 2.093711 AGCATGCATTGTGACGGTAGTA 60.094 45.455 21.98 0.00 0.00 1.82
3465 4131 1.086696 GCATGCATTGTGACGGTAGT 58.913 50.000 14.21 0.00 0.00 2.73
3466 4132 1.372582 AGCATGCATTGTGACGGTAG 58.627 50.000 21.98 0.00 0.00 3.18
3467 4133 1.819928 AAGCATGCATTGTGACGGTA 58.180 45.000 21.98 0.00 0.00 4.02
3468 4134 0.961019 AAAGCATGCATTGTGACGGT 59.039 45.000 21.98 0.00 0.00 4.83
3469 4135 1.068402 TGAAAGCATGCATTGTGACGG 60.068 47.619 21.98 0.00 0.00 4.79
3508 4180 6.727824 AAATCGAGTTTCTGTGAGGTAATG 57.272 37.500 0.00 0.00 0.00 1.90
3519 4191 6.281405 AGATGGCGTATAAAATCGAGTTTCT 58.719 36.000 14.90 7.80 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.