Multiple sequence alignment - TraesCS7D01G196100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G196100 chr7D 100.000 4032 0 0 1 4032 152217218 152221249 0.000000e+00 7446.0
1 TraesCS7D01G196100 chr7D 84.632 911 105 18 2141 3033 141561911 141562804 0.000000e+00 874.0
2 TraesCS7D01G196100 chr7D 81.595 815 87 37 1220 1981 141561013 141561817 2.060000e-172 616.0
3 TraesCS7D01G196100 chr7D 83.025 324 35 11 3186 3489 106392128 106392451 3.970000e-70 276.0
4 TraesCS7D01G196100 chr7D 78.363 171 32 5 333 502 77494959 77494793 5.510000e-19 106.0
5 TraesCS7D01G196100 chr7B 95.023 1949 65 14 1147 3082 114393821 114395750 0.000000e+00 3033.0
6 TraesCS7D01G196100 chr7B 87.830 1060 74 31 57 1109 114392809 114393820 0.000000e+00 1192.0
7 TraesCS7D01G196100 chr7B 83.704 945 132 16 2141 3078 106859277 106858348 0.000000e+00 872.0
8 TraesCS7D01G196100 chr7B 84.513 452 46 11 1551 1981 106859814 106859366 3.720000e-115 425.0
9 TraesCS7D01G196100 chr7B 89.412 255 26 1 1220 1474 106860175 106859922 1.810000e-83 320.0
10 TraesCS7D01G196100 chr7B 79.167 168 31 4 333 499 24416650 24416486 3.290000e-21 113.0
11 TraesCS7D01G196100 chr7B 94.286 35 1 1 21 54 24417291 24417257 7.000000e-03 52.8
12 TraesCS7D01G196100 chr7A 92.227 1801 99 17 289 2073 152831642 152833417 0.000000e+00 2512.0
13 TraesCS7D01G196100 chr7A 97.431 973 17 3 2065 3037 152833469 152834433 0.000000e+00 1652.0
14 TraesCS7D01G196100 chr7A 83.929 952 123 19 2141 3078 144171109 144170174 0.000000e+00 883.0
15 TraesCS7D01G196100 chr7A 82.090 804 93 26 1220 1981 144171960 144171166 1.220000e-179 640.0
16 TraesCS7D01G196100 chr7A 89.958 239 19 5 57 293 152711327 152711562 1.820000e-78 303.0
17 TraesCS7D01G196100 chr7A 84.298 242 32 6 1221 1459 522022709 522022947 8.710000e-57 231.0
18 TraesCS7D01G196100 chr7A 85.294 238 18 6 3481 3705 152836420 152836653 3.130000e-56 230.0
19 TraesCS7D01G196100 chr7A 79.293 198 14 8 3018 3188 152836221 152836418 3.290000e-21 113.0
20 TraesCS7D01G196100 chr7A 94.444 54 2 1 3979 4031 152837923 152837976 9.290000e-12 82.4
21 TraesCS7D01G196100 chr2D 90.274 658 64 0 2376 3033 574656793 574657450 0.000000e+00 861.0
22 TraesCS7D01G196100 chr2D 83.587 658 93 4 2376 3033 575161758 575161116 1.600000e-168 603.0
23 TraesCS7D01G196100 chr2D 81.175 664 101 5 2377 3033 575168922 575168276 2.780000e-141 512.0
24 TraesCS7D01G196100 chr2D 86.174 311 29 9 3189 3486 95777821 95777512 1.400000e-84 324.0
25 TraesCS7D01G196100 chr2D 90.678 236 22 0 1229 1464 574655783 574656018 8.410000e-82 315.0
26 TraesCS7D01G196100 chr2D 89.202 213 23 0 1757 1969 575162103 575161891 2.390000e-67 267.0
27 TraesCS7D01G196100 chr2D 80.874 183 20 8 321 495 336965682 336965857 3.270000e-26 130.0
28 TraesCS7D01G196100 chr2D 87.379 103 12 1 1747 1849 574656109 574656210 2.550000e-22 117.0
29 TraesCS7D01G196100 chr2B 89.514 658 69 0 2376 3033 690931102 690931759 0.000000e+00 833.0
30 TraesCS7D01G196100 chr2B 92.373 236 18 0 1229 1464 690930421 690930656 1.800000e-88 337.0
31 TraesCS7D01G196100 chr2B 91.743 218 18 0 1751 1968 690930751 690930968 1.820000e-78 303.0
32 TraesCS7D01G196100 chr2B 88.750 80 4 4 105 181 692169306 692169229 4.290000e-15 93.5
33 TraesCS7D01G196100 chr2B 89.706 68 5 1 1015 1082 690930353 690930418 7.180000e-13 86.1
34 TraesCS7D01G196100 chr2B 83.562 73 12 0 1872 1944 498417691 498417619 7.230000e-08 69.4
35 TraesCS7D01G196100 chr2B 88.000 50 3 2 18 64 172222469 172222420 5.630000e-04 56.5
36 TraesCS7D01G196100 chr2A 89.514 658 66 1 2376 3033 713016592 713017246 0.000000e+00 830.0
37 TraesCS7D01G196100 chr2A 92.373 236 18 0 1229 1464 713015911 713016146 1.800000e-88 337.0
38 TraesCS7D01G196100 chr2A 86.319 307 28 7 3189 3481 434863481 434863787 5.030000e-84 322.0
39 TraesCS7D01G196100 chr2A 91.324 219 19 0 1750 1968 713016240 713016458 2.360000e-77 300.0
40 TraesCS7D01G196100 chr2A 83.758 314 36 8 3183 3481 587444249 587443936 2.370000e-72 283.0
41 TraesCS7D01G196100 chr2A 80.328 183 21 9 321 495 447145522 447145697 1.520000e-24 124.0
42 TraesCS7D01G196100 chr2A 89.855 69 5 1 1015 1083 713015843 713015909 2.000000e-13 87.9
43 TraesCS7D01G196100 chr6B 85.623 313 29 6 3186 3482 4815422 4815110 8.410000e-82 315.0
44 TraesCS7D01G196100 chr6B 84.740 308 33 8 3183 3476 324256591 324256284 3.050000e-76 296.0
45 TraesCS7D01G196100 chr6B 78.594 313 43 9 3183 3480 204341166 204341469 6.880000e-43 185.0
46 TraesCS7D01G196100 chr1D 85.714 308 30 5 3190 3483 52117884 52117577 3.030000e-81 313.0
47 TraesCS7D01G196100 chr6A 85.621 306 29 7 3190 3481 202900813 202900509 1.410000e-79 307.0
48 TraesCS7D01G196100 chr6A 93.333 45 3 0 57 101 595672510 595672554 2.600000e-07 67.6
49 TraesCS7D01G196100 chr3D 85.374 294 29 7 3185 3464 157793727 157794020 3.940000e-75 292.0
50 TraesCS7D01G196100 chr4D 81.111 180 17 12 328 502 10100889 10100722 1.180000e-25 128.0
51 TraesCS7D01G196100 chr4D 80.328 122 21 3 369 488 36631076 36631196 5.550000e-14 89.8
52 TraesCS7D01G196100 chr4D 80.420 143 7 10 62 184 457527700 457527559 5.550000e-14 89.8
53 TraesCS7D01G196100 chr4D 93.023 43 3 0 62 104 473830573 473830615 3.360000e-06 63.9
54 TraesCS7D01G196100 chr1A 78.736 174 22 6 330 496 575676774 575676939 7.130000e-18 102.0
55 TraesCS7D01G196100 chr4A 76.382 199 23 13 62 238 11071298 11071494 7.180000e-13 86.1
56 TraesCS7D01G196100 chr5D 92.000 50 3 1 136 184 221001865 221001914 7.230000e-08 69.4
57 TraesCS7D01G196100 chr3A 97.436 39 1 0 3956 3994 176560359 176560397 2.600000e-07 67.6
58 TraesCS7D01G196100 chr4B 88.679 53 5 1 57 109 13986339 13986288 3.360000e-06 63.9
59 TraesCS7D01G196100 chr4B 100.000 30 0 0 19 48 644867799 644867770 5.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G196100 chr7D 152217218 152221249 4031 False 7446.000 7446 100.000000 1 4032 1 chr7D.!!$F2 4031
1 TraesCS7D01G196100 chr7D 141561013 141562804 1791 False 745.000 874 83.113500 1220 3033 2 chr7D.!!$F3 1813
2 TraesCS7D01G196100 chr7B 114392809 114395750 2941 False 2112.500 3033 91.426500 57 3082 2 chr7B.!!$F1 3025
3 TraesCS7D01G196100 chr7B 106858348 106860175 1827 True 539.000 872 85.876333 1220 3078 3 chr7B.!!$R2 1858
4 TraesCS7D01G196100 chr7A 152831642 152837976 6334 False 917.880 2512 89.737800 289 4031 5 chr7A.!!$F3 3742
5 TraesCS7D01G196100 chr7A 144170174 144171960 1786 True 761.500 883 83.009500 1220 3078 2 chr7A.!!$R1 1858
6 TraesCS7D01G196100 chr2D 575168276 575168922 646 True 512.000 512 81.175000 2377 3033 1 chr2D.!!$R2 656
7 TraesCS7D01G196100 chr2D 575161116 575162103 987 True 435.000 603 86.394500 1757 3033 2 chr2D.!!$R3 1276
8 TraesCS7D01G196100 chr2D 574655783 574657450 1667 False 431.000 861 89.443667 1229 3033 3 chr2D.!!$F2 1804
9 TraesCS7D01G196100 chr2B 690930353 690931759 1406 False 389.775 833 90.834000 1015 3033 4 chr2B.!!$F1 2018
10 TraesCS7D01G196100 chr2A 713015843 713017246 1403 False 388.725 830 90.766500 1015 3033 4 chr2A.!!$F3 2018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.173029 CTAATTGCCCATGCGTTGCA 59.827 50.0 0.00 0.00 44.86 4.08 F
53 54 0.173935 CATGCGTTGCAATGGGACAT 59.826 50.0 19.93 11.77 43.62 3.06 F
1740 1830 0.322456 TTGTTCTTCTGGCGGGATGG 60.322 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1436 0.535797 GTAGTTCCTCTTCCCGGTGG 59.464 60.0 0.00 0.0 0.0 4.61 R
1914 2333 0.661552 CGATCGCGGAGTAGGAGAAA 59.338 55.0 6.13 0.0 0.0 2.52 R
3287 5753 0.179153 CGCGTGATGAGAGAGAAGCA 60.179 55.0 0.00 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.730296 CGTAAGATGGGAGATGGAATACT 57.270 43.478 0.00 0.00 43.02 2.12
23 24 6.835819 CGTAAGATGGGAGATGGAATACTA 57.164 41.667 0.00 0.00 43.02 1.82
24 25 6.857956 CGTAAGATGGGAGATGGAATACTAG 58.142 44.000 0.00 0.00 43.02 2.57
25 26 5.753721 AAGATGGGAGATGGAATACTAGC 57.246 43.478 0.00 0.00 0.00 3.42
26 27 5.022227 AGATGGGAGATGGAATACTAGCT 57.978 43.478 0.00 0.00 0.00 3.32
27 28 6.159172 AGATGGGAGATGGAATACTAGCTA 57.841 41.667 0.00 0.00 0.00 3.32
28 29 6.565974 AGATGGGAGATGGAATACTAGCTAA 58.434 40.000 0.00 0.00 0.00 3.09
29 30 7.195474 AGATGGGAGATGGAATACTAGCTAAT 58.805 38.462 0.00 0.00 0.00 1.73
30 31 7.682028 AGATGGGAGATGGAATACTAGCTAATT 59.318 37.037 0.00 0.00 0.00 1.40
31 32 7.009179 TGGGAGATGGAATACTAGCTAATTG 57.991 40.000 0.00 0.00 0.00 2.32
32 33 5.877564 GGGAGATGGAATACTAGCTAATTGC 59.122 44.000 0.00 0.00 43.29 3.56
33 34 5.877564 GGAGATGGAATACTAGCTAATTGCC 59.122 44.000 7.07 4.41 44.23 4.52
34 35 5.810095 AGATGGAATACTAGCTAATTGCCC 58.190 41.667 7.07 1.91 44.23 5.36
35 36 5.310594 AGATGGAATACTAGCTAATTGCCCA 59.689 40.000 7.07 6.72 44.23 5.36
36 37 5.582950 TGGAATACTAGCTAATTGCCCAT 57.417 39.130 7.07 0.00 44.23 4.00
37 38 5.316167 TGGAATACTAGCTAATTGCCCATG 58.684 41.667 7.07 0.00 44.23 3.66
38 39 4.156739 GGAATACTAGCTAATTGCCCATGC 59.843 45.833 0.00 0.00 44.23 4.06
39 40 1.597742 ACTAGCTAATTGCCCATGCG 58.402 50.000 0.00 0.00 44.23 4.73
40 41 1.134098 ACTAGCTAATTGCCCATGCGT 60.134 47.619 0.00 0.00 44.23 5.24
41 42 1.949525 CTAGCTAATTGCCCATGCGTT 59.050 47.619 0.00 0.00 44.23 4.84
42 43 0.457035 AGCTAATTGCCCATGCGTTG 59.543 50.000 0.00 0.00 44.23 4.10
43 44 1.147557 GCTAATTGCCCATGCGTTGC 61.148 55.000 0.00 0.00 41.78 4.17
44 45 0.173029 CTAATTGCCCATGCGTTGCA 59.827 50.000 0.00 0.00 44.86 4.08
46 47 3.058218 TTGCCCATGCGTTGCAAT 58.942 50.000 0.59 0.00 43.62 3.56
47 48 1.374378 TTGCCCATGCGTTGCAATG 60.374 52.632 14.54 14.54 43.62 2.82
48 49 2.509786 GCCCATGCGTTGCAATGG 60.510 61.111 19.93 14.54 43.62 3.16
49 50 2.184836 CCCATGCGTTGCAATGGG 59.815 61.111 19.00 19.00 44.31 4.00
50 51 3.286407 CCATGCGTTGCAATGGGA 58.714 55.556 19.93 8.83 43.62 4.37
51 52 1.153784 CCATGCGTTGCAATGGGAC 60.154 57.895 19.93 4.43 43.62 4.46
52 53 1.585517 CATGCGTTGCAATGGGACA 59.414 52.632 19.93 10.00 43.62 4.02
53 54 0.173935 CATGCGTTGCAATGGGACAT 59.826 50.000 19.93 11.77 43.62 3.06
54 55 0.173935 ATGCGTTGCAATGGGACATG 59.826 50.000 19.93 0.00 43.62 3.21
55 56 2.489539 TGCGTTGCAATGGGACATGC 62.490 55.000 19.93 5.20 41.06 4.06
73 74 4.633126 ACATGCACACTAATCATGTCTGAC 59.367 41.667 0.00 0.00 45.20 3.51
127 129 2.840511 TGAGTATGGGTAGGGAAAGCA 58.159 47.619 0.00 0.00 0.00 3.91
185 187 9.804977 AAATTTGATTTGATTTGGGTATGGAAA 57.195 25.926 0.00 0.00 0.00 3.13
189 191 5.637006 TTTGATTTGGGTATGGAAAGACG 57.363 39.130 0.00 0.00 0.00 4.18
212 215 9.556030 GACGAGGAAAATTTAATTTAGTTGAGG 57.444 33.333 3.17 0.00 0.00 3.86
261 265 9.880157 TTTAGTTAATGTAGACATGGTTAGGAC 57.120 33.333 0.00 0.00 36.56 3.85
297 301 0.528470 GGACTGAGTCCCAAGAGACG 59.472 60.000 20.95 0.00 46.19 4.18
314 318 5.152097 AGAGACGTACACACTCGTTTAATG 58.848 41.667 0.00 0.00 40.39 1.90
413 417 8.195165 TGGTAATGTTTGATTTGATTTGGGTA 57.805 30.769 0.00 0.00 0.00 3.69
416 420 9.097257 GTAATGTTTGATTTGATTTGGGTATGG 57.903 33.333 0.00 0.00 0.00 2.74
430 434 6.652205 TTGGGTATGGGTAAGAGAAGAAAT 57.348 37.500 0.00 0.00 0.00 2.17
492 496 8.334263 TGATTTGATTGAGTTAATGCAGTACA 57.666 30.769 0.00 0.00 0.00 2.90
499 503 9.443283 GATTGAGTTAATGCAGTACATGATTTC 57.557 33.333 0.00 0.00 39.60 2.17
501 505 6.816140 TGAGTTAATGCAGTACATGATTTCGA 59.184 34.615 0.00 0.00 39.60 3.71
522 527 0.539051 CGAGGGCTGAATCCTGAGTT 59.461 55.000 0.00 0.00 34.21 3.01
629 644 9.992910 AAAAAGTTTTGACTTAGTTAAGGTACG 57.007 29.630 0.61 0.00 37.62 3.67
630 645 8.722480 AAAGTTTTGACTTAGTTAAGGTACGT 57.278 30.769 0.00 0.00 37.62 3.57
631 646 9.816354 AAAGTTTTGACTTAGTTAAGGTACGTA 57.184 29.630 0.00 0.00 37.62 3.57
649 664 8.761689 AGGTACGTAGGTAAGATTTAATTTGGA 58.238 33.333 0.00 0.00 0.00 3.53
665 680 0.846015 TGGATATGGACAGGGCAAGG 59.154 55.000 0.00 0.00 0.00 3.61
671 686 1.668826 TGGACAGGGCAAGGTAAGAT 58.331 50.000 0.00 0.00 0.00 2.40
672 687 1.992557 TGGACAGGGCAAGGTAAGATT 59.007 47.619 0.00 0.00 0.00 2.40
673 688 2.378547 TGGACAGGGCAAGGTAAGATTT 59.621 45.455 0.00 0.00 0.00 2.17
674 689 3.181423 TGGACAGGGCAAGGTAAGATTTT 60.181 43.478 0.00 0.00 0.00 1.82
939 957 3.423154 CTCCCGAAACGTGGCTGC 61.423 66.667 0.00 0.00 0.00 5.25
978 996 2.437895 GGGGCCAAACGCTCTACC 60.438 66.667 4.39 0.00 38.42 3.18
1010 1028 2.602746 CTTAGCGAAATGGCCCGGGA 62.603 60.000 29.31 3.75 0.00 5.14
1113 1131 7.038659 AGAAAAACAGATCCGACTCTCTATTG 58.961 38.462 0.00 0.00 0.00 1.90
1116 1134 3.067461 ACAGATCCGACTCTCTATTGCAC 59.933 47.826 0.00 0.00 0.00 4.57
1118 1136 4.517075 CAGATCCGACTCTCTATTGCACTA 59.483 45.833 0.00 0.00 0.00 2.74
1120 1138 5.414454 AGATCCGACTCTCTATTGCACTATC 59.586 44.000 0.00 0.00 0.00 2.08
1130 1148 1.227102 TGCACTATCCCCATGCACC 59.773 57.895 0.00 0.00 44.17 5.01
1132 1150 1.922057 CACTATCCCCATGCACCCA 59.078 57.895 0.00 0.00 0.00 4.51
1144 1162 0.896923 TGCACCCATTCATTCTTGGC 59.103 50.000 0.00 0.00 0.00 4.52
1172 1190 7.402054 AGATCAATCTGGTATCTCTACTCGAT 58.598 38.462 0.00 0.00 35.42 3.59
1210 1228 2.053984 CGATCAAATCGCGCGGTG 60.054 61.111 31.69 24.08 46.55 4.94
1216 1234 2.677003 AAATCGCGCGGTGGACTTG 61.677 57.895 31.69 0.00 0.00 3.16
1528 1574 4.341806 TCTGTGAATTCAGGCAATGTTTGT 59.658 37.500 8.80 0.00 36.25 2.83
1529 1575 5.021033 TGTGAATTCAGGCAATGTTTGTT 57.979 34.783 8.80 0.00 0.00 2.83
1530 1576 6.040278 TCTGTGAATTCAGGCAATGTTTGTTA 59.960 34.615 8.80 0.00 36.25 2.41
1673 1733 1.699730 TCGAAGACTCAACTCACCCA 58.300 50.000 0.00 0.00 0.00 4.51
1676 1736 2.079925 GAAGACTCAACTCACCCATGC 58.920 52.381 0.00 0.00 0.00 4.06
1677 1737 1.059098 AGACTCAACTCACCCATGCA 58.941 50.000 0.00 0.00 0.00 3.96
1694 1762 5.407387 CCCATGCATTTCAGCTAATTTATGC 59.593 40.000 0.00 9.98 38.97 3.14
1700 1768 8.202811 TGCATTTCAGCTAATTTATGCCATTTA 58.797 29.630 12.81 0.00 38.02 1.40
1733 1819 2.945668 ACTCACTGTTTGTTCTTCTGGC 59.054 45.455 0.00 0.00 0.00 4.85
1740 1830 0.322456 TTGTTCTTCTGGCGGGATGG 60.322 55.000 0.00 0.00 0.00 3.51
1914 2333 4.498520 CTCGCCGCGGTCATGTCT 62.499 66.667 28.70 0.00 0.00 3.41
2050 2471 5.882000 AGCAATTAAATTGATGAAAAGGGGC 59.118 36.000 0.00 0.00 42.83 5.80
2292 2812 4.018506 TGGTTCTCATAGAAATCCAGGCAA 60.019 41.667 0.00 0.00 35.75 4.52
3089 5541 5.739237 ACTTATGTTTGCGCATAAAAACG 57.261 34.783 12.75 2.37 39.80 3.60
3119 5571 7.408290 GCATTTTGTCGATAAAGAAGTGTTTCG 60.408 37.037 7.42 0.00 38.38 3.46
3124 5576 4.151689 TCGATAAAGAAGTGTTTCGGCTTG 59.848 41.667 0.00 0.00 38.38 4.01
3128 5580 2.484889 AGAAGTGTTTCGGCTTGTCTC 58.515 47.619 0.00 0.00 38.38 3.36
3129 5581 1.192534 GAAGTGTTTCGGCTTGTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
3130 5582 0.600255 AGTGTTTCGGCTTGTCTCGG 60.600 55.000 0.00 0.00 0.00 4.63
3131 5583 1.301401 TGTTTCGGCTTGTCTCGGG 60.301 57.895 0.00 0.00 0.00 5.14
3132 5584 2.033194 GTTTCGGCTTGTCTCGGGG 61.033 63.158 0.00 0.00 0.00 5.73
3133 5585 3.248446 TTTCGGCTTGTCTCGGGGG 62.248 63.158 0.00 0.00 0.00 5.40
3166 5632 2.456577 GCTTTGCCCAATTCCTCCTTA 58.543 47.619 0.00 0.00 0.00 2.69
3171 5637 2.584965 TGCCCAATTCCTCCTTATCCAA 59.415 45.455 0.00 0.00 0.00 3.53
3199 5665 8.539770 TCGTTTACTACTATATACTCCCTTCG 57.460 38.462 0.00 0.00 0.00 3.79
3200 5666 8.150945 TCGTTTACTACTATATACTCCCTTCGT 58.849 37.037 0.00 0.00 0.00 3.85
3201 5667 8.439286 CGTTTACTACTATATACTCCCTTCGTC 58.561 40.741 0.00 0.00 0.00 4.20
3202 5668 8.726068 GTTTACTACTATATACTCCCTTCGTCC 58.274 40.741 0.00 0.00 0.00 4.79
3203 5669 5.486526 ACTACTATATACTCCCTTCGTCCG 58.513 45.833 0.00 0.00 0.00 4.79
3204 5670 4.630644 ACTATATACTCCCTTCGTCCGA 57.369 45.455 0.00 0.00 0.00 4.55
3205 5671 5.176741 ACTATATACTCCCTTCGTCCGAT 57.823 43.478 0.00 0.00 0.00 4.18
3206 5672 4.942483 ACTATATACTCCCTTCGTCCGATG 59.058 45.833 0.00 0.00 0.00 3.84
3207 5673 2.359981 ATACTCCCTTCGTCCGATGA 57.640 50.000 4.37 0.00 0.00 2.92
3208 5674 2.133281 TACTCCCTTCGTCCGATGAA 57.867 50.000 3.04 3.04 0.00 2.57
3209 5675 0.818296 ACTCCCTTCGTCCGATGAAG 59.182 55.000 19.63 19.63 40.14 3.02
3210 5676 1.103803 CTCCCTTCGTCCGATGAAGA 58.896 55.000 25.77 10.79 42.39 2.87
3211 5677 1.066303 CTCCCTTCGTCCGATGAAGAG 59.934 57.143 25.77 16.36 42.39 2.85
3212 5678 0.818296 CCCTTCGTCCGATGAAGAGT 59.182 55.000 25.77 0.00 42.39 3.24
3213 5679 1.469940 CCCTTCGTCCGATGAAGAGTG 60.470 57.143 25.77 12.84 42.39 3.51
3214 5680 1.202582 CCTTCGTCCGATGAAGAGTGT 59.797 52.381 25.77 0.00 42.39 3.55
3215 5681 2.422479 CCTTCGTCCGATGAAGAGTGTA 59.578 50.000 25.77 0.00 42.39 2.90
3216 5682 3.427243 CTTCGTCCGATGAAGAGTGTAC 58.573 50.000 21.35 0.00 42.39 2.90
3217 5683 1.395954 TCGTCCGATGAAGAGTGTACG 59.604 52.381 0.00 0.00 0.00 3.67
3218 5684 1.129998 CGTCCGATGAAGAGTGTACGT 59.870 52.381 0.00 0.00 0.00 3.57
3219 5685 2.413765 CGTCCGATGAAGAGTGTACGTT 60.414 50.000 0.00 0.00 0.00 3.99
3220 5686 3.572584 GTCCGATGAAGAGTGTACGTTT 58.427 45.455 0.00 0.00 0.00 3.60
3221 5687 3.364023 GTCCGATGAAGAGTGTACGTTTG 59.636 47.826 0.00 0.00 0.00 2.93
3222 5688 2.666508 CCGATGAAGAGTGTACGTTTGG 59.333 50.000 0.00 0.00 0.00 3.28
3223 5689 2.092211 CGATGAAGAGTGTACGTTTGGC 59.908 50.000 0.00 0.00 0.00 4.52
3224 5690 2.902705 TGAAGAGTGTACGTTTGGCT 57.097 45.000 0.00 0.00 0.00 4.75
3225 5691 3.188159 TGAAGAGTGTACGTTTGGCTT 57.812 42.857 0.00 0.00 0.00 4.35
3226 5692 3.128349 TGAAGAGTGTACGTTTGGCTTC 58.872 45.455 0.00 2.17 0.00 3.86
3227 5693 2.902705 AGAGTGTACGTTTGGCTTCA 57.097 45.000 0.00 0.00 0.00 3.02
3228 5694 3.188159 AGAGTGTACGTTTGGCTTCAA 57.812 42.857 0.00 0.00 0.00 2.69
3229 5695 3.537580 AGAGTGTACGTTTGGCTTCAAA 58.462 40.909 0.00 0.00 37.97 2.69
3230 5696 4.134563 AGAGTGTACGTTTGGCTTCAAAT 58.865 39.130 0.00 0.00 41.70 2.32
3231 5697 4.578928 AGAGTGTACGTTTGGCTTCAAATT 59.421 37.500 0.00 0.00 41.70 1.82
3232 5698 5.067283 AGAGTGTACGTTTGGCTTCAAATTT 59.933 36.000 0.00 0.00 41.70 1.82
3233 5699 5.040635 AGTGTACGTTTGGCTTCAAATTTG 58.959 37.500 12.15 12.15 41.70 2.32
3234 5700 4.801516 GTGTACGTTTGGCTTCAAATTTGT 59.198 37.500 17.47 0.00 41.70 2.83
3235 5701 5.038033 TGTACGTTTGGCTTCAAATTTGTC 58.962 37.500 17.47 8.33 41.70 3.18
3236 5702 3.453424 ACGTTTGGCTTCAAATTTGTCC 58.547 40.909 17.47 16.10 41.70 4.02
3237 5703 3.118956 ACGTTTGGCTTCAAATTTGTCCA 60.119 39.130 17.47 18.12 41.70 4.02
3238 5704 4.057432 CGTTTGGCTTCAAATTTGTCCAT 58.943 39.130 17.47 0.00 41.70 3.41
3239 5705 5.221342 ACGTTTGGCTTCAAATTTGTCCATA 60.221 36.000 17.47 14.18 41.70 2.74
3240 5706 5.694006 CGTTTGGCTTCAAATTTGTCCATAA 59.306 36.000 17.47 14.67 41.70 1.90
3241 5707 6.201806 CGTTTGGCTTCAAATTTGTCCATAAA 59.798 34.615 17.47 11.89 41.70 1.40
3242 5708 7.254590 CGTTTGGCTTCAAATTTGTCCATAAAA 60.255 33.333 17.47 11.33 41.70 1.52
3243 5709 7.727331 TTGGCTTCAAATTTGTCCATAAAAG 57.273 32.000 17.47 12.33 0.00 2.27
3244 5710 7.060383 TGGCTTCAAATTTGTCCATAAAAGA 57.940 32.000 17.47 0.00 0.00 2.52
3245 5711 7.153985 TGGCTTCAAATTTGTCCATAAAAGAG 58.846 34.615 17.47 3.77 0.00 2.85
3246 5712 7.154656 GGCTTCAAATTTGTCCATAAAAGAGT 58.845 34.615 17.47 0.00 0.00 3.24
3247 5713 7.116805 GGCTTCAAATTTGTCCATAAAAGAGTG 59.883 37.037 17.47 0.00 0.00 3.51
3248 5714 7.653311 GCTTCAAATTTGTCCATAAAAGAGTGT 59.347 33.333 17.47 0.00 0.00 3.55
3250 5716 9.959749 TTCAAATTTGTCCATAAAAGAGTGTAC 57.040 29.630 17.47 0.00 0.00 2.90
3251 5717 9.126151 TCAAATTTGTCCATAAAAGAGTGTACA 57.874 29.630 17.47 0.00 0.00 2.90
3252 5718 9.912634 CAAATTTGTCCATAAAAGAGTGTACAT 57.087 29.630 10.15 0.00 0.00 2.29
3254 5720 9.520515 AATTTGTCCATAAAAGAGTGTACATCT 57.479 29.630 0.00 0.27 0.00 2.90
3257 5723 9.817809 TTGTCCATAAAAGAGTGTACATCTATC 57.182 33.333 0.00 0.00 0.00 2.08
3258 5724 9.201989 TGTCCATAAAAGAGTGTACATCTATCT 57.798 33.333 0.00 0.00 0.00 1.98
3261 5727 9.482627 CCATAAAAGAGTGTACATCTATCTTCC 57.517 37.037 0.00 0.00 30.16 3.46
3262 5728 9.482627 CATAAAAGAGTGTACATCTATCTTCCC 57.517 37.037 0.00 0.00 30.16 3.97
3263 5729 7.496346 AAAAGAGTGTACATCTATCTTCCCA 57.504 36.000 0.00 0.00 30.16 4.37
3264 5730 7.496346 AAAGAGTGTACATCTATCTTCCCAA 57.504 36.000 0.00 0.00 30.16 4.12
3265 5731 7.682787 AAGAGTGTACATCTATCTTCCCAAT 57.317 36.000 0.00 0.00 0.00 3.16
3266 5732 7.060383 AGAGTGTACATCTATCTTCCCAATG 57.940 40.000 0.00 0.00 0.00 2.82
3267 5733 5.615289 AGTGTACATCTATCTTCCCAATGC 58.385 41.667 0.00 0.00 0.00 3.56
3268 5734 5.130975 AGTGTACATCTATCTTCCCAATGCA 59.869 40.000 0.00 0.00 0.00 3.96
3269 5735 5.237344 GTGTACATCTATCTTCCCAATGCAC 59.763 44.000 0.00 0.00 0.00 4.57
3270 5736 4.785346 ACATCTATCTTCCCAATGCACT 57.215 40.909 0.00 0.00 0.00 4.40
3271 5737 5.121380 ACATCTATCTTCCCAATGCACTT 57.879 39.130 0.00 0.00 0.00 3.16
3272 5738 5.513233 ACATCTATCTTCCCAATGCACTTT 58.487 37.500 0.00 0.00 0.00 2.66
3273 5739 5.359009 ACATCTATCTTCCCAATGCACTTTG 59.641 40.000 0.00 0.00 0.00 2.77
3274 5740 5.178096 TCTATCTTCCCAATGCACTTTGA 57.822 39.130 1.52 0.00 0.00 2.69
3275 5741 5.569355 TCTATCTTCCCAATGCACTTTGAA 58.431 37.500 1.52 0.00 0.00 2.69
3276 5742 4.796038 ATCTTCCCAATGCACTTTGAAG 57.204 40.909 1.52 6.58 0.00 3.02
3277 5743 3.565307 TCTTCCCAATGCACTTTGAAGT 58.435 40.909 14.09 0.00 40.60 3.01
3278 5744 4.724399 TCTTCCCAATGCACTTTGAAGTA 58.276 39.130 14.09 3.46 37.08 2.24
3279 5745 4.761739 TCTTCCCAATGCACTTTGAAGTAG 59.238 41.667 14.09 4.89 37.08 2.57
3280 5746 4.365514 TCCCAATGCACTTTGAAGTAGA 57.634 40.909 1.52 0.00 37.08 2.59
3281 5747 4.724399 TCCCAATGCACTTTGAAGTAGAA 58.276 39.130 1.52 0.00 37.08 2.10
3282 5748 5.136828 TCCCAATGCACTTTGAAGTAGAAA 58.863 37.500 1.52 0.00 37.08 2.52
3283 5749 5.596361 TCCCAATGCACTTTGAAGTAGAAAA 59.404 36.000 1.52 0.00 37.08 2.29
3284 5750 6.097554 TCCCAATGCACTTTGAAGTAGAAAAA 59.902 34.615 1.52 0.00 37.08 1.94
3304 5770 5.542616 AAAAATGCTTCTCTCTCATCACG 57.457 39.130 0.00 0.00 0.00 4.35
3305 5771 2.222007 ATGCTTCTCTCTCATCACGC 57.778 50.000 0.00 0.00 0.00 5.34
3306 5772 0.179153 TGCTTCTCTCTCATCACGCG 60.179 55.000 3.53 3.53 0.00 6.01
3307 5773 0.869454 GCTTCTCTCTCATCACGCGG 60.869 60.000 12.47 0.00 0.00 6.46
3308 5774 0.453793 CTTCTCTCTCATCACGCGGT 59.546 55.000 12.47 0.00 0.00 5.68
3309 5775 1.671328 CTTCTCTCTCATCACGCGGTA 59.329 52.381 12.47 0.00 0.00 4.02
3310 5776 1.746470 TCTCTCTCATCACGCGGTAA 58.254 50.000 12.47 0.00 0.00 2.85
3311 5777 2.298610 TCTCTCTCATCACGCGGTAAT 58.701 47.619 12.47 0.00 0.00 1.89
3312 5778 2.290916 TCTCTCTCATCACGCGGTAATC 59.709 50.000 12.47 0.00 0.00 1.75
3313 5779 2.021457 TCTCTCATCACGCGGTAATCA 58.979 47.619 12.47 0.00 0.00 2.57
3314 5780 2.425668 TCTCTCATCACGCGGTAATCAA 59.574 45.455 12.47 0.00 0.00 2.57
3315 5781 2.791560 CTCTCATCACGCGGTAATCAAG 59.208 50.000 12.47 0.00 0.00 3.02
3316 5782 2.425668 TCTCATCACGCGGTAATCAAGA 59.574 45.455 12.47 1.20 0.00 3.02
3317 5783 2.535984 CTCATCACGCGGTAATCAAGAC 59.464 50.000 12.47 0.00 0.00 3.01
3318 5784 1.593006 CATCACGCGGTAATCAAGACC 59.407 52.381 12.47 0.00 0.00 3.85
3319 5785 0.604073 TCACGCGGTAATCAAGACCA 59.396 50.000 12.47 0.00 36.72 4.02
3320 5786 1.001068 TCACGCGGTAATCAAGACCAA 59.999 47.619 12.47 0.00 36.72 3.67
3321 5787 2.006888 CACGCGGTAATCAAGACCAAT 58.993 47.619 12.47 0.00 36.72 3.16
3322 5788 3.119065 TCACGCGGTAATCAAGACCAATA 60.119 43.478 12.47 0.00 36.72 1.90
3323 5789 3.619483 CACGCGGTAATCAAGACCAATAA 59.381 43.478 12.47 0.00 36.72 1.40
3324 5790 3.619929 ACGCGGTAATCAAGACCAATAAC 59.380 43.478 12.47 0.00 36.72 1.89
3325 5791 3.619483 CGCGGTAATCAAGACCAATAACA 59.381 43.478 0.00 0.00 36.72 2.41
3326 5792 4.272504 CGCGGTAATCAAGACCAATAACAT 59.727 41.667 0.00 0.00 36.72 2.71
3327 5793 5.220777 CGCGGTAATCAAGACCAATAACATT 60.221 40.000 0.00 0.00 36.72 2.71
3328 5794 6.560711 GCGGTAATCAAGACCAATAACATTT 58.439 36.000 0.00 0.00 36.72 2.32
3329 5795 7.033185 GCGGTAATCAAGACCAATAACATTTT 58.967 34.615 0.00 0.00 36.72 1.82
3330 5796 8.185505 GCGGTAATCAAGACCAATAACATTTTA 58.814 33.333 0.00 0.00 36.72 1.52
3331 5797 9.498307 CGGTAATCAAGACCAATAACATTTTAC 57.502 33.333 0.00 0.00 36.72 2.01
3340 5806 8.836413 AGACCAATAACATTTTACATATGGTCG 58.164 33.333 7.80 0.00 43.80 4.79
3341 5807 7.422399 ACCAATAACATTTTACATATGGTCGC 58.578 34.615 7.80 0.00 0.00 5.19
3342 5808 7.284489 ACCAATAACATTTTACATATGGTCGCT 59.716 33.333 7.80 0.00 0.00 4.93
3343 5809 8.134895 CCAATAACATTTTACATATGGTCGCTT 58.865 33.333 7.80 0.00 0.00 4.68
3344 5810 9.515020 CAATAACATTTTACATATGGTCGCTTT 57.485 29.630 7.80 0.00 0.00 3.51
3357 5823 9.708222 CATATGGTCGCTTTAATTTCTATATGC 57.292 33.333 0.00 0.00 0.00 3.14
3358 5824 7.744087 ATGGTCGCTTTAATTTCTATATGCA 57.256 32.000 0.00 0.00 0.00 3.96
3359 5825 6.954944 TGGTCGCTTTAATTTCTATATGCAC 58.045 36.000 0.00 0.00 0.00 4.57
3360 5826 6.765989 TGGTCGCTTTAATTTCTATATGCACT 59.234 34.615 0.00 0.00 0.00 4.40
3361 5827 7.282224 TGGTCGCTTTAATTTCTATATGCACTT 59.718 33.333 0.00 0.00 0.00 3.16
3362 5828 8.770828 GGTCGCTTTAATTTCTATATGCACTTA 58.229 33.333 0.00 0.00 0.00 2.24
3363 5829 9.798885 GTCGCTTTAATTTCTATATGCACTTAG 57.201 33.333 0.00 0.00 0.00 2.18
3364 5830 9.542462 TCGCTTTAATTTCTATATGCACTTAGT 57.458 29.630 0.00 0.00 0.00 2.24
3372 5838 8.450578 TTTCTATATGCACTTAGTTCATTGGG 57.549 34.615 2.51 0.00 0.00 4.12
3373 5839 6.533730 TCTATATGCACTTAGTTCATTGGGG 58.466 40.000 2.51 0.00 0.00 4.96
3374 5840 2.214376 TGCACTTAGTTCATTGGGGG 57.786 50.000 0.00 0.00 0.00 5.40
3375 5841 1.427368 TGCACTTAGTTCATTGGGGGT 59.573 47.619 0.00 0.00 0.00 4.95
3376 5842 2.158385 TGCACTTAGTTCATTGGGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
3377 5843 2.231235 GCACTTAGTTCATTGGGGGTTG 59.769 50.000 0.00 0.00 0.00 3.77
3378 5844 2.825532 CACTTAGTTCATTGGGGGTTGG 59.174 50.000 0.00 0.00 0.00 3.77
3379 5845 2.225267 ACTTAGTTCATTGGGGGTTGGG 60.225 50.000 0.00 0.00 0.00 4.12
3380 5846 1.462426 TAGTTCATTGGGGGTTGGGT 58.538 50.000 0.00 0.00 0.00 4.51
3381 5847 1.462426 AGTTCATTGGGGGTTGGGTA 58.538 50.000 0.00 0.00 0.00 3.69
3382 5848 1.790157 AGTTCATTGGGGGTTGGGTAA 59.210 47.619 0.00 0.00 0.00 2.85
3383 5849 2.385417 AGTTCATTGGGGGTTGGGTAAT 59.615 45.455 0.00 0.00 0.00 1.89
3384 5850 3.178046 GTTCATTGGGGGTTGGGTAATT 58.822 45.455 0.00 0.00 0.00 1.40
3385 5851 4.046103 AGTTCATTGGGGGTTGGGTAATTA 59.954 41.667 0.00 0.00 0.00 1.40
3386 5852 4.694280 TCATTGGGGGTTGGGTAATTAA 57.306 40.909 0.00 0.00 0.00 1.40
3387 5853 5.024803 TCATTGGGGGTTGGGTAATTAAA 57.975 39.130 0.00 0.00 0.00 1.52
3388 5854 5.412384 TCATTGGGGGTTGGGTAATTAAAA 58.588 37.500 0.00 0.00 0.00 1.52
3389 5855 5.850028 TCATTGGGGGTTGGGTAATTAAAAA 59.150 36.000 0.00 0.00 0.00 1.94
3390 5856 5.827326 TTGGGGGTTGGGTAATTAAAAAG 57.173 39.130 0.00 0.00 0.00 2.27
3391 5857 4.168883 TGGGGGTTGGGTAATTAAAAAGG 58.831 43.478 0.00 0.00 0.00 3.11
3392 5858 4.140519 TGGGGGTTGGGTAATTAAAAAGGA 60.141 41.667 0.00 0.00 0.00 3.36
3393 5859 4.468510 GGGGGTTGGGTAATTAAAAAGGAG 59.531 45.833 0.00 0.00 0.00 3.69
3394 5860 5.335261 GGGGTTGGGTAATTAAAAAGGAGA 58.665 41.667 0.00 0.00 0.00 3.71
3395 5861 5.421056 GGGGTTGGGTAATTAAAAAGGAGAG 59.579 44.000 0.00 0.00 0.00 3.20
3396 5862 6.250711 GGGTTGGGTAATTAAAAAGGAGAGA 58.749 40.000 0.00 0.00 0.00 3.10
3397 5863 6.152323 GGGTTGGGTAATTAAAAAGGAGAGAC 59.848 42.308 0.00 0.00 0.00 3.36
3398 5864 6.717997 GGTTGGGTAATTAAAAAGGAGAGACA 59.282 38.462 0.00 0.00 0.00 3.41
3399 5865 7.396339 GGTTGGGTAATTAAAAAGGAGAGACAT 59.604 37.037 0.00 0.00 0.00 3.06
3400 5866 8.459635 GTTGGGTAATTAAAAAGGAGAGACATC 58.540 37.037 0.00 0.00 0.00 3.06
3401 5867 7.928873 TGGGTAATTAAAAAGGAGAGACATCT 58.071 34.615 0.00 0.00 38.98 2.90
3402 5868 8.390921 TGGGTAATTAAAAAGGAGAGACATCTT 58.609 33.333 0.00 0.00 35.30 2.40
3403 5869 9.244292 GGGTAATTAAAAAGGAGAGACATCTTT 57.756 33.333 0.00 0.00 35.30 2.52
3410 5876 5.893897 AAGGAGAGACATCTTTTCAATGC 57.106 39.130 0.00 0.00 35.30 3.56
3411 5877 4.914983 AGGAGAGACATCTTTTCAATGCA 58.085 39.130 0.00 0.00 35.30 3.96
3412 5878 5.507637 AGGAGAGACATCTTTTCAATGCAT 58.492 37.500 0.00 0.00 35.30 3.96
3413 5879 5.950549 AGGAGAGACATCTTTTCAATGCATT 59.049 36.000 5.99 5.99 35.30 3.56
3414 5880 6.436532 AGGAGAGACATCTTTTCAATGCATTT 59.563 34.615 9.83 0.00 35.30 2.32
3415 5881 7.039223 AGGAGAGACATCTTTTCAATGCATTTT 60.039 33.333 9.83 0.00 35.30 1.82
3416 5882 7.601508 GGAGAGACATCTTTTCAATGCATTTTT 59.398 33.333 9.83 0.00 35.30 1.94
3438 5904 8.893563 TTTTTATCCACTCCATATTTTGTCCT 57.106 30.769 0.00 0.00 0.00 3.85
3439 5905 9.983024 TTTTTATCCACTCCATATTTTGTCCTA 57.017 29.630 0.00 0.00 0.00 2.94
3440 5906 9.983024 TTTTATCCACTCCATATTTTGTCCTAA 57.017 29.630 0.00 0.00 0.00 2.69
3441 5907 9.983024 TTTATCCACTCCATATTTTGTCCTAAA 57.017 29.630 0.00 0.00 0.00 1.85
3442 5908 9.983024 TTATCCACTCCATATTTTGTCCTAAAA 57.017 29.630 0.00 0.00 0.00 1.52
3444 5910 8.893563 TCCACTCCATATTTTGTCCTAAAATT 57.106 30.769 3.32 0.00 32.64 1.82
3445 5911 9.320295 TCCACTCCATATTTTGTCCTAAAATTT 57.680 29.630 3.32 0.00 32.64 1.82
3446 5912 9.586435 CCACTCCATATTTTGTCCTAAAATTTC 57.414 33.333 3.32 0.00 32.64 2.17
3469 5935 8.942338 TTCTATATGTACACATTTCACCAGAC 57.058 34.615 0.00 0.00 37.76 3.51
3470 5936 7.200455 TCTATATGTACACATTTCACCAGACG 58.800 38.462 0.00 0.00 37.76 4.18
3471 5937 2.761559 TGTACACATTTCACCAGACGG 58.238 47.619 0.00 0.00 38.77 4.79
3472 5938 3.244422 ATGTACACATTTCACCAGACGGT 60.244 43.478 0.00 0.00 38.87 4.83
3482 5948 2.591915 CCAGACGGTGGGAGTATGT 58.408 57.895 0.00 0.00 43.63 2.29
3483 5949 0.460311 CCAGACGGTGGGAGTATGTC 59.540 60.000 0.00 0.00 43.63 3.06
3484 5950 1.475403 CAGACGGTGGGAGTATGTCT 58.525 55.000 0.00 0.00 40.35 3.41
3485 5951 2.651455 CAGACGGTGGGAGTATGTCTA 58.349 52.381 0.00 0.00 37.79 2.59
3486 5952 3.223435 CAGACGGTGGGAGTATGTCTAT 58.777 50.000 0.00 0.00 37.79 1.98
3487 5953 3.004839 CAGACGGTGGGAGTATGTCTATG 59.995 52.174 0.00 0.00 37.79 2.23
3491 5957 3.243771 CGGTGGGAGTATGTCTATGGTTC 60.244 52.174 0.00 0.00 0.00 3.62
3529 5995 8.635765 ACTTTTATTGAGAGGCTTGATAAACA 57.364 30.769 0.00 0.00 0.00 2.83
3535 6001 6.544928 TGAGAGGCTTGATAAACATAGACA 57.455 37.500 0.00 0.00 0.00 3.41
3537 6003 7.212976 TGAGAGGCTTGATAAACATAGACATC 58.787 38.462 0.00 0.00 0.00 3.06
3538 6004 7.129457 AGAGGCTTGATAAACATAGACATCA 57.871 36.000 0.00 0.00 0.00 3.07
3540 6006 8.216423 AGAGGCTTGATAAACATAGACATCATT 58.784 33.333 0.00 0.00 0.00 2.57
3543 6009 9.807649 GGCTTGATAAACATAGACATCATTTTT 57.192 29.630 0.00 0.00 0.00 1.94
3564 6030 1.434513 TTCTGGCAATGGGGGAGTGT 61.435 55.000 0.00 0.00 0.00 3.55
3565 6031 0.548926 TCTGGCAATGGGGGAGTGTA 60.549 55.000 0.00 0.00 0.00 2.90
3566 6032 0.331278 CTGGCAATGGGGGAGTGTAA 59.669 55.000 0.00 0.00 0.00 2.41
3595 6061 4.289672 AGATACCACCTTGTGAAATGGTCT 59.710 41.667 0.00 0.00 44.40 3.85
3597 6063 1.806542 CCACCTTGTGAAATGGTCTCG 59.193 52.381 0.00 0.00 34.10 4.04
3674 6142 7.885399 AGCAATATTAGCCTCCTAGTTAAATGG 59.115 37.037 6.34 0.00 0.00 3.16
3705 6184 2.511218 AGATGGGCTTTGGCAAGATAGA 59.489 45.455 0.00 0.00 40.87 1.98
3706 6185 2.425143 TGGGCTTTGGCAAGATAGAG 57.575 50.000 0.00 0.00 40.87 2.43
3707 6186 1.635487 TGGGCTTTGGCAAGATAGAGT 59.365 47.619 0.00 0.00 40.87 3.24
3708 6187 2.293170 GGGCTTTGGCAAGATAGAGTC 58.707 52.381 0.00 0.00 40.87 3.36
3709 6188 2.293170 GGCTTTGGCAAGATAGAGTCC 58.707 52.381 0.00 0.00 40.87 3.85
3710 6189 2.092699 GGCTTTGGCAAGATAGAGTCCT 60.093 50.000 0.00 0.00 40.87 3.85
3711 6190 3.134804 GGCTTTGGCAAGATAGAGTCCTA 59.865 47.826 0.00 0.00 40.87 2.94
3712 6191 4.123506 GCTTTGGCAAGATAGAGTCCTAC 58.876 47.826 0.00 0.00 38.54 3.18
3713 6192 4.141824 GCTTTGGCAAGATAGAGTCCTACT 60.142 45.833 0.00 0.00 38.54 2.57
3714 6193 5.627968 GCTTTGGCAAGATAGAGTCCTACTT 60.628 44.000 0.00 0.00 38.54 2.24
3715 6194 5.599999 TTGGCAAGATAGAGTCCTACTTC 57.400 43.478 0.00 0.00 0.00 3.01
3717 6196 4.646945 TGGCAAGATAGAGTCCTACTTCAG 59.353 45.833 0.00 0.00 0.00 3.02
3720 6199 6.238814 GGCAAGATAGAGTCCTACTTCAGTAC 60.239 46.154 0.00 0.00 0.00 2.73
3722 6201 7.148052 GCAAGATAGAGTCCTACTTCAGTACAA 60.148 40.741 0.00 0.00 0.00 2.41
3723 6202 7.868906 AGATAGAGTCCTACTTCAGTACAAC 57.131 40.000 0.00 0.00 0.00 3.32
3731 7265 3.434940 ACTTCAGTACAACCCCATTCC 57.565 47.619 0.00 0.00 0.00 3.01
3768 7302 8.729805 AAAATGCTAAAATTTTCCACACTTCA 57.270 26.923 6.72 0.00 35.33 3.02
3781 7315 8.961294 TTTCCACACTTCATGAAATTTCAAAT 57.039 26.923 23.91 6.72 41.13 2.32
3783 7317 7.954835 TCCACACTTCATGAAATTTCAAATCT 58.045 30.769 23.91 5.59 41.13 2.40
3784 7318 7.868922 TCCACACTTCATGAAATTTCAAATCTG 59.131 33.333 23.91 17.11 41.13 2.90
3786 7320 8.484799 CACACTTCATGAAATTTCAAATCTGTG 58.515 33.333 23.91 24.90 41.13 3.66
3864 7398 9.671279 AATCCATGAAATTTTTCCCACTATTTC 57.329 29.630 0.00 0.00 37.46 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.565974 AGCTAGTATTCCATCTCCCATCTTA 58.434 40.000 0.00 0.00 0.00 2.10
3 4 5.410602 AGCTAGTATTCCATCTCCCATCTT 58.589 41.667 0.00 0.00 0.00 2.40
4 5 5.022227 AGCTAGTATTCCATCTCCCATCT 57.978 43.478 0.00 0.00 0.00 2.90
7 8 6.520742 GCAATTAGCTAGTATTCCATCTCCCA 60.521 42.308 0.00 0.00 41.15 4.37
8 9 5.877564 GCAATTAGCTAGTATTCCATCTCCC 59.122 44.000 0.00 0.00 41.15 4.30
9 10 5.877564 GGCAATTAGCTAGTATTCCATCTCC 59.122 44.000 0.00 0.00 44.79 3.71
10 11 5.877564 GGGCAATTAGCTAGTATTCCATCTC 59.122 44.000 0.00 0.00 44.79 2.75
11 12 5.310594 TGGGCAATTAGCTAGTATTCCATCT 59.689 40.000 0.00 0.00 44.79 2.90
12 13 5.560724 TGGGCAATTAGCTAGTATTCCATC 58.439 41.667 0.00 0.00 44.79 3.51
13 14 5.582950 TGGGCAATTAGCTAGTATTCCAT 57.417 39.130 0.00 0.00 44.79 3.41
14 15 5.316167 CATGGGCAATTAGCTAGTATTCCA 58.684 41.667 8.82 8.82 44.79 3.53
15 16 4.156739 GCATGGGCAATTAGCTAGTATTCC 59.843 45.833 0.00 0.00 44.79 3.01
16 17 4.142816 CGCATGGGCAATTAGCTAGTATTC 60.143 45.833 0.00 0.00 44.79 1.75
17 18 3.753272 CGCATGGGCAATTAGCTAGTATT 59.247 43.478 0.00 0.00 44.79 1.89
18 19 3.244561 ACGCATGGGCAATTAGCTAGTAT 60.245 43.478 10.10 0.00 44.79 2.12
19 20 2.104111 ACGCATGGGCAATTAGCTAGTA 59.896 45.455 10.10 0.00 44.79 1.82
20 21 1.134098 ACGCATGGGCAATTAGCTAGT 60.134 47.619 10.10 0.00 44.79 2.57
21 22 1.597742 ACGCATGGGCAATTAGCTAG 58.402 50.000 10.10 0.00 44.79 3.42
22 23 1.675483 CAACGCATGGGCAATTAGCTA 59.325 47.619 10.10 0.00 44.79 3.32
23 24 0.457035 CAACGCATGGGCAATTAGCT 59.543 50.000 10.10 0.00 44.79 3.32
24 25 1.147557 GCAACGCATGGGCAATTAGC 61.148 55.000 10.10 1.67 41.24 3.09
25 26 0.173029 TGCAACGCATGGGCAATTAG 59.827 50.000 10.10 0.00 41.24 1.73
26 27 0.605083 TTGCAACGCATGGGCAATTA 59.395 45.000 10.10 0.00 42.12 1.40
27 28 1.370437 TTGCAACGCATGGGCAATT 59.630 47.368 10.10 0.00 42.12 2.32
28 29 3.058218 TTGCAACGCATGGGCAAT 58.942 50.000 10.10 0.00 42.12 3.56
30 31 2.261981 CATTGCAACGCATGGGCA 59.738 55.556 10.10 0.00 38.76 5.36
31 32 2.509786 CCATTGCAACGCATGGGC 60.510 61.111 10.10 0.00 38.76 5.36
32 33 2.184836 CCCATTGCAACGCATGGG 59.815 61.111 19.00 19.00 44.31 4.00
33 34 1.153784 GTCCCATTGCAACGCATGG 60.154 57.895 0.00 5.42 38.76 3.66
34 35 0.173935 ATGTCCCATTGCAACGCATG 59.826 50.000 0.00 0.00 38.76 4.06
35 36 0.173935 CATGTCCCATTGCAACGCAT 59.826 50.000 0.00 0.00 38.76 4.73
36 37 1.585517 CATGTCCCATTGCAACGCA 59.414 52.632 0.00 0.00 36.47 5.24
37 38 1.806758 GCATGTCCCATTGCAACGC 60.807 57.895 0.00 0.00 38.72 4.84
38 39 1.585517 TGCATGTCCCATTGCAACG 59.414 52.632 0.00 0.00 45.30 4.10
41 42 0.540133 AGTGTGCATGTCCCATTGCA 60.540 50.000 0.00 0.00 46.03 4.08
42 43 1.462616 TAGTGTGCATGTCCCATTGC 58.537 50.000 0.00 0.00 39.33 3.56
43 44 3.695556 TGATTAGTGTGCATGTCCCATTG 59.304 43.478 0.00 0.00 0.00 2.82
44 45 3.966979 TGATTAGTGTGCATGTCCCATT 58.033 40.909 0.00 0.00 0.00 3.16
45 46 3.650281 TGATTAGTGTGCATGTCCCAT 57.350 42.857 0.00 0.00 0.00 4.00
46 47 3.281158 CATGATTAGTGTGCATGTCCCA 58.719 45.455 0.00 0.00 35.78 4.37
47 48 3.282021 ACATGATTAGTGTGCATGTCCC 58.718 45.455 0.00 0.00 46.93 4.46
51 52 4.632688 TGTCAGACATGATTAGTGTGCATG 59.367 41.667 0.00 0.00 43.70 4.06
52 53 4.835678 TGTCAGACATGATTAGTGTGCAT 58.164 39.130 0.00 0.00 37.87 3.96
53 54 4.270245 TGTCAGACATGATTAGTGTGCA 57.730 40.909 0.00 0.00 37.87 4.57
54 55 7.116948 GGTATATGTCAGACATGATTAGTGTGC 59.883 40.741 24.15 0.96 39.53 4.57
55 56 8.363390 AGGTATATGTCAGACATGATTAGTGTG 58.637 37.037 24.15 0.00 39.53 3.82
70 71 8.679344 ATATGATGGGTGTAAGGTATATGTCA 57.321 34.615 0.00 0.00 0.00 3.58
71 72 9.601217 GAATATGATGGGTGTAAGGTATATGTC 57.399 37.037 0.00 0.00 0.00 3.06
237 240 8.598202 TGTCCTAACCATGTCTACATTAACTA 57.402 34.615 0.00 0.00 33.61 2.24
261 265 1.618343 GTCCCTTCAACCCAAACCATG 59.382 52.381 0.00 0.00 0.00 3.66
297 301 4.866486 CCCTACCATTAAACGAGTGTGTAC 59.134 45.833 0.00 0.00 0.00 2.90
314 318 9.586435 CAAATCAAATCTTACAAAATCCCTACC 57.414 33.333 0.00 0.00 0.00 3.18
371 375 8.877864 ACATTACCAAATCCTCAAGTAAATCA 57.122 30.769 0.00 0.00 0.00 2.57
390 394 9.097257 CCATACCCAAATCAAATCAAACATTAC 57.903 33.333 0.00 0.00 0.00 1.89
394 398 5.545723 ACCCATACCCAAATCAAATCAAACA 59.454 36.000 0.00 0.00 0.00 2.83
413 417 7.177392 CACCTTTTCATTTCTTCTCTTACCCAT 59.823 37.037 0.00 0.00 0.00 4.00
416 420 7.228706 TCACACCTTTTCATTTCTTCTCTTACC 59.771 37.037 0.00 0.00 0.00 2.85
430 434 5.186797 ACCTCAACAAAATCACACCTTTTCA 59.813 36.000 0.00 0.00 0.00 2.69
492 496 0.531532 CAGCCCTCGCTCGAAATCAT 60.532 55.000 0.00 0.00 43.95 2.45
499 503 2.279784 GGATTCAGCCCTCGCTCG 60.280 66.667 0.00 0.00 43.95 5.03
567 572 9.219603 CTCTACTCATACTCAAACCAAATCAAA 57.780 33.333 0.00 0.00 0.00 2.69
568 573 8.593679 TCTCTACTCATACTCAAACCAAATCAA 58.406 33.333 0.00 0.00 0.00 2.57
569 574 8.134202 TCTCTACTCATACTCAAACCAAATCA 57.866 34.615 0.00 0.00 0.00 2.57
570 575 9.436957 TTTCTCTACTCATACTCAAACCAAATC 57.563 33.333 0.00 0.00 0.00 2.17
571 576 9.442047 CTTTCTCTACTCATACTCAAACCAAAT 57.558 33.333 0.00 0.00 0.00 2.32
572 577 8.647796 TCTTTCTCTACTCATACTCAAACCAAA 58.352 33.333 0.00 0.00 0.00 3.28
573 578 8.190326 TCTTTCTCTACTCATACTCAAACCAA 57.810 34.615 0.00 0.00 0.00 3.67
574 579 7.776618 TCTTTCTCTACTCATACTCAAACCA 57.223 36.000 0.00 0.00 0.00 3.67
649 664 3.393687 TCTTACCTTGCCCTGTCCATAT 58.606 45.455 0.00 0.00 0.00 1.78
939 957 4.486090 CGGATTCCGTCCTCACTATATTG 58.514 47.826 17.08 0.00 45.46 1.90
978 996 1.741770 GCTAAGCTGGTGTGACGGG 60.742 63.158 0.00 0.00 0.00 5.28
1113 1131 1.529244 GGGTGCATGGGGATAGTGC 60.529 63.158 0.00 0.00 39.26 4.40
1116 1134 1.145531 TGAATGGGTGCATGGGGATAG 59.854 52.381 0.00 0.00 0.00 2.08
1118 1136 0.564171 ATGAATGGGTGCATGGGGAT 59.436 50.000 0.00 0.00 0.00 3.85
1120 1138 0.754472 GAATGAATGGGTGCATGGGG 59.246 55.000 0.00 0.00 0.00 4.96
1130 1148 1.097232 TCTGCGCCAAGAATGAATGG 58.903 50.000 4.18 0.00 39.80 3.16
1132 1150 2.646930 TGATCTGCGCCAAGAATGAAT 58.353 42.857 4.18 0.00 0.00 2.57
1196 1214 3.115892 GTCCACCGCGCGATTTGA 61.116 61.111 34.63 18.75 0.00 2.69
1197 1215 2.677003 AAGTCCACCGCGCGATTTG 61.677 57.895 34.63 23.64 0.00 2.32
1210 1228 2.281484 TGCTCAACCGCCAAGTCC 60.281 61.111 0.00 0.00 0.00 3.85
1216 1234 3.423154 CGTTCCTGCTCAACCGCC 61.423 66.667 0.00 0.00 0.00 6.13
1287 1311 3.092511 ATGGACCAGGGCAGCGAT 61.093 61.111 0.00 0.00 0.00 4.58
1412 1436 0.535797 GTAGTTCCTCTTCCCGGTGG 59.464 60.000 0.00 0.00 0.00 4.61
1528 1574 4.425180 TTTGCAGGTCAAGGTAGTGTAA 57.575 40.909 0.00 0.00 35.84 2.41
1529 1575 4.202419 ACATTTGCAGGTCAAGGTAGTGTA 60.202 41.667 0.00 0.00 35.84 2.90
1530 1576 3.149196 CATTTGCAGGTCAAGGTAGTGT 58.851 45.455 0.00 0.00 35.84 3.55
1667 1727 2.804986 TAGCTGAAATGCATGGGTGA 57.195 45.000 0.00 0.00 34.99 4.02
1669 1729 6.518493 CATAAATTAGCTGAAATGCATGGGT 58.482 36.000 0.00 0.00 34.99 4.51
1672 1732 5.986741 TGGCATAAATTAGCTGAAATGCATG 59.013 36.000 18.88 10.44 41.08 4.06
1673 1733 6.164417 TGGCATAAATTAGCTGAAATGCAT 57.836 33.333 18.88 0.00 41.08 3.96
1676 1736 8.693504 CGTAAATGGCATAAATTAGCTGAAATG 58.306 33.333 0.00 0.00 0.00 2.32
1677 1737 8.629158 TCGTAAATGGCATAAATTAGCTGAAAT 58.371 29.630 0.00 0.00 0.00 2.17
1694 1762 3.930229 TGAGTTCAACCGATCGTAAATGG 59.070 43.478 15.09 0.00 0.00 3.16
1700 1768 1.340248 ACAGTGAGTTCAACCGATCGT 59.660 47.619 15.09 0.00 0.00 3.73
1733 1819 2.046285 GCCCTGTTTGACCATCCCG 61.046 63.158 0.00 0.00 0.00 5.14
1740 1830 3.243401 CCTTGTACAAAGCCCTGTTTGAC 60.243 47.826 10.03 0.00 39.40 3.18
1914 2333 0.661552 CGATCGCGGAGTAGGAGAAA 59.338 55.000 6.13 0.00 0.00 2.52
2249 2769 3.069586 CCATGGAGTATGAGTAGGCGAAA 59.930 47.826 5.56 0.00 39.21 3.46
2292 2812 5.706833 TGTATGTGAATCTTTGTGACATGCT 59.293 36.000 0.00 0.00 32.70 3.79
2349 2869 1.479323 ACACGCCATTAGTGACCGTAT 59.521 47.619 3.20 0.00 41.83 3.06
2444 3069 3.717294 GGCCGTGGTGGTGGAGAT 61.717 66.667 0.00 0.00 41.21 2.75
3063 5502 6.683090 TTTTATGCGCAAACATAAGTTGAC 57.317 33.333 17.11 0.00 42.02 3.18
3089 5541 6.086765 CACTTCTTTATCGACAAAATGCACAC 59.913 38.462 0.00 0.00 0.00 3.82
3128 5580 4.856801 CAATCTCACCCGCCCCCG 62.857 72.222 0.00 0.00 0.00 5.73
3129 5581 4.506255 CCAATCTCACCCGCCCCC 62.506 72.222 0.00 0.00 0.00 5.40
3131 5583 3.645268 AAGCCAATCTCACCCGCCC 62.645 63.158 0.00 0.00 0.00 6.13
3132 5584 1.678970 AAAGCCAATCTCACCCGCC 60.679 57.895 0.00 0.00 0.00 6.13
3133 5585 1.508088 CAAAGCCAATCTCACCCGC 59.492 57.895 0.00 0.00 0.00 6.13
3134 5586 1.508088 GCAAAGCCAATCTCACCCG 59.492 57.895 0.00 0.00 0.00 5.28
3188 5654 2.359981 TCATCGGACGAAGGGAGTAT 57.640 50.000 0.00 0.00 0.00 2.12
3190 5656 0.818296 CTTCATCGGACGAAGGGAGT 59.182 55.000 5.94 0.00 36.94 3.85
3191 5657 1.066303 CTCTTCATCGGACGAAGGGAG 59.934 57.143 7.93 0.00 42.57 4.30
3192 5658 1.103803 CTCTTCATCGGACGAAGGGA 58.896 55.000 7.93 0.00 42.57 4.20
3193 5659 0.818296 ACTCTTCATCGGACGAAGGG 59.182 55.000 11.86 11.86 44.96 3.95
3195 5661 2.638556 ACACTCTTCATCGGACGAAG 57.361 50.000 7.47 7.47 41.05 3.79
3196 5662 2.159612 CGTACACTCTTCATCGGACGAA 60.160 50.000 0.00 0.00 0.00 3.85
3197 5663 1.395954 CGTACACTCTTCATCGGACGA 59.604 52.381 0.00 0.00 0.00 4.20
3198 5664 1.129998 ACGTACACTCTTCATCGGACG 59.870 52.381 0.00 0.00 35.30 4.79
3199 5665 2.915738 ACGTACACTCTTCATCGGAC 57.084 50.000 0.00 0.00 0.00 4.79
3200 5666 3.571571 CAAACGTACACTCTTCATCGGA 58.428 45.455 0.00 0.00 0.00 4.55
3201 5667 2.666508 CCAAACGTACACTCTTCATCGG 59.333 50.000 0.00 0.00 0.00 4.18
3202 5668 2.092211 GCCAAACGTACACTCTTCATCG 59.908 50.000 0.00 0.00 0.00 3.84
3203 5669 3.326747 AGCCAAACGTACACTCTTCATC 58.673 45.455 0.00 0.00 0.00 2.92
3204 5670 3.402628 AGCCAAACGTACACTCTTCAT 57.597 42.857 0.00 0.00 0.00 2.57
3205 5671 2.902705 AGCCAAACGTACACTCTTCA 57.097 45.000 0.00 0.00 0.00 3.02
3206 5672 3.128349 TGAAGCCAAACGTACACTCTTC 58.872 45.455 0.00 0.00 0.00 2.87
3207 5673 3.188159 TGAAGCCAAACGTACACTCTT 57.812 42.857 0.00 0.00 0.00 2.85
3208 5674 2.902705 TGAAGCCAAACGTACACTCT 57.097 45.000 0.00 0.00 0.00 3.24
3209 5675 3.955771 TTTGAAGCCAAACGTACACTC 57.044 42.857 0.00 0.00 37.36 3.51
3210 5676 4.911514 AATTTGAAGCCAAACGTACACT 57.088 36.364 0.00 0.00 44.16 3.55
3211 5677 4.801516 ACAAATTTGAAGCCAAACGTACAC 59.198 37.500 24.64 0.00 44.16 2.90
3212 5678 5.000012 ACAAATTTGAAGCCAAACGTACA 58.000 34.783 24.64 0.00 44.16 2.90
3213 5679 4.443063 GGACAAATTTGAAGCCAAACGTAC 59.557 41.667 24.64 0.00 44.16 3.67
3214 5680 4.098044 TGGACAAATTTGAAGCCAAACGTA 59.902 37.500 24.64 3.67 44.16 3.57
3215 5681 3.118956 TGGACAAATTTGAAGCCAAACGT 60.119 39.130 24.64 0.00 44.16 3.99
3216 5682 3.452474 TGGACAAATTTGAAGCCAAACG 58.548 40.909 24.64 0.00 44.16 3.60
3217 5683 7.489574 TTTATGGACAAATTTGAAGCCAAAC 57.510 32.000 24.64 5.88 44.16 2.93
3218 5684 7.989741 TCTTTTATGGACAAATTTGAAGCCAAA 59.010 29.630 24.64 17.90 45.28 3.28
3219 5685 7.504403 TCTTTTATGGACAAATTTGAAGCCAA 58.496 30.769 24.64 14.27 33.72 4.52
3220 5686 7.060383 TCTTTTATGGACAAATTTGAAGCCA 57.940 32.000 24.64 24.10 34.19 4.75
3221 5687 7.116805 CACTCTTTTATGGACAAATTTGAAGCC 59.883 37.037 24.64 19.99 0.00 4.35
3222 5688 7.653311 ACACTCTTTTATGGACAAATTTGAAGC 59.347 33.333 24.64 12.44 0.00 3.86
3224 5690 9.959749 GTACACTCTTTTATGGACAAATTTGAA 57.040 29.630 24.64 9.90 29.34 2.69
3225 5691 9.126151 TGTACACTCTTTTATGGACAAATTTGA 57.874 29.630 24.64 2.69 36.71 2.69
3226 5692 9.912634 ATGTACACTCTTTTATGGACAAATTTG 57.087 29.630 16.67 16.67 42.86 2.32
3228 5694 9.520515 AGATGTACACTCTTTTATGGACAAATT 57.479 29.630 0.00 0.00 42.86 1.82
3231 5697 9.817809 GATAGATGTACACTCTTTTATGGACAA 57.182 33.333 0.00 0.00 42.86 3.18
3232 5698 9.201989 AGATAGATGTACACTCTTTTATGGACA 57.798 33.333 0.00 0.00 43.74 4.02
3235 5701 9.482627 GGAAGATAGATGTACACTCTTTTATGG 57.517 37.037 0.00 0.00 0.00 2.74
3236 5702 9.482627 GGGAAGATAGATGTACACTCTTTTATG 57.517 37.037 0.00 0.00 0.00 1.90
3237 5703 9.213777 TGGGAAGATAGATGTACACTCTTTTAT 57.786 33.333 0.00 0.00 0.00 1.40
3238 5704 8.603898 TGGGAAGATAGATGTACACTCTTTTA 57.396 34.615 0.00 0.00 0.00 1.52
3239 5705 7.496346 TGGGAAGATAGATGTACACTCTTTT 57.504 36.000 0.00 0.00 0.00 2.27
3240 5706 7.496346 TTGGGAAGATAGATGTACACTCTTT 57.504 36.000 0.00 0.00 0.00 2.52
3241 5707 7.504403 CATTGGGAAGATAGATGTACACTCTT 58.496 38.462 0.00 4.67 0.00 2.85
3242 5708 6.463614 GCATTGGGAAGATAGATGTACACTCT 60.464 42.308 0.00 5.42 0.00 3.24
3243 5709 5.698545 GCATTGGGAAGATAGATGTACACTC 59.301 44.000 0.00 0.00 0.00 3.51
3244 5710 5.130975 TGCATTGGGAAGATAGATGTACACT 59.869 40.000 0.00 0.13 0.00 3.55
3245 5711 5.237344 GTGCATTGGGAAGATAGATGTACAC 59.763 44.000 0.00 0.00 34.72 2.90
3246 5712 5.130975 AGTGCATTGGGAAGATAGATGTACA 59.869 40.000 0.00 0.00 36.30 2.90
3247 5713 5.615289 AGTGCATTGGGAAGATAGATGTAC 58.385 41.667 0.00 0.00 34.77 2.90
3248 5714 5.894298 AGTGCATTGGGAAGATAGATGTA 57.106 39.130 0.00 0.00 0.00 2.29
3249 5715 4.785346 AGTGCATTGGGAAGATAGATGT 57.215 40.909 0.00 0.00 0.00 3.06
3250 5716 5.591472 TCAAAGTGCATTGGGAAGATAGATG 59.409 40.000 0.00 0.00 0.00 2.90
3251 5717 5.759059 TCAAAGTGCATTGGGAAGATAGAT 58.241 37.500 0.00 0.00 0.00 1.98
3252 5718 5.178096 TCAAAGTGCATTGGGAAGATAGA 57.822 39.130 0.00 0.00 0.00 1.98
3253 5719 5.416952 ACTTCAAAGTGCATTGGGAAGATAG 59.583 40.000 21.95 4.89 37.98 2.08
3254 5720 5.324409 ACTTCAAAGTGCATTGGGAAGATA 58.676 37.500 21.95 0.00 37.98 1.98
3255 5721 4.154942 ACTTCAAAGTGCATTGGGAAGAT 58.845 39.130 21.95 9.57 37.98 2.40
3256 5722 3.565307 ACTTCAAAGTGCATTGGGAAGA 58.435 40.909 21.95 0.96 37.98 2.87
3257 5723 4.761739 TCTACTTCAAAGTGCATTGGGAAG 59.238 41.667 16.59 16.59 40.07 3.46
3258 5724 4.724399 TCTACTTCAAAGTGCATTGGGAA 58.276 39.130 5.66 0.00 40.07 3.97
3259 5725 4.365514 TCTACTTCAAAGTGCATTGGGA 57.634 40.909 5.66 0.00 40.07 4.37
3260 5726 5.452078 TTTCTACTTCAAAGTGCATTGGG 57.548 39.130 5.66 0.00 40.07 4.12
3282 5748 4.142730 GCGTGATGAGAGAGAAGCATTTTT 60.143 41.667 0.00 0.00 0.00 1.94
3283 5749 3.373439 GCGTGATGAGAGAGAAGCATTTT 59.627 43.478 0.00 0.00 0.00 1.82
3284 5750 2.935201 GCGTGATGAGAGAGAAGCATTT 59.065 45.455 0.00 0.00 0.00 2.32
3285 5751 2.548875 GCGTGATGAGAGAGAAGCATT 58.451 47.619 0.00 0.00 0.00 3.56
3286 5752 1.535649 CGCGTGATGAGAGAGAAGCAT 60.536 52.381 0.00 0.00 0.00 3.79
3287 5753 0.179153 CGCGTGATGAGAGAGAAGCA 60.179 55.000 0.00 0.00 0.00 3.91
3288 5754 0.869454 CCGCGTGATGAGAGAGAAGC 60.869 60.000 4.92 0.00 0.00 3.86
3289 5755 0.453793 ACCGCGTGATGAGAGAGAAG 59.546 55.000 4.92 0.00 0.00 2.85
3290 5756 1.746470 TACCGCGTGATGAGAGAGAA 58.254 50.000 4.92 0.00 0.00 2.87
3291 5757 1.746470 TTACCGCGTGATGAGAGAGA 58.254 50.000 4.92 0.00 0.00 3.10
3292 5758 2.033424 TGATTACCGCGTGATGAGAGAG 59.967 50.000 4.92 0.00 0.00 3.20
3293 5759 2.021457 TGATTACCGCGTGATGAGAGA 58.979 47.619 4.92 0.00 0.00 3.10
3294 5760 2.492019 TGATTACCGCGTGATGAGAG 57.508 50.000 4.92 0.00 0.00 3.20
3295 5761 2.425668 TCTTGATTACCGCGTGATGAGA 59.574 45.455 4.92 0.00 0.00 3.27
3296 5762 2.535984 GTCTTGATTACCGCGTGATGAG 59.464 50.000 4.92 0.00 0.00 2.90
3297 5763 2.536365 GTCTTGATTACCGCGTGATGA 58.464 47.619 4.92 0.00 0.00 2.92
3298 5764 1.593006 GGTCTTGATTACCGCGTGATG 59.407 52.381 4.92 0.00 0.00 3.07
3299 5765 1.206132 TGGTCTTGATTACCGCGTGAT 59.794 47.619 4.92 0.00 40.08 3.06
3300 5766 0.604073 TGGTCTTGATTACCGCGTGA 59.396 50.000 4.92 0.00 40.08 4.35
3301 5767 1.434555 TTGGTCTTGATTACCGCGTG 58.565 50.000 4.92 0.00 40.08 5.34
3302 5768 2.396590 ATTGGTCTTGATTACCGCGT 57.603 45.000 4.92 0.00 40.08 6.01
3303 5769 3.619483 TGTTATTGGTCTTGATTACCGCG 59.381 43.478 0.00 0.00 40.08 6.46
3304 5770 5.751243 ATGTTATTGGTCTTGATTACCGC 57.249 39.130 0.00 0.00 40.08 5.68
3305 5771 9.498307 GTAAAATGTTATTGGTCTTGATTACCG 57.502 33.333 0.00 0.00 40.08 4.02
3314 5780 8.836413 CGACCATATGTAAAATGTTATTGGTCT 58.164 33.333 18.28 0.00 38.85 3.85
3315 5781 7.589954 GCGACCATATGTAAAATGTTATTGGTC 59.410 37.037 14.26 14.26 37.97 4.02
3316 5782 7.284489 AGCGACCATATGTAAAATGTTATTGGT 59.716 33.333 1.24 0.00 0.00 3.67
3317 5783 7.648142 AGCGACCATATGTAAAATGTTATTGG 58.352 34.615 1.24 0.00 0.00 3.16
3318 5784 9.515020 AAAGCGACCATATGTAAAATGTTATTG 57.485 29.630 1.24 0.00 0.00 1.90
3331 5797 9.708222 GCATATAGAAATTAAAGCGACCATATG 57.292 33.333 0.00 0.00 0.00 1.78
3332 5798 9.448438 TGCATATAGAAATTAAAGCGACCATAT 57.552 29.630 0.00 0.00 0.00 1.78
3333 5799 8.717821 GTGCATATAGAAATTAAAGCGACCATA 58.282 33.333 0.00 0.00 0.00 2.74
3334 5800 7.445402 AGTGCATATAGAAATTAAAGCGACCAT 59.555 33.333 0.00 0.00 0.00 3.55
3335 5801 6.765989 AGTGCATATAGAAATTAAAGCGACCA 59.234 34.615 0.00 0.00 0.00 4.02
3336 5802 7.190920 AGTGCATATAGAAATTAAAGCGACC 57.809 36.000 0.00 0.00 0.00 4.79
3337 5803 9.798885 CTAAGTGCATATAGAAATTAAAGCGAC 57.201 33.333 0.00 0.00 0.00 5.19
3338 5804 9.542462 ACTAAGTGCATATAGAAATTAAAGCGA 57.458 29.630 13.74 0.00 0.00 4.93
3346 5812 9.071276 CCCAATGAACTAAGTGCATATAGAAAT 57.929 33.333 13.74 3.90 29.16 2.17
3347 5813 7.502226 CCCCAATGAACTAAGTGCATATAGAAA 59.498 37.037 13.74 2.15 29.16 2.52
3348 5814 6.998074 CCCCAATGAACTAAGTGCATATAGAA 59.002 38.462 13.74 2.42 29.16 2.10
3349 5815 6.465751 CCCCCAATGAACTAAGTGCATATAGA 60.466 42.308 13.74 0.00 29.16 1.98
3350 5816 5.707298 CCCCCAATGAACTAAGTGCATATAG 59.293 44.000 7.07 7.07 29.16 1.31
3351 5817 5.133660 ACCCCCAATGAACTAAGTGCATATA 59.866 40.000 0.00 0.00 29.16 0.86
3352 5818 4.079212 ACCCCCAATGAACTAAGTGCATAT 60.079 41.667 0.00 0.00 29.16 1.78
3353 5819 3.268334 ACCCCCAATGAACTAAGTGCATA 59.732 43.478 0.00 0.00 29.16 3.14
3354 5820 2.042979 ACCCCCAATGAACTAAGTGCAT 59.957 45.455 0.00 0.00 32.34 3.96
3355 5821 1.427368 ACCCCCAATGAACTAAGTGCA 59.573 47.619 0.00 0.00 0.00 4.57
3356 5822 2.215942 ACCCCCAATGAACTAAGTGC 57.784 50.000 0.00 0.00 0.00 4.40
3357 5823 2.825532 CCAACCCCCAATGAACTAAGTG 59.174 50.000 0.00 0.00 0.00 3.16
3358 5824 2.225267 CCCAACCCCCAATGAACTAAGT 60.225 50.000 0.00 0.00 0.00 2.24
3359 5825 2.225267 ACCCAACCCCCAATGAACTAAG 60.225 50.000 0.00 0.00 0.00 2.18
3360 5826 1.790157 ACCCAACCCCCAATGAACTAA 59.210 47.619 0.00 0.00 0.00 2.24
3361 5827 1.462426 ACCCAACCCCCAATGAACTA 58.538 50.000 0.00 0.00 0.00 2.24
3362 5828 1.462426 TACCCAACCCCCAATGAACT 58.538 50.000 0.00 0.00 0.00 3.01
3363 5829 2.312424 TTACCCAACCCCCAATGAAC 57.688 50.000 0.00 0.00 0.00 3.18
3364 5830 3.569135 AATTACCCAACCCCCAATGAA 57.431 42.857 0.00 0.00 0.00 2.57
3365 5831 4.694280 TTAATTACCCAACCCCCAATGA 57.306 40.909 0.00 0.00 0.00 2.57
3366 5832 5.763876 TTTTAATTACCCAACCCCCAATG 57.236 39.130 0.00 0.00 0.00 2.82
3367 5833 5.251932 CCTTTTTAATTACCCAACCCCCAAT 59.748 40.000 0.00 0.00 0.00 3.16
3368 5834 4.597940 CCTTTTTAATTACCCAACCCCCAA 59.402 41.667 0.00 0.00 0.00 4.12
3369 5835 4.140519 TCCTTTTTAATTACCCAACCCCCA 60.141 41.667 0.00 0.00 0.00 4.96
3370 5836 4.427637 TCCTTTTTAATTACCCAACCCCC 58.572 43.478 0.00 0.00 0.00 5.40
3371 5837 5.335261 TCTCCTTTTTAATTACCCAACCCC 58.665 41.667 0.00 0.00 0.00 4.95
3372 5838 6.152323 GTCTCTCCTTTTTAATTACCCAACCC 59.848 42.308 0.00 0.00 0.00 4.11
3373 5839 6.717997 TGTCTCTCCTTTTTAATTACCCAACC 59.282 38.462 0.00 0.00 0.00 3.77
3374 5840 7.754851 TGTCTCTCCTTTTTAATTACCCAAC 57.245 36.000 0.00 0.00 0.00 3.77
3375 5841 8.390921 AGATGTCTCTCCTTTTTAATTACCCAA 58.609 33.333 0.00 0.00 0.00 4.12
3376 5842 7.928873 AGATGTCTCTCCTTTTTAATTACCCA 58.071 34.615 0.00 0.00 0.00 4.51
3377 5843 8.809468 AAGATGTCTCTCCTTTTTAATTACCC 57.191 34.615 0.00 0.00 0.00 3.69
3384 5850 8.299570 GCATTGAAAAGATGTCTCTCCTTTTTA 58.700 33.333 0.00 0.00 39.40 1.52
3385 5851 7.150640 GCATTGAAAAGATGTCTCTCCTTTTT 58.849 34.615 0.00 0.00 39.40 1.94
3386 5852 6.266103 TGCATTGAAAAGATGTCTCTCCTTTT 59.734 34.615 0.00 0.00 41.25 2.27
3387 5853 5.771666 TGCATTGAAAAGATGTCTCTCCTTT 59.228 36.000 0.00 0.00 0.00 3.11
3388 5854 5.319453 TGCATTGAAAAGATGTCTCTCCTT 58.681 37.500 0.00 0.00 0.00 3.36
3389 5855 4.914983 TGCATTGAAAAGATGTCTCTCCT 58.085 39.130 0.00 0.00 0.00 3.69
3390 5856 5.831702 ATGCATTGAAAAGATGTCTCTCC 57.168 39.130 0.00 0.00 0.00 3.71
3391 5857 8.530269 AAAAATGCATTGAAAAGATGTCTCTC 57.470 30.769 13.82 0.00 0.00 3.20
3413 5879 8.893563 AGGACAAAATATGGAGTGGATAAAAA 57.106 30.769 0.00 0.00 0.00 1.94
3414 5880 9.983024 TTAGGACAAAATATGGAGTGGATAAAA 57.017 29.630 0.00 0.00 0.00 1.52
3415 5881 9.983024 TTTAGGACAAAATATGGAGTGGATAAA 57.017 29.630 0.00 0.00 0.00 1.40
3416 5882 9.983024 TTTTAGGACAAAATATGGAGTGGATAA 57.017 29.630 0.00 0.00 0.00 1.75
3418 5884 9.492730 AATTTTAGGACAAAATATGGAGTGGAT 57.507 29.630 0.00 0.00 30.38 3.41
3419 5885 8.893563 AATTTTAGGACAAAATATGGAGTGGA 57.106 30.769 0.00 0.00 30.38 4.02
3420 5886 9.586435 GAAATTTTAGGACAAAATATGGAGTGG 57.414 33.333 0.00 0.00 30.38 4.00
3443 5909 9.378551 GTCTGGTGAAATGTGTACATATAGAAA 57.621 33.333 5.45 0.00 35.10 2.52
3444 5910 7.704899 CGTCTGGTGAAATGTGTACATATAGAA 59.295 37.037 5.45 0.00 35.10 2.10
3445 5911 7.200455 CGTCTGGTGAAATGTGTACATATAGA 58.800 38.462 5.45 1.40 35.10 1.98
3446 5912 6.420903 CCGTCTGGTGAAATGTGTACATATAG 59.579 42.308 5.45 0.00 35.10 1.31
3447 5913 6.277605 CCGTCTGGTGAAATGTGTACATATA 58.722 40.000 5.45 0.00 35.10 0.86
3448 5914 5.116180 CCGTCTGGTGAAATGTGTACATAT 58.884 41.667 0.00 0.00 35.10 1.78
3449 5915 4.500127 CCGTCTGGTGAAATGTGTACATA 58.500 43.478 0.00 0.00 35.10 2.29
3450 5916 3.334691 CCGTCTGGTGAAATGTGTACAT 58.665 45.455 0.00 0.00 38.41 2.29
3451 5917 2.761559 CCGTCTGGTGAAATGTGTACA 58.238 47.619 0.00 0.00 0.00 2.90
3464 5930 0.460311 GACATACTCCCACCGTCTGG 59.540 60.000 0.00 0.00 40.26 3.86
3465 5931 1.475403 AGACATACTCCCACCGTCTG 58.525 55.000 0.00 0.00 35.67 3.51
3466 5932 3.223435 CATAGACATACTCCCACCGTCT 58.777 50.000 0.00 0.00 40.03 4.18
3467 5933 2.296471 CCATAGACATACTCCCACCGTC 59.704 54.545 0.00 0.00 0.00 4.79
3468 5934 2.317040 CCATAGACATACTCCCACCGT 58.683 52.381 0.00 0.00 0.00 4.83
3469 5935 2.317040 ACCATAGACATACTCCCACCG 58.683 52.381 0.00 0.00 0.00 4.94
3470 5936 3.967987 AGAACCATAGACATACTCCCACC 59.032 47.826 0.00 0.00 0.00 4.61
3471 5937 5.360591 CAAGAACCATAGACATACTCCCAC 58.639 45.833 0.00 0.00 0.00 4.61
3472 5938 4.141711 GCAAGAACCATAGACATACTCCCA 60.142 45.833 0.00 0.00 0.00 4.37
3473 5939 4.101741 AGCAAGAACCATAGACATACTCCC 59.898 45.833 0.00 0.00 0.00 4.30
3474 5940 5.283457 AGCAAGAACCATAGACATACTCC 57.717 43.478 0.00 0.00 0.00 3.85
3475 5941 6.702282 GGTAAGCAAGAACCATAGACATACTC 59.298 42.308 0.00 0.00 35.73 2.59
3476 5942 6.156256 TGGTAAGCAAGAACCATAGACATACT 59.844 38.462 0.00 0.00 40.84 2.12
3477 5943 6.346096 TGGTAAGCAAGAACCATAGACATAC 58.654 40.000 0.00 0.00 40.84 2.39
3478 5944 6.553953 TGGTAAGCAAGAACCATAGACATA 57.446 37.500 0.00 0.00 40.84 2.29
3479 5945 5.435686 TGGTAAGCAAGAACCATAGACAT 57.564 39.130 0.00 0.00 40.84 3.06
3480 5946 4.901197 TGGTAAGCAAGAACCATAGACA 57.099 40.909 0.00 0.00 40.84 3.41
3487 5953 9.353999 CAATAAAAGTTATGGTAAGCAAGAACC 57.646 33.333 0.00 0.00 36.24 3.62
3491 5957 9.994432 CTCTCAATAAAAGTTATGGTAAGCAAG 57.006 33.333 0.00 0.00 0.00 4.01
3508 5974 9.547753 GTCTATGTTTATCAAGCCTCTCAATAA 57.452 33.333 0.00 0.00 0.00 1.40
3543 6009 0.486879 ACTCCCCCATTGCCAGAAAA 59.513 50.000 0.00 0.00 0.00 2.29
3575 6041 3.556213 CGAGACCATTTCACAAGGTGGTA 60.556 47.826 0.00 0.00 44.56 3.25
3577 6043 1.806542 CGAGACCATTTCACAAGGTGG 59.193 52.381 0.00 0.00 35.36 4.61
3595 6061 6.769134 TTACATTTGGATCTACAGACTCGA 57.231 37.500 0.00 0.00 0.00 4.04
3597 6063 6.763610 CCCTTTACATTTGGATCTACAGACTC 59.236 42.308 0.00 0.00 0.00 3.36
3647 6113 9.944376 CATTTAACTAGGAGGCTAATATTGCTA 57.056 33.333 0.00 0.00 0.00 3.49
3658 6126 6.592870 AGTTATCACCATTTAACTAGGAGGC 58.407 40.000 0.00 0.00 36.99 4.70
3674 6142 4.036852 GCCAAAGCCCATCTTAGTTATCAC 59.963 45.833 0.00 0.00 33.88 3.06
3705 6184 3.171528 GGGGTTGTACTGAAGTAGGACT 58.828 50.000 0.00 0.00 41.17 3.85
3706 6185 2.901839 TGGGGTTGTACTGAAGTAGGAC 59.098 50.000 0.00 0.00 40.95 3.85
3707 6186 3.263369 TGGGGTTGTACTGAAGTAGGA 57.737 47.619 0.00 0.00 0.00 2.94
3708 6187 4.514401 GAATGGGGTTGTACTGAAGTAGG 58.486 47.826 0.00 0.00 0.00 3.18
3709 6188 4.225267 AGGAATGGGGTTGTACTGAAGTAG 59.775 45.833 0.00 0.00 0.00 2.57
3710 6189 4.019681 CAGGAATGGGGTTGTACTGAAGTA 60.020 45.833 0.00 0.00 0.00 2.24
3711 6190 2.986728 AGGAATGGGGTTGTACTGAAGT 59.013 45.455 0.00 0.00 0.00 3.01
3712 6191 3.009033 TCAGGAATGGGGTTGTACTGAAG 59.991 47.826 0.00 0.00 31.30 3.02
3713 6192 2.983192 TCAGGAATGGGGTTGTACTGAA 59.017 45.455 0.00 0.00 31.30 3.02
3714 6193 2.626785 TCAGGAATGGGGTTGTACTGA 58.373 47.619 0.00 0.00 0.00 3.41
3715 6194 3.081804 GTTCAGGAATGGGGTTGTACTG 58.918 50.000 0.00 0.00 0.00 2.74
3717 6196 3.434940 AGTTCAGGAATGGGGTTGTAC 57.565 47.619 0.00 0.00 0.00 2.90
3720 6199 4.687901 AAAAAGTTCAGGAATGGGGTTG 57.312 40.909 0.00 0.00 0.00 3.77
3743 7277 8.729805 TGAAGTGTGGAAAATTTTAGCATTTT 57.270 26.923 2.75 3.30 38.75 1.82
3746 7280 7.669427 TCATGAAGTGTGGAAAATTTTAGCAT 58.331 30.769 2.75 0.00 0.00 3.79
3754 7288 8.961294 TTGAAATTTCATGAAGTGTGGAAAAT 57.039 26.923 21.10 0.00 37.00 1.82
3756 7290 8.961294 ATTTGAAATTTCATGAAGTGTGGAAA 57.039 26.923 21.10 8.56 37.00 3.13
3761 7295 8.415553 TCACAGATTTGAAATTTCATGAAGTGT 58.584 29.630 21.10 16.59 37.00 3.55
3837 7371 9.671279 AAATAGTGGGAAAAATTTCATGGATTC 57.329 29.630 8.06 0.00 38.92 2.52
3839 7373 9.050154 AGAAATAGTGGGAAAAATTTCATGGAT 57.950 29.630 8.06 0.00 39.63 3.41
3840 7374 8.434589 AGAAATAGTGGGAAAAATTTCATGGA 57.565 30.769 8.06 0.00 39.63 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.