Multiple sequence alignment - TraesCS7D01G195900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G195900 chr7D 100.000 3059 0 0 1 3059 152119474 152122532 0.000000e+00 5650.0
1 TraesCS7D01G195900 chr7D 81.277 1175 151 41 967 2104 151940671 151939529 0.000000e+00 887.0
2 TraesCS7D01G195900 chr7D 82.437 632 75 20 967 1574 151856654 151856035 1.260000e-143 520.0
3 TraesCS7D01G195900 chr7D 87.583 451 49 4 1655 2099 152098292 152097843 1.630000e-142 516.0
4 TraesCS7D01G195900 chr7D 81.890 635 76 25 967 1574 152099022 152098400 1.640000e-137 499.0
5 TraesCS7D01G195900 chr7D 89.896 386 36 3 2395 2778 503693343 503693727 7.620000e-136 494.0
6 TraesCS7D01G195900 chr7D 85.153 458 58 5 1655 2104 151855929 151855474 7.730000e-126 460.0
7 TraesCS7D01G195900 chr7D 85.479 365 31 6 2393 2735 184501838 184502202 8.060000e-96 361.0
8 TraesCS7D01G195900 chr7D 91.775 231 15 4 2779 3006 184502196 184502425 4.920000e-83 318.0
9 TraesCS7D01G195900 chr7D 78.616 159 34 0 1391 1549 538895309 538895151 4.170000e-19 106.0
10 TraesCS7D01G195900 chr7D 92.754 69 5 0 2986 3054 184502467 184502535 1.940000e-17 100.0
11 TraesCS7D01G195900 chr7D 94.737 38 2 0 2221 2258 152121581 152121618 3.290000e-05 60.2
12 TraesCS7D01G195900 chr7D 94.737 38 2 0 2108 2145 152121694 152121731 3.290000e-05 60.2
13 TraesCS7D01G195900 chr7A 93.457 1452 56 21 722 2159 152540119 152541545 0.000000e+00 2119.0
14 TraesCS7D01G195900 chr7A 78.616 159 34 0 1391 1549 620412451 620412293 4.170000e-19 106.0
15 TraesCS7D01G195900 chr7B 92.018 1541 59 28 722 2222 114178265 114179781 0.000000e+00 2106.0
16 TraesCS7D01G195900 chr7B 82.043 1175 140 45 967 2104 113770486 113771626 0.000000e+00 935.0
17 TraesCS7D01G195900 chr7B 85.745 463 56 6 1 461 745358822 745359276 5.930000e-132 481.0
18 TraesCS7D01G195900 chr7B 83.028 218 24 7 1863 2069 113772649 113772864 5.210000e-43 185.0
19 TraesCS7D01G195900 chr7B 77.987 159 35 0 1391 1549 581395682 581395524 1.940000e-17 100.0
20 TraesCS7D01G195900 chr2D 96.995 599 17 1 2462 3059 430008693 430009291 0.000000e+00 1005.0
21 TraesCS7D01G195900 chr2D 87.224 407 29 9 2395 2778 643672450 643672044 2.800000e-120 442.0
22 TraesCS7D01G195900 chr2D 92.093 215 15 1 2779 2991 643672076 643671862 4.960000e-78 302.0
23 TraesCS7D01G195900 chr2D 93.130 131 7 2 2249 2378 476478851 476478980 1.120000e-44 191.0
24 TraesCS7D01G195900 chr2D 95.652 69 3 0 2986 3054 643671804 643671736 8.970000e-21 111.0
25 TraesCS7D01G195900 chr2D 100.000 44 0 0 2396 2439 430008649 430008692 7.030000e-12 82.4
26 TraesCS7D01G195900 chr5B 86.909 550 67 2 3 551 641837975 641837430 2.020000e-171 612.0
27 TraesCS7D01G195900 chr1D 88.008 517 53 7 1 515 448600745 448600236 1.210000e-168 603.0
28 TraesCS7D01G195900 chr1D 84.821 560 76 7 1 552 261255793 261255235 3.450000e-154 555.0
29 TraesCS7D01G195900 chr1D 85.572 402 33 7 2394 2778 307353860 307353467 6.150000e-107 398.0
30 TraesCS7D01G195900 chr1D 89.076 238 21 4 2779 3012 307353499 307353263 1.070000e-74 291.0
31 TraesCS7D01G195900 chr1D 92.754 69 5 0 2986 3054 307353227 307353159 1.940000e-17 100.0
32 TraesCS7D01G195900 chr2A 87.824 501 51 3 3 497 767757139 767757635 2.040000e-161 579.0
33 TraesCS7D01G195900 chr2A 85.221 521 65 2 1 512 473414268 473414785 2.700000e-145 525.0
34 TraesCS7D01G195900 chr1A 85.551 526 67 4 1 517 22890636 22890111 2.680000e-150 542.0
35 TraesCS7D01G195900 chr6B 83.094 556 82 8 6 552 142805605 142805053 2.120000e-136 496.0
36 TraesCS7D01G195900 chr6A 82.709 561 89 4 1 554 73656907 73657466 2.740000e-135 492.0
37 TraesCS7D01G195900 chr6A 96.226 53 0 2 2249 2299 212310022 212309970 5.430000e-13 86.1
38 TraesCS7D01G195900 chr5D 85.749 407 36 6 2394 2778 480040307 480040713 7.890000e-111 411.0
39 TraesCS7D01G195900 chr5D 91.589 214 16 1 2780 2991 480040682 480040895 8.290000e-76 294.0
40 TraesCS7D01G195900 chr5D 83.704 135 15 6 521 652 481955714 481955584 1.490000e-23 121.0
41 TraesCS7D01G195900 chr3D 86.413 368 28 7 2433 2778 567242441 567242074 1.720000e-102 383.0
42 TraesCS7D01G195900 chr3D 88.655 238 22 4 2779 3012 567242106 567241870 4.990000e-73 285.0
43 TraesCS7D01G195900 chr3A 83.614 415 38 7 2394 2778 649044155 649043741 2.240000e-96 363.0
44 TraesCS7D01G195900 chr3A 88.235 238 23 4 2779 3012 649043773 649043537 2.320000e-71 279.0
45 TraesCS7D01G195900 chr3A 78.718 390 52 10 2400 2772 724570913 724570538 6.600000e-57 231.0
46 TraesCS7D01G195900 chr3A 89.706 68 7 0 2987 3054 649043500 649043433 1.510000e-13 87.9
47 TraesCS7D01G195900 chr5A 88.793 232 21 4 2779 3006 693655934 693656164 2.320000e-71 279.0
48 TraesCS7D01G195900 chr5A 92.222 90 6 1 2397 2485 669197040 669197129 3.200000e-25 126.0
49 TraesCS7D01G195900 chr5A 91.176 68 6 0 2985 3052 693656205 693656272 3.250000e-15 93.5
50 TraesCS7D01G195900 chr5A 82.667 75 11 2 656 729 639190390 639190317 7.080000e-07 65.8
51 TraesCS7D01G195900 chr4B 88.186 237 18 6 2779 3006 86761967 86762202 1.080000e-69 274.0
52 TraesCS7D01G195900 chr4B 86.179 246 28 3 2538 2778 86761755 86761999 8.410000e-66 261.0
53 TraesCS7D01G195900 chrUn 92.568 148 9 2 2249 2395 52773137 52773283 8.590000e-51 211.0
54 TraesCS7D01G195900 chrUn 92.568 148 9 2 2249 2395 258405912 258405766 8.590000e-51 211.0
55 TraesCS7D01G195900 chr4D 92.366 131 8 2 2249 2378 69349045 69349174 5.210000e-43 185.0
56 TraesCS7D01G195900 chr6D 91.667 132 8 3 2249 2378 299214079 299213949 2.420000e-41 180.0
57 TraesCS7D01G195900 chr4A 100.000 28 0 0 708 735 685310682 685310655 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G195900 chr7D 152119474 152122532 3058 False 1923.466667 5650 96.491333 1 3059 3 chr7D.!!$F2 3058
1 TraesCS7D01G195900 chr7D 151939529 151940671 1142 True 887.000000 887 81.277000 967 2104 1 chr7D.!!$R1 1137
2 TraesCS7D01G195900 chr7D 152097843 152099022 1179 True 507.500000 516 84.736500 967 2099 2 chr7D.!!$R4 1132
3 TraesCS7D01G195900 chr7D 151855474 151856654 1180 True 490.000000 520 83.795000 967 2104 2 chr7D.!!$R3 1137
4 TraesCS7D01G195900 chr7D 184501838 184502535 697 False 259.666667 361 90.002667 2393 3054 3 chr7D.!!$F3 661
5 TraesCS7D01G195900 chr7A 152540119 152541545 1426 False 2119.000000 2119 93.457000 722 2159 1 chr7A.!!$F1 1437
6 TraesCS7D01G195900 chr7B 114178265 114179781 1516 False 2106.000000 2106 92.018000 722 2222 1 chr7B.!!$F1 1500
7 TraesCS7D01G195900 chr7B 113770486 113772864 2378 False 560.000000 935 82.535500 967 2104 2 chr7B.!!$F3 1137
8 TraesCS7D01G195900 chr2D 430008649 430009291 642 False 543.700000 1005 98.497500 2396 3059 2 chr2D.!!$F2 663
9 TraesCS7D01G195900 chr2D 643671736 643672450 714 True 285.000000 442 91.656333 2395 3054 3 chr2D.!!$R1 659
10 TraesCS7D01G195900 chr5B 641837430 641837975 545 True 612.000000 612 86.909000 3 551 1 chr5B.!!$R1 548
11 TraesCS7D01G195900 chr1D 448600236 448600745 509 True 603.000000 603 88.008000 1 515 1 chr1D.!!$R2 514
12 TraesCS7D01G195900 chr1D 261255235 261255793 558 True 555.000000 555 84.821000 1 552 1 chr1D.!!$R1 551
13 TraesCS7D01G195900 chr1D 307353159 307353860 701 True 263.000000 398 89.134000 2394 3054 3 chr1D.!!$R3 660
14 TraesCS7D01G195900 chr2A 473414268 473414785 517 False 525.000000 525 85.221000 1 512 1 chr2A.!!$F1 511
15 TraesCS7D01G195900 chr1A 22890111 22890636 525 True 542.000000 542 85.551000 1 517 1 chr1A.!!$R1 516
16 TraesCS7D01G195900 chr6B 142805053 142805605 552 True 496.000000 496 83.094000 6 552 1 chr6B.!!$R1 546
17 TraesCS7D01G195900 chr6A 73656907 73657466 559 False 492.000000 492 82.709000 1 554 1 chr6A.!!$F1 553
18 TraesCS7D01G195900 chr5D 480040307 480040895 588 False 352.500000 411 88.669000 2394 2991 2 chr5D.!!$F1 597
19 TraesCS7D01G195900 chr3D 567241870 567242441 571 True 334.000000 383 87.534000 2433 3012 2 chr3D.!!$R1 579
20 TraesCS7D01G195900 chr3A 649043433 649044155 722 True 243.300000 363 87.185000 2394 3054 3 chr3A.!!$R2 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 633 0.027979 TGCGTACGTAGGTGTATCGC 59.972 55.0 17.90 15.50 41.16 4.58 F
612 650 0.094730 CGCGCGCTATATTTTAGGGC 59.905 55.0 30.48 11.49 46.08 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 1680 0.468585 ATGTAGGCACATGCATGGGG 60.469 55.0 29.48 21.28 43.89 4.96 R
2287 2505 0.764890 AGTGCTAGCCAAACAGGTCA 59.235 50.0 13.29 0.00 40.61 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.467084 TCGGCCTCGGCACATTCC 62.467 66.667 10.51 0.00 44.11 3.01
122 123 3.369576 GGCCTCGTAAGGAGATGAACTTT 60.370 47.826 0.00 0.00 46.67 2.66
131 132 4.175962 AGGAGATGAACTTTCCCAAGGTA 58.824 43.478 0.00 0.00 33.82 3.08
287 288 1.613437 CAACGCTTCCCAAAGGATGTT 59.387 47.619 0.00 0.00 43.54 2.71
357 358 2.567497 CGTGGGGACAGGTGTACGT 61.567 63.158 0.00 0.00 44.46 3.57
406 407 0.809385 CTTGGAGAAGCGTCGACCTA 59.191 55.000 10.58 10.14 0.00 3.08
407 408 1.201647 CTTGGAGAAGCGTCGACCTAA 59.798 52.381 10.58 0.00 0.00 2.69
408 409 1.250328 TGGAGAAGCGTCGACCTAAA 58.750 50.000 10.58 0.00 0.00 1.85
498 526 0.959372 GGAAGAGGAGGACGACGACA 60.959 60.000 0.00 0.00 0.00 4.35
500 528 0.597072 AAGAGGAGGACGACGACAAC 59.403 55.000 0.00 0.00 0.00 3.32
571 609 9.684448 ATGTATCGTCTATGTTGAACTATCTTG 57.316 33.333 0.00 0.00 0.00 3.02
572 610 8.683615 TGTATCGTCTATGTTGAACTATCTTGT 58.316 33.333 0.00 0.00 0.00 3.16
573 611 9.517609 GTATCGTCTATGTTGAACTATCTTGTT 57.482 33.333 0.00 0.00 0.00 2.83
575 613 8.827177 TCGTCTATGTTGAACTATCTTGTTTT 57.173 30.769 0.00 0.00 0.00 2.43
576 614 9.268268 TCGTCTATGTTGAACTATCTTGTTTTT 57.732 29.630 0.00 0.00 0.00 1.94
577 615 9.318041 CGTCTATGTTGAACTATCTTGTTTTTG 57.682 33.333 0.00 0.00 0.00 2.44
578 616 9.118236 GTCTATGTTGAACTATCTTGTTTTTGC 57.882 33.333 0.00 0.00 0.00 3.68
579 617 6.991485 ATGTTGAACTATCTTGTTTTTGCG 57.009 33.333 0.00 0.00 0.00 4.85
580 618 5.885881 TGTTGAACTATCTTGTTTTTGCGT 58.114 33.333 0.00 0.00 0.00 5.24
581 619 7.017498 TGTTGAACTATCTTGTTTTTGCGTA 57.983 32.000 0.00 0.00 0.00 4.42
582 620 6.908284 TGTTGAACTATCTTGTTTTTGCGTAC 59.092 34.615 0.00 0.00 0.00 3.67
583 621 5.672051 TGAACTATCTTGTTTTTGCGTACG 58.328 37.500 11.84 11.84 0.00 3.67
584 622 5.234757 TGAACTATCTTGTTTTTGCGTACGT 59.765 36.000 17.90 0.00 0.00 3.57
585 623 6.420306 TGAACTATCTTGTTTTTGCGTACGTA 59.580 34.615 17.90 10.06 0.00 3.57
586 624 6.385537 ACTATCTTGTTTTTGCGTACGTAG 57.614 37.500 17.90 8.19 0.00 3.51
587 625 4.657075 ATCTTGTTTTTGCGTACGTAGG 57.343 40.909 17.90 10.86 0.00 3.18
588 626 3.456280 TCTTGTTTTTGCGTACGTAGGT 58.544 40.909 17.90 0.00 0.00 3.08
589 627 3.245754 TCTTGTTTTTGCGTACGTAGGTG 59.754 43.478 17.90 1.43 0.00 4.00
590 628 2.548875 TGTTTTTGCGTACGTAGGTGT 58.451 42.857 17.90 0.00 0.00 4.16
591 629 3.711086 TGTTTTTGCGTACGTAGGTGTA 58.289 40.909 17.90 0.00 0.00 2.90
592 630 4.305769 TGTTTTTGCGTACGTAGGTGTAT 58.694 39.130 17.90 0.00 0.00 2.29
593 631 4.385447 TGTTTTTGCGTACGTAGGTGTATC 59.615 41.667 17.90 0.00 0.00 2.24
594 632 2.456942 TTGCGTACGTAGGTGTATCG 57.543 50.000 17.90 6.18 0.00 2.92
595 633 0.027979 TGCGTACGTAGGTGTATCGC 59.972 55.000 17.90 15.50 41.16 4.58
596 634 0.988825 GCGTACGTAGGTGTATCGCG 60.989 60.000 17.90 0.00 36.20 5.87
597 635 0.988825 CGTACGTAGGTGTATCGCGC 60.989 60.000 7.22 0.00 0.00 6.86
598 636 0.988825 GTACGTAGGTGTATCGCGCG 60.989 60.000 26.76 26.76 0.00 6.86
599 637 2.700334 TACGTAGGTGTATCGCGCGC 62.700 60.000 27.95 23.91 0.00 6.86
600 638 2.025727 GTAGGTGTATCGCGCGCT 59.974 61.111 30.48 19.99 0.00 5.92
601 639 1.280746 GTAGGTGTATCGCGCGCTA 59.719 57.895 30.48 20.37 0.00 4.26
602 640 0.109873 GTAGGTGTATCGCGCGCTAT 60.110 55.000 30.48 26.11 0.00 2.97
603 641 1.129251 GTAGGTGTATCGCGCGCTATA 59.871 52.381 30.48 24.92 0.00 1.31
604 642 0.809385 AGGTGTATCGCGCGCTATAT 59.191 50.000 30.48 20.86 0.00 0.86
605 643 1.201647 AGGTGTATCGCGCGCTATATT 59.798 47.619 30.48 11.90 0.00 1.28
606 644 1.990563 GGTGTATCGCGCGCTATATTT 59.009 47.619 30.48 5.51 0.00 1.40
607 645 2.410730 GGTGTATCGCGCGCTATATTTT 59.589 45.455 30.48 5.09 0.00 1.82
608 646 3.609373 GGTGTATCGCGCGCTATATTTTA 59.391 43.478 30.48 12.57 0.00 1.52
609 647 4.259292 GGTGTATCGCGCGCTATATTTTAG 60.259 45.833 30.48 10.19 0.00 1.85
610 648 3.855379 TGTATCGCGCGCTATATTTTAGG 59.145 43.478 30.48 9.37 0.00 2.69
611 649 1.705256 TCGCGCGCTATATTTTAGGG 58.295 50.000 30.48 8.79 0.00 3.53
612 650 0.094730 CGCGCGCTATATTTTAGGGC 59.905 55.000 30.48 11.49 46.08 5.19
613 651 1.439679 GCGCGCTATATTTTAGGGCT 58.560 50.000 26.67 0.00 46.95 5.19
614 652 1.804748 GCGCGCTATATTTTAGGGCTT 59.195 47.619 26.67 0.00 46.95 4.35
615 653 2.159693 GCGCGCTATATTTTAGGGCTTC 60.160 50.000 26.67 8.26 46.95 3.86
616 654 3.326747 CGCGCTATATTTTAGGGCTTCT 58.673 45.455 16.89 0.00 46.95 2.85
617 655 3.123621 CGCGCTATATTTTAGGGCTTCTG 59.876 47.826 16.89 2.96 46.95 3.02
618 656 3.120165 GCGCTATATTTTAGGGCTTCTGC 60.120 47.826 13.47 0.00 46.06 4.26
619 657 4.319177 CGCTATATTTTAGGGCTTCTGCT 58.681 43.478 0.00 0.00 39.59 4.24
620 658 4.153117 CGCTATATTTTAGGGCTTCTGCTG 59.847 45.833 0.00 0.00 39.59 4.41
621 659 4.457257 GCTATATTTTAGGGCTTCTGCTGG 59.543 45.833 0.00 0.00 39.59 4.85
622 660 4.796110 ATATTTTAGGGCTTCTGCTGGA 57.204 40.909 0.00 0.00 39.59 3.86
623 661 2.496899 TTTTAGGGCTTCTGCTGGAG 57.503 50.000 0.00 0.00 39.59 3.86
624 662 1.362224 TTTAGGGCTTCTGCTGGAGT 58.638 50.000 0.34 0.00 39.59 3.85
625 663 0.615331 TTAGGGCTTCTGCTGGAGTG 59.385 55.000 0.34 0.00 39.59 3.51
626 664 1.267574 TAGGGCTTCTGCTGGAGTGG 61.268 60.000 0.34 0.00 39.59 4.00
627 665 2.749441 GGCTTCTGCTGGAGTGGC 60.749 66.667 0.34 2.19 39.59 5.01
628 666 3.123620 GCTTCTGCTGGAGTGGCG 61.124 66.667 0.34 0.00 36.03 5.69
629 667 3.123620 CTTCTGCTGGAGTGGCGC 61.124 66.667 0.00 0.00 0.00 6.53
630 668 3.889134 CTTCTGCTGGAGTGGCGCA 62.889 63.158 10.83 0.00 0.00 6.09
631 669 4.687215 TCTGCTGGAGTGGCGCAC 62.687 66.667 10.83 5.73 34.10 5.34
658 696 2.846039 TTTTTGTAGTGGCGCGAAAA 57.154 40.000 12.10 2.41 0.00 2.29
659 697 2.392933 TTTTGTAGTGGCGCGAAAAG 57.607 45.000 12.10 0.00 0.00 2.27
660 698 1.301423 TTTGTAGTGGCGCGAAAAGT 58.699 45.000 12.10 0.00 0.00 2.66
661 699 1.301423 TTGTAGTGGCGCGAAAAGTT 58.699 45.000 12.10 0.00 0.00 2.66
662 700 0.584396 TGTAGTGGCGCGAAAAGTTG 59.416 50.000 12.10 0.00 0.00 3.16
663 701 0.724785 GTAGTGGCGCGAAAAGTTGC 60.725 55.000 12.10 0.00 0.00 4.17
664 702 0.882927 TAGTGGCGCGAAAAGTTGCT 60.883 50.000 12.10 0.00 0.00 3.91
665 703 0.882927 AGTGGCGCGAAAAGTTGCTA 60.883 50.000 12.10 0.00 0.00 3.49
666 704 0.168128 GTGGCGCGAAAAGTTGCTAT 59.832 50.000 12.10 0.00 0.00 2.97
667 705 0.878416 TGGCGCGAAAAGTTGCTATT 59.122 45.000 12.10 0.00 0.00 1.73
668 706 1.268352 TGGCGCGAAAAGTTGCTATTT 59.732 42.857 12.10 0.00 0.00 1.40
669 707 2.287909 TGGCGCGAAAAGTTGCTATTTT 60.288 40.909 12.10 0.00 32.68 1.82
670 708 2.341464 GGCGCGAAAAGTTGCTATTTTC 59.659 45.455 12.10 9.94 41.25 2.29
675 713 4.784147 GAAAAGTTGCTATTTTCGTCGC 57.216 40.909 6.05 0.00 37.03 5.19
676 714 4.464112 GAAAAGTTGCTATTTTCGTCGCT 58.536 39.130 6.05 0.00 37.03 4.93
677 715 3.455619 AAGTTGCTATTTTCGTCGCTG 57.544 42.857 0.00 0.00 0.00 5.18
678 716 2.413837 AGTTGCTATTTTCGTCGCTGT 58.586 42.857 0.00 0.00 0.00 4.40
679 717 3.581755 AGTTGCTATTTTCGTCGCTGTA 58.418 40.909 0.00 0.00 0.00 2.74
680 718 3.991773 AGTTGCTATTTTCGTCGCTGTAA 59.008 39.130 0.00 0.00 0.00 2.41
681 719 4.449743 AGTTGCTATTTTCGTCGCTGTAAA 59.550 37.500 0.00 0.00 0.00 2.01
682 720 4.316375 TGCTATTTTCGTCGCTGTAAAC 57.684 40.909 0.00 0.00 0.00 2.01
683 721 3.991773 TGCTATTTTCGTCGCTGTAAACT 59.008 39.130 0.00 0.00 0.00 2.66
684 722 4.449743 TGCTATTTTCGTCGCTGTAAACTT 59.550 37.500 0.00 0.00 0.00 2.66
685 723 5.634439 TGCTATTTTCGTCGCTGTAAACTTA 59.366 36.000 0.00 0.00 0.00 2.24
686 724 6.311935 TGCTATTTTCGTCGCTGTAAACTTAT 59.688 34.615 0.00 0.00 0.00 1.73
687 725 7.148540 TGCTATTTTCGTCGCTGTAAACTTATT 60.149 33.333 0.00 0.00 0.00 1.40
688 726 7.691050 GCTATTTTCGTCGCTGTAAACTTATTT 59.309 33.333 0.00 0.00 0.00 1.40
691 729 5.691508 TCGTCGCTGTAAACTTATTTAGC 57.308 39.130 0.00 0.00 30.79 3.09
692 730 4.263677 TCGTCGCTGTAAACTTATTTAGCG 59.736 41.667 9.84 9.84 42.16 4.26
693 731 4.261451 GTCGCTGTAAACTTATTTAGCGC 58.739 43.478 11.11 0.00 41.31 5.92
694 732 3.000476 TCGCTGTAAACTTATTTAGCGCG 60.000 43.478 0.00 0.00 43.98 6.86
695 733 3.027029 GCTGTAAACTTATTTAGCGCGC 58.973 45.455 26.66 26.66 30.79 6.86
696 734 3.242316 GCTGTAAACTTATTTAGCGCGCT 60.242 43.478 38.01 38.01 30.79 5.92
697 735 4.026310 GCTGTAAACTTATTTAGCGCGCTA 60.026 41.667 35.48 35.48 30.79 4.26
698 736 5.379757 TGTAAACTTATTTAGCGCGCTAC 57.620 39.130 38.48 25.58 30.79 3.58
700 738 2.199291 ACTTATTTAGCGCGCTACGT 57.801 45.000 38.48 29.61 46.11 3.57
701 739 1.850441 ACTTATTTAGCGCGCTACGTG 59.150 47.619 38.48 26.24 46.11 4.49
702 740 1.189446 CTTATTTAGCGCGCTACGTGG 59.811 52.381 38.48 22.74 46.11 4.94
704 742 0.738412 ATTTAGCGCGCTACGTGGTT 60.738 50.000 38.48 15.59 45.57 3.67
705 743 0.109365 TTTAGCGCGCTACGTGGTTA 60.109 50.000 38.48 20.68 45.57 2.85
706 744 0.798009 TTAGCGCGCTACGTGGTTAC 60.798 55.000 38.48 1.55 45.57 2.50
715 753 3.039588 CGTGGTTACGCGCCTGTT 61.040 61.111 5.73 0.00 44.11 3.16
716 754 2.554272 GTGGTTACGCGCCTGTTG 59.446 61.111 5.73 0.00 0.00 3.33
717 755 2.666862 TGGTTACGCGCCTGTTGG 60.667 61.111 5.73 0.00 0.00 3.77
718 756 2.357760 GGTTACGCGCCTGTTGGA 60.358 61.111 5.73 0.00 34.57 3.53
719 757 2.388232 GGTTACGCGCCTGTTGGAG 61.388 63.158 5.73 0.00 36.16 3.86
720 758 1.373748 GTTACGCGCCTGTTGGAGA 60.374 57.895 5.73 0.00 34.95 3.71
721 759 0.739813 GTTACGCGCCTGTTGGAGAT 60.740 55.000 5.73 0.00 34.95 2.75
722 760 0.739462 TTACGCGCCTGTTGGAGATG 60.739 55.000 5.73 0.00 34.95 2.90
723 761 3.869272 CGCGCCTGTTGGAGATGC 61.869 66.667 0.00 0.00 34.95 3.91
724 762 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
725 763 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
791 830 2.798145 GCAAAGACCCAAACTGGAAACG 60.798 50.000 0.00 0.00 40.96 3.60
866 932 1.005512 ATGCGTAAGTGCGTGGTCA 60.006 52.632 0.00 0.00 41.68 4.02
1298 1379 3.673323 CGCTGATATATCCGTGCTTGCTA 60.673 47.826 10.25 0.00 0.00 3.49
1299 1380 3.862267 GCTGATATATCCGTGCTTGCTAG 59.138 47.826 10.25 0.00 0.00 3.42
1426 1519 1.303317 GTTCCTGGGCAACGTGGAT 60.303 57.895 0.00 0.00 38.22 3.41
1510 1603 1.599797 CAACCTGTGGTTCGACCCC 60.600 63.158 0.00 0.00 43.05 4.95
1534 1629 1.603678 GCCGACTTCCACGAGTACAAA 60.604 52.381 0.00 0.00 0.00 2.83
1575 1670 1.380246 TCGTGTACGTATGCCCCCT 60.380 57.895 0.00 0.00 40.80 4.79
1576 1671 0.106769 TCGTGTACGTATGCCCCCTA 60.107 55.000 0.00 0.00 40.80 3.53
1577 1672 0.746063 CGTGTACGTATGCCCCCTAA 59.254 55.000 0.00 0.00 34.11 2.69
1578 1673 1.136695 CGTGTACGTATGCCCCCTAAA 59.863 52.381 0.00 0.00 34.11 1.85
1579 1674 2.418471 CGTGTACGTATGCCCCCTAAAA 60.418 50.000 0.00 0.00 34.11 1.52
1580 1675 3.742013 CGTGTACGTATGCCCCCTAAAAT 60.742 47.826 0.00 0.00 34.11 1.82
1581 1676 3.811497 GTGTACGTATGCCCCCTAAAATC 59.189 47.826 0.00 0.00 0.00 2.17
1582 1677 3.712733 TGTACGTATGCCCCCTAAAATCT 59.287 43.478 0.00 0.00 0.00 2.40
1583 1678 4.900652 TGTACGTATGCCCCCTAAAATCTA 59.099 41.667 0.00 0.00 0.00 1.98
1584 1679 4.618920 ACGTATGCCCCCTAAAATCTAG 57.381 45.455 0.00 0.00 0.00 2.43
1585 1680 3.244457 ACGTATGCCCCCTAAAATCTAGC 60.244 47.826 0.00 0.00 0.00 3.42
1586 1681 2.980246 ATGCCCCCTAAAATCTAGCC 57.020 50.000 0.00 0.00 0.00 3.93
1587 1682 0.850784 TGCCCCCTAAAATCTAGCCC 59.149 55.000 0.00 0.00 0.00 5.19
1588 1683 0.112606 GCCCCCTAAAATCTAGCCCC 59.887 60.000 0.00 0.00 0.00 5.80
1589 1684 1.529744 CCCCCTAAAATCTAGCCCCA 58.470 55.000 0.00 0.00 0.00 4.96
1590 1685 2.073776 CCCCCTAAAATCTAGCCCCAT 58.926 52.381 0.00 0.00 0.00 4.00
1591 1686 2.225117 CCCCCTAAAATCTAGCCCCATG 60.225 54.545 0.00 0.00 0.00 3.66
1592 1687 2.519013 CCCTAAAATCTAGCCCCATGC 58.481 52.381 0.00 0.00 41.71 4.06
1593 1688 2.158475 CCCTAAAATCTAGCCCCATGCA 60.158 50.000 0.00 0.00 44.83 3.96
1594 1689 3.501019 CCCTAAAATCTAGCCCCATGCAT 60.501 47.826 0.00 0.00 44.83 3.96
1595 1690 3.508793 CCTAAAATCTAGCCCCATGCATG 59.491 47.826 20.19 20.19 44.83 4.06
1596 1691 2.761786 AAATCTAGCCCCATGCATGT 57.238 45.000 24.58 9.25 44.83 3.21
1597 1692 1.991121 AATCTAGCCCCATGCATGTG 58.009 50.000 24.58 14.18 44.83 3.21
1598 1693 0.538977 ATCTAGCCCCATGCATGTGC 60.539 55.000 24.58 24.07 44.83 4.57
1599 1694 2.123769 TAGCCCCATGCATGTGCC 60.124 61.111 26.03 14.53 44.83 5.01
1600 1695 2.635787 CTAGCCCCATGCATGTGCCT 62.636 60.000 26.03 19.45 44.83 4.75
1601 1696 1.351850 TAGCCCCATGCATGTGCCTA 61.352 55.000 26.03 18.64 44.83 3.93
1602 1697 2.492773 GCCCCATGCATGTGCCTAC 61.493 63.158 24.58 4.97 41.18 3.18
1618 1713 7.333528 TGTGCCTACATTCCAAGAAAATATC 57.666 36.000 0.00 0.00 0.00 1.63
1619 1714 6.889177 TGTGCCTACATTCCAAGAAAATATCA 59.111 34.615 0.00 0.00 0.00 2.15
1621 1716 8.250332 GTGCCTACATTCCAAGAAAATATCAAA 58.750 33.333 0.00 0.00 0.00 2.69
1736 1926 4.009015 GGAGTACGAGTTCCCGGT 57.991 61.111 0.00 0.00 0.00 5.28
2010 2200 1.805945 CTACTGCGCCGACAAGGAC 60.806 63.158 4.18 0.00 45.00 3.85
2069 2262 3.224269 ACACTACTTAGCCTAGCTAGCC 58.776 50.000 15.74 4.07 42.34 3.93
2072 2265 1.044611 ACTTAGCCTAGCTAGCCTGC 58.955 55.000 14.37 12.70 42.34 4.85
2105 2301 7.014711 TCAGATCGATTTCTAGTTAAGATGGCT 59.985 37.037 0.00 0.00 33.05 4.75
2106 2302 8.300286 CAGATCGATTTCTAGTTAAGATGGCTA 58.700 37.037 0.00 0.00 33.05 3.93
2148 2366 4.342378 GTCCTCAGCCAATATGTAGTCTCA 59.658 45.833 0.00 0.00 0.00 3.27
2224 2442 8.547967 TTATCCGACTGATTTATGATTTAGGC 57.452 34.615 0.00 0.00 34.76 3.93
2225 2443 5.924356 TCCGACTGATTTATGATTTAGGCA 58.076 37.500 0.00 0.00 0.00 4.75
2226 2444 6.533730 TCCGACTGATTTATGATTTAGGCAT 58.466 36.000 0.00 0.00 0.00 4.40
2227 2445 6.427853 TCCGACTGATTTATGATTTAGGCATG 59.572 38.462 0.00 0.00 0.00 4.06
2228 2446 6.427853 CCGACTGATTTATGATTTAGGCATGA 59.572 38.462 0.00 0.00 0.00 3.07
2229 2447 7.120285 CCGACTGATTTATGATTTAGGCATGAT 59.880 37.037 0.00 0.00 0.00 2.45
2230 2448 8.509690 CGACTGATTTATGATTTAGGCATGATT 58.490 33.333 0.00 0.00 0.00 2.57
2238 2456 6.618287 TGATTTAGGCATGATTAAACGAGG 57.382 37.500 0.00 0.00 0.00 4.63
2239 2457 6.119536 TGATTTAGGCATGATTAAACGAGGT 58.880 36.000 0.00 0.00 0.00 3.85
2240 2458 6.260050 TGATTTAGGCATGATTAAACGAGGTC 59.740 38.462 0.00 0.00 0.00 3.85
2241 2459 2.919228 AGGCATGATTAAACGAGGTCC 58.081 47.619 0.00 0.00 0.00 4.46
2242 2460 2.505819 AGGCATGATTAAACGAGGTCCT 59.494 45.455 0.00 0.00 0.00 3.85
2243 2461 2.872858 GGCATGATTAAACGAGGTCCTC 59.127 50.000 9.05 9.05 0.00 3.71
2244 2462 3.531538 GCATGATTAAACGAGGTCCTCA 58.468 45.455 19.15 0.00 0.00 3.86
2245 2463 3.557595 GCATGATTAAACGAGGTCCTCAG 59.442 47.826 19.15 13.31 0.00 3.35
2248 2466 1.344065 TTAAACGAGGTCCTCAGCCA 58.656 50.000 19.15 0.00 0.00 4.75
2249 2467 1.344065 TAAACGAGGTCCTCAGCCAA 58.656 50.000 19.15 0.00 0.00 4.52
2251 2469 1.568504 AACGAGGTCCTCAGCCAATA 58.431 50.000 19.15 0.00 0.00 1.90
2252 2470 1.794714 ACGAGGTCCTCAGCCAATAT 58.205 50.000 19.15 0.00 0.00 1.28
2253 2471 1.414181 ACGAGGTCCTCAGCCAATATG 59.586 52.381 19.15 1.66 0.00 1.78
2254 2472 1.875576 CGAGGTCCTCAGCCAATATGC 60.876 57.143 19.15 0.00 0.00 3.14
2255 2473 1.141657 GAGGTCCTCAGCCAATATGCA 59.858 52.381 14.46 0.00 0.00 3.96
2256 2474 1.142465 AGGTCCTCAGCCAATATGCAG 59.858 52.381 0.00 0.00 0.00 4.41
2257 2475 1.133976 GGTCCTCAGCCAATATGCAGT 60.134 52.381 0.00 0.00 0.00 4.40
2258 2476 2.648059 GTCCTCAGCCAATATGCAGTT 58.352 47.619 0.00 0.00 0.00 3.16
2259 2477 3.019564 GTCCTCAGCCAATATGCAGTTT 58.980 45.455 0.00 0.00 0.00 2.66
2260 2478 3.445096 GTCCTCAGCCAATATGCAGTTTT 59.555 43.478 0.00 0.00 0.00 2.43
2290 2508 8.789762 ACTTACCATGGTTTTATTTACAGTGAC 58.210 33.333 25.38 0.00 0.00 3.67
2291 2509 6.584185 ACCATGGTTTTATTTACAGTGACC 57.416 37.500 13.00 0.00 0.00 4.02
2293 2511 6.208599 ACCATGGTTTTATTTACAGTGACCTG 59.791 38.462 13.00 0.00 44.68 4.00
2303 2521 1.160137 CAGTGACCTGTTTGGCTAGC 58.840 55.000 6.04 6.04 40.22 3.42
2304 2522 0.764890 AGTGACCTGTTTGGCTAGCA 59.235 50.000 18.24 0.00 40.22 3.49
2305 2523 0.875059 GTGACCTGTTTGGCTAGCAC 59.125 55.000 18.24 6.91 40.22 4.40
2307 2525 1.974957 TGACCTGTTTGGCTAGCACTA 59.025 47.619 18.24 0.00 40.22 2.74
2309 2527 3.181449 TGACCTGTTTGGCTAGCACTAAA 60.181 43.478 18.24 11.54 40.22 1.85
2310 2528 3.818773 GACCTGTTTGGCTAGCACTAAAA 59.181 43.478 18.24 8.39 40.22 1.52
2312 2530 4.037565 ACCTGTTTGGCTAGCACTAAAAAC 59.962 41.667 18.24 16.83 40.22 2.43
2313 2531 4.278419 CCTGTTTGGCTAGCACTAAAAACT 59.722 41.667 18.24 0.00 0.00 2.66
2316 2534 6.292923 TGTTTGGCTAGCACTAAAAACTCTA 58.707 36.000 18.24 1.41 0.00 2.43
2317 2535 6.940298 TGTTTGGCTAGCACTAAAAACTCTAT 59.060 34.615 18.24 0.00 0.00 1.98
2319 2537 8.943002 GTTTGGCTAGCACTAAAAACTCTATTA 58.057 33.333 18.24 0.00 0.00 0.98
2320 2538 9.681062 TTTGGCTAGCACTAAAAACTCTATTAT 57.319 29.630 18.24 0.00 0.00 1.28
2354 2572 9.646522 AGAGTATTTCCAATACTATGGCAAATT 57.353 29.630 8.77 0.00 40.46 1.82
2355 2573 9.899226 GAGTATTTCCAATACTATGGCAAATTC 57.101 33.333 8.77 0.00 40.46 2.17
2356 2574 9.646522 AGTATTTCCAATACTATGGCAAATTCT 57.353 29.630 7.28 0.00 40.46 2.40
2357 2575 9.899226 GTATTTCCAATACTATGGCAAATTCTC 57.101 33.333 0.00 0.00 40.46 2.87
2359 2577 7.572523 TTCCAATACTATGGCAAATTCTCTG 57.427 36.000 0.00 0.00 40.46 3.35
2360 2578 6.662755 TCCAATACTATGGCAAATTCTCTGT 58.337 36.000 0.00 0.00 40.46 3.41
2361 2579 6.767902 TCCAATACTATGGCAAATTCTCTGTC 59.232 38.462 0.00 0.00 40.46 3.51
2362 2580 6.769822 CCAATACTATGGCAAATTCTCTGTCT 59.230 38.462 0.00 0.00 32.78 3.41
2363 2581 7.933577 CCAATACTATGGCAAATTCTCTGTCTA 59.066 37.037 0.00 0.00 32.78 2.59
2364 2582 9.330063 CAATACTATGGCAAATTCTCTGTCTAA 57.670 33.333 0.00 0.00 0.00 2.10
2365 2583 9.905713 AATACTATGGCAAATTCTCTGTCTAAA 57.094 29.630 0.00 0.00 0.00 1.85
2366 2584 9.905713 ATACTATGGCAAATTCTCTGTCTAAAA 57.094 29.630 0.00 0.00 0.00 1.52
2492 2822 6.071784 TGCACAAATCTTAGAGCATGTGAAAT 60.072 34.615 21.04 0.00 40.32 2.17
2606 3118 1.203523 CTCACCCACTCTTCCTCTTCG 59.796 57.143 0.00 0.00 0.00 3.79
2770 3329 4.180496 CGGTAGCCGTTTCCACTC 57.820 61.111 0.00 0.00 42.73 3.51
2771 3330 1.447314 CGGTAGCCGTTTCCACTCC 60.447 63.158 0.00 0.00 42.73 3.85
2772 3331 1.885163 CGGTAGCCGTTTCCACTCCT 61.885 60.000 0.00 0.00 42.73 3.69
2773 3332 0.108281 GGTAGCCGTTTCCACTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
2774 3333 0.458025 GTAGCCGTTTCCACTCCTCG 60.458 60.000 0.00 0.00 0.00 4.63
2775 3334 0.609957 TAGCCGTTTCCACTCCTCGA 60.610 55.000 0.00 0.00 0.00 4.04
2776 3335 1.446272 GCCGTTTCCACTCCTCGAG 60.446 63.158 5.13 5.13 35.52 4.04
2777 3336 1.446272 CCGTTTCCACTCCTCGAGC 60.446 63.158 6.99 0.00 32.04 5.03
2778 3337 1.446272 CGTTTCCACTCCTCGAGCC 60.446 63.158 6.99 0.00 32.04 4.70
2779 3338 1.446272 GTTTCCACTCCTCGAGCCG 60.446 63.158 6.99 2.01 32.04 5.52
2780 3339 3.296709 TTTCCACTCCTCGAGCCGC 62.297 63.158 6.99 0.00 32.04 6.53
2783 3342 4.803426 CACTCCTCGAGCCGCCAC 62.803 72.222 6.99 0.00 32.04 5.01
2813 3405 2.580155 ATCTCCCCTGCTCGAGCTCA 62.580 60.000 35.27 17.61 42.66 4.26
2955 3549 0.617249 CTCCCCTCCTCAAGCTCACT 60.617 60.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 2.989571 ACCTTGGGAAAGTTCATCTCCT 59.010 45.455 0.00 0.00 0.00 3.69
122 123 4.124351 CGCGTCGCTACCTTGGGA 62.124 66.667 16.36 0.00 0.00 4.37
234 235 0.692419 ATGGCCTCCTCGTCCATCTT 60.692 55.000 3.32 0.00 35.85 2.40
278 279 2.484264 GCGCTAGTTGACAACATCCTTT 59.516 45.455 20.08 1.13 0.00 3.11
279 280 2.076863 GCGCTAGTTGACAACATCCTT 58.923 47.619 20.08 1.85 0.00 3.36
287 288 2.363788 AGAATTCGCGCTAGTTGACA 57.636 45.000 5.56 0.00 0.00 3.58
311 312 4.394712 CGCTCCGCCCTCCTTTGT 62.395 66.667 0.00 0.00 0.00 2.83
335 336 2.037144 GTACACCTGTCCCCACGATAT 58.963 52.381 0.00 0.00 0.00 1.63
343 344 0.037605 CTTCCACGTACACCTGTCCC 60.038 60.000 0.00 0.00 0.00 4.46
406 407 2.567985 ACCGTTCATCGTTGGAGTTTT 58.432 42.857 0.00 0.00 37.94 2.43
407 408 2.249844 ACCGTTCATCGTTGGAGTTT 57.750 45.000 0.00 0.00 37.94 2.66
408 409 3.604875 ATACCGTTCATCGTTGGAGTT 57.395 42.857 0.00 0.00 37.94 3.01
498 526 7.376615 AGTTTAGCATAGTTCAACTACTCGTT 58.623 34.615 0.00 0.00 32.84 3.85
500 528 9.171701 GATAGTTTAGCATAGTTCAACTACTCG 57.828 37.037 0.00 0.00 32.84 4.18
554 592 7.803189 ACGCAAAAACAAGATAGTTCAACATAG 59.197 33.333 0.00 0.00 0.00 2.23
555 593 7.644490 ACGCAAAAACAAGATAGTTCAACATA 58.356 30.769 0.00 0.00 0.00 2.29
556 594 6.503524 ACGCAAAAACAAGATAGTTCAACAT 58.496 32.000 0.00 0.00 0.00 2.71
557 595 5.885881 ACGCAAAAACAAGATAGTTCAACA 58.114 33.333 0.00 0.00 0.00 3.33
558 596 6.084551 CGTACGCAAAAACAAGATAGTTCAAC 59.915 38.462 0.52 0.00 0.00 3.18
559 597 6.130723 CGTACGCAAAAACAAGATAGTTCAA 58.869 36.000 0.52 0.00 0.00 2.69
560 598 5.234757 ACGTACGCAAAAACAAGATAGTTCA 59.765 36.000 16.72 0.00 0.00 3.18
561 599 5.673029 ACGTACGCAAAAACAAGATAGTTC 58.327 37.500 16.72 0.00 0.00 3.01
562 600 5.662211 ACGTACGCAAAAACAAGATAGTT 57.338 34.783 16.72 0.00 0.00 2.24
563 601 5.346822 CCTACGTACGCAAAAACAAGATAGT 59.653 40.000 16.72 0.00 0.00 2.12
564 602 5.346822 ACCTACGTACGCAAAAACAAGATAG 59.653 40.000 16.72 4.75 0.00 2.08
565 603 5.118971 CACCTACGTACGCAAAAACAAGATA 59.881 40.000 16.72 0.00 0.00 1.98
566 604 4.060205 ACCTACGTACGCAAAAACAAGAT 58.940 39.130 16.72 0.00 0.00 2.40
567 605 3.245754 CACCTACGTACGCAAAAACAAGA 59.754 43.478 16.72 0.00 0.00 3.02
568 606 3.001533 ACACCTACGTACGCAAAAACAAG 59.998 43.478 16.72 0.00 0.00 3.16
569 607 2.935201 ACACCTACGTACGCAAAAACAA 59.065 40.909 16.72 0.00 0.00 2.83
570 608 2.548875 ACACCTACGTACGCAAAAACA 58.451 42.857 16.72 0.00 0.00 2.83
571 609 4.489206 CGATACACCTACGTACGCAAAAAC 60.489 45.833 16.72 0.00 0.00 2.43
572 610 3.607641 CGATACACCTACGTACGCAAAAA 59.392 43.478 16.72 0.00 0.00 1.94
573 611 3.170505 CGATACACCTACGTACGCAAAA 58.829 45.455 16.72 0.00 0.00 2.44
574 612 2.784505 CGATACACCTACGTACGCAAA 58.215 47.619 16.72 0.00 0.00 3.68
575 613 1.531677 GCGATACACCTACGTACGCAA 60.532 52.381 16.72 2.59 39.48 4.85
576 614 0.027979 GCGATACACCTACGTACGCA 59.972 55.000 16.72 0.23 39.48 5.24
577 615 0.988825 CGCGATACACCTACGTACGC 60.989 60.000 16.72 12.73 37.93 4.42
578 616 0.988825 GCGCGATACACCTACGTACG 60.989 60.000 12.10 15.01 0.00 3.67
579 617 0.988825 CGCGCGATACACCTACGTAC 60.989 60.000 28.94 0.00 0.00 3.67
580 618 1.276547 CGCGCGATACACCTACGTA 59.723 57.895 28.94 0.00 0.00 3.57
581 619 2.023741 CGCGCGATACACCTACGT 59.976 61.111 28.94 0.00 0.00 3.57
582 620 2.434225 TAGCGCGCGATACACCTACG 62.434 60.000 37.18 0.41 0.00 3.51
583 621 0.109873 ATAGCGCGCGATACACCTAC 60.110 55.000 37.18 12.54 0.00 3.18
584 622 1.441738 TATAGCGCGCGATACACCTA 58.558 50.000 37.18 23.53 0.00 3.08
585 623 0.809385 ATATAGCGCGCGATACACCT 59.191 50.000 37.18 22.02 0.00 4.00
586 624 1.625616 AATATAGCGCGCGATACACC 58.374 50.000 37.18 15.10 0.00 4.16
587 625 3.700130 AAAATATAGCGCGCGATACAC 57.300 42.857 37.18 15.96 0.00 2.90
588 626 3.855379 CCTAAAATATAGCGCGCGATACA 59.145 43.478 37.18 24.04 0.00 2.29
589 627 3.242248 CCCTAAAATATAGCGCGCGATAC 59.758 47.826 37.18 16.84 0.00 2.24
590 628 3.441163 CCCTAAAATATAGCGCGCGATA 58.559 45.455 37.18 33.95 0.00 2.92
591 629 2.268298 CCCTAAAATATAGCGCGCGAT 58.732 47.619 37.18 32.71 0.00 4.58
592 630 1.705256 CCCTAAAATATAGCGCGCGA 58.295 50.000 37.18 22.91 0.00 5.87
593 631 0.094730 GCCCTAAAATATAGCGCGCG 59.905 55.000 28.44 28.44 0.00 6.86
594 632 1.439679 AGCCCTAAAATATAGCGCGC 58.560 50.000 26.66 26.66 0.00 6.86
595 633 3.123621 CAGAAGCCCTAAAATATAGCGCG 59.876 47.826 0.00 0.00 0.00 6.86
596 634 3.120165 GCAGAAGCCCTAAAATATAGCGC 60.120 47.826 0.00 0.00 33.58 5.92
597 635 4.153117 CAGCAGAAGCCCTAAAATATAGCG 59.847 45.833 0.00 0.00 43.56 4.26
598 636 4.457257 CCAGCAGAAGCCCTAAAATATAGC 59.543 45.833 0.00 0.00 43.56 2.97
599 637 5.869579 TCCAGCAGAAGCCCTAAAATATAG 58.130 41.667 0.00 0.00 43.56 1.31
600 638 5.369699 ACTCCAGCAGAAGCCCTAAAATATA 59.630 40.000 0.00 0.00 43.56 0.86
601 639 4.166919 ACTCCAGCAGAAGCCCTAAAATAT 59.833 41.667 0.00 0.00 43.56 1.28
602 640 3.523564 ACTCCAGCAGAAGCCCTAAAATA 59.476 43.478 0.00 0.00 43.56 1.40
603 641 2.310052 ACTCCAGCAGAAGCCCTAAAAT 59.690 45.455 0.00 0.00 43.56 1.82
604 642 1.705186 ACTCCAGCAGAAGCCCTAAAA 59.295 47.619 0.00 0.00 43.56 1.52
605 643 1.003580 CACTCCAGCAGAAGCCCTAAA 59.996 52.381 0.00 0.00 43.56 1.85
606 644 0.615331 CACTCCAGCAGAAGCCCTAA 59.385 55.000 0.00 0.00 43.56 2.69
607 645 1.267574 CCACTCCAGCAGAAGCCCTA 61.268 60.000 0.00 0.00 43.56 3.53
608 646 2.600729 CCACTCCAGCAGAAGCCCT 61.601 63.158 0.00 0.00 43.56 5.19
609 647 2.045536 CCACTCCAGCAGAAGCCC 60.046 66.667 0.00 0.00 43.56 5.19
610 648 2.749441 GCCACTCCAGCAGAAGCC 60.749 66.667 0.00 0.00 43.56 4.35
611 649 3.123620 CGCCACTCCAGCAGAAGC 61.124 66.667 0.00 0.00 42.56 3.86
612 650 3.123620 GCGCCACTCCAGCAGAAG 61.124 66.667 0.00 0.00 0.00 2.85
613 651 3.939939 TGCGCCACTCCAGCAGAA 61.940 61.111 4.18 0.00 35.81 3.02
614 652 4.687215 GTGCGCCACTCCAGCAGA 62.687 66.667 4.18 0.00 41.93 4.26
639 677 2.097791 ACTTTTCGCGCCACTACAAAAA 59.902 40.909 0.00 0.00 0.00 1.94
640 678 1.671845 ACTTTTCGCGCCACTACAAAA 59.328 42.857 0.00 0.00 0.00 2.44
641 679 1.301423 ACTTTTCGCGCCACTACAAA 58.699 45.000 0.00 0.00 0.00 2.83
642 680 1.003331 CAACTTTTCGCGCCACTACAA 60.003 47.619 0.00 0.00 0.00 2.41
643 681 0.584396 CAACTTTTCGCGCCACTACA 59.416 50.000 0.00 0.00 0.00 2.74
644 682 0.724785 GCAACTTTTCGCGCCACTAC 60.725 55.000 0.00 0.00 0.00 2.73
645 683 0.882927 AGCAACTTTTCGCGCCACTA 60.883 50.000 0.00 0.00 0.00 2.74
646 684 0.882927 TAGCAACTTTTCGCGCCACT 60.883 50.000 0.00 0.00 0.00 4.00
647 685 0.168128 ATAGCAACTTTTCGCGCCAC 59.832 50.000 0.00 0.00 0.00 5.01
648 686 0.878416 AATAGCAACTTTTCGCGCCA 59.122 45.000 0.00 0.00 0.00 5.69
649 687 1.977188 AAATAGCAACTTTTCGCGCC 58.023 45.000 0.00 0.00 0.00 6.53
650 688 3.601659 GAAAATAGCAACTTTTCGCGC 57.398 42.857 0.00 0.00 34.12 6.86
654 692 4.318332 CAGCGACGAAAATAGCAACTTTTC 59.682 41.667 0.00 7.81 38.59 2.29
655 693 4.219033 CAGCGACGAAAATAGCAACTTTT 58.781 39.130 0.00 0.00 0.00 2.27
656 694 3.250040 ACAGCGACGAAAATAGCAACTTT 59.750 39.130 0.00 0.00 0.00 2.66
657 695 2.806244 ACAGCGACGAAAATAGCAACTT 59.194 40.909 0.00 0.00 0.00 2.66
658 696 2.413837 ACAGCGACGAAAATAGCAACT 58.586 42.857 0.00 0.00 0.00 3.16
659 697 2.875080 ACAGCGACGAAAATAGCAAC 57.125 45.000 0.00 0.00 0.00 4.17
660 698 4.449743 AGTTTACAGCGACGAAAATAGCAA 59.550 37.500 0.00 0.00 0.00 3.91
661 699 3.991773 AGTTTACAGCGACGAAAATAGCA 59.008 39.130 0.00 0.00 0.00 3.49
662 700 4.579270 AGTTTACAGCGACGAAAATAGC 57.421 40.909 0.00 0.00 0.00 2.97
665 703 7.691050 GCTAAATAAGTTTACAGCGACGAAAAT 59.309 33.333 0.00 0.00 0.00 1.82
666 704 7.011189 GCTAAATAAGTTTACAGCGACGAAAA 58.989 34.615 0.00 0.00 0.00 2.29
667 705 6.527957 GCTAAATAAGTTTACAGCGACGAAA 58.472 36.000 0.00 0.00 0.00 3.46
668 706 6.086319 GCTAAATAAGTTTACAGCGACGAA 57.914 37.500 0.00 0.00 0.00 3.85
669 707 5.691508 GCTAAATAAGTTTACAGCGACGA 57.308 39.130 0.00 0.00 0.00 4.20
673 711 3.269310 CGCGCTAAATAAGTTTACAGCG 58.731 45.455 5.56 9.24 46.99 5.18
674 712 3.027029 GCGCGCTAAATAAGTTTACAGC 58.973 45.455 26.67 0.00 0.00 4.40
675 713 4.516092 AGCGCGCTAAATAAGTTTACAG 57.484 40.909 35.79 0.00 0.00 2.74
676 714 4.027458 CGTAGCGCGCTAAATAAGTTTACA 60.027 41.667 39.73 15.04 0.00 2.41
677 715 4.027377 ACGTAGCGCGCTAAATAAGTTTAC 60.027 41.667 39.73 25.07 46.11 2.01
678 716 4.027458 CACGTAGCGCGCTAAATAAGTTTA 60.027 41.667 39.73 15.85 46.11 2.01
679 717 2.925563 ACGTAGCGCGCTAAATAAGTTT 59.074 40.909 39.73 14.94 46.11 2.66
680 718 2.280708 CACGTAGCGCGCTAAATAAGTT 59.719 45.455 39.73 15.74 46.11 2.66
681 719 1.850441 CACGTAGCGCGCTAAATAAGT 59.150 47.619 39.73 28.45 46.11 2.24
682 720 1.189446 CCACGTAGCGCGCTAAATAAG 59.811 52.381 39.73 27.87 46.11 1.73
683 721 1.202203 CCACGTAGCGCGCTAAATAA 58.798 50.000 39.73 19.96 46.11 1.40
684 722 0.101040 ACCACGTAGCGCGCTAAATA 59.899 50.000 39.73 20.39 46.11 1.40
685 723 0.738412 AACCACGTAGCGCGCTAAAT 60.738 50.000 39.73 27.83 46.11 1.40
686 724 0.109365 TAACCACGTAGCGCGCTAAA 60.109 50.000 39.73 21.64 46.11 1.85
687 725 0.798009 GTAACCACGTAGCGCGCTAA 60.798 55.000 39.73 21.51 46.11 3.09
688 726 1.226379 GTAACCACGTAGCGCGCTA 60.226 57.895 35.48 35.48 46.11 4.26
689 727 2.505557 GTAACCACGTAGCGCGCT 60.506 61.111 38.01 38.01 46.11 5.92
690 728 3.894097 CGTAACCACGTAGCGCGC 61.894 66.667 26.66 26.66 46.11 6.86
699 737 2.554272 CAACAGGCGCGTAACCAC 59.446 61.111 8.43 0.00 0.00 4.16
700 738 2.666862 CCAACAGGCGCGTAACCA 60.667 61.111 8.43 0.00 0.00 3.67
701 739 2.357760 TCCAACAGGCGCGTAACC 60.358 61.111 8.43 0.00 0.00 2.85
702 740 0.739813 ATCTCCAACAGGCGCGTAAC 60.740 55.000 8.43 0.00 0.00 2.50
703 741 0.739462 CATCTCCAACAGGCGCGTAA 60.739 55.000 8.43 0.00 0.00 3.18
704 742 1.153647 CATCTCCAACAGGCGCGTA 60.154 57.895 8.43 0.00 0.00 4.42
705 743 2.434884 CATCTCCAACAGGCGCGT 60.435 61.111 8.43 0.00 0.00 6.01
706 744 3.869272 GCATCTCCAACAGGCGCG 61.869 66.667 0.00 0.00 0.00 6.86
707 745 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
708 746 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
716 754 6.916648 ACCTCATGGTTCTTAGAGCATCTCC 61.917 48.000 0.00 0.00 44.03 3.71
717 755 4.100808 ACCTCATGGTTCTTAGAGCATCTC 59.899 45.833 0.00 0.00 44.03 2.75
719 757 4.414337 ACCTCATGGTTCTTAGAGCATC 57.586 45.455 0.00 0.00 46.05 3.91
740 778 6.319911 TGATCACAATTCACAAACACTACCAA 59.680 34.615 0.00 0.00 0.00 3.67
1029 1098 1.460273 GGAGGACGATCAGGAGGAGC 61.460 65.000 0.00 0.00 0.00 4.70
1510 1603 4.717629 TCGTGGAAGTCGGCTGCG 62.718 66.667 0.00 0.00 0.00 5.18
1575 1670 3.890756 CACATGCATGGGGCTAGATTTTA 59.109 43.478 29.41 0.00 45.15 1.52
1576 1671 2.696707 CACATGCATGGGGCTAGATTTT 59.303 45.455 29.41 1.84 45.15 1.82
1577 1672 2.313317 CACATGCATGGGGCTAGATTT 58.687 47.619 29.41 2.39 45.15 2.17
1578 1673 1.991121 CACATGCATGGGGCTAGATT 58.009 50.000 29.41 3.16 45.15 2.40
1579 1674 0.538977 GCACATGCATGGGGCTAGAT 60.539 55.000 29.48 3.60 45.15 1.98
1580 1675 1.152902 GCACATGCATGGGGCTAGA 60.153 57.895 29.48 0.00 45.15 2.43
1581 1676 3.440151 GCACATGCATGGGGCTAG 58.560 61.111 29.48 12.85 45.15 3.42
1585 1680 0.468585 ATGTAGGCACATGCATGGGG 60.469 55.000 29.48 21.28 43.89 4.96
1586 1681 1.338973 GAATGTAGGCACATGCATGGG 59.661 52.381 29.41 27.36 44.83 4.00
1587 1682 1.338973 GGAATGTAGGCACATGCATGG 59.661 52.381 29.41 19.00 44.83 3.66
1588 1683 2.025898 TGGAATGTAGGCACATGCATG 58.974 47.619 25.09 25.09 44.83 4.06
1589 1684 2.440517 TGGAATGTAGGCACATGCAT 57.559 45.000 6.15 0.39 44.83 3.96
1590 1685 2.093890 CTTGGAATGTAGGCACATGCA 58.906 47.619 6.15 0.00 44.83 3.96
1591 1686 2.368439 TCTTGGAATGTAGGCACATGC 58.632 47.619 0.00 0.00 44.83 4.06
1592 1687 5.389859 TTTTCTTGGAATGTAGGCACATG 57.610 39.130 0.00 0.00 44.83 3.21
1594 1689 6.889177 TGATATTTTCTTGGAATGTAGGCACA 59.111 34.615 0.00 0.00 39.52 4.57
1595 1690 7.333528 TGATATTTTCTTGGAATGTAGGCAC 57.666 36.000 0.00 0.00 0.00 5.01
1596 1691 7.953005 TTGATATTTTCTTGGAATGTAGGCA 57.047 32.000 0.00 0.00 0.00 4.75
1618 1713 7.603404 TGCAAGTTGGGAAAATCAAGATATTTG 59.397 33.333 4.75 0.00 0.00 2.32
1619 1714 7.678837 TGCAAGTTGGGAAAATCAAGATATTT 58.321 30.769 4.75 0.00 0.00 1.40
1621 1716 6.855763 TGCAAGTTGGGAAAATCAAGATAT 57.144 33.333 4.75 0.00 0.00 1.63
1623 1718 5.750352 ATGCAAGTTGGGAAAATCAAGAT 57.250 34.783 4.75 0.00 0.00 2.40
1624 1719 5.070180 TCAATGCAAGTTGGGAAAATCAAGA 59.930 36.000 4.75 0.00 0.00 3.02
1631 1726 9.598517 GAATATATTTCAATGCAAGTTGGGAAA 57.401 29.630 4.75 0.00 0.00 3.13
1635 1730 6.696583 TGCGAATATATTTCAATGCAAGTTGG 59.303 34.615 4.75 0.00 0.00 3.77
1636 1731 7.096353 CCTGCGAATATATTTCAATGCAAGTTG 60.096 37.037 0.00 0.00 0.00 3.16
1736 1926 2.747460 GCACGCCCATCTGCTTCA 60.747 61.111 0.00 0.00 0.00 3.02
1791 1981 1.146930 GATCTTGATCCTGCCGCCA 59.853 57.895 0.00 0.00 0.00 5.69
1896 2086 1.752833 GTTCCACCAGAGGTCCGTT 59.247 57.895 0.00 0.00 31.02 4.44
2010 2200 2.281208 TTGCCGTTCTGGAACCGG 60.281 61.111 0.00 0.00 42.00 5.28
2069 2262 4.755629 AGAAATCGATCTGATCCAATGCAG 59.244 41.667 11.84 0.00 35.84 4.41
2072 2265 7.959689 AACTAGAAATCGATCTGATCCAATG 57.040 36.000 11.84 0.00 35.84 2.82
2105 2301 7.004555 AGGACCTCGTTTAATCATGCATATA 57.995 36.000 0.00 0.00 0.00 0.86
2106 2302 5.869579 AGGACCTCGTTTAATCATGCATAT 58.130 37.500 0.00 0.00 0.00 1.78
2121 2335 1.414181 ACATATTGGCTGAGGACCTCG 59.586 52.381 16.81 12.17 32.35 4.63
2222 2440 2.872858 GAGGACCTCGTTTAATCATGCC 59.127 50.000 5.55 0.00 0.00 4.40
2223 2441 3.531538 TGAGGACCTCGTTTAATCATGC 58.468 45.455 16.81 0.00 32.35 4.06
2224 2442 3.557595 GCTGAGGACCTCGTTTAATCATG 59.442 47.826 16.81 0.00 32.35 3.07
2225 2443 3.432326 GGCTGAGGACCTCGTTTAATCAT 60.432 47.826 16.81 0.00 32.35 2.45
2226 2444 2.093658 GGCTGAGGACCTCGTTTAATCA 60.094 50.000 16.81 0.00 32.35 2.57
2227 2445 2.093658 TGGCTGAGGACCTCGTTTAATC 60.094 50.000 16.81 3.03 32.35 1.75
2228 2446 1.906574 TGGCTGAGGACCTCGTTTAAT 59.093 47.619 16.81 0.00 32.35 1.40
2229 2447 1.344065 TGGCTGAGGACCTCGTTTAA 58.656 50.000 16.81 0.00 32.35 1.52
2230 2448 1.344065 TTGGCTGAGGACCTCGTTTA 58.656 50.000 16.81 0.85 32.35 2.01
2232 2450 1.568504 TATTGGCTGAGGACCTCGTT 58.431 50.000 16.81 0.68 32.35 3.85
2235 2453 1.141657 TGCATATTGGCTGAGGACCTC 59.858 52.381 15.13 15.13 34.04 3.85
2236 2454 1.142465 CTGCATATTGGCTGAGGACCT 59.858 52.381 0.00 0.00 35.02 3.85
2237 2455 1.133976 ACTGCATATTGGCTGAGGACC 60.134 52.381 0.00 0.00 36.66 4.46
2238 2456 2.338577 ACTGCATATTGGCTGAGGAC 57.661 50.000 0.00 0.00 36.66 3.85
2239 2457 3.370840 AAACTGCATATTGGCTGAGGA 57.629 42.857 0.00 0.00 36.66 3.71
2240 2458 4.460948 AAAAACTGCATATTGGCTGAGG 57.539 40.909 0.00 0.00 36.66 3.86
2264 2482 8.789762 GTCACTGTAAATAAAACCATGGTAAGT 58.210 33.333 20.12 8.98 0.00 2.24
2265 2483 8.241367 GGTCACTGTAAATAAAACCATGGTAAG 58.759 37.037 20.12 7.27 0.00 2.34
2266 2484 7.945664 AGGTCACTGTAAATAAAACCATGGTAA 59.054 33.333 20.12 7.43 0.00 2.85
2267 2485 7.392113 CAGGTCACTGTAAATAAAACCATGGTA 59.608 37.037 20.12 2.28 39.92 3.25
2268 2486 6.208599 CAGGTCACTGTAAATAAAACCATGGT 59.791 38.462 13.00 13.00 39.92 3.55
2269 2487 6.620678 CAGGTCACTGTAAATAAAACCATGG 58.379 40.000 11.19 11.19 39.92 3.66
2286 2504 0.875059 GTGCTAGCCAAACAGGTCAC 59.125 55.000 13.29 0.00 40.61 3.67
2287 2505 0.764890 AGTGCTAGCCAAACAGGTCA 59.235 50.000 13.29 0.00 40.61 4.02
2288 2506 2.762535 TAGTGCTAGCCAAACAGGTC 57.237 50.000 13.29 0.00 40.61 3.85
2290 2508 4.278419 AGTTTTTAGTGCTAGCCAAACAGG 59.722 41.667 13.29 0.00 41.84 4.00
2291 2509 5.239525 AGAGTTTTTAGTGCTAGCCAAACAG 59.760 40.000 13.29 0.00 0.00 3.16
2293 2511 5.690997 AGAGTTTTTAGTGCTAGCCAAAC 57.309 39.130 13.29 12.61 0.00 2.93
2294 2512 7.996098 AATAGAGTTTTTAGTGCTAGCCAAA 57.004 32.000 13.29 7.18 0.00 3.28
2324 2542 6.998673 GCCATAGTATTGGAAATACTCTGGTT 59.001 38.462 27.78 8.48 44.28 3.67
2325 2543 6.101150 TGCCATAGTATTGGAAATACTCTGGT 59.899 38.462 27.78 11.02 44.28 4.00
2326 2544 6.533730 TGCCATAGTATTGGAAATACTCTGG 58.466 40.000 25.59 25.59 44.78 3.86
2327 2545 8.450578 TTTGCCATAGTATTGGAAATACTCTG 57.549 34.615 14.30 14.21 39.25 3.35
2328 2546 9.646522 AATTTGCCATAGTATTGGAAATACTCT 57.353 29.630 14.30 4.52 39.25 3.24
2329 2547 9.899226 GAATTTGCCATAGTATTGGAAATACTC 57.101 33.333 14.30 5.92 39.25 2.59
2330 2548 9.646522 AGAATTTGCCATAGTATTGGAAATACT 57.353 29.630 15.04 15.04 39.25 2.12
2331 2549 9.899226 GAGAATTTGCCATAGTATTGGAAATAC 57.101 33.333 12.25 2.55 39.25 1.89
2332 2550 9.866655 AGAGAATTTGCCATAGTATTGGAAATA 57.133 29.630 12.25 0.00 39.25 1.40
2333 2551 8.636213 CAGAGAATTTGCCATAGTATTGGAAAT 58.364 33.333 7.60 7.60 39.25 2.17
2334 2552 7.615365 ACAGAGAATTTGCCATAGTATTGGAAA 59.385 33.333 3.82 3.82 39.25 3.13
2335 2553 7.118723 ACAGAGAATTTGCCATAGTATTGGAA 58.881 34.615 0.00 0.00 39.25 3.53
2337 2555 6.769822 AGACAGAGAATTTGCCATAGTATTGG 59.230 38.462 0.00 0.00 39.94 3.16
2338 2556 7.798596 AGACAGAGAATTTGCCATAGTATTG 57.201 36.000 0.00 0.00 0.00 1.90
2340 2558 9.905713 TTTTAGACAGAGAATTTGCCATAGTAT 57.094 29.630 0.00 0.00 0.00 2.12
2368 2586 5.772393 AAAAAGAGGTTTGGGGTTCTTTT 57.228 34.783 5.50 5.50 46.27 2.27
2492 2822 5.376625 ACTAATTCTCTGTTGACTTGGCAA 58.623 37.500 0.00 0.00 0.00 4.52
2699 3224 1.379443 TCCACGACCGCACCTCTAT 60.379 57.895 0.00 0.00 0.00 1.98
2754 3313 0.108281 GAGGAGTGGAAACGGCTACC 60.108 60.000 0.00 0.00 0.00 3.18
2755 3314 0.458025 CGAGGAGTGGAAACGGCTAC 60.458 60.000 0.00 0.00 0.00 3.58
2756 3315 0.609957 TCGAGGAGTGGAAACGGCTA 60.610 55.000 0.00 0.00 0.00 3.93
2757 3316 1.878656 CTCGAGGAGTGGAAACGGCT 61.879 60.000 3.91 0.00 0.00 5.52
2758 3317 1.446272 CTCGAGGAGTGGAAACGGC 60.446 63.158 3.91 0.00 0.00 5.68
2759 3318 1.446272 GCTCGAGGAGTGGAAACGG 60.446 63.158 15.58 0.00 31.39 4.44
2760 3319 1.446272 GGCTCGAGGAGTGGAAACG 60.446 63.158 15.58 0.00 31.39 3.60
2761 3320 1.446272 CGGCTCGAGGAGTGGAAAC 60.446 63.158 15.58 0.00 31.39 2.78
2762 3321 2.970639 CGGCTCGAGGAGTGGAAA 59.029 61.111 15.58 0.00 31.39 3.13
2763 3322 3.760035 GCGGCTCGAGGAGTGGAA 61.760 66.667 15.58 0.00 31.39 3.53
2766 3325 4.803426 GTGGCGGCTCGAGGAGTG 62.803 72.222 15.58 0.00 31.39 3.51
2780 3339 3.792053 GAGATGGCTACCGCGGTGG 62.792 68.421 40.02 37.22 46.41 4.61
2781 3340 2.279517 GAGATGGCTACCGCGGTG 60.280 66.667 40.02 28.43 36.88 4.94
2782 3341 3.537874 GGAGATGGCTACCGCGGT 61.538 66.667 36.01 36.01 36.88 5.68
2783 3342 4.301027 GGGAGATGGCTACCGCGG 62.301 72.222 26.86 26.86 34.78 6.46
2813 3405 0.744414 CCGGTCAACATCGCCTGAAT 60.744 55.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.