Multiple sequence alignment - TraesCS7D01G195100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G195100 chr7D 100.000 3067 0 0 1 3067 151792449 151789383 0.000000e+00 5664.0
1 TraesCS7D01G195100 chr7D 94.063 1718 83 2 455 2153 151917513 151915796 0.000000e+00 2590.0
2 TraesCS7D01G195100 chr7D 89.940 1163 91 10 940 2082 151770228 151769072 0.000000e+00 1476.0
3 TraesCS7D01G195100 chr7D 94.311 457 10 3 2 458 151917997 151917557 0.000000e+00 686.0
4 TraesCS7D01G195100 chr7D 97.541 244 6 0 2824 3067 551800319 551800562 4.730000e-113 418.0
5 TraesCS7D01G195100 chr7D 86.280 379 37 5 2335 2710 151915799 151915433 6.160000e-107 398.0
6 TraesCS7D01G195100 chr7D 96.053 228 9 0 2840 3067 151406601 151406374 3.730000e-99 372.0
7 TraesCS7D01G195100 chr7D 90.763 249 9 1 2819 3067 637221239 637221473 1.370000e-83 320.0
8 TraesCS7D01G195100 chr7D 95.385 195 8 1 2144 2338 484322068 484321875 2.970000e-80 309.0
9 TraesCS7D01G195100 chr7D 85.185 108 5 6 35 137 506679433 506679534 1.950000e-17 100.0
10 TraesCS7D01G195100 chr7D 87.952 83 6 2 35 113 604292592 604292674 9.050000e-16 95.3
11 TraesCS7D01G195100 chr7A 91.061 1734 108 15 455 2149 151962107 151960382 0.000000e+00 2300.0
12 TraesCS7D01G195100 chr7A 89.681 1066 97 6 1023 2082 151874318 151875376 0.000000e+00 1347.0
13 TraesCS7D01G195100 chr7A 93.600 875 41 5 1294 2153 151863053 151863927 0.000000e+00 1291.0
14 TraesCS7D01G195100 chr7A 90.299 804 63 3 1294 2082 152084772 152085575 0.000000e+00 1038.0
15 TraesCS7D01G195100 chr7A 91.365 498 37 6 2335 2828 151960379 151959884 0.000000e+00 676.0
16 TraesCS7D01G195100 chr7A 85.022 454 48 11 2335 2775 151956447 151956001 7.800000e-121 444.0
17 TraesCS7D01G195100 chr7A 90.030 331 27 4 2449 2774 151868413 151868742 1.020000e-114 424.0
18 TraesCS7D01G195100 chr7A 93.220 118 8 0 2335 2452 151863924 151864041 1.130000e-39 174.0
19 TraesCS7D01G195100 chr7A 89.706 68 4 3 20 85 374987675 374987609 1.960000e-12 84.2
20 TraesCS7D01G195100 chr7A 88.333 60 6 1 2770 2828 151855163 151855222 1.530000e-08 71.3
21 TraesCS7D01G195100 chr7B 92.361 1309 74 7 868 2153 113922418 113923723 0.000000e+00 1840.0
22 TraesCS7D01G195100 chr7B 92.025 1141 68 6 961 2082 113802870 113801734 0.000000e+00 1581.0
23 TraesCS7D01G195100 chr7B 93.765 417 18 4 455 866 113915017 113915430 1.210000e-173 619.0
24 TraesCS7D01G195100 chr7B 82.566 304 37 6 2528 2817 113575377 113575076 1.410000e-63 254.0
25 TraesCS7D01G195100 chr7B 90.751 173 15 1 2335 2506 113923720 113923892 2.380000e-56 230.0
26 TraesCS7D01G195100 chr7B 89.320 103 3 4 35 137 474550495 474550589 4.150000e-24 122.0
27 TraesCS7D01G195100 chr7B 98.039 51 1 0 2492 2542 113923923 113923973 4.210000e-14 89.8
28 TraesCS7D01G195100 chrUn 86.408 1648 140 31 455 2051 235703145 235701531 0.000000e+00 1725.0
29 TraesCS7D01G195100 chrUn 86.286 1648 142 31 455 2051 85700537 85702151 0.000000e+00 1714.0
30 TraesCS7D01G195100 chrUn 83.997 1531 161 38 455 1926 85623902 85625407 0.000000e+00 1393.0
31 TraesCS7D01G195100 chrUn 91.803 61 3 2 25 85 29029295 29029237 1.960000e-12 84.2
32 TraesCS7D01G195100 chrUn 96.000 50 2 0 36 85 16901709 16901660 7.050000e-12 82.4
33 TraesCS7D01G195100 chrUn 94.340 53 2 1 34 85 115235602 115235550 2.540000e-11 80.5
34 TraesCS7D01G195100 chrUn 94.000 50 3 0 36 85 316200539 316200588 3.280000e-10 76.8
35 TraesCS7D01G195100 chrUn 97.674 43 1 0 41 83 55725044 55725002 1.180000e-09 75.0
36 TraesCS7D01G195100 chrUn 93.878 49 3 0 36 84 180382753 180382705 1.180000e-09 75.0
37 TraesCS7D01G195100 chrUn 88.000 50 5 1 36 85 320256098 320256146 1.190000e-04 58.4
38 TraesCS7D01G195100 chrUn 88.000 50 5 1 36 85 357700748 357700796 1.190000e-04 58.4
39 TraesCS7D01G195100 chr1A 83.294 1694 175 58 455 2066 539322609 539324276 0.000000e+00 1461.0
40 TraesCS7D01G195100 chr1A 93.333 60 3 1 26 85 133417454 133417512 1.510000e-13 87.9
41 TraesCS7D01G195100 chr1A 92.063 63 3 2 24 85 551487759 551487820 1.510000e-13 87.9
42 TraesCS7D01G195100 chr5D 96.443 253 9 0 2815 3067 480555360 480555108 4.730000e-113 418.0
43 TraesCS7D01G195100 chr5D 96.392 194 6 1 2148 2341 130661323 130661515 4.930000e-83 318.0
44 TraesCS7D01G195100 chr5D 93.548 62 3 1 24 85 483518183 483518243 1.170000e-14 91.6
45 TraesCS7D01G195100 chr5D 94.545 55 3 0 31 85 411166217 411166163 5.450000e-13 86.1
46 TraesCS7D01G195100 chr1D 96.748 246 8 0 2822 3067 250589748 250589993 7.910000e-111 411.0
47 TraesCS7D01G195100 chr1D 96.316 190 7 0 2152 2341 93501167 93500978 2.300000e-81 313.0
48 TraesCS7D01G195100 chr1D 94.527 201 9 2 2137 2335 176953172 176952972 2.970000e-80 309.0
49 TraesCS7D01G195100 chr1D 98.000 50 1 0 34 83 481017025 481017074 1.510000e-13 87.9
50 TraesCS7D01G195100 chr6D 96.842 190 5 1 2150 2339 454002990 454003178 1.770000e-82 316.0
51 TraesCS7D01G195100 chr6D 85.366 82 11 1 33 113 58433754 58433835 1.960000e-12 84.2
52 TraesCS7D01G195100 chr6D 80.992 121 8 7 25 136 50742256 50742370 7.050000e-12 82.4
53 TraesCS7D01G195100 chr6D 86.250 80 6 1 34 113 386924868 386924942 7.050000e-12 82.4
54 TraesCS7D01G195100 chr6D 95.918 49 2 0 35 83 370690845 370690797 2.540000e-11 80.5
55 TraesCS7D01G195100 chr6D 94.118 51 3 0 35 85 428481647 428481597 9.120000e-11 78.7
56 TraesCS7D01G195100 chr6D 94.000 50 3 0 36 85 437774134 437774085 3.280000e-10 76.8
57 TraesCS7D01G195100 chr5B 96.809 188 6 0 2148 2335 447830851 447830664 6.380000e-82 315.0
58 TraesCS7D01G195100 chr5B 95.833 192 8 0 2150 2341 697854866 697855057 8.260000e-81 311.0
59 TraesCS7D01G195100 chr5B 100.000 28 0 0 115 142 75335188 75335161 6.000000e-03 52.8
60 TraesCS7D01G195100 chr5B 100.000 28 0 0 115 142 75739968 75739941 6.000000e-03 52.8
61 TraesCS7D01G195100 chr2D 96.809 188 6 0 2148 2335 33026536 33026723 6.380000e-82 315.0
62 TraesCS7D01G195100 chr2D 84.615 104 7 6 37 137 83966685 83966782 9.050000e-16 95.3
63 TraesCS7D01G195100 chr4D 95.833 192 8 0 2144 2335 118518621 118518430 8.260000e-81 311.0
64 TraesCS7D01G195100 chr4D 87.387 111 3 4 32 141 16247825 16247725 1.930000e-22 117.0
65 TraesCS7D01G195100 chr4D 85.000 100 15 0 2824 2923 110043431 110043332 5.410000e-18 102.0
66 TraesCS7D01G195100 chr4D 98.148 54 1 0 31 84 287295659 287295712 9.050000e-16 95.3
67 TraesCS7D01G195100 chr4D 97.959 49 1 0 36 84 334628284 334628236 5.450000e-13 86.1
68 TraesCS7D01G195100 chr4D 93.220 59 3 1 27 85 469504375 469504318 5.450000e-13 86.1
69 TraesCS7D01G195100 chr4D 90.000 60 6 0 26 85 270678643 270678584 9.120000e-11 78.7
70 TraesCS7D01G195100 chr6B 91.892 111 8 1 2824 2934 713046754 713046645 1.470000e-33 154.0
71 TraesCS7D01G195100 chr6B 81.034 116 6 7 35 150 603899019 603898920 9.120000e-11 78.7
72 TraesCS7D01G195100 chr3D 96.296 54 2 0 32 85 12881655 12881708 4.210000e-14 89.8
73 TraesCS7D01G195100 chr3A 76.786 168 33 5 2820 2985 580459339 580459502 4.210000e-14 89.8
74 TraesCS7D01G195100 chr3A 80.734 109 5 6 35 143 524076472 524076380 1.530000e-08 71.3
75 TraesCS7D01G195100 chr5A 83.333 102 9 6 35 136 410509941 410510034 1.510000e-13 87.9
76 TraesCS7D01G195100 chr5A 77.246 167 27 9 2824 2985 599337159 599336999 1.510000e-13 87.9
77 TraesCS7D01G195100 chr3B 82.727 110 5 7 36 144 606166615 606166711 5.450000e-13 86.1
78 TraesCS7D01G195100 chr2A 82.857 105 8 6 36 136 746253397 746253495 5.450000e-13 86.1
79 TraesCS7D01G195100 chr6A 90.625 64 4 2 22 85 617249187 617249248 1.960000e-12 84.2
80 TraesCS7D01G195100 chr6A 78.505 107 7 7 36 142 286321115 286321205 4.270000e-04 56.5
81 TraesCS7D01G195100 chr1B 80.909 110 5 9 35 144 41366287 41366380 4.240000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G195100 chr7D 151789383 151792449 3066 True 5664.000000 5664 100.000000 1 3067 1 chr7D.!!$R3 3066
1 TraesCS7D01G195100 chr7D 151769072 151770228 1156 True 1476.000000 1476 89.940000 940 2082 1 chr7D.!!$R2 1142
2 TraesCS7D01G195100 chr7D 151915433 151917997 2564 True 1224.666667 2590 91.551333 2 2710 3 chr7D.!!$R5 2708
3 TraesCS7D01G195100 chr7A 151874318 151875376 1058 False 1347.000000 1347 89.681000 1023 2082 1 chr7A.!!$F3 1059
4 TraesCS7D01G195100 chr7A 151956001 151962107 6106 True 1140.000000 2300 89.149333 455 2828 3 chr7A.!!$R2 2373
5 TraesCS7D01G195100 chr7A 152084772 152085575 803 False 1038.000000 1038 90.299000 1294 2082 1 chr7A.!!$F4 788
6 TraesCS7D01G195100 chr7A 151863053 151864041 988 False 732.500000 1291 93.410000 1294 2452 2 chr7A.!!$F5 1158
7 TraesCS7D01G195100 chr7B 113801734 113802870 1136 True 1581.000000 1581 92.025000 961 2082 1 chr7B.!!$R2 1121
8 TraesCS7D01G195100 chr7B 113922418 113923973 1555 False 719.933333 1840 93.717000 868 2542 3 chr7B.!!$F3 1674
9 TraesCS7D01G195100 chrUn 235701531 235703145 1614 True 1725.000000 1725 86.408000 455 2051 1 chrUn.!!$R6 1596
10 TraesCS7D01G195100 chrUn 85700537 85702151 1614 False 1714.000000 1714 86.286000 455 2051 1 chrUn.!!$F2 1596
11 TraesCS7D01G195100 chrUn 85623902 85625407 1505 False 1393.000000 1393 83.997000 455 1926 1 chrUn.!!$F1 1471
12 TraesCS7D01G195100 chr1A 539322609 539324276 1667 False 1461.000000 1461 83.294000 455 2066 1 chr1A.!!$F2 1611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.895559 GGTTGGCCTCTTTCCCACTG 60.896 60.0 3.32 0.0 0.00 3.66 F
1053 1223 0.397941 TGCTGGTTCTTGCAGCTAGT 59.602 50.0 0.00 0.0 42.03 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1936 1.001269 TGTCCAGAGACGGGTCGAT 60.001 57.895 0.0 0.0 46.74 3.59 R
2790 6999 0.036010 ACCACATGAAGGAAGAGGCG 60.036 55.000 14.4 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 6.037391 GTGAGTAGTAGTGATCTAAACGCTCT 59.963 42.308 0.00 0.00 0.00 4.09
107 108 6.037281 TGAGTAGTAGTGATCTAAACGCTCTG 59.963 42.308 0.00 0.00 0.00 3.35
108 109 6.114089 AGTAGTAGTGATCTAAACGCTCTGA 58.886 40.000 0.00 0.00 0.00 3.27
109 110 6.768861 AGTAGTAGTGATCTAAACGCTCTGAT 59.231 38.462 0.00 0.00 0.00 2.90
110 111 7.932491 AGTAGTAGTGATCTAAACGCTCTGATA 59.068 37.037 0.00 0.00 0.00 2.15
111 112 7.753309 AGTAGTGATCTAAACGCTCTGATAT 57.247 36.000 0.00 0.00 0.00 1.63
195 196 0.895559 GGTTGGCCTCTTTCCCACTG 60.896 60.000 3.32 0.00 0.00 3.66
243 244 1.283736 AACCGTCACGTCTTGTTGAC 58.716 50.000 0.00 0.00 42.06 3.18
329 330 5.935206 TGCATTCGTTCCTTAACACTATCAA 59.065 36.000 0.00 0.00 35.16 2.57
336 337 6.371389 GTTCCTTAACACTATCAACAGCAAC 58.629 40.000 0.00 0.00 35.56 4.17
471 519 2.578495 GCATTGAAGCAACAAGTCTCG 58.422 47.619 2.47 0.00 33.22 4.04
738 848 3.106242 TGACTTCTTCGTTTAGCTGCA 57.894 42.857 1.02 0.00 0.00 4.41
821 947 6.017440 GTGTACACACATAACAGGTTGTCAAT 60.017 38.462 21.14 0.00 45.75 2.57
846 983 2.283101 ACGTTGGCATGCACCCAT 60.283 55.556 21.36 0.00 31.26 4.00
866 1004 2.581409 CTACGTAACCAGCCGGCG 60.581 66.667 23.20 16.10 34.57 6.46
876 1018 1.000506 ACCAGCCGGCGTGTATATAAG 59.999 52.381 23.20 7.52 34.57 1.73
989 1152 8.225603 TGGAGCTTAATTTGATCCTGTAATTC 57.774 34.615 13.89 0.00 40.35 2.17
1053 1223 0.397941 TGCTGGTTCTTGCAGCTAGT 59.602 50.000 0.00 0.00 42.03 2.57
1056 1226 2.771089 CTGGTTCTTGCAGCTAGTTCA 58.229 47.619 3.65 1.19 0.00 3.18
1275 1468 8.146479 TCATGAAATGTATGCTTACATGTCTC 57.854 34.615 29.25 22.23 46.68 3.36
1544 1737 1.375098 GGAGAGACGGTAGGGTGTCG 61.375 65.000 0.00 0.00 40.05 4.35
1728 1936 0.976641 CAACACTACCTCTGGCCTCA 59.023 55.000 3.32 0.00 0.00 3.86
1863 2071 1.676635 AGCTACTACCGCCACGTCA 60.677 57.895 0.00 0.00 0.00 4.35
1976 2184 1.139853 GATGGCGAGTTCTTCAGGGAT 59.860 52.381 0.00 0.00 0.00 3.85
2057 2265 4.829968 AGATCAGGAAGAAGTGTCATGTG 58.170 43.478 0.00 0.00 0.00 3.21
2098 2306 2.250031 TCTTTACTGTAAGGGGACGCA 58.750 47.619 9.44 0.00 39.30 5.24
2101 2309 2.684001 TACTGTAAGGGGACGCATTG 57.316 50.000 0.00 0.00 39.30 2.82
2154 2362 9.470399 TGTAGTAGTGTGACTTATTATTGAGGA 57.530 33.333 0.00 0.00 0.00 3.71
2155 2363 9.953697 GTAGTAGTGTGACTTATTATTGAGGAG 57.046 37.037 0.00 0.00 0.00 3.69
2157 2365 6.875972 AGTGTGACTTATTATTGAGGAGGT 57.124 37.500 0.00 0.00 0.00 3.85
2158 2366 6.644347 AGTGTGACTTATTATTGAGGAGGTG 58.356 40.000 0.00 0.00 0.00 4.00
2160 2368 6.879458 GTGTGACTTATTATTGAGGAGGTGTT 59.121 38.462 0.00 0.00 0.00 3.32
2161 2369 7.390718 GTGTGACTTATTATTGAGGAGGTGTTT 59.609 37.037 0.00 0.00 0.00 2.83
2162 2370 7.390440 TGTGACTTATTATTGAGGAGGTGTTTG 59.610 37.037 0.00 0.00 0.00 2.93
2163 2371 6.884295 TGACTTATTATTGAGGAGGTGTTTGG 59.116 38.462 0.00 0.00 0.00 3.28
2164 2372 6.790319 ACTTATTATTGAGGAGGTGTTTGGT 58.210 36.000 0.00 0.00 0.00 3.67
2165 2373 7.238710 ACTTATTATTGAGGAGGTGTTTGGTT 58.761 34.615 0.00 0.00 0.00 3.67
2166 2374 7.393515 ACTTATTATTGAGGAGGTGTTTGGTTC 59.606 37.037 0.00 0.00 0.00 3.62
2167 2375 3.593442 ATTGAGGAGGTGTTTGGTTCA 57.407 42.857 0.00 0.00 0.00 3.18
2168 2376 2.638480 TGAGGAGGTGTTTGGTTCAG 57.362 50.000 0.00 0.00 0.00 3.02
2169 2377 2.123589 TGAGGAGGTGTTTGGTTCAGA 58.876 47.619 0.00 0.00 0.00 3.27
2170 2378 2.507886 TGAGGAGGTGTTTGGTTCAGAA 59.492 45.455 0.00 0.00 0.00 3.02
2171 2379 3.142174 GAGGAGGTGTTTGGTTCAGAAG 58.858 50.000 0.00 0.00 0.00 2.85
2172 2380 2.509964 AGGAGGTGTTTGGTTCAGAAGT 59.490 45.455 0.00 0.00 0.00 3.01
2173 2381 2.879026 GGAGGTGTTTGGTTCAGAAGTC 59.121 50.000 0.00 0.00 0.00 3.01
2174 2382 2.879026 GAGGTGTTTGGTTCAGAAGTCC 59.121 50.000 0.00 0.00 0.00 3.85
2175 2383 2.509964 AGGTGTTTGGTTCAGAAGTCCT 59.490 45.455 0.00 0.00 0.00 3.85
2176 2384 3.714798 AGGTGTTTGGTTCAGAAGTCCTA 59.285 43.478 0.00 0.00 0.00 2.94
2177 2385 4.065789 GGTGTTTGGTTCAGAAGTCCTAG 58.934 47.826 0.00 0.00 0.00 3.02
2178 2386 4.065789 GTGTTTGGTTCAGAAGTCCTAGG 58.934 47.826 0.82 0.82 0.00 3.02
2179 2387 3.971305 TGTTTGGTTCAGAAGTCCTAGGA 59.029 43.478 7.62 7.62 0.00 2.94
2180 2388 4.202326 TGTTTGGTTCAGAAGTCCTAGGAC 60.202 45.833 31.29 31.29 44.86 3.85
2239 2447 9.106070 CTCTCTAGTAGAGTCTTTTTCTAGTCC 57.894 40.741 23.51 0.00 45.85 3.85
2240 2448 8.048514 TCTCTAGTAGAGTCTTTTTCTAGTCCC 58.951 40.741 23.51 0.00 42.83 4.46
2241 2449 7.931046 TCTAGTAGAGTCTTTTTCTAGTCCCT 58.069 38.462 0.00 0.00 33.84 4.20
2242 2450 8.048514 TCTAGTAGAGTCTTTTTCTAGTCCCTC 58.951 40.741 0.00 0.00 33.84 4.30
2243 2451 6.796648 AGTAGAGTCTTTTTCTAGTCCCTCT 58.203 40.000 0.00 0.00 0.00 3.69
2244 2452 7.931046 AGTAGAGTCTTTTTCTAGTCCCTCTA 58.069 38.462 0.00 0.00 0.00 2.43
2245 2453 8.050930 AGTAGAGTCTTTTTCTAGTCCCTCTAG 58.949 40.741 0.00 0.00 45.37 2.43
2255 2463 5.601583 CTAGTCCCTCTAGAAAAAGTCCC 57.398 47.826 0.00 0.00 46.53 4.46
2256 2464 4.149090 AGTCCCTCTAGAAAAAGTCCCT 57.851 45.455 0.00 0.00 0.00 4.20
2257 2465 4.098155 AGTCCCTCTAGAAAAAGTCCCTC 58.902 47.826 0.00 0.00 0.00 4.30
2258 2466 3.198200 GTCCCTCTAGAAAAAGTCCCTCC 59.802 52.174 0.00 0.00 0.00 4.30
2259 2467 2.506231 CCCTCTAGAAAAAGTCCCTCCC 59.494 54.545 0.00 0.00 0.00 4.30
2260 2468 2.168728 CCTCTAGAAAAAGTCCCTCCCG 59.831 54.545 0.00 0.00 0.00 5.14
2261 2469 2.832733 CTCTAGAAAAAGTCCCTCCCGT 59.167 50.000 0.00 0.00 0.00 5.28
2262 2470 3.245441 TCTAGAAAAAGTCCCTCCCGTT 58.755 45.455 0.00 0.00 0.00 4.44
2263 2471 3.649502 TCTAGAAAAAGTCCCTCCCGTTT 59.350 43.478 0.00 0.00 0.00 3.60
2264 2472 2.583143 AGAAAAAGTCCCTCCCGTTTG 58.417 47.619 0.00 0.00 0.00 2.93
2265 2473 1.611977 GAAAAAGTCCCTCCCGTTTGG 59.388 52.381 0.00 0.00 0.00 3.28
2266 2474 0.554305 AAAAGTCCCTCCCGTTTGGT 59.446 50.000 0.00 0.00 34.77 3.67
2267 2475 0.554305 AAAGTCCCTCCCGTTTGGTT 59.446 50.000 0.00 0.00 34.77 3.67
2268 2476 0.109913 AAGTCCCTCCCGTTTGGTTC 59.890 55.000 0.00 0.00 34.77 3.62
2269 2477 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
2270 2478 1.462627 TCCCTCCCGTTTGGTTCCT 60.463 57.895 0.00 0.00 34.77 3.36
2271 2479 1.303317 CCCTCCCGTTTGGTTCCTG 60.303 63.158 0.00 0.00 34.77 3.86
2272 2480 1.303317 CCTCCCGTTTGGTTCCTGG 60.303 63.158 0.00 0.00 34.77 4.45
2273 2481 1.303317 CTCCCGTTTGGTTCCTGGG 60.303 63.158 0.00 0.00 41.43 4.45
2274 2482 2.282887 CCCGTTTGGTTCCTGGGG 60.283 66.667 0.00 0.00 36.16 4.96
2275 2483 2.836187 CCCGTTTGGTTCCTGGGGA 61.836 63.158 0.00 0.00 36.82 4.81
2276 2484 1.382629 CCGTTTGGTTCCTGGGGAT 59.617 57.895 0.00 0.00 0.00 3.85
2277 2485 0.251608 CCGTTTGGTTCCTGGGGATT 60.252 55.000 0.00 0.00 0.00 3.01
2278 2486 1.627864 CGTTTGGTTCCTGGGGATTT 58.372 50.000 0.00 0.00 0.00 2.17
2279 2487 1.967779 CGTTTGGTTCCTGGGGATTTT 59.032 47.619 0.00 0.00 0.00 1.82
2280 2488 2.367241 CGTTTGGTTCCTGGGGATTTTT 59.633 45.455 0.00 0.00 0.00 1.94
2304 2512 4.209307 GGGACTTTTTCTAGTCTCTGGG 57.791 50.000 0.00 0.00 41.50 4.45
2305 2513 3.838903 GGGACTTTTTCTAGTCTCTGGGA 59.161 47.826 0.00 0.00 41.50 4.37
2306 2514 4.322877 GGGACTTTTTCTAGTCTCTGGGAC 60.323 50.000 0.00 0.00 41.50 4.46
2328 2536 6.783708 ACTAAAAAGTCCATGAACCAAACA 57.216 33.333 0.00 0.00 0.00 2.83
2329 2537 6.569780 ACTAAAAAGTCCATGAACCAAACAC 58.430 36.000 0.00 0.00 0.00 3.32
2330 2538 4.400529 AAAAGTCCATGAACCAAACACC 57.599 40.909 0.00 0.00 0.00 4.16
2331 2539 1.995376 AGTCCATGAACCAAACACCC 58.005 50.000 0.00 0.00 0.00 4.61
2332 2540 0.966179 GTCCATGAACCAAACACCCC 59.034 55.000 0.00 0.00 0.00 4.95
2333 2541 0.178947 TCCATGAACCAAACACCCCC 60.179 55.000 0.00 0.00 0.00 5.40
2356 2564 7.915397 CCCCTGAGTAAAAATCATTTATTCACG 59.085 37.037 3.07 0.00 30.78 4.35
2438 2648 7.685155 GCAAAGCCATGATACCAATAGATTTGT 60.685 37.037 0.00 0.00 33.00 2.83
2563 6760 9.667107 TTGATAAAGTCTTGTATGGACTAAAGG 57.333 33.333 0.00 0.00 42.39 3.11
2594 6791 5.781210 TTTTCAGGATATTGTTGTGTGCA 57.219 34.783 0.00 0.00 0.00 4.57
2600 6797 6.707608 TCAGGATATTGTTGTGTGCATATCTC 59.292 38.462 0.00 0.00 0.00 2.75
2601 6798 6.000219 AGGATATTGTTGTGTGCATATCTCC 59.000 40.000 0.00 0.00 0.00 3.71
2602 6799 5.764686 GGATATTGTTGTGTGCATATCTCCA 59.235 40.000 0.00 0.00 0.00 3.86
2612 6810 7.333323 TGTGTGCATATCTCCATATTGATAGG 58.667 38.462 0.00 0.00 32.25 2.57
2667 6866 1.203523 GTACACACAGAGAGCCCAGAG 59.796 57.143 0.00 0.00 0.00 3.35
2671 6870 0.531657 CACAGAGAGCCCAGAGACAG 59.468 60.000 0.00 0.00 0.00 3.51
2672 6871 0.407528 ACAGAGAGCCCAGAGACAGA 59.592 55.000 0.00 0.00 0.00 3.41
2705 6904 4.161377 AGAAGGAAGAGTATGAGTTGAGCC 59.839 45.833 0.00 0.00 0.00 4.70
2710 6909 2.025155 GAGTATGAGTTGAGCCGAGGA 58.975 52.381 0.00 0.00 0.00 3.71
2715 6914 1.691976 TGAGTTGAGCCGAGGAAGAAA 59.308 47.619 0.00 0.00 0.00 2.52
2734 6943 3.518992 AAGGGGTGCAAACTAAAGCTA 57.481 42.857 0.00 0.00 0.00 3.32
2736 6945 2.092323 GGGGTGCAAACTAAAGCTAGG 58.908 52.381 0.00 0.00 0.00 3.02
2743 6952 3.366374 GCAAACTAAAGCTAGGGTTGCAG 60.366 47.826 22.65 8.78 43.27 4.41
2759 6968 6.159751 AGGGTTGCAGGTAAAATCCTATCTAA 59.840 38.462 0.00 0.00 35.87 2.10
2766 6975 8.215736 GCAGGTAAAATCCTATCTAACCCTTTA 58.784 37.037 0.00 0.00 35.87 1.85
2771 6980 5.827326 ATCCTATCTAACCCTTTAGCACC 57.173 43.478 0.00 0.00 35.53 5.01
2775 6984 5.601313 CCTATCTAACCCTTTAGCACCAGTA 59.399 44.000 0.00 0.00 35.53 2.74
2776 6985 4.813750 TCTAACCCTTTAGCACCAGTAC 57.186 45.455 0.00 0.00 35.53 2.73
2777 6986 2.467566 AACCCTTTAGCACCAGTACG 57.532 50.000 0.00 0.00 0.00 3.67
2778 6987 1.636148 ACCCTTTAGCACCAGTACGA 58.364 50.000 0.00 0.00 0.00 3.43
2779 6988 1.549170 ACCCTTTAGCACCAGTACGAG 59.451 52.381 0.00 0.00 0.00 4.18
2780 6989 1.641577 CCTTTAGCACCAGTACGAGC 58.358 55.000 0.00 0.00 0.00 5.03
2781 6990 1.641577 CTTTAGCACCAGTACGAGCC 58.358 55.000 0.00 0.00 0.00 4.70
2782 6991 0.248289 TTTAGCACCAGTACGAGCCC 59.752 55.000 0.00 0.00 0.00 5.19
2783 6992 0.901114 TTAGCACCAGTACGAGCCCA 60.901 55.000 0.00 0.00 0.00 5.36
2784 6993 1.320344 TAGCACCAGTACGAGCCCAG 61.320 60.000 0.00 0.00 0.00 4.45
2785 6994 2.125512 CACCAGTACGAGCCCAGC 60.126 66.667 0.00 0.00 0.00 4.85
2786 6995 2.283966 ACCAGTACGAGCCCAGCT 60.284 61.111 0.00 0.00 43.88 4.24
2787 6996 2.185350 CCAGTACGAGCCCAGCTG 59.815 66.667 6.78 6.78 39.88 4.24
2788 6997 2.650116 CCAGTACGAGCCCAGCTGT 61.650 63.158 13.81 0.00 39.88 4.40
2789 6998 1.446792 CAGTACGAGCCCAGCTGTG 60.447 63.158 13.81 1.33 39.88 3.66
2790 6999 2.815647 GTACGAGCCCAGCTGTGC 60.816 66.667 13.85 13.85 39.88 4.57
2791 7000 4.435436 TACGAGCCCAGCTGTGCG 62.435 66.667 15.71 13.27 39.88 5.34
2797 7006 4.711949 CCCAGCTGTGCGCCTCTT 62.712 66.667 13.81 0.00 40.39 2.85
2798 7007 3.123620 CCAGCTGTGCGCCTCTTC 61.124 66.667 13.81 0.00 40.39 2.87
2799 7008 3.123620 CAGCTGTGCGCCTCTTCC 61.124 66.667 4.18 0.00 40.39 3.46
2800 7009 3.317571 AGCTGTGCGCCTCTTCCT 61.318 61.111 4.18 0.00 40.39 3.36
2801 7010 2.359230 GCTGTGCGCCTCTTCCTT 60.359 61.111 4.18 0.00 0.00 3.36
2802 7011 2.394563 GCTGTGCGCCTCTTCCTTC 61.395 63.158 4.18 0.00 0.00 3.46
2803 7012 1.004560 CTGTGCGCCTCTTCCTTCA 60.005 57.895 4.18 0.00 0.00 3.02
2804 7013 0.392193 CTGTGCGCCTCTTCCTTCAT 60.392 55.000 4.18 0.00 0.00 2.57
2805 7014 0.674581 TGTGCGCCTCTTCCTTCATG 60.675 55.000 4.18 0.00 0.00 3.07
2806 7015 0.674895 GTGCGCCTCTTCCTTCATGT 60.675 55.000 4.18 0.00 0.00 3.21
2807 7016 0.674581 TGCGCCTCTTCCTTCATGTG 60.675 55.000 4.18 0.00 0.00 3.21
2808 7017 1.372087 GCGCCTCTTCCTTCATGTGG 61.372 60.000 0.00 0.00 0.00 4.17
2809 7018 0.036010 CGCCTCTTCCTTCATGTGGT 60.036 55.000 7.23 0.00 0.00 4.16
2810 7019 1.457346 GCCTCTTCCTTCATGTGGTG 58.543 55.000 7.23 3.49 0.00 4.17
2811 7020 1.952367 GCCTCTTCCTTCATGTGGTGG 60.952 57.143 7.23 7.07 0.00 4.61
2812 7021 1.630369 CCTCTTCCTTCATGTGGTGGA 59.370 52.381 7.23 2.15 0.00 4.02
2813 7022 2.240667 CCTCTTCCTTCATGTGGTGGAT 59.759 50.000 7.23 0.00 0.00 3.41
2814 7023 3.308688 CCTCTTCCTTCATGTGGTGGATT 60.309 47.826 7.23 0.00 0.00 3.01
2815 7024 4.080356 CCTCTTCCTTCATGTGGTGGATTA 60.080 45.833 7.23 0.00 0.00 1.75
2816 7025 5.102953 TCTTCCTTCATGTGGTGGATTAG 57.897 43.478 7.23 1.48 0.00 1.73
2817 7026 3.281727 TCCTTCATGTGGTGGATTAGC 57.718 47.619 7.23 0.00 0.00 3.09
2818 7027 2.575735 TCCTTCATGTGGTGGATTAGCA 59.424 45.455 7.23 0.00 0.00 3.49
2819 7028 3.202818 TCCTTCATGTGGTGGATTAGCAT 59.797 43.478 7.23 0.00 39.30 3.79
2820 7029 3.317149 CCTTCATGTGGTGGATTAGCATG 59.683 47.826 0.00 0.00 39.30 4.06
2821 7030 2.934887 TCATGTGGTGGATTAGCATGG 58.065 47.619 0.00 0.00 39.30 3.66
2822 7031 1.338973 CATGTGGTGGATTAGCATGGC 59.661 52.381 0.00 0.00 39.30 4.40
2823 7032 0.625316 TGTGGTGGATTAGCATGGCT 59.375 50.000 0.00 0.00 43.41 4.75
2824 7033 1.843206 TGTGGTGGATTAGCATGGCTA 59.157 47.619 0.00 0.00 40.44 3.93
2825 7034 2.158769 TGTGGTGGATTAGCATGGCTAG 60.159 50.000 0.00 0.00 42.34 3.42
2826 7035 1.421268 TGGTGGATTAGCATGGCTAGG 59.579 52.381 0.00 0.00 42.34 3.02
2827 7036 1.271597 GGTGGATTAGCATGGCTAGGG 60.272 57.143 0.00 0.00 42.34 3.53
2828 7037 0.401738 TGGATTAGCATGGCTAGGGC 59.598 55.000 0.00 0.00 42.34 5.19
2829 7038 0.695347 GGATTAGCATGGCTAGGGCT 59.305 55.000 4.49 4.49 42.34 5.19
2830 7039 1.612726 GGATTAGCATGGCTAGGGCTG 60.613 57.143 8.95 0.00 42.34 4.85
2831 7040 0.403271 ATTAGCATGGCTAGGGCTGG 59.597 55.000 8.95 0.00 42.34 4.85
2832 7041 1.708993 TTAGCATGGCTAGGGCTGGG 61.709 60.000 8.95 0.00 42.34 4.45
2834 7043 4.943252 CATGGCTAGGGCTGGGCG 62.943 72.222 0.00 0.00 39.46 6.13
2837 7046 4.858680 GGCTAGGGCTGGGCGTTC 62.859 72.222 0.00 0.00 38.73 3.95
2839 7048 4.530857 CTAGGGCTGGGCGTTCGG 62.531 72.222 0.00 0.00 0.00 4.30
2856 7065 4.747529 GTTCCCCCGAACCGTCCG 62.748 72.222 0.00 0.00 42.26 4.79
2873 7082 3.692406 GGGTCGGTGCTTCGGTCT 61.692 66.667 0.01 0.00 0.00 3.85
2874 7083 2.342648 GGTCGGTGCTTCGGTCTT 59.657 61.111 0.01 0.00 0.00 3.01
2875 7084 1.301479 GGTCGGTGCTTCGGTCTTT 60.301 57.895 0.01 0.00 0.00 2.52
2876 7085 0.037975 GGTCGGTGCTTCGGTCTTTA 60.038 55.000 0.01 0.00 0.00 1.85
2877 7086 1.606224 GGTCGGTGCTTCGGTCTTTAA 60.606 52.381 0.01 0.00 0.00 1.52
2878 7087 2.137523 GTCGGTGCTTCGGTCTTTAAA 58.862 47.619 0.01 0.00 0.00 1.52
2879 7088 2.545106 GTCGGTGCTTCGGTCTTTAAAA 59.455 45.455 0.00 0.00 0.00 1.52
2880 7089 3.002553 GTCGGTGCTTCGGTCTTTAAAAA 59.997 43.478 0.00 0.00 0.00 1.94
2901 7110 7.841915 AAAAATTTCAGTTGTCCAAAATCGT 57.158 28.000 0.00 0.00 0.00 3.73
2902 7111 7.841915 AAAATTTCAGTTGTCCAAAATCGTT 57.158 28.000 0.00 0.00 0.00 3.85
2903 7112 6.826893 AATTTCAGTTGTCCAAAATCGTTG 57.173 33.333 0.00 0.00 0.00 4.10
2904 7113 5.568685 TTTCAGTTGTCCAAAATCGTTGA 57.431 34.783 0.00 0.00 0.00 3.18
2905 7114 4.545823 TCAGTTGTCCAAAATCGTTGAC 57.454 40.909 0.00 0.00 0.00 3.18
2906 7115 3.314080 TCAGTTGTCCAAAATCGTTGACC 59.686 43.478 0.00 0.00 0.00 4.02
2907 7116 2.289547 AGTTGTCCAAAATCGTTGACCG 59.710 45.455 0.00 0.00 38.13 4.79
2924 7133 3.411808 CGATCGGTCAACGGAAAGA 57.588 52.632 7.38 0.00 44.45 2.52
2925 7134 1.269166 CGATCGGTCAACGGAAAGAG 58.731 55.000 7.38 0.00 44.45 2.85
2926 7135 1.000145 GATCGGTCAACGGAAAGAGC 59.000 55.000 0.00 0.00 44.45 4.09
2927 7136 0.320374 ATCGGTCAACGGAAAGAGCA 59.680 50.000 0.00 0.00 44.45 4.26
2928 7137 0.599204 TCGGTCAACGGAAAGAGCAC 60.599 55.000 0.00 0.00 44.45 4.40
2929 7138 0.878523 CGGTCAACGGAAAGAGCACA 60.879 55.000 0.00 0.00 39.42 4.57
2930 7139 1.305201 GGTCAACGGAAAGAGCACAA 58.695 50.000 0.00 0.00 32.77 3.33
2931 7140 1.673920 GGTCAACGGAAAGAGCACAAA 59.326 47.619 0.00 0.00 32.77 2.83
2932 7141 2.540973 GGTCAACGGAAAGAGCACAAAC 60.541 50.000 0.00 0.00 32.77 2.93
2933 7142 1.673920 TCAACGGAAAGAGCACAAACC 59.326 47.619 0.00 0.00 0.00 3.27
2934 7143 0.661020 AACGGAAAGAGCACAAACCG 59.339 50.000 0.00 0.00 44.77 4.44
2935 7144 0.179067 ACGGAAAGAGCACAAACCGA 60.179 50.000 15.93 0.00 42.40 4.69
2936 7145 1.156736 CGGAAAGAGCACAAACCGAT 58.843 50.000 0.00 0.00 42.40 4.18
2937 7146 1.135972 CGGAAAGAGCACAAACCGATG 60.136 52.381 0.00 0.00 42.40 3.84
2938 7147 2.151202 GGAAAGAGCACAAACCGATGA 58.849 47.619 0.00 0.00 0.00 2.92
2939 7148 2.552315 GGAAAGAGCACAAACCGATGAA 59.448 45.455 0.00 0.00 0.00 2.57
2940 7149 3.191371 GGAAAGAGCACAAACCGATGAAT 59.809 43.478 0.00 0.00 0.00 2.57
2941 7150 3.837213 AAGAGCACAAACCGATGAATG 57.163 42.857 0.00 0.00 0.00 2.67
2942 7151 3.057969 AGAGCACAAACCGATGAATGA 57.942 42.857 0.00 0.00 0.00 2.57
2943 7152 2.744202 AGAGCACAAACCGATGAATGAC 59.256 45.455 0.00 0.00 0.00 3.06
2944 7153 1.812571 AGCACAAACCGATGAATGACC 59.187 47.619 0.00 0.00 0.00 4.02
2945 7154 1.465689 GCACAAACCGATGAATGACCG 60.466 52.381 0.00 0.00 0.00 4.79
2946 7155 0.802494 ACAAACCGATGAATGACCGC 59.198 50.000 0.00 0.00 0.00 5.68
2947 7156 0.801872 CAAACCGATGAATGACCGCA 59.198 50.000 0.00 0.00 0.00 5.69
2948 7157 0.802494 AAACCGATGAATGACCGCAC 59.198 50.000 0.00 0.00 0.00 5.34
2949 7158 0.036388 AACCGATGAATGACCGCACT 60.036 50.000 0.00 0.00 0.00 4.40
2950 7159 0.821517 ACCGATGAATGACCGCACTA 59.178 50.000 0.00 0.00 0.00 2.74
2951 7160 1.206132 ACCGATGAATGACCGCACTAA 59.794 47.619 0.00 0.00 0.00 2.24
2952 7161 1.860950 CCGATGAATGACCGCACTAAG 59.139 52.381 0.00 0.00 0.00 2.18
2953 7162 2.481276 CCGATGAATGACCGCACTAAGA 60.481 50.000 0.00 0.00 0.00 2.10
2954 7163 3.384668 CGATGAATGACCGCACTAAGAT 58.615 45.455 0.00 0.00 0.00 2.40
2955 7164 3.804325 CGATGAATGACCGCACTAAGATT 59.196 43.478 0.00 0.00 0.00 2.40
2956 7165 4.271049 CGATGAATGACCGCACTAAGATTT 59.729 41.667 0.00 0.00 0.00 2.17
2957 7166 5.557136 CGATGAATGACCGCACTAAGATTTC 60.557 44.000 0.00 0.00 0.00 2.17
2958 7167 3.616821 TGAATGACCGCACTAAGATTTCG 59.383 43.478 0.00 0.00 0.00 3.46
2959 7168 2.004583 TGACCGCACTAAGATTTCGG 57.995 50.000 0.00 0.00 45.04 4.30
2962 7171 1.287425 CCGCACTAAGATTTCGGTCC 58.713 55.000 0.00 0.00 35.75 4.46
2963 7172 0.921347 CGCACTAAGATTTCGGTCCG 59.079 55.000 4.39 4.39 0.00 4.79
2964 7173 1.287425 GCACTAAGATTTCGGTCCGG 58.713 55.000 12.29 0.00 0.00 5.14
2965 7174 1.405121 GCACTAAGATTTCGGTCCGGT 60.405 52.381 12.29 0.00 0.00 5.28
2966 7175 2.537401 CACTAAGATTTCGGTCCGGTC 58.463 52.381 12.29 7.71 0.00 4.79
2967 7176 2.094390 CACTAAGATTTCGGTCCGGTCA 60.094 50.000 12.29 0.00 0.00 4.02
2968 7177 2.764572 ACTAAGATTTCGGTCCGGTCAT 59.235 45.455 12.29 0.69 0.00 3.06
2969 7178 2.311124 AAGATTTCGGTCCGGTCATC 57.689 50.000 12.29 10.35 0.00 2.92
2970 7179 0.102481 AGATTTCGGTCCGGTCATCG 59.898 55.000 12.29 0.00 38.88 3.84
2996 7205 7.931578 TTCTGACCGAACATTTAATAATGGT 57.068 32.000 0.00 0.00 44.28 3.55
2998 7207 8.657074 TCTGACCGAACATTTAATAATGGTAG 57.343 34.615 0.00 0.00 41.70 3.18
3005 7214 8.770828 CGAACATTTAATAATGGTAGGAATCGT 58.229 33.333 0.00 0.00 41.70 3.73
3008 7217 8.349983 ACATTTAATAATGGTAGGAATCGTTGC 58.650 33.333 0.00 0.00 44.42 4.17
3009 7218 7.867305 TTTAATAATGGTAGGAATCGTTGCA 57.133 32.000 0.00 0.00 0.00 4.08
3010 7219 5.751243 AATAATGGTAGGAATCGTTGCAC 57.249 39.130 0.00 0.00 0.00 4.57
3011 7220 2.779755 ATGGTAGGAATCGTTGCACA 57.220 45.000 0.00 0.00 0.00 4.57
3012 7221 1.803334 TGGTAGGAATCGTTGCACAC 58.197 50.000 0.00 0.00 0.00 3.82
3013 7222 1.346395 TGGTAGGAATCGTTGCACACT 59.654 47.619 0.00 0.00 0.00 3.55
3014 7223 2.224426 TGGTAGGAATCGTTGCACACTT 60.224 45.455 0.00 0.00 0.00 3.16
3015 7224 2.159627 GGTAGGAATCGTTGCACACTTG 59.840 50.000 0.00 0.00 0.00 3.16
3032 7241 3.654201 GCACTTGCACACCGATCA 58.346 55.556 0.00 0.00 41.59 2.92
3033 7242 1.499056 GCACTTGCACACCGATCAG 59.501 57.895 0.00 0.00 41.59 2.90
3034 7243 1.499056 CACTTGCACACCGATCAGC 59.501 57.895 0.00 0.00 0.00 4.26
3035 7244 1.672356 ACTTGCACACCGATCAGCC 60.672 57.895 0.00 0.00 0.00 4.85
3036 7245 2.359850 TTGCACACCGATCAGCCC 60.360 61.111 0.00 0.00 0.00 5.19
3037 7246 2.809861 CTTGCACACCGATCAGCCCT 62.810 60.000 0.00 0.00 0.00 5.19
3038 7247 2.821366 GCACACCGATCAGCCCTG 60.821 66.667 0.00 0.00 0.00 4.45
3039 7248 2.981302 CACACCGATCAGCCCTGA 59.019 61.111 0.00 0.00 44.59 3.86
3040 7249 1.296392 CACACCGATCAGCCCTGAA 59.704 57.895 1.62 0.00 43.58 3.02
3041 7250 1.021390 CACACCGATCAGCCCTGAAC 61.021 60.000 1.62 0.00 43.58 3.18
3042 7251 1.296392 CACCGATCAGCCCTGAACA 59.704 57.895 1.62 0.00 43.58 3.18
3043 7252 0.107508 CACCGATCAGCCCTGAACAT 60.108 55.000 1.62 0.00 43.58 2.71
3044 7253 0.620556 ACCGATCAGCCCTGAACATT 59.379 50.000 1.62 0.00 43.58 2.71
3045 7254 1.004745 ACCGATCAGCCCTGAACATTT 59.995 47.619 1.62 0.00 43.58 2.32
3046 7255 2.238646 ACCGATCAGCCCTGAACATTTA 59.761 45.455 1.62 0.00 43.58 1.40
3047 7256 3.278574 CCGATCAGCCCTGAACATTTAA 58.721 45.455 1.62 0.00 43.58 1.52
3048 7257 3.885297 CCGATCAGCCCTGAACATTTAAT 59.115 43.478 1.62 0.00 43.58 1.40
3049 7258 5.063204 CCGATCAGCCCTGAACATTTAATA 58.937 41.667 1.62 0.00 43.58 0.98
3050 7259 5.530915 CCGATCAGCCCTGAACATTTAATAA 59.469 40.000 1.62 0.00 43.58 1.40
3051 7260 6.207417 CCGATCAGCCCTGAACATTTAATAAT 59.793 38.462 1.62 0.00 43.58 1.28
3052 7261 7.080099 CGATCAGCCCTGAACATTTAATAATG 58.920 38.462 1.62 0.00 43.58 1.90
3053 7262 6.713762 TCAGCCCTGAACATTTAATAATGG 57.286 37.500 0.00 0.00 39.02 3.16
3054 7263 5.068987 TCAGCCCTGAACATTTAATAATGGC 59.931 40.000 0.00 0.00 39.02 4.40
3055 7264 4.961730 AGCCCTGAACATTTAATAATGGCA 59.038 37.500 0.00 0.00 44.42 4.92
3056 7265 5.069516 AGCCCTGAACATTTAATAATGGCAG 59.930 40.000 0.00 12.25 44.42 4.85
3061 7270 8.807667 CTGAACATTTAATAATGGCAGGAATC 57.192 34.615 0.00 0.00 44.42 2.52
3062 7271 7.424803 TGAACATTTAATAATGGCAGGAATCG 58.575 34.615 0.00 0.00 44.42 3.34
3063 7272 5.772521 ACATTTAATAATGGCAGGAATCGC 58.227 37.500 0.00 0.00 44.42 4.58
3064 7273 5.536161 ACATTTAATAATGGCAGGAATCGCT 59.464 36.000 0.00 0.00 44.42 4.93
3065 7274 5.437289 TTTAATAATGGCAGGAATCGCTG 57.563 39.130 0.00 0.00 0.00 5.18
3066 7275 1.242076 ATAATGGCAGGAATCGCTGC 58.758 50.000 13.05 13.05 45.04 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.449588 CGCTCTTACATTAGTTTACGGAGGA 60.450 44.000 0.00 0.00 0.00 3.71
44 45 8.385789 TCTAAACGCTCTTACATTAGTTTACG 57.614 34.615 0.00 0.00 34.29 3.18
84 85 6.114089 TCAGAGCGTTTAGATCACTACTACT 58.886 40.000 0.00 0.00 37.82 2.57
86 87 8.850007 ATATCAGAGCGTTTAGATCACTACTA 57.150 34.615 0.00 0.00 37.82 1.82
87 88 7.753309 ATATCAGAGCGTTTAGATCACTACT 57.247 36.000 0.00 0.00 37.82 2.57
88 89 8.076781 TCAATATCAGAGCGTTTAGATCACTAC 58.923 37.037 0.00 0.00 37.82 2.73
89 90 8.166422 TCAATATCAGAGCGTTTAGATCACTA 57.834 34.615 0.00 0.00 37.82 2.74
90 91 7.043961 TCAATATCAGAGCGTTTAGATCACT 57.956 36.000 0.00 0.00 37.82 3.41
91 92 7.881643 ATCAATATCAGAGCGTTTAGATCAC 57.118 36.000 0.00 0.00 37.82 3.06
195 196 0.179081 GGAAGGGATACGTCAGTGGC 60.179 60.000 0.00 0.00 37.60 5.01
243 244 2.589798 TTTATACTTCCCGAGGTGCG 57.410 50.000 0.00 0.00 40.47 5.34
336 337 0.667184 GTTTTGCTGACCGGGCAATG 60.667 55.000 13.37 0.28 46.81 2.82
471 519 4.336713 GTCTCTACAAGAAATTCCATGGGC 59.663 45.833 13.02 0.00 35.21 5.36
738 848 3.004752 ACCGCCTTAGCTGATTCAAAT 57.995 42.857 0.00 0.00 36.60 2.32
751 877 1.073284 ACACCTCAATACAACCGCCTT 59.927 47.619 0.00 0.00 0.00 4.35
821 947 0.248825 GCATGCCAACGTGTGACAAA 60.249 50.000 6.36 0.00 35.09 2.83
866 1004 5.919141 CGCAACTCCCTGTACTTATATACAC 59.081 44.000 0.00 0.00 31.72 2.90
876 1018 0.108756 GTCCTCGCAACTCCCTGTAC 60.109 60.000 0.00 0.00 0.00 2.90
989 1152 1.217882 GATCGCCATGGACCTTAACG 58.782 55.000 18.40 7.71 0.00 3.18
1053 1223 3.889134 CTGAGCCACCGCAGCTGAA 62.889 63.158 20.43 0.00 41.75 3.02
1125 1295 1.883678 TGATCTTGGCCATCTCCTCA 58.116 50.000 6.09 2.91 0.00 3.86
1176 1346 1.084370 CGTGGAAATGGAGACGGAGC 61.084 60.000 0.00 0.00 0.00 4.70
1275 1468 5.953205 GCAATTTAATTTACGTTGCATGCAG 59.047 36.000 21.50 13.01 43.33 4.41
1728 1936 1.001269 TGTCCAGAGACGGGTCGAT 60.001 57.895 0.00 0.00 46.74 3.59
1863 2071 3.003763 GAGACCCCTCCGCTTGGT 61.004 66.667 0.00 0.00 33.30 3.67
1976 2184 3.055891 TCTTGATCATGGACTCGCTGAAA 60.056 43.478 8.60 0.00 0.00 2.69
2057 2265 8.579682 AAAGAATGAACAAACACTAATTGAGC 57.420 30.769 0.00 0.00 0.00 4.26
2098 2306 3.454719 TCCACACAACCATCATCCAAT 57.545 42.857 0.00 0.00 0.00 3.16
2101 2309 2.795329 AGTTCCACACAACCATCATCC 58.205 47.619 0.00 0.00 0.00 3.51
2149 2357 2.123589 TCTGAACCAAACACCTCCTCA 58.876 47.619 0.00 0.00 0.00 3.86
2150 2358 2.930826 TCTGAACCAAACACCTCCTC 57.069 50.000 0.00 0.00 0.00 3.71
2151 2359 2.509964 ACTTCTGAACCAAACACCTCCT 59.490 45.455 0.00 0.00 0.00 3.69
2153 2361 2.879026 GGACTTCTGAACCAAACACCTC 59.121 50.000 0.00 0.00 0.00 3.85
2154 2362 2.509964 AGGACTTCTGAACCAAACACCT 59.490 45.455 0.58 0.00 0.00 4.00
2155 2363 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
2157 2365 3.971305 TCCTAGGACTTCTGAACCAAACA 59.029 43.478 7.62 0.00 0.00 2.83
2158 2366 4.316645 GTCCTAGGACTTCTGAACCAAAC 58.683 47.826 31.12 3.26 41.57 2.93
2214 2422 8.048514 GGGACTAGAAAAAGACTCTACTAGAGA 58.951 40.741 18.41 0.00 45.07 3.10
2215 2423 8.050930 AGGGACTAGAAAAAGACTCTACTAGAG 58.949 40.741 11.06 11.06 42.94 2.43
2216 2424 7.931046 AGGGACTAGAAAAAGACTCTACTAGA 58.069 38.462 0.00 0.00 36.02 2.43
2217 2425 8.050930 AGAGGGACTAGAAAAAGACTCTACTAG 58.949 40.741 0.00 0.00 41.55 2.57
2218 2426 7.931046 AGAGGGACTAGAAAAAGACTCTACTA 58.069 38.462 0.00 0.00 41.55 1.82
2219 2427 6.796648 AGAGGGACTAGAAAAAGACTCTACT 58.203 40.000 0.00 0.00 41.55 2.57
2232 2440 5.016459 AGGGACTTTTTCTAGAGGGACTAGA 59.984 44.000 0.00 0.00 46.27 2.43
2233 2441 5.274015 AGGGACTTTTTCTAGAGGGACTAG 58.726 45.833 0.00 0.00 42.89 2.57
2234 2442 5.270794 GAGGGACTTTTTCTAGAGGGACTA 58.729 45.833 0.00 0.00 37.80 2.59
2235 2443 4.098155 GAGGGACTTTTTCTAGAGGGACT 58.902 47.826 0.00 0.00 41.55 3.85
2236 2444 3.198200 GGAGGGACTTTTTCTAGAGGGAC 59.802 52.174 0.00 0.00 41.55 4.46
2237 2445 3.451890 GGAGGGACTTTTTCTAGAGGGA 58.548 50.000 0.00 0.00 41.55 4.20
2238 2446 2.506231 GGGAGGGACTTTTTCTAGAGGG 59.494 54.545 0.00 0.00 41.55 4.30
2239 2447 2.168728 CGGGAGGGACTTTTTCTAGAGG 59.831 54.545 0.00 0.00 41.55 3.69
2240 2448 2.832733 ACGGGAGGGACTTTTTCTAGAG 59.167 50.000 0.00 0.00 41.55 2.43
2241 2449 2.898662 ACGGGAGGGACTTTTTCTAGA 58.101 47.619 0.00 0.00 41.55 2.43
2242 2450 3.697619 AACGGGAGGGACTTTTTCTAG 57.302 47.619 0.00 0.00 41.55 2.43
2243 2451 3.497227 CCAAACGGGAGGGACTTTTTCTA 60.497 47.826 0.00 0.00 41.55 2.10
2244 2452 2.583143 CAAACGGGAGGGACTTTTTCT 58.417 47.619 0.00 0.00 41.55 2.52
2245 2453 1.611977 CCAAACGGGAGGGACTTTTTC 59.388 52.381 0.00 0.00 41.55 2.29
2246 2454 1.063492 ACCAAACGGGAGGGACTTTTT 60.063 47.619 0.00 0.00 41.55 1.94
2247 2455 0.554305 ACCAAACGGGAGGGACTTTT 59.446 50.000 0.00 0.00 41.55 2.27
2248 2456 0.554305 AACCAAACGGGAGGGACTTT 59.446 50.000 0.00 0.00 41.55 2.66
2249 2457 0.109913 GAACCAAACGGGAGGGACTT 59.890 55.000 0.00 0.00 41.55 3.01
2251 2459 1.303074 GGAACCAAACGGGAGGGAC 60.303 63.158 0.00 0.00 41.15 4.46
2252 2460 1.462627 AGGAACCAAACGGGAGGGA 60.463 57.895 0.00 0.00 41.15 4.20
2253 2461 1.303317 CAGGAACCAAACGGGAGGG 60.303 63.158 0.00 0.00 41.15 4.30
2254 2462 1.303317 CCAGGAACCAAACGGGAGG 60.303 63.158 0.00 0.00 41.15 4.30
2255 2463 1.303317 CCCAGGAACCAAACGGGAG 60.303 63.158 0.00 0.00 39.44 4.30
2256 2464 2.836187 CCCCAGGAACCAAACGGGA 61.836 63.158 0.00 0.00 39.44 5.14
2257 2465 2.150014 ATCCCCAGGAACCAAACGGG 62.150 60.000 0.00 0.00 36.60 5.28
2258 2466 0.251608 AATCCCCAGGAACCAAACGG 60.252 55.000 0.00 0.00 34.34 4.44
2259 2467 1.627864 AAATCCCCAGGAACCAAACG 58.372 50.000 0.00 0.00 34.34 3.60
2277 2485 7.937394 CCAGAGACTAGAAAAAGTCCCTAAAAA 59.063 37.037 0.00 0.00 45.86 1.94
2278 2486 7.450903 CCAGAGACTAGAAAAAGTCCCTAAAA 58.549 38.462 0.00 0.00 45.86 1.52
2279 2487 6.013639 CCCAGAGACTAGAAAAAGTCCCTAAA 60.014 42.308 0.00 0.00 45.86 1.85
2280 2488 5.484290 CCCAGAGACTAGAAAAAGTCCCTAA 59.516 44.000 0.00 0.00 45.86 2.69
2281 2489 5.024118 CCCAGAGACTAGAAAAAGTCCCTA 58.976 45.833 0.00 0.00 45.86 3.53
2282 2490 3.841255 CCCAGAGACTAGAAAAAGTCCCT 59.159 47.826 0.00 0.00 45.86 4.20
2283 2491 3.838903 TCCCAGAGACTAGAAAAAGTCCC 59.161 47.826 0.00 0.00 45.86 4.46
2284 2492 4.823157 GTCCCAGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
2304 2512 6.695713 GTGTTTGGTTCATGGACTTTTTAGTC 59.304 38.462 3.62 0.00 38.04 2.59
2305 2513 6.406512 GGTGTTTGGTTCATGGACTTTTTAGT 60.407 38.462 3.62 0.00 0.00 2.24
2306 2514 5.983118 GGTGTTTGGTTCATGGACTTTTTAG 59.017 40.000 3.62 0.00 0.00 1.85
2307 2515 5.163395 GGGTGTTTGGTTCATGGACTTTTTA 60.163 40.000 3.62 0.00 0.00 1.52
2308 2516 4.383661 GGGTGTTTGGTTCATGGACTTTTT 60.384 41.667 3.62 0.00 0.00 1.94
2309 2517 3.133901 GGGTGTTTGGTTCATGGACTTTT 59.866 43.478 3.62 0.00 0.00 2.27
2310 2518 2.698274 GGGTGTTTGGTTCATGGACTTT 59.302 45.455 3.62 0.00 0.00 2.66
2311 2519 2.316108 GGGTGTTTGGTTCATGGACTT 58.684 47.619 3.62 0.00 0.00 3.01
2312 2520 1.480498 GGGGTGTTTGGTTCATGGACT 60.480 52.381 3.62 0.00 0.00 3.85
2313 2521 0.966179 GGGGTGTTTGGTTCATGGAC 59.034 55.000 0.00 0.00 0.00 4.02
2314 2522 0.178947 GGGGGTGTTTGGTTCATGGA 60.179 55.000 0.00 0.00 0.00 3.41
2315 2523 0.178935 AGGGGGTGTTTGGTTCATGG 60.179 55.000 0.00 0.00 0.00 3.66
2316 2524 0.968405 CAGGGGGTGTTTGGTTCATG 59.032 55.000 0.00 0.00 0.00 3.07
2317 2525 0.856982 TCAGGGGGTGTTTGGTTCAT 59.143 50.000 0.00 0.00 0.00 2.57
2318 2526 0.184933 CTCAGGGGGTGTTTGGTTCA 59.815 55.000 0.00 0.00 0.00 3.18
2319 2527 0.185175 ACTCAGGGGGTGTTTGGTTC 59.815 55.000 0.00 0.00 0.00 3.62
2320 2528 1.525175 TACTCAGGGGGTGTTTGGTT 58.475 50.000 0.00 0.00 0.00 3.67
2321 2529 1.525175 TTACTCAGGGGGTGTTTGGT 58.475 50.000 0.00 0.00 0.00 3.67
2322 2530 2.668144 TTTACTCAGGGGGTGTTTGG 57.332 50.000 0.00 0.00 0.00 3.28
2323 2531 4.586841 TGATTTTTACTCAGGGGGTGTTTG 59.413 41.667 0.00 0.00 0.00 2.93
2324 2532 4.810345 TGATTTTTACTCAGGGGGTGTTT 58.190 39.130 0.00 0.00 0.00 2.83
2325 2533 4.463050 TGATTTTTACTCAGGGGGTGTT 57.537 40.909 0.00 0.00 0.00 3.32
2326 2534 4.675063 ATGATTTTTACTCAGGGGGTGT 57.325 40.909 0.00 0.00 0.00 4.16
2327 2535 7.660030 ATAAATGATTTTTACTCAGGGGGTG 57.340 36.000 0.00 0.00 0.00 4.61
2328 2536 7.898636 TGAATAAATGATTTTTACTCAGGGGGT 59.101 33.333 0.00 0.00 0.00 4.95
2329 2537 8.197439 GTGAATAAATGATTTTTACTCAGGGGG 58.803 37.037 0.00 0.00 0.00 5.40
2330 2538 7.915397 CGTGAATAAATGATTTTTACTCAGGGG 59.085 37.037 0.00 0.00 0.00 4.79
2331 2539 8.673711 TCGTGAATAAATGATTTTTACTCAGGG 58.326 33.333 0.00 0.00 0.00 4.45
2356 2564 6.116680 CTTTGGAGCAGATCATTACAGTTC 57.883 41.667 0.00 0.00 0.00 3.01
2470 2680 3.805422 GTGGTTGTCTCGTGTAAACATCA 59.195 43.478 7.13 0.00 0.00 3.07
2578 6775 5.764686 TGGAGATATGCACACAACAATATCC 59.235 40.000 0.00 0.00 30.97 2.59
2581 6778 8.785946 CAATATGGAGATATGCACACAACAATA 58.214 33.333 0.00 0.00 0.00 1.90
2582 6779 7.503230 TCAATATGGAGATATGCACACAACAAT 59.497 33.333 0.00 0.00 0.00 2.71
2583 6780 6.827762 TCAATATGGAGATATGCACACAACAA 59.172 34.615 0.00 0.00 0.00 2.83
2590 6787 7.559486 TGACCTATCAATATGGAGATATGCAC 58.441 38.462 0.00 0.00 0.00 4.57
2612 6810 7.173390 AGAGTTGCACCTTTTACTTTCTATGAC 59.827 37.037 0.00 0.00 0.00 3.06
2625 6823 2.427095 GTTGGTTGAGAGTTGCACCTTT 59.573 45.455 0.00 0.00 0.00 3.11
2694 6893 1.561643 TCTTCCTCGGCTCAACTCAT 58.438 50.000 0.00 0.00 0.00 2.90
2695 6894 1.338107 TTCTTCCTCGGCTCAACTCA 58.662 50.000 0.00 0.00 0.00 3.41
2705 6904 0.250727 TTGCACCCCTTTCTTCCTCG 60.251 55.000 0.00 0.00 0.00 4.63
2710 6909 3.069586 GCTTTAGTTTGCACCCCTTTCTT 59.930 43.478 0.00 0.00 0.00 2.52
2715 6914 2.290960 CCTAGCTTTAGTTTGCACCCCT 60.291 50.000 0.00 0.00 0.00 4.79
2734 6943 4.478686 AGATAGGATTTTACCTGCAACCCT 59.521 41.667 0.00 0.00 40.81 4.34
2736 6945 6.262496 GGTTAGATAGGATTTTACCTGCAACC 59.738 42.308 0.00 0.00 40.81 3.77
2743 6952 8.215736 TGCTAAAGGGTTAGATAGGATTTTACC 58.784 37.037 0.00 0.00 39.36 2.85
2759 6968 1.549170 CTCGTACTGGTGCTAAAGGGT 59.451 52.381 0.00 0.00 0.00 4.34
2766 6975 2.603473 TGGGCTCGTACTGGTGCT 60.603 61.111 0.00 0.00 0.00 4.40
2771 6980 1.446792 CACAGCTGGGCTCGTACTG 60.447 63.158 19.93 0.00 36.40 2.74
2785 6994 0.392193 ATGAAGGAAGAGGCGCACAG 60.392 55.000 10.83 0.00 0.00 3.66
2786 6995 0.674581 CATGAAGGAAGAGGCGCACA 60.675 55.000 10.83 0.00 0.00 4.57
2787 6996 0.674895 ACATGAAGGAAGAGGCGCAC 60.675 55.000 10.83 2.06 0.00 5.34
2788 6997 0.674581 CACATGAAGGAAGAGGCGCA 60.675 55.000 10.83 0.00 0.00 6.09
2789 6998 1.372087 CCACATGAAGGAAGAGGCGC 61.372 60.000 0.00 0.00 0.00 6.53
2790 6999 0.036010 ACCACATGAAGGAAGAGGCG 60.036 55.000 14.40 0.00 0.00 5.52
2791 7000 1.457346 CACCACATGAAGGAAGAGGC 58.543 55.000 14.40 0.00 0.00 4.70
2792 7001 1.630369 TCCACCACATGAAGGAAGAGG 59.370 52.381 14.40 10.36 0.00 3.69
2793 7002 3.641434 ATCCACCACATGAAGGAAGAG 57.359 47.619 14.40 3.42 33.17 2.85
2794 7003 4.626287 GCTAATCCACCACATGAAGGAAGA 60.626 45.833 14.40 10.54 33.17 2.87
2795 7004 3.629398 GCTAATCCACCACATGAAGGAAG 59.371 47.826 14.40 7.32 33.17 3.46
2796 7005 3.010027 TGCTAATCCACCACATGAAGGAA 59.990 43.478 14.40 2.24 33.17 3.36
2797 7006 2.575735 TGCTAATCCACCACATGAAGGA 59.424 45.455 14.40 8.80 34.12 3.36
2798 7007 3.003394 TGCTAATCCACCACATGAAGG 57.997 47.619 0.00 3.24 0.00 3.46
2799 7008 3.317149 CCATGCTAATCCACCACATGAAG 59.683 47.826 0.00 0.00 40.39 3.02
2800 7009 3.289836 CCATGCTAATCCACCACATGAA 58.710 45.455 0.00 0.00 40.39 2.57
2801 7010 2.934887 CCATGCTAATCCACCACATGA 58.065 47.619 0.00 0.00 40.39 3.07
2802 7011 1.338973 GCCATGCTAATCCACCACATG 59.661 52.381 0.00 0.00 38.24 3.21
2803 7012 1.216175 AGCCATGCTAATCCACCACAT 59.784 47.619 0.00 0.00 36.99 3.21
2804 7013 0.625316 AGCCATGCTAATCCACCACA 59.375 50.000 0.00 0.00 36.99 4.17
2805 7014 2.498167 CTAGCCATGCTAATCCACCAC 58.502 52.381 0.00 0.00 40.82 4.16
2806 7015 1.421268 CCTAGCCATGCTAATCCACCA 59.579 52.381 0.00 0.00 40.82 4.17
2807 7016 1.271597 CCCTAGCCATGCTAATCCACC 60.272 57.143 0.00 0.00 40.82 4.61
2808 7017 1.884067 GCCCTAGCCATGCTAATCCAC 60.884 57.143 0.00 0.00 40.82 4.02
2809 7018 0.401738 GCCCTAGCCATGCTAATCCA 59.598 55.000 0.00 0.00 40.82 3.41
2810 7019 0.695347 AGCCCTAGCCATGCTAATCC 59.305 55.000 0.00 0.00 40.82 3.01
2811 7020 1.612726 CCAGCCCTAGCCATGCTAATC 60.613 57.143 0.00 0.00 40.82 1.75
2812 7021 0.403271 CCAGCCCTAGCCATGCTAAT 59.597 55.000 0.00 0.00 40.82 1.73
2813 7022 1.708993 CCCAGCCCTAGCCATGCTAA 61.709 60.000 0.00 0.00 40.82 3.09
2814 7023 2.149383 CCCAGCCCTAGCCATGCTA 61.149 63.158 0.00 0.00 40.44 3.49
2815 7024 3.496160 CCCAGCCCTAGCCATGCT 61.496 66.667 0.00 0.00 43.41 3.79
2817 7026 4.943252 CGCCCAGCCCTAGCCATG 62.943 72.222 0.00 0.00 41.25 3.66
2820 7029 4.858680 GAACGCCCAGCCCTAGCC 62.859 72.222 0.00 0.00 41.25 3.93
2822 7031 4.530857 CCGAACGCCCAGCCCTAG 62.531 72.222 0.00 0.00 0.00 3.02
2839 7048 4.747529 CGGACGGTTCGGGGGAAC 62.748 72.222 0.00 0.00 0.00 3.62
2856 7065 2.726822 AAAGACCGAAGCACCGACCC 62.727 60.000 0.00 0.00 0.00 4.46
2857 7066 0.037975 TAAAGACCGAAGCACCGACC 60.038 55.000 0.00 0.00 0.00 4.79
2858 7067 1.787012 TTAAAGACCGAAGCACCGAC 58.213 50.000 0.00 0.00 0.00 4.79
2859 7068 2.529780 TTTAAAGACCGAAGCACCGA 57.470 45.000 0.00 0.00 0.00 4.69
2860 7069 3.612472 TTTTTAAAGACCGAAGCACCG 57.388 42.857 0.00 0.00 0.00 4.94
2877 7086 7.841915 ACGATTTTGGACAACTGAAATTTTT 57.158 28.000 0.00 0.00 0.00 1.94
2878 7087 7.547370 TCAACGATTTTGGACAACTGAAATTTT 59.453 29.630 0.00 0.00 0.00 1.82
2879 7088 7.010091 GTCAACGATTTTGGACAACTGAAATTT 59.990 33.333 0.00 0.00 0.00 1.82
2880 7089 6.475402 GTCAACGATTTTGGACAACTGAAATT 59.525 34.615 0.00 0.00 0.00 1.82
2881 7090 5.977129 GTCAACGATTTTGGACAACTGAAAT 59.023 36.000 0.00 0.00 0.00 2.17
2882 7091 5.336744 GTCAACGATTTTGGACAACTGAAA 58.663 37.500 0.00 0.00 0.00 2.69
2883 7092 4.201970 GGTCAACGATTTTGGACAACTGAA 60.202 41.667 0.00 0.00 32.00 3.02
2884 7093 3.314080 GGTCAACGATTTTGGACAACTGA 59.686 43.478 0.00 0.00 32.00 3.41
2885 7094 3.628017 GGTCAACGATTTTGGACAACTG 58.372 45.455 0.00 0.00 32.00 3.16
2886 7095 3.982576 GGTCAACGATTTTGGACAACT 57.017 42.857 0.00 0.00 32.00 3.16
2905 7114 0.108992 TCTTTCCGTTGACCGATCGG 60.109 55.000 32.20 32.20 44.76 4.18
2906 7115 1.269166 CTCTTTCCGTTGACCGATCG 58.731 55.000 8.51 8.51 39.56 3.69
2907 7116 1.000145 GCTCTTTCCGTTGACCGATC 59.000 55.000 0.00 0.00 39.56 3.69
2908 7117 0.320374 TGCTCTTTCCGTTGACCGAT 59.680 50.000 0.00 0.00 39.56 4.18
2909 7118 0.599204 GTGCTCTTTCCGTTGACCGA 60.599 55.000 0.00 0.00 39.56 4.69
2910 7119 0.878523 TGTGCTCTTTCCGTTGACCG 60.879 55.000 0.00 0.00 0.00 4.79
2911 7120 1.305201 TTGTGCTCTTTCCGTTGACC 58.695 50.000 0.00 0.00 0.00 4.02
2912 7121 2.540973 GGTTTGTGCTCTTTCCGTTGAC 60.541 50.000 0.00 0.00 0.00 3.18
2913 7122 1.673920 GGTTTGTGCTCTTTCCGTTGA 59.326 47.619 0.00 0.00 0.00 3.18
2914 7123 1.596954 CGGTTTGTGCTCTTTCCGTTG 60.597 52.381 0.00 0.00 34.38 4.10
2915 7124 0.661020 CGGTTTGTGCTCTTTCCGTT 59.339 50.000 0.00 0.00 34.38 4.44
2916 7125 0.179067 TCGGTTTGTGCTCTTTCCGT 60.179 50.000 12.63 0.00 39.14 4.69
2917 7126 1.135972 CATCGGTTTGTGCTCTTTCCG 60.136 52.381 0.00 0.00 39.40 4.30
2918 7127 2.151202 TCATCGGTTTGTGCTCTTTCC 58.849 47.619 0.00 0.00 0.00 3.13
2919 7128 3.896648 TTCATCGGTTTGTGCTCTTTC 57.103 42.857 0.00 0.00 0.00 2.62
2920 7129 3.820467 TCATTCATCGGTTTGTGCTCTTT 59.180 39.130 0.00 0.00 0.00 2.52
2921 7130 3.189287 GTCATTCATCGGTTTGTGCTCTT 59.811 43.478 0.00 0.00 0.00 2.85
2922 7131 2.744202 GTCATTCATCGGTTTGTGCTCT 59.256 45.455 0.00 0.00 0.00 4.09
2923 7132 2.159517 GGTCATTCATCGGTTTGTGCTC 60.160 50.000 0.00 0.00 0.00 4.26
2924 7133 1.812571 GGTCATTCATCGGTTTGTGCT 59.187 47.619 0.00 0.00 0.00 4.40
2925 7134 1.465689 CGGTCATTCATCGGTTTGTGC 60.466 52.381 0.00 0.00 0.00 4.57
2926 7135 1.465689 GCGGTCATTCATCGGTTTGTG 60.466 52.381 0.00 0.00 0.00 3.33
2927 7136 0.802494 GCGGTCATTCATCGGTTTGT 59.198 50.000 0.00 0.00 0.00 2.83
2928 7137 0.801872 TGCGGTCATTCATCGGTTTG 59.198 50.000 0.00 0.00 0.00 2.93
2929 7138 0.802494 GTGCGGTCATTCATCGGTTT 59.198 50.000 0.00 0.00 0.00 3.27
2930 7139 0.036388 AGTGCGGTCATTCATCGGTT 60.036 50.000 0.00 0.00 0.00 4.44
2931 7140 0.821517 TAGTGCGGTCATTCATCGGT 59.178 50.000 0.00 0.00 0.00 4.69
2932 7141 1.860950 CTTAGTGCGGTCATTCATCGG 59.139 52.381 0.00 0.00 0.00 4.18
2933 7142 2.809446 TCTTAGTGCGGTCATTCATCG 58.191 47.619 0.00 0.00 0.00 3.84
2934 7143 5.557136 CGAAATCTTAGTGCGGTCATTCATC 60.557 44.000 0.00 0.00 0.00 2.92
2935 7144 4.271049 CGAAATCTTAGTGCGGTCATTCAT 59.729 41.667 0.00 0.00 0.00 2.57
2936 7145 3.616821 CGAAATCTTAGTGCGGTCATTCA 59.383 43.478 0.00 0.00 0.00 2.57
2937 7146 3.001330 CCGAAATCTTAGTGCGGTCATTC 59.999 47.826 0.00 0.00 37.35 2.67
2938 7147 2.936498 CCGAAATCTTAGTGCGGTCATT 59.064 45.455 0.00 0.00 37.35 2.57
2939 7148 2.550978 CCGAAATCTTAGTGCGGTCAT 58.449 47.619 0.00 0.00 37.35 3.06
2940 7149 2.004583 CCGAAATCTTAGTGCGGTCA 57.995 50.000 0.00 0.00 37.35 4.02
2943 7152 1.287425 GGACCGAAATCTTAGTGCGG 58.713 55.000 0.00 0.00 46.83 5.69
2944 7153 0.921347 CGGACCGAAATCTTAGTGCG 59.079 55.000 8.64 0.00 37.71 5.34
2945 7154 1.287425 CCGGACCGAAATCTTAGTGC 58.713 55.000 17.49 0.00 0.00 4.40
2946 7155 2.094390 TGACCGGACCGAAATCTTAGTG 60.094 50.000 17.49 0.00 0.00 2.74
2947 7156 2.173519 TGACCGGACCGAAATCTTAGT 58.826 47.619 17.49 0.95 0.00 2.24
2948 7157 2.953466 TGACCGGACCGAAATCTTAG 57.047 50.000 17.49 0.00 0.00 2.18
2949 7158 2.223641 CGATGACCGGACCGAAATCTTA 60.224 50.000 17.49 0.00 33.91 2.10
2950 7159 1.470979 CGATGACCGGACCGAAATCTT 60.471 52.381 17.49 8.06 33.91 2.40
2951 7160 0.102481 CGATGACCGGACCGAAATCT 59.898 55.000 17.49 0.00 33.91 2.40
2952 7161 2.589890 CGATGACCGGACCGAAATC 58.410 57.895 17.49 13.54 33.91 2.17
2953 7162 4.827481 CGATGACCGGACCGAAAT 57.173 55.556 17.49 5.49 33.91 2.17
2972 7181 7.931578 ACCATTATTAAATGTTCGGTCAGAA 57.068 32.000 0.00 0.00 40.84 3.02
2973 7182 7.713507 CCTACCATTATTAAATGTTCGGTCAGA 59.286 37.037 0.00 0.00 40.84 3.27
2974 7183 7.713507 TCCTACCATTATTAAATGTTCGGTCAG 59.286 37.037 0.00 0.00 40.84 3.51
2975 7184 7.566569 TCCTACCATTATTAAATGTTCGGTCA 58.433 34.615 0.00 0.00 40.84 4.02
2976 7185 8.441312 TTCCTACCATTATTAAATGTTCGGTC 57.559 34.615 0.00 0.00 40.84 4.79
2977 7186 8.990163 ATTCCTACCATTATTAAATGTTCGGT 57.010 30.769 0.00 0.00 40.84 4.69
2978 7187 8.227791 CGATTCCTACCATTATTAAATGTTCGG 58.772 37.037 0.00 0.00 40.84 4.30
2979 7188 8.770828 ACGATTCCTACCATTATTAAATGTTCG 58.229 33.333 0.00 0.00 40.84 3.95
2982 7191 8.349983 GCAACGATTCCTACCATTATTAAATGT 58.650 33.333 0.00 0.00 40.84 2.71
2983 7192 8.349245 TGCAACGATTCCTACCATTATTAAATG 58.651 33.333 0.00 0.00 41.90 2.32
2984 7193 8.349983 GTGCAACGATTCCTACCATTATTAAAT 58.650 33.333 0.00 0.00 0.00 1.40
2985 7194 7.337184 TGTGCAACGATTCCTACCATTATTAAA 59.663 33.333 0.00 0.00 42.39 1.52
2986 7195 6.824196 TGTGCAACGATTCCTACCATTATTAA 59.176 34.615 0.00 0.00 42.39 1.40
2987 7196 6.259167 GTGTGCAACGATTCCTACCATTATTA 59.741 38.462 0.00 0.00 42.39 0.98
2988 7197 5.065988 GTGTGCAACGATTCCTACCATTATT 59.934 40.000 0.00 0.00 42.39 1.40
2989 7198 4.574828 GTGTGCAACGATTCCTACCATTAT 59.425 41.667 0.00 0.00 42.39 1.28
2990 7199 3.936453 GTGTGCAACGATTCCTACCATTA 59.064 43.478 0.00 0.00 42.39 1.90
2991 7200 2.747446 GTGTGCAACGATTCCTACCATT 59.253 45.455 0.00 0.00 42.39 3.16
2992 7201 2.027192 AGTGTGCAACGATTCCTACCAT 60.027 45.455 0.00 0.00 42.39 3.55
2993 7202 1.346395 AGTGTGCAACGATTCCTACCA 59.654 47.619 0.00 0.00 42.39 3.25
2994 7203 2.094762 AGTGTGCAACGATTCCTACC 57.905 50.000 0.00 0.00 42.39 3.18
2995 7204 3.455619 CAAGTGTGCAACGATTCCTAC 57.544 47.619 0.00 0.00 42.39 3.18
3015 7224 1.499056 CTGATCGGTGTGCAAGTGC 59.501 57.895 0.00 0.00 42.50 4.40
3016 7225 1.499056 GCTGATCGGTGTGCAAGTG 59.501 57.895 2.89 0.00 0.00 3.16
3017 7226 1.672356 GGCTGATCGGTGTGCAAGT 60.672 57.895 2.89 0.00 0.00 3.16
3018 7227 2.401766 GGGCTGATCGGTGTGCAAG 61.402 63.158 2.89 0.00 0.00 4.01
3019 7228 2.359850 GGGCTGATCGGTGTGCAA 60.360 61.111 2.89 0.00 0.00 4.08
3020 7229 3.321648 AGGGCTGATCGGTGTGCA 61.322 61.111 2.89 0.00 0.00 4.57
3021 7230 2.803155 TTCAGGGCTGATCGGTGTGC 62.803 60.000 2.89 0.00 39.64 4.57
3022 7231 1.021390 GTTCAGGGCTGATCGGTGTG 61.021 60.000 2.89 0.00 39.64 3.82
3023 7232 1.296715 GTTCAGGGCTGATCGGTGT 59.703 57.895 2.89 0.00 39.64 4.16
3024 7233 0.107508 ATGTTCAGGGCTGATCGGTG 60.108 55.000 2.89 0.00 39.64 4.94
3025 7234 0.620556 AATGTTCAGGGCTGATCGGT 59.379 50.000 2.89 0.00 39.64 4.69
3026 7235 1.755179 AAATGTTCAGGGCTGATCGG 58.245 50.000 0.00 0.00 39.64 4.18
3027 7236 6.618287 TTATTAAATGTTCAGGGCTGATCG 57.382 37.500 0.00 0.00 39.64 3.69
3028 7237 7.373493 CCATTATTAAATGTTCAGGGCTGATC 58.627 38.462 0.00 0.00 40.84 2.92
3029 7238 6.239402 GCCATTATTAAATGTTCAGGGCTGAT 60.239 38.462 0.00 0.00 40.84 2.90
3030 7239 5.068987 GCCATTATTAAATGTTCAGGGCTGA 59.931 40.000 0.00 0.00 40.84 4.26
3031 7240 5.163426 TGCCATTATTAAATGTTCAGGGCTG 60.163 40.000 0.00 0.00 40.84 4.85
3032 7241 4.961730 TGCCATTATTAAATGTTCAGGGCT 59.038 37.500 0.00 0.00 40.84 5.19
3033 7242 5.275067 TGCCATTATTAAATGTTCAGGGC 57.725 39.130 0.00 0.00 40.84 5.19
3034 7243 5.846203 CCTGCCATTATTAAATGTTCAGGG 58.154 41.667 18.90 8.61 45.96 4.45
3036 7245 7.592533 CGATTCCTGCCATTATTAAATGTTCAG 59.407 37.037 9.06 9.06 40.84 3.02
3037 7246 7.424803 CGATTCCTGCCATTATTAAATGTTCA 58.575 34.615 0.00 0.00 40.84 3.18
3038 7247 6.363357 GCGATTCCTGCCATTATTAAATGTTC 59.637 38.462 0.00 0.00 40.84 3.18
3039 7248 6.040842 AGCGATTCCTGCCATTATTAAATGTT 59.959 34.615 0.00 0.00 40.84 2.71
3040 7249 5.536161 AGCGATTCCTGCCATTATTAAATGT 59.464 36.000 0.00 0.00 40.84 2.71
3041 7250 5.860182 CAGCGATTCCTGCCATTATTAAATG 59.140 40.000 0.00 0.00 41.90 2.32
3042 7251 6.017400 CAGCGATTCCTGCCATTATTAAAT 57.983 37.500 0.00 0.00 0.00 1.40
3043 7252 5.437289 CAGCGATTCCTGCCATTATTAAA 57.563 39.130 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.