Multiple sequence alignment - TraesCS7D01G194700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G194700 chr7D 100.000 6510 0 0 1 6510 151323159 151316650 0.000000e+00 12022.0
1 TraesCS7D01G194700 chr7A 87.983 4194 314 99 191 4280 150994597 150990490 0.000000e+00 4778.0
2 TraesCS7D01G194700 chr7A 93.910 821 48 2 4454 5273 150990427 150989608 0.000000e+00 1238.0
3 TraesCS7D01G194700 chr7A 87.267 966 64 23 5448 6386 150989500 150988567 0.000000e+00 1048.0
4 TraesCS7D01G194700 chr7A 91.542 201 14 1 4 201 150994757 150994557 2.310000e-69 274.0
5 TraesCS7D01G194700 chr7A 78.947 209 41 2 133 341 150994760 150994555 8.800000e-29 139.0
6 TraesCS7D01G194700 chr7A 85.507 138 12 4 5284 5415 150989638 150989503 3.170000e-28 137.0
7 TraesCS7D01G194700 chr7B 92.025 1768 82 28 1672 3396 113201626 113199875 0.000000e+00 2429.0
8 TraesCS7D01G194700 chr7B 91.315 1566 97 17 1 1534 113203298 113201740 0.000000e+00 2102.0
9 TraesCS7D01G194700 chr7B 95.270 888 37 4 3396 4280 113199784 113198899 0.000000e+00 1402.0
10 TraesCS7D01G194700 chr7B 89.816 923 77 8 4366 5273 113198902 113197982 0.000000e+00 1168.0
11 TraesCS7D01G194700 chr7B 86.969 1036 86 25 5475 6483 113197695 113196682 0.000000e+00 1120.0
12 TraesCS7D01G194700 chr5B 85.294 102 8 4 4269 4370 50469120 50469214 1.490000e-16 99.0
13 TraesCS7D01G194700 chr5A 89.286 56 5 1 4277 4332 30705202 30705148 1.170000e-07 69.4
14 TraesCS7D01G194700 chr2B 90.196 51 5 0 4276 4326 103190377 103190427 4.210000e-07 67.6
15 TraesCS7D01G194700 chr2D 92.857 42 3 0 4279 4320 33162777 33162736 1.960000e-05 62.1
16 TraesCS7D01G194700 chr2D 94.872 39 2 0 4279 4317 133768848 133768810 1.960000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G194700 chr7D 151316650 151323159 6509 True 12022.0 12022 100.000 1 6510 1 chr7D.!!$R1 6509
1 TraesCS7D01G194700 chr7A 150988567 150994760 6193 True 1269.0 4778 87.526 4 6386 6 chr7A.!!$R1 6382
2 TraesCS7D01G194700 chr7B 113196682 113203298 6616 True 1644.2 2429 91.079 1 6483 5 chr7B.!!$R1 6482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 808 0.251341 TTTGGAGGAGGGCAGCTTTC 60.251 55.000 0.00 0.0 0.00 2.62 F
790 813 1.075659 GGAGGGCAGCTTTCTGGTT 59.924 57.895 0.00 0.0 40.65 3.67 F
1311 1367 1.106285 CTCCCATTTGTGCTTAGGGC 58.894 55.000 0.00 0.0 39.42 5.19 F
1594 1685 1.115326 AGTCCTTTTGGGGCACTTGC 61.115 55.000 0.00 0.0 43.45 4.01 F
2286 2392 1.202675 ACCCATTGGCAAGCAACTTTG 60.203 47.619 5.96 0.0 33.59 2.77 F
2456 2564 2.158957 ACCTACAACATATGCTCCACCG 60.159 50.000 1.58 0.0 0.00 4.94 F
4001 4259 1.339610 TGGAAGTTTGGATTGTTGGCG 59.660 47.619 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2257 2363 0.039035 TGCCAATGGGTAACAGGGTC 59.961 55.000 0.00 0.0 36.17 4.46 R
2266 2372 1.130777 AAAGTTGCTTGCCAATGGGT 58.869 45.000 0.00 0.0 35.55 4.51 R
2456 2564 2.039084 AGTGATGTTCCTGTTGAGGTCC 59.961 50.000 0.00 0.0 40.76 4.46 R
2578 2695 3.424703 TCCCATGGCTTCAAGAGAAAAG 58.575 45.455 6.09 0.0 32.35 2.27 R
3990 4248 1.947456 GGGAGAATACGCCAACAATCC 59.053 52.381 0.00 0.0 37.72 3.01 R
4055 4313 2.293399 GCCCGATTCACAACTTCTTGTT 59.707 45.455 0.00 0.0 38.66 2.83 R
5700 6110 0.874175 GTTCCCACTTTTTGCGTGCC 60.874 55.000 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.249407 GAGGAAGACGAGGTGAGTGT 58.751 55.000 0.00 0.00 0.00 3.55
37 38 1.808945 GGTGAGTGTTGAGCCATCAAG 59.191 52.381 0.00 0.00 45.96 3.02
55 59 3.567585 TCAAGCATAGTGGATCTCGAGAG 59.432 47.826 21.52 5.49 0.00 3.20
62 66 1.175347 TGGATCTCGAGAGGCCATCG 61.175 60.000 27.03 20.88 41.50 3.84
83 87 3.064545 CGGAGGAAAAAGATGATGCTGTC 59.935 47.826 0.00 0.00 0.00 3.51
178 182 0.527385 GAGCCATCAGACGACAGAGC 60.527 60.000 0.00 0.00 0.00 4.09
197 201 2.369860 AGCGGATCTTGATAAGCCATCA 59.630 45.455 0.00 0.00 42.07 3.07
208 212 6.305272 TGATAAGCCATCAGAGAAAGAAGT 57.695 37.500 0.00 0.00 38.79 3.01
215 219 5.303971 CCATCAGAGAAAGAAGTTGACACT 58.696 41.667 0.00 0.00 33.11 3.55
216 220 5.178996 CCATCAGAGAAAGAAGTTGACACTG 59.821 44.000 0.00 0.00 31.60 3.66
217 221 5.344743 TCAGAGAAAGAAGTTGACACTGT 57.655 39.130 0.00 0.00 31.60 3.55
335 339 4.101585 AGAATAGATGCCGAGAAACCATCA 59.898 41.667 0.00 0.00 38.21 3.07
379 383 4.652881 TGTGAAGTCATCAGAGGATAGCAT 59.347 41.667 0.00 0.00 39.19 3.79
410 414 1.827789 GCCAGCCACTGACAAACCA 60.828 57.895 0.00 0.00 32.44 3.67
414 418 1.955778 CAGCCACTGACAAACCATCAA 59.044 47.619 0.00 0.00 32.44 2.57
486 490 3.740128 ATCGAGGCACCATCGCACC 62.740 63.158 0.00 0.00 39.98 5.01
633 650 3.436359 GGAGAAGGATCGATACTACCGTC 59.564 52.174 11.45 9.47 0.00 4.79
660 678 1.497223 TTGCGTGCCATTTTGCTTGC 61.497 50.000 0.00 0.00 34.24 4.01
667 685 3.015327 TGCCATTTTGCTTGCTTTTGTT 58.985 36.364 0.00 0.00 0.00 2.83
674 692 1.731160 TGCTTGCTTTTGTTTGTGCAC 59.269 42.857 10.75 10.75 35.01 4.57
677 695 2.739885 TGCTTTTGTTTGTGCACTGT 57.260 40.000 19.41 0.00 0.00 3.55
768 791 1.318934 ATAAGCCCCTCCCCACATTT 58.681 50.000 0.00 0.00 0.00 2.32
782 805 1.305623 CATTTGGAGGAGGGCAGCT 59.694 57.895 0.00 0.00 0.00 4.24
785 808 0.251341 TTTGGAGGAGGGCAGCTTTC 60.251 55.000 0.00 0.00 0.00 2.62
790 813 1.075659 GGAGGGCAGCTTTCTGGTT 59.924 57.895 0.00 0.00 40.65 3.67
891 919 5.697633 ACATGATTGTTTGGTTCAGATTTGC 59.302 36.000 0.00 0.00 29.55 3.68
915 943 1.584380 GCTTGCTGAACCTGAGCTGG 61.584 60.000 0.00 0.00 37.35 4.85
962 996 2.039480 TGGCCAGATGGATATTCAGAGC 59.961 50.000 0.00 0.00 37.39 4.09
1040 1078 5.777223 AGATGTGCTGTGGCTAGATAGATAA 59.223 40.000 0.00 0.00 39.59 1.75
1117 1158 2.897326 CCTAAAACCTCAAAACCCCAGG 59.103 50.000 0.00 0.00 0.00 4.45
1310 1366 1.767759 CCTCCCATTTGTGCTTAGGG 58.232 55.000 0.00 0.00 40.98 3.53
1311 1367 1.106285 CTCCCATTTGTGCTTAGGGC 58.894 55.000 0.00 0.00 39.42 5.19
1316 1373 3.328505 CCATTTGTGCTTAGGGCTTTTG 58.671 45.455 0.00 0.00 42.39 2.44
1318 1375 2.373335 TTGTGCTTAGGGCTTTTGGA 57.627 45.000 0.00 0.00 42.39 3.53
1319 1376 2.603075 TGTGCTTAGGGCTTTTGGAT 57.397 45.000 0.00 0.00 42.39 3.41
1480 1551 1.152963 CCGCTTCCCAGGGGTAATG 60.153 63.158 5.33 0.00 46.20 1.90
1488 1559 1.729586 CCAGGGGTAATGGCTAGCTA 58.270 55.000 15.72 9.47 0.00 3.32
1518 1590 1.623542 CCCCCTTTGACCCCGTAGAG 61.624 65.000 0.00 0.00 0.00 2.43
1530 1602 1.698532 CCCGTAGAGCCCTAGTCTCTA 59.301 57.143 12.42 12.42 40.95 2.43
1561 1652 1.671328 CACATCTGCATTGAGCTCTGG 59.329 52.381 16.19 5.40 45.94 3.86
1568 1659 1.380524 CATTGAGCTCTGGAAGGCTG 58.619 55.000 16.19 0.00 39.93 4.85
1583 1674 4.527944 GAAGGCTGGCTATTAGTCCTTTT 58.472 43.478 3.41 0.00 34.26 2.27
1587 1678 3.555966 CTGGCTATTAGTCCTTTTGGGG 58.444 50.000 0.00 0.00 40.87 4.96
1588 1679 2.307768 GGCTATTAGTCCTTTTGGGGC 58.692 52.381 0.00 0.00 40.74 5.80
1589 1680 2.357777 GGCTATTAGTCCTTTTGGGGCA 60.358 50.000 0.00 0.00 43.45 5.36
1590 1681 2.688446 GCTATTAGTCCTTTTGGGGCAC 59.312 50.000 0.00 0.00 43.45 5.01
1591 1682 3.624959 GCTATTAGTCCTTTTGGGGCACT 60.625 47.826 0.00 0.00 43.45 4.40
1592 1683 3.542969 ATTAGTCCTTTTGGGGCACTT 57.457 42.857 0.00 0.00 43.45 3.16
1593 1684 2.286365 TAGTCCTTTTGGGGCACTTG 57.714 50.000 0.00 0.00 43.45 3.16
1594 1685 1.115326 AGTCCTTTTGGGGCACTTGC 61.115 55.000 0.00 0.00 43.45 4.01
1612 1703 2.697654 TGCCATTTGCCAAAGTAATGC 58.302 42.857 0.00 0.00 40.16 3.56
1645 1736 3.260269 ACCCTGCTATGCTAGTATGGA 57.740 47.619 8.37 0.00 32.21 3.41
1657 1748 4.225042 TGCTAGTATGGAAAGCCTTCTGAA 59.775 41.667 0.00 0.00 35.33 3.02
1658 1749 4.813697 GCTAGTATGGAAAGCCTTCTGAAG 59.186 45.833 10.46 10.46 34.31 3.02
1659 1750 3.615155 AGTATGGAAAGCCTTCTGAAGC 58.385 45.455 11.93 7.66 34.31 3.86
1660 1751 2.895242 ATGGAAAGCCTTCTGAAGCT 57.105 45.000 11.93 9.71 42.40 3.74
1670 1765 5.072741 AGCCTTCTGAAGCTTTTGATTACA 58.927 37.500 11.93 0.00 35.22 2.41
1698 1793 6.748333 TTCACATGAGGATTGAATCTTGAC 57.252 37.500 5.03 0.00 0.00 3.18
1718 1813 1.598130 GCAGAGCGTGGTGTCCTTT 60.598 57.895 0.00 0.00 0.00 3.11
1781 1876 2.485426 CGAGCACAAGTTCACCATCAAT 59.515 45.455 0.00 0.00 0.00 2.57
1793 1888 5.011090 TCACCATCAATTACGAAGAGGAG 57.989 43.478 0.00 0.00 0.00 3.69
1801 1896 8.936864 CATCAATTACGAAGAGGAGTTTAAACT 58.063 33.333 20.67 20.67 43.16 2.66
1850 1945 1.302112 TGCGTCCAATCCTGCGAAA 60.302 52.632 0.00 0.00 0.00 3.46
1868 1963 4.616835 GCGAAAAGGAGCAAAATGTCATCT 60.617 41.667 0.00 0.00 0.00 2.90
1885 1980 3.825585 TCATCTGAGGATCCTGAGAATCG 59.174 47.826 31.20 22.28 39.55 3.34
2072 2170 9.388506 CTTGATATTGAGGTATAACCATGATCC 57.611 37.037 0.00 0.00 41.95 3.36
2073 2171 8.685257 TGATATTGAGGTATAACCATGATCCT 57.315 34.615 0.00 0.00 41.95 3.24
2091 2189 4.299586 TCCTCTGATAAACCAATGTGCA 57.700 40.909 0.00 0.00 0.00 4.57
2093 2191 6.000246 TCCTCTGATAAACCAATGTGCATA 58.000 37.500 0.00 0.00 0.00 3.14
2126 2224 8.728088 TTTTCTCTAAAGCTTAAATTCGCTTG 57.272 30.769 0.00 1.23 45.03 4.01
2141 2247 2.610374 TCGCTTGTTTTGACACACCTAC 59.390 45.455 0.00 0.00 0.00 3.18
2151 2257 8.644216 TGTTTTGACACACCTACTCTTCTATAA 58.356 33.333 0.00 0.00 0.00 0.98
2157 2263 7.852263 ACACACCTACTCTTCTATAATTTGCT 58.148 34.615 0.00 0.00 0.00 3.91
2226 2332 9.539825 TTCTGATGAACTTTGAGCTATAGATTC 57.460 33.333 3.21 0.85 0.00 2.52
2257 2363 2.158449 GCCTGCTGAATATCGGAATTCG 59.842 50.000 0.00 0.00 38.47 3.34
2286 2392 1.202675 ACCCATTGGCAAGCAACTTTG 60.203 47.619 5.96 0.00 33.59 2.77
2316 2422 3.507233 TCAAGTTTTCATCCATGGAGTGC 59.493 43.478 21.33 6.96 0.00 4.40
2318 2424 3.499338 AGTTTTCATCCATGGAGTGCAA 58.501 40.909 21.33 11.92 0.00 4.08
2327 2435 3.068024 TCCATGGAGTGCAAACTTGAAAC 59.932 43.478 11.44 0.00 0.00 2.78
2330 2438 3.355626 GGAGTGCAAACTTGAAACTCC 57.644 47.619 20.21 20.21 46.63 3.85
2337 2445 4.462483 TGCAAACTTGAAACTCCTCACTTT 59.538 37.500 0.00 0.00 0.00 2.66
2359 2467 5.378230 TTCAGTGCTGGGATTTATCTCAT 57.622 39.130 0.00 0.00 36.55 2.90
2381 2489 4.712122 TTTTTGCATAGACGGGGATTTC 57.288 40.909 0.00 0.00 0.00 2.17
2384 2492 2.684943 TGCATAGACGGGGATTTCCTA 58.315 47.619 0.00 0.00 35.95 2.94
2396 2504 3.448660 GGGATTTCCTACTTTGCATGCTT 59.551 43.478 20.33 3.09 35.95 3.91
2399 2507 6.211515 GGATTTCCTACTTTGCATGCTTATG 58.788 40.000 20.33 11.30 0.00 1.90
2438 2546 2.304470 GGAAGCTTCTTCTGGAGAACCT 59.696 50.000 25.05 0.00 39.44 3.50
2456 2564 2.158957 ACCTACAACATATGCTCCACCG 60.159 50.000 1.58 0.00 0.00 4.94
2529 2646 2.492484 AGAGGTAAGGACATCGACACAC 59.508 50.000 0.00 0.00 41.33 3.82
2534 2651 4.142227 GGTAAGGACATCGACACACTGTAT 60.142 45.833 0.00 0.00 0.00 2.29
2536 2653 4.111375 AGGACATCGACACACTGTATTC 57.889 45.455 0.00 0.00 0.00 1.75
2832 2951 7.713507 CCGACAAGTATATTTTGGACTCCAATA 59.286 37.037 11.47 7.35 43.55 1.90
2833 2952 9.104965 CGACAAGTATATTTTGGACTCCAATAA 57.895 33.333 11.47 9.06 43.55 1.40
2995 3159 5.420739 GGGCCAAATAGGAGTTTGAACATAA 59.579 40.000 4.39 0.00 40.64 1.90
3041 3205 7.844169 GTGATTTTGCATTCATCATTTGATTCG 59.156 33.333 6.33 0.00 33.34 3.34
3286 3451 3.056821 CACCGTACTCTTGATGACCTTCA 60.057 47.826 0.00 0.00 0.00 3.02
3299 3464 4.179926 TGACCTTCAGAAAGATGACTCG 57.820 45.455 0.00 0.00 34.14 4.18
3338 3503 4.279420 AGGACTGGCTTGAAATTCTTTGAC 59.721 41.667 0.00 0.00 0.00 3.18
3380 3545 4.631131 CTCGGCATGAGGTATGTAATTCA 58.369 43.478 0.00 0.00 41.29 2.57
3724 3982 8.958119 TTACTCATGATGATGGTAAAAGGTAC 57.042 34.615 0.00 0.00 29.52 3.34
3879 4137 6.493458 ACACTGGCTAGGAAATTAAAACATGT 59.507 34.615 0.85 0.00 0.00 3.21
3899 4157 2.630580 GTGGAGAAGACAGAACCTCACT 59.369 50.000 0.00 0.00 0.00 3.41
3983 4241 9.345517 CATTGTTATCAACTCATTGTAACTTGG 57.654 33.333 10.77 0.00 35.53 3.61
3990 4248 7.479980 TCAACTCATTGTAACTTGGAAGTTTG 58.520 34.615 9.95 3.26 40.27 2.93
3996 4254 6.783708 TTGTAACTTGGAAGTTTGGATTGT 57.216 33.333 9.95 0.00 46.52 2.71
3999 4257 4.670896 ACTTGGAAGTTTGGATTGTTGG 57.329 40.909 0.00 0.00 35.21 3.77
4001 4259 1.339610 TGGAAGTTTGGATTGTTGGCG 59.660 47.619 0.00 0.00 0.00 5.69
4010 4268 1.947456 GGATTGTTGGCGTATTCTCCC 59.053 52.381 0.00 0.00 0.00 4.30
4011 4269 2.421529 GGATTGTTGGCGTATTCTCCCT 60.422 50.000 0.00 0.00 0.00 4.20
4029 4287 6.899089 TCTCCCTTATAAGCATGTCAATTCA 58.101 36.000 6.99 0.00 0.00 2.57
4077 4335 1.135972 CAAGAAGTTGTGAATCGGGCG 60.136 52.381 0.00 0.00 0.00 6.13
4118 4376 3.135994 TGTAGGTTTTCTGCCGAAGTTC 58.864 45.455 0.00 0.00 0.00 3.01
4284 4547 7.462571 AAATGTGGTGATAAAAAGTACTCCC 57.537 36.000 0.00 0.00 0.00 4.30
4285 4548 5.836024 TGTGGTGATAAAAAGTACTCCCT 57.164 39.130 0.00 0.00 0.00 4.20
4286 4549 5.801380 TGTGGTGATAAAAAGTACTCCCTC 58.199 41.667 0.00 0.00 0.00 4.30
4287 4550 5.183969 GTGGTGATAAAAAGTACTCCCTCC 58.816 45.833 0.00 0.00 0.00 4.30
4288 4551 4.847512 TGGTGATAAAAAGTACTCCCTCCA 59.152 41.667 0.00 0.00 0.00 3.86
4289 4552 5.491078 TGGTGATAAAAAGTACTCCCTCCAT 59.509 40.000 0.00 0.00 0.00 3.41
4290 4553 6.674861 TGGTGATAAAAAGTACTCCCTCCATA 59.325 38.462 0.00 0.00 0.00 2.74
4291 4554 7.183112 TGGTGATAAAAAGTACTCCCTCCATAA 59.817 37.037 0.00 0.00 0.00 1.90
4292 4555 7.498239 GGTGATAAAAAGTACTCCCTCCATAAC 59.502 40.741 0.00 0.00 0.00 1.89
4293 4556 8.265764 GTGATAAAAAGTACTCCCTCCATAACT 58.734 37.037 0.00 0.00 0.00 2.24
4294 4557 8.832735 TGATAAAAAGTACTCCCTCCATAACTT 58.167 33.333 0.00 0.00 0.00 2.66
4305 4568 8.804204 ACTCCCTCCATAACTTAATATAAGACG 58.196 37.037 4.24 0.00 0.00 4.18
4306 4569 8.716674 TCCCTCCATAACTTAATATAAGACGT 57.283 34.615 4.24 0.00 0.00 4.34
4307 4570 9.151177 TCCCTCCATAACTTAATATAAGACGTT 57.849 33.333 4.24 0.00 0.00 3.99
4308 4571 9.774413 CCCTCCATAACTTAATATAAGACGTTT 57.226 33.333 4.24 0.00 0.00 3.60
4317 4580 9.415544 ACTTAATATAAGACGTTTTTCGACACT 57.584 29.630 0.00 0.00 42.86 3.55
4321 4584 9.577110 AATATAAGACGTTTTTCGACACTATGA 57.423 29.630 0.00 0.00 42.86 2.15
4322 4585 9.745880 ATATAAGACGTTTTTCGACACTATGAT 57.254 29.630 0.00 0.00 42.86 2.45
4324 4587 7.507672 AAGACGTTTTTCGACACTATGATAG 57.492 36.000 0.00 0.00 42.86 2.08
4325 4588 6.618811 AGACGTTTTTCGACACTATGATAGT 58.381 36.000 0.00 0.00 42.86 2.12
4348 4611 8.220755 AGTGTAAACAAAATGTGTCATACAGT 57.779 30.769 3.35 4.10 43.80 3.55
4349 4612 9.332502 AGTGTAAACAAAATGTGTCATACAGTA 57.667 29.630 7.59 0.00 43.80 2.74
4355 4618 9.840427 AACAAAATGTGTCATACAGTATTAAGC 57.160 29.630 0.00 0.00 43.80 3.09
4356 4619 9.231297 ACAAAATGTGTCATACAGTATTAAGCT 57.769 29.630 0.00 0.00 43.80 3.74
4359 4622 9.884636 AAATGTGTCATACAGTATTAAGCTACA 57.115 29.630 0.00 0.00 43.80 2.74
4360 4623 9.534565 AATGTGTCATACAGTATTAAGCTACAG 57.465 33.333 0.00 0.00 43.80 2.74
4361 4624 8.288689 TGTGTCATACAGTATTAAGCTACAGA 57.711 34.615 0.00 0.00 33.42 3.41
4362 4625 8.406297 TGTGTCATACAGTATTAAGCTACAGAG 58.594 37.037 0.00 0.00 33.42 3.35
4363 4626 7.863375 GTGTCATACAGTATTAAGCTACAGAGG 59.137 40.741 0.00 0.00 0.00 3.69
4364 4627 7.014326 TGTCATACAGTATTAAGCTACAGAGGG 59.986 40.741 0.00 0.00 0.00 4.30
4386 4649 8.024145 AGGGAGTAGAAAGTTACAATATCTGG 57.976 38.462 0.00 0.00 0.00 3.86
4410 4673 2.155279 GGTCCTTTCTCAACTTCCTGC 58.845 52.381 0.00 0.00 0.00 4.85
4442 4705 7.988599 TGTGTTAAGAAGGTTTGAGTTAGCTAA 59.011 33.333 0.86 0.86 0.00 3.09
4448 4711 7.454225 AGAAGGTTTGAGTTAGCTAACATTCT 58.546 34.615 32.48 23.52 43.88 2.40
4451 4714 7.224297 AGGTTTGAGTTAGCTAACATTCTTCA 58.776 34.615 32.48 24.36 38.62 3.02
4571 4834 4.021016 GGAGCGATTCCACTATTCCAGTAT 60.021 45.833 1.87 0.00 46.01 2.12
4717 4981 0.762842 ACAGGTATGCATCCGGGCTA 60.763 55.000 0.19 0.00 34.04 3.93
4778 5042 7.759886 GGTATAAATTCGAGCTCTATGCATACA 59.240 37.037 12.85 0.00 45.94 2.29
4780 5044 8.783833 ATAAATTCGAGCTCTATGCATACATT 57.216 30.769 12.85 0.00 45.94 2.71
4783 5047 4.550422 TCGAGCTCTATGCATACATTGTC 58.450 43.478 12.85 0.00 45.94 3.18
4793 5057 3.951037 TGCATACATTGTCCCATGGTTAC 59.049 43.478 11.73 9.22 0.00 2.50
4802 5066 3.244946 TGTCCCATGGTTACGAAAATCCA 60.245 43.478 11.73 0.00 0.00 3.41
4825 5089 9.685828 TCCAACTTTATTCTTTTGGAAATAACG 57.314 29.630 0.00 0.00 43.61 3.18
4841 5105 8.068977 TGGAAATAACGTGTACAATTACAACAC 58.931 33.333 0.00 6.94 40.00 3.32
4873 5137 6.156949 TGAGAATACTAGCAGAATCCAAAGGT 59.843 38.462 0.00 0.00 0.00 3.50
4912 5176 3.749088 CGGGTTTGTATCTTGCTACACAA 59.251 43.478 0.00 0.00 36.62 3.33
4930 5194 0.751643 AAAGCAGTGGTGGAAAGCGT 60.752 50.000 0.00 0.00 0.00 5.07
4950 5214 4.525411 GTGTAAGCACGTACACTTGTTT 57.475 40.909 16.41 0.00 46.84 2.83
4973 5237 5.168569 TGTCGGTCATTACAATTCTGTCTC 58.831 41.667 0.00 0.00 36.96 3.36
5009 5273 3.968724 GTCGGCATTTCATCTTTTATCGC 59.031 43.478 0.00 0.00 0.00 4.58
5016 5280 7.254084 GGCATTTCATCTTTTATCGCGAATTTT 60.254 33.333 15.24 0.00 0.00 1.82
5035 5299 3.136750 CAGGCGGGGAGATCAGAG 58.863 66.667 0.00 0.00 0.00 3.35
5110 5374 2.185004 ACTTGGAACCTCATGAACGG 57.815 50.000 0.00 0.00 0.00 4.44
5155 5419 0.536006 AGCTTTGCCAGACCTGTGTC 60.536 55.000 0.00 0.00 42.09 3.67
5173 5437 4.095610 GTGTCGTTTTGTTCTCCTTTGTG 58.904 43.478 0.00 0.00 0.00 3.33
5211 5475 3.080300 TCTGTTTCCAAACCTGTGTGT 57.920 42.857 0.00 0.00 38.11 3.72
5259 5535 9.647797 TCGTATATATTTGTTGTTCTCTGTTGT 57.352 29.630 0.00 0.00 0.00 3.32
5267 5543 8.725405 TTTGTTGTTCTCTGTTGTATTGTAGA 57.275 30.769 0.00 0.00 0.00 2.59
5268 5544 7.709269 TGTTGTTCTCTGTTGTATTGTAGAC 57.291 36.000 0.00 0.00 0.00 2.59
5269 5545 6.704493 TGTTGTTCTCTGTTGTATTGTAGACC 59.296 38.462 0.00 0.00 0.00 3.85
5270 5546 6.413783 TGTTCTCTGTTGTATTGTAGACCA 57.586 37.500 0.00 0.00 0.00 4.02
5271 5547 6.455647 TGTTCTCTGTTGTATTGTAGACCAG 58.544 40.000 0.00 0.00 0.00 4.00
5272 5548 6.041637 TGTTCTCTGTTGTATTGTAGACCAGT 59.958 38.462 0.00 0.00 0.00 4.00
5273 5549 6.665992 TCTCTGTTGTATTGTAGACCAGTT 57.334 37.500 0.00 0.00 0.00 3.16
5274 5550 6.455647 TCTCTGTTGTATTGTAGACCAGTTG 58.544 40.000 0.00 0.00 0.00 3.16
5275 5551 5.547465 TCTGTTGTATTGTAGACCAGTTGG 58.453 41.667 0.00 0.00 42.17 3.77
5276 5552 4.647611 TGTTGTATTGTAGACCAGTTGGG 58.352 43.478 2.79 0.00 44.81 4.12
5277 5553 3.992943 TGTATTGTAGACCAGTTGGGG 57.007 47.619 2.79 0.00 42.91 4.96
5278 5554 3.522759 TGTATTGTAGACCAGTTGGGGA 58.477 45.455 2.79 0.00 42.91 4.81
5279 5555 3.517901 TGTATTGTAGACCAGTTGGGGAG 59.482 47.826 2.79 0.00 42.91 4.30
5280 5556 2.409064 TTGTAGACCAGTTGGGGAGA 57.591 50.000 2.79 0.00 42.91 3.71
5281 5557 2.409064 TGTAGACCAGTTGGGGAGAA 57.591 50.000 2.79 0.00 42.91 2.87
5282 5558 2.696775 TGTAGACCAGTTGGGGAGAAA 58.303 47.619 2.79 0.00 42.91 2.52
5283 5559 3.256704 TGTAGACCAGTTGGGGAGAAAT 58.743 45.455 2.79 0.00 42.91 2.17
5284 5560 3.655777 TGTAGACCAGTTGGGGAGAAATT 59.344 43.478 2.79 0.00 42.91 1.82
5294 5570 5.069119 AGTTGGGGAGAAATTTGTTGTTCTC 59.931 40.000 0.00 5.09 45.99 2.87
5309 5585 7.709269 TGTTGTTCTCTGTTGTATTGTAGAC 57.291 36.000 0.00 0.00 0.00 2.59
5314 5590 6.665992 TCTCTGTTGTATTGTAGACCAGTT 57.334 37.500 0.00 0.00 0.00 3.16
5319 5595 3.522759 TGTATTGTAGACCAGTTGGGGA 58.477 45.455 2.79 0.00 42.91 4.81
5331 5607 1.076332 GTTGGGGAGAATGTTCGTCG 58.924 55.000 0.00 0.00 0.00 5.12
5335 5611 0.245539 GGGAGAATGTTCGTCGGTGA 59.754 55.000 0.00 0.00 0.00 4.02
5408 5694 4.909696 CACAATGGACACTTGTGGTTTA 57.090 40.909 8.01 0.00 46.16 2.01
5409 5695 4.606961 CACAATGGACACTTGTGGTTTAC 58.393 43.478 8.01 0.00 46.16 2.01
5434 5720 1.131883 GCAACTGCAGCTATCACAAGG 59.868 52.381 15.27 0.00 41.59 3.61
5435 5721 2.430465 CAACTGCAGCTATCACAAGGT 58.570 47.619 15.27 0.00 0.00 3.50
5436 5722 2.105006 ACTGCAGCTATCACAAGGTG 57.895 50.000 15.27 0.00 45.62 4.00
5439 5725 3.076621 CTGCAGCTATCACAAGGTGAAA 58.923 45.455 0.00 0.00 45.96 2.69
5440 5726 3.076621 TGCAGCTATCACAAGGTGAAAG 58.923 45.455 7.21 0.00 45.96 2.62
5442 5728 3.126000 GCAGCTATCACAAGGTGAAAGAC 59.874 47.826 7.21 0.00 45.96 3.01
5443 5729 4.318332 CAGCTATCACAAGGTGAAAGACA 58.682 43.478 2.87 0.00 45.96 3.41
5444 5730 4.940046 CAGCTATCACAAGGTGAAAGACAT 59.060 41.667 2.87 0.00 45.96 3.06
5445 5731 6.108687 CAGCTATCACAAGGTGAAAGACATA 58.891 40.000 2.87 0.00 45.96 2.29
5446 5732 6.595326 CAGCTATCACAAGGTGAAAGACATAA 59.405 38.462 2.87 0.00 45.96 1.90
5463 5749 5.183904 AGACATAAAGACATGGTTTTCTGCC 59.816 40.000 0.00 0.00 0.00 4.85
5472 5878 5.754782 ACATGGTTTTCTGCCACTATATGA 58.245 37.500 0.00 0.00 39.03 2.15
5473 5879 6.367983 ACATGGTTTTCTGCCACTATATGAT 58.632 36.000 0.00 0.00 39.03 2.45
5486 5892 8.152898 TGCCACTATATGATCATATAAGATGGC 58.847 37.037 38.15 38.15 45.82 4.40
5488 5894 8.363390 CCACTATATGATCATATAAGATGGCGT 58.637 37.037 27.56 20.78 36.23 5.68
5511 5917 8.547894 GCGTTTTTCTGGAATTTAACAAGAAAT 58.452 29.630 0.00 0.00 0.00 2.17
5609 6018 4.320057 GGCACATCTTGAGAAACTTGACAG 60.320 45.833 0.00 0.00 0.00 3.51
5637 6047 2.419667 GCATTTCAAAGCCTGTTGCAT 58.580 42.857 0.00 0.00 44.83 3.96
5700 6110 6.428771 TGGAAGTTAACCGGATCTAAAAGTTG 59.571 38.462 9.46 0.00 0.00 3.16
5707 6117 1.810151 GGATCTAAAAGTTGGCACGCA 59.190 47.619 0.00 0.00 0.00 5.24
5708 6118 2.227865 GGATCTAAAAGTTGGCACGCAA 59.772 45.455 0.00 0.00 0.00 4.85
5846 6260 7.599245 GCCTACATAGTTGCGAAGATTACTTAT 59.401 37.037 0.00 0.00 36.39 1.73
6011 6437 1.986698 CGAACCAGTCGTACCGATTT 58.013 50.000 0.00 0.00 45.09 2.17
6032 6458 3.202906 TCTTGCAATGTAATCGTAGGCC 58.797 45.455 0.00 0.00 0.00 5.19
6038 6464 2.007641 GTAATCGTAGGCCGCGTCG 61.008 63.158 19.28 12.60 36.19 5.12
6098 6524 2.033372 GAGTAGGGAAGAGGCAGGTAC 58.967 57.143 0.00 0.00 0.00 3.34
6155 6582 5.711506 TGTTAAGAATGTTCAGTGCCATGAT 59.288 36.000 0.00 0.00 0.00 2.45
6160 6587 2.722094 TGTTCAGTGCCATGATAACCC 58.278 47.619 0.00 0.00 0.00 4.11
6183 6610 1.936547 GAGGATCAACAGCGATGGAAC 59.063 52.381 5.32 0.00 33.17 3.62
6281 6708 8.298030 AGCTCTTGTTTATAATTTGCAACAAC 57.702 30.769 0.00 0.00 34.87 3.32
6343 6779 9.989869 GCCTCAAGAACTGATTAAACTATAAAC 57.010 33.333 0.00 0.00 32.14 2.01
6386 6822 9.820229 TTTACACAAATCAGAATTTACACGATC 57.180 29.630 0.00 0.00 33.27 3.69
6392 6828 7.470289 AATCAGAATTTACACGATCTAGTGC 57.530 36.000 0.00 0.00 45.45 4.40
6393 6829 5.348986 TCAGAATTTACACGATCTAGTGCC 58.651 41.667 0.00 0.00 45.45 5.01
6411 6847 1.877443 GCCGGAGAGCAAAAACAGTTA 59.123 47.619 5.05 0.00 0.00 2.24
6412 6848 2.488153 GCCGGAGAGCAAAAACAGTTAT 59.512 45.455 5.05 0.00 0.00 1.89
6421 6857 6.421801 AGAGCAAAAACAGTTATCATTGCAAC 59.578 34.615 19.72 15.07 44.08 4.17
6424 6865 7.280652 AGCAAAAACAGTTATCATTGCAACTTT 59.719 29.630 19.72 0.00 44.08 2.66
6437 6878 1.538849 GCAACTTTGTTGAGCAAGGGG 60.539 52.381 13.75 0.00 38.34 4.79
6440 6881 0.675633 CTTTGTTGAGCAAGGGGTGG 59.324 55.000 0.00 0.00 38.47 4.61
6442 6883 2.991540 GTTGAGCAAGGGGTGGGC 60.992 66.667 0.00 0.00 0.00 5.36
6449 6890 2.201210 AAGGGGTGGGCCAAACAG 59.799 61.111 8.40 0.00 36.17 3.16
6450 6891 4.621087 AGGGGTGGGCCAAACAGC 62.621 66.667 8.40 2.60 36.17 4.40
6454 6895 3.225798 GTGGGCCAAACAGCAGCA 61.226 61.111 8.40 0.00 0.00 4.41
6455 6896 3.225798 TGGGCCAAACAGCAGCAC 61.226 61.111 2.13 0.00 0.00 4.40
6463 6904 1.321148 CAAACAGCAGCACAAAACACG 59.679 47.619 0.00 0.00 0.00 4.49
6468 6909 0.801836 GCAGCACAAAACACGCAACT 60.802 50.000 0.00 0.00 0.00 3.16
6469 6910 0.915904 CAGCACAAAACACGCAACTG 59.084 50.000 0.00 0.00 0.00 3.16
6471 6912 1.201181 AGCACAAAACACGCAACTGAA 59.799 42.857 0.00 0.00 0.00 3.02
6483 6924 5.008613 ACACGCAACTGAACAACTGAAATAT 59.991 36.000 0.00 0.00 0.00 1.28
6484 6925 6.203915 ACACGCAACTGAACAACTGAAATATA 59.796 34.615 0.00 0.00 0.00 0.86
6485 6926 6.519761 CACGCAACTGAACAACTGAAATATAC 59.480 38.462 0.00 0.00 0.00 1.47
6486 6927 6.426937 ACGCAACTGAACAACTGAAATATACT 59.573 34.615 0.00 0.00 0.00 2.12
6487 6928 7.601130 ACGCAACTGAACAACTGAAATATACTA 59.399 33.333 0.00 0.00 0.00 1.82
6488 6929 8.110612 CGCAACTGAACAACTGAAATATACTAG 58.889 37.037 0.00 0.00 0.00 2.57
6489 6930 8.936864 GCAACTGAACAACTGAAATATACTAGT 58.063 33.333 0.00 0.00 0.00 2.57
6508 6949 9.775854 ATACTAGTAGTAGATAAGTTCAGCGAA 57.224 33.333 15.08 0.00 33.66 4.70
6509 6950 8.503458 ACTAGTAGTAGATAAGTTCAGCGAAA 57.497 34.615 11.68 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.036952 ATGGCTCAACACTCACCTCG 60.037 55.000 0.00 0.00 0.00 4.63
25 26 2.239402 TCCACTATGCTTGATGGCTCAA 59.761 45.455 0.00 0.00 39.07 3.02
37 38 1.067915 GCCTCTCGAGATCCACTATGC 60.068 57.143 17.03 5.26 0.00 3.14
55 59 1.678101 CATCTTTTTCCTCCGATGGCC 59.322 52.381 0.00 0.00 31.87 5.36
62 66 4.012374 TGACAGCATCATCTTTTTCCTCC 58.988 43.478 0.00 0.00 29.99 4.30
83 87 0.459237 CGCTGTCCTCTACTGGCTTG 60.459 60.000 0.00 0.00 0.00 4.01
147 151 0.461693 GATGGCTCAGCACTCACCTC 60.462 60.000 0.00 0.00 0.00 3.85
178 182 4.021632 TCTCTGATGGCTTATCAAGATCCG 60.022 45.833 5.85 0.00 44.84 4.18
197 201 5.491982 ACAACAGTGTCAACTTCTTTCTCT 58.508 37.500 0.00 0.00 32.98 3.10
215 219 1.699083 TCCTCTGATGGCTTGACAACA 59.301 47.619 0.00 0.00 0.00 3.33
216 220 2.079925 GTCCTCTGATGGCTTGACAAC 58.920 52.381 0.00 0.00 0.00 3.32
217 221 1.699083 TGTCCTCTGATGGCTTGACAA 59.301 47.619 0.00 0.00 30.44 3.18
257 261 1.140052 ACTGATGGTTTGTCGGTGACA 59.860 47.619 0.00 0.00 41.09 3.58
335 339 3.254657 CAGTGTCGTCTTCTTTCTCCTCT 59.745 47.826 0.00 0.00 0.00 3.69
410 414 3.620966 CGCCTTCTTCCTCTTCCTTTGAT 60.621 47.826 0.00 0.00 0.00 2.57
414 418 0.035915 GCGCCTTCTTCCTCTTCCTT 60.036 55.000 0.00 0.00 0.00 3.36
439 443 3.257561 CATGCGACGGCTTCTCGG 61.258 66.667 0.00 0.00 40.82 4.63
466 470 2.969238 GCGATGGTGCCTCGATGG 60.969 66.667 12.02 0.00 38.38 3.51
511 515 3.390521 CTGTGGCAGGCGAGGGTA 61.391 66.667 0.00 0.00 0.00 3.69
556 560 1.677552 CCCGGCTAACCACTGTCTT 59.322 57.895 0.00 0.00 34.57 3.01
557 561 2.955881 GCCCGGCTAACCACTGTCT 61.956 63.158 0.71 0.00 34.57 3.41
603 616 2.674420 TCGATCCTTCTCCCGGTTAAT 58.326 47.619 0.00 0.00 0.00 1.40
633 650 2.542766 AATGGCACGCAAAACTATCG 57.457 45.000 0.00 0.00 0.00 2.92
660 678 4.685628 ACTCAAACAGTGCACAAACAAAAG 59.314 37.500 21.04 10.17 32.26 2.27
667 685 5.378292 TTTACAACTCAAACAGTGCACAA 57.622 34.783 21.04 0.00 34.56 3.33
674 692 6.701400 CCCCTCAAATTTTACAACTCAAACAG 59.299 38.462 0.00 0.00 0.00 3.16
677 695 5.900123 TCCCCCTCAAATTTTACAACTCAAA 59.100 36.000 0.00 0.00 0.00 2.69
768 791 1.539869 AGAAAGCTGCCCTCCTCCA 60.540 57.895 0.00 0.00 0.00 3.86
807 835 2.752354 CAAACCACACCAACAGAGACAA 59.248 45.455 0.00 0.00 0.00 3.18
809 837 1.676006 CCAAACCACACCAACAGAGAC 59.324 52.381 0.00 0.00 0.00 3.36
810 838 1.283613 ACCAAACCACACCAACAGAGA 59.716 47.619 0.00 0.00 0.00 3.10
811 839 1.762708 ACCAAACCACACCAACAGAG 58.237 50.000 0.00 0.00 0.00 3.35
874 902 4.431809 CACAAGCAAATCTGAACCAAACA 58.568 39.130 0.00 0.00 0.00 2.83
891 919 1.266175 CTCAGGTTCAGCAAGCACAAG 59.734 52.381 0.00 0.00 31.93 3.16
915 943 2.035066 ACACAGGCAAGCAATTCTGAAC 59.965 45.455 0.00 0.00 0.00 3.18
945 974 4.452795 CAGCAAGCTCTGAATATCCATCTG 59.547 45.833 0.00 0.00 36.19 2.90
962 996 1.679139 TTTGACCACAGGACAGCAAG 58.321 50.000 0.00 0.00 0.00 4.01
1040 1078 8.375493 TGGAAGGTTGTTCTGAATAGTAGTAT 57.625 34.615 0.00 0.00 0.00 2.12
1075 1116 3.321968 GGTTGTTCCAGAGCATTCCTTTT 59.678 43.478 0.00 0.00 35.97 2.27
1076 1117 2.893489 GGTTGTTCCAGAGCATTCCTTT 59.107 45.455 0.00 0.00 35.97 3.11
1089 1130 5.353938 GGTTTTGAGGTTTTAGGTTGTTCC 58.646 41.667 0.00 0.00 0.00 3.62
1310 1366 1.606224 CCACACCTGCAATCCAAAAGC 60.606 52.381 0.00 0.00 0.00 3.51
1311 1367 1.962807 TCCACACCTGCAATCCAAAAG 59.037 47.619 0.00 0.00 0.00 2.27
1316 1373 0.895100 TGCTTCCACACCTGCAATCC 60.895 55.000 0.00 0.00 32.12 3.01
1318 1375 0.111061 TCTGCTTCCACACCTGCAAT 59.889 50.000 0.00 0.00 34.90 3.56
1319 1376 0.106769 TTCTGCTTCCACACCTGCAA 60.107 50.000 0.00 0.00 34.90 4.08
1471 1542 2.180308 AGAGTAGCTAGCCATTACCCCT 59.820 50.000 12.13 5.38 0.00 4.79
1480 1551 2.566570 GCGGGGAGAGTAGCTAGCC 61.567 68.421 12.13 0.00 0.00 3.93
1506 1578 1.229359 CTAGGGCTCTACGGGGTCA 59.771 63.158 0.00 0.00 0.00 4.02
1518 1590 4.739195 CGATTGCTAATAGAGACTAGGGC 58.261 47.826 0.00 0.00 0.00 5.19
1561 1652 3.847671 AAGGACTAATAGCCAGCCTTC 57.152 47.619 0.00 0.00 30.32 3.46
1568 1659 2.307768 GCCCCAAAAGGACTAATAGCC 58.692 52.381 0.00 0.00 38.24 3.93
1593 1684 1.660104 CGCATTACTTTGGCAAATGGC 59.340 47.619 13.89 11.32 43.74 4.40
1594 1685 2.270047 CCGCATTACTTTGGCAAATGG 58.730 47.619 13.89 5.37 32.44 3.16
1597 1688 1.333177 ACCCGCATTACTTTGGCAAA 58.667 45.000 12.79 12.79 0.00 3.68
1630 1721 4.278975 AGGCTTTCCATACTAGCATAGC 57.721 45.455 0.00 0.00 37.16 2.97
1633 1724 4.410228 TCAGAAGGCTTTCCATACTAGCAT 59.590 41.667 4.73 0.00 36.64 3.79
1685 1780 2.031437 GCTCTGCGGTCAAGATTCAATC 59.969 50.000 0.00 0.00 0.00 2.67
1718 1813 3.196040 GCATTCCTCCAGCCAATCA 57.804 52.632 0.00 0.00 0.00 2.57
1793 1888 4.808895 CCAGGTGCCTTTTTGAGTTTAAAC 59.191 41.667 10.47 10.47 0.00 2.01
1812 1907 3.000819 TGTACCTCCGGCACCAGG 61.001 66.667 5.38 5.38 35.69 4.45
1832 1927 0.886938 TTTTCGCAGGATTGGACGCA 60.887 50.000 0.00 0.00 0.00 5.24
1850 1945 4.015084 CCTCAGATGACATTTTGCTCCTT 58.985 43.478 0.00 0.00 0.00 3.36
1868 1963 1.780503 TGCGATTCTCAGGATCCTCA 58.219 50.000 12.69 0.00 0.00 3.86
1885 1980 2.038557 TCCTGTCCACTAGTTCCTTTGC 59.961 50.000 0.00 0.00 0.00 3.68
2042 2140 9.650539 CATGGTTATACCTCAATATCAAGAGAG 57.349 37.037 0.00 0.00 39.58 3.20
2070 2168 4.299586 TGCACATTGGTTTATCAGAGGA 57.700 40.909 0.00 0.00 0.00 3.71
2071 2169 6.698008 TTATGCACATTGGTTTATCAGAGG 57.302 37.500 0.00 0.00 0.00 3.69
2072 2170 6.974622 GGTTTATGCACATTGGTTTATCAGAG 59.025 38.462 0.00 0.00 0.00 3.35
2073 2171 6.435591 TGGTTTATGCACATTGGTTTATCAGA 59.564 34.615 0.00 0.00 0.00 3.27
2121 2219 2.612212 AGTAGGTGTGTCAAAACAAGCG 59.388 45.455 0.00 0.00 37.08 4.68
2126 2224 9.654663 ATTATAGAAGAGTAGGTGTGTCAAAAC 57.345 33.333 0.00 0.00 0.00 2.43
2151 2257 9.167311 CCTCACTCTGTATAAACTTTAGCAAAT 57.833 33.333 0.00 0.00 0.00 2.32
2157 2263 7.847096 TGATGCCTCACTCTGTATAAACTTTA 58.153 34.615 0.00 0.00 0.00 1.85
2226 2332 5.347093 CGATATTCAGCAGGCATGTAAGTAG 59.653 44.000 0.00 0.00 0.00 2.57
2257 2363 0.039035 TGCCAATGGGTAACAGGGTC 59.961 55.000 0.00 0.00 36.17 4.46
2266 2372 1.130777 AAAGTTGCTTGCCAATGGGT 58.869 45.000 0.00 0.00 35.55 4.51
2286 2392 9.342308 TCCATGGATGAAAACTTGAATAGATAC 57.658 33.333 11.44 0.00 0.00 2.24
2316 2422 6.620678 TGAAAAGTGAGGAGTTTCAAGTTTG 58.379 36.000 0.00 0.00 38.09 2.93
2318 2424 5.946377 ACTGAAAAGTGAGGAGTTTCAAGTT 59.054 36.000 0.00 0.00 39.92 2.66
2327 2435 2.149578 CCAGCACTGAAAAGTGAGGAG 58.850 52.381 9.97 0.00 42.02 3.69
2330 2438 2.260844 TCCCAGCACTGAAAAGTGAG 57.739 50.000 9.97 1.63 42.02 3.51
2337 2445 4.842531 TGAGATAAATCCCAGCACTGAA 57.157 40.909 0.00 0.00 0.00 3.02
2396 2504 7.444183 GCTTCCTGGTTGTATAACTAATGCATA 59.556 37.037 0.00 0.00 36.99 3.14
2399 2507 5.823045 AGCTTCCTGGTTGTATAACTAATGC 59.177 40.000 2.17 0.00 36.99 3.56
2407 2515 5.338381 CCAGAAGAAGCTTCCTGGTTGTATA 60.338 44.000 29.63 0.00 40.84 1.47
2432 2540 4.384208 GGTGGAGCATATGTTGTAGGTTCT 60.384 45.833 4.29 0.00 0.00 3.01
2438 2546 2.112190 TCCGGTGGAGCATATGTTGTA 58.888 47.619 0.00 0.00 0.00 2.41
2456 2564 2.039084 AGTGATGTTCCTGTTGAGGTCC 59.961 50.000 0.00 0.00 40.76 4.46
2516 2624 3.845178 TGAATACAGTGTGTCGATGTCC 58.155 45.455 5.88 0.00 0.00 4.02
2534 2651 8.298854 CAACCAAATGATGAGAACATTACTGAA 58.701 33.333 0.00 0.00 37.04 3.02
2536 2653 7.819644 TCAACCAAATGATGAGAACATTACTG 58.180 34.615 0.00 0.00 37.04 2.74
2578 2695 3.424703 TCCCATGGCTTCAAGAGAAAAG 58.575 45.455 6.09 0.00 32.35 2.27
2754 2873 3.820557 ACACTAGCAGTCACCAACAAAT 58.179 40.909 0.00 0.00 0.00 2.32
2783 2902 6.086371 CGGCTTTTTAAAATGTCGAAAGAGTC 59.914 38.462 27.27 9.29 41.75 3.36
3014 3178 8.786826 AATCAAATGATGAATGCAAAATCACT 57.213 26.923 10.46 0.00 42.54 3.41
3015 3179 7.844169 CGAATCAAATGATGAATGCAAAATCAC 59.156 33.333 10.46 3.55 42.54 3.06
3041 3205 7.912250 CCTGTTGTCACTATTTCATTAATCTGC 59.088 37.037 0.00 0.00 0.00 4.26
3286 3451 5.694006 GCATATGTAAGCGAGTCATCTTTCT 59.306 40.000 4.29 0.00 0.00 2.52
3299 3464 4.305769 CAGTCCTCTGAGCATATGTAAGC 58.694 47.826 4.29 0.00 43.76 3.09
3338 3503 4.920340 CGAGGGATTCTTTGTCTGATATCG 59.080 45.833 0.00 0.00 0.00 2.92
3724 3982 4.044336 TGGTTTCACATGCTTTGAAGTG 57.956 40.909 0.00 0.00 34.50 3.16
3793 4051 4.660303 ACCATAGAAGCATACATTCTCCCA 59.340 41.667 0.00 0.00 38.05 4.37
3879 4137 2.964209 AGTGAGGTTCTGTCTTCTCCA 58.036 47.619 0.00 0.00 0.00 3.86
3957 4215 9.345517 CCAAGTTACAATGAGTTGATAACAATG 57.654 33.333 0.00 0.00 38.71 2.82
3962 4220 8.918202 ACTTCCAAGTTACAATGAGTTGATAA 57.082 30.769 0.00 0.00 35.86 1.75
3983 4241 2.793278 ACGCCAACAATCCAAACTTC 57.207 45.000 0.00 0.00 0.00 3.01
3990 4248 1.947456 GGGAGAATACGCCAACAATCC 59.053 52.381 0.00 0.00 37.72 3.01
3996 4254 4.101898 TGCTTATAAGGGAGAATACGCCAA 59.898 41.667 14.28 0.00 37.72 4.52
3999 4257 5.238583 ACATGCTTATAAGGGAGAATACGC 58.761 41.667 14.28 0.00 0.00 4.42
4001 4259 8.854614 ATTGACATGCTTATAAGGGAGAATAC 57.145 34.615 14.28 0.00 0.00 1.89
4050 4308 5.465390 CCGATTCACAACTTCTTGTTCTACA 59.535 40.000 0.00 0.00 38.66 2.74
4055 4313 2.293399 GCCCGATTCACAACTTCTTGTT 59.707 45.455 0.00 0.00 38.66 2.83
4077 4335 7.023575 CCTACATGACTGCAAAGAATTGTAAC 58.976 38.462 0.00 0.00 38.85 2.50
4118 4376 2.526304 TGTCCTTCAACCTCTGAACG 57.474 50.000 0.00 0.00 39.20 3.95
4142 4400 7.341805 TGAAGATAAGATCCTCCCTCAAAAAG 58.658 38.462 0.00 0.00 0.00 2.27
4148 4406 3.900601 TGCTGAAGATAAGATCCTCCCTC 59.099 47.826 0.00 0.00 0.00 4.30
4279 4542 8.804204 CGTCTTATATTAAGTTATGGAGGGAGT 58.196 37.037 0.00 0.00 0.00 3.85
4280 4543 8.804204 ACGTCTTATATTAAGTTATGGAGGGAG 58.196 37.037 0.00 0.00 0.00 4.30
4281 4544 8.716674 ACGTCTTATATTAAGTTATGGAGGGA 57.283 34.615 0.00 0.00 0.00 4.20
4282 4545 9.774413 AAACGTCTTATATTAAGTTATGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
4291 4554 9.415544 AGTGTCGAAAAACGTCTTATATTAAGT 57.584 29.630 0.00 0.00 43.13 2.24
4295 4558 9.577110 TCATAGTGTCGAAAAACGTCTTATATT 57.423 29.630 0.00 0.00 43.13 1.28
4296 4559 9.745880 ATCATAGTGTCGAAAAACGTCTTATAT 57.254 29.630 0.00 0.00 43.13 0.86
4298 4561 9.234384 CTATCATAGTGTCGAAAAACGTCTTAT 57.766 33.333 0.00 0.00 43.13 1.73
4299 4562 8.239314 ACTATCATAGTGTCGAAAAACGTCTTA 58.761 33.333 0.00 0.00 39.30 2.10
4300 4563 7.088905 ACTATCATAGTGTCGAAAAACGTCTT 58.911 34.615 0.00 0.00 39.30 3.01
4301 4564 6.618811 ACTATCATAGTGTCGAAAAACGTCT 58.381 36.000 0.00 0.00 39.30 4.18
4302 4565 6.866179 ACTATCATAGTGTCGAAAAACGTC 57.134 37.500 0.00 0.00 39.30 4.34
4322 4585 9.332502 ACTGTATGACACATTTTGTTTACACTA 57.667 29.630 0.00 0.00 39.17 2.74
4323 4586 8.220755 ACTGTATGACACATTTTGTTTACACT 57.779 30.769 0.00 0.00 39.17 3.55
4329 4592 9.840427 GCTTAATACTGTATGACACATTTTGTT 57.160 29.630 0.22 0.00 39.17 2.83
4330 4593 9.231297 AGCTTAATACTGTATGACACATTTTGT 57.769 29.630 0.22 0.00 43.10 2.83
4333 4596 9.884636 TGTAGCTTAATACTGTATGACACATTT 57.115 29.630 0.22 0.00 36.29 2.32
4334 4597 9.534565 CTGTAGCTTAATACTGTATGACACATT 57.465 33.333 0.22 0.00 36.29 2.71
4335 4598 8.914011 TCTGTAGCTTAATACTGTATGACACAT 58.086 33.333 0.22 0.00 36.29 3.21
4336 4599 8.288689 TCTGTAGCTTAATACTGTATGACACA 57.711 34.615 0.22 0.73 35.30 3.72
4337 4600 7.863375 CCTCTGTAGCTTAATACTGTATGACAC 59.137 40.741 0.22 0.00 0.00 3.67
4338 4601 7.014326 CCCTCTGTAGCTTAATACTGTATGACA 59.986 40.741 0.22 0.00 0.00 3.58
4339 4602 7.230913 TCCCTCTGTAGCTTAATACTGTATGAC 59.769 40.741 0.22 0.00 0.00 3.06
4340 4603 7.295340 TCCCTCTGTAGCTTAATACTGTATGA 58.705 38.462 0.22 0.00 0.00 2.15
4341 4604 7.231722 ACTCCCTCTGTAGCTTAATACTGTATG 59.768 40.741 0.22 0.00 0.00 2.39
4342 4605 7.299134 ACTCCCTCTGTAGCTTAATACTGTAT 58.701 38.462 0.00 0.00 0.00 2.29
4343 4606 6.670617 ACTCCCTCTGTAGCTTAATACTGTA 58.329 40.000 0.00 0.00 0.00 2.74
4344 4607 5.520751 ACTCCCTCTGTAGCTTAATACTGT 58.479 41.667 0.00 0.00 0.00 3.55
4345 4608 6.999272 TCTACTCCCTCTGTAGCTTAATACTG 59.001 42.308 0.00 0.00 37.78 2.74
4346 4609 7.151694 TCTACTCCCTCTGTAGCTTAATACT 57.848 40.000 0.00 0.00 37.78 2.12
4347 4610 7.820578 TTCTACTCCCTCTGTAGCTTAATAC 57.179 40.000 0.00 0.00 37.78 1.89
4348 4611 8.060075 ACTTTCTACTCCCTCTGTAGCTTAATA 58.940 37.037 0.00 0.00 37.78 0.98
4349 4612 6.898521 ACTTTCTACTCCCTCTGTAGCTTAAT 59.101 38.462 0.00 0.00 37.78 1.40
4350 4613 6.254522 ACTTTCTACTCCCTCTGTAGCTTAA 58.745 40.000 0.00 0.00 37.78 1.85
4351 4614 5.828871 ACTTTCTACTCCCTCTGTAGCTTA 58.171 41.667 0.00 0.00 37.78 3.09
4352 4615 4.679331 ACTTTCTACTCCCTCTGTAGCTT 58.321 43.478 0.00 0.00 37.78 3.74
4353 4616 4.325084 ACTTTCTACTCCCTCTGTAGCT 57.675 45.455 0.00 0.00 37.78 3.32
4354 4617 5.418209 TGTAACTTTCTACTCCCTCTGTAGC 59.582 44.000 0.00 0.00 37.78 3.58
4355 4618 7.463961 TTGTAACTTTCTACTCCCTCTGTAG 57.536 40.000 0.00 0.00 38.85 2.74
4356 4619 9.710818 ATATTGTAACTTTCTACTCCCTCTGTA 57.289 33.333 0.00 0.00 0.00 2.74
4357 4620 6.936968 ATTGTAACTTTCTACTCCCTCTGT 57.063 37.500 0.00 0.00 0.00 3.41
4358 4621 8.919145 AGATATTGTAACTTTCTACTCCCTCTG 58.081 37.037 0.00 0.00 0.00 3.35
4359 4622 8.919145 CAGATATTGTAACTTTCTACTCCCTCT 58.081 37.037 0.00 0.00 0.00 3.69
4360 4623 8.145122 CCAGATATTGTAACTTTCTACTCCCTC 58.855 40.741 0.00 0.00 0.00 4.30
4361 4624 7.624077 ACCAGATATTGTAACTTTCTACTCCCT 59.376 37.037 0.00 0.00 0.00 4.20
4362 4625 7.793036 ACCAGATATTGTAACTTTCTACTCCC 58.207 38.462 0.00 0.00 0.00 4.30
4386 4649 4.998033 CAGGAAGTTGAGAAAGGACCTTAC 59.002 45.833 7.30 1.26 0.00 2.34
4410 4673 6.316390 ACTCAAACCTTCTTAACACACTTCTG 59.684 38.462 0.00 0.00 0.00 3.02
4442 4705 4.773674 TCCCTGCATTTCATTGAAGAATGT 59.226 37.500 11.03 0.00 40.09 2.71
4448 4711 4.022068 GTCAGTTCCCTGCATTTCATTGAA 60.022 41.667 0.00 0.00 38.66 2.69
4451 4714 3.499338 TGTCAGTTCCCTGCATTTCATT 58.501 40.909 0.00 0.00 38.66 2.57
4571 4834 9.685276 AAACATCAATATAACTGAATGTCTCCA 57.315 29.630 0.00 0.00 0.00 3.86
4615 4878 8.716909 GTTTTCAGTTCCAAAAGAAACAAATCA 58.283 29.630 0.00 0.00 35.85 2.57
4717 4981 2.551270 TCATTTCCAGTCCAGGCTAGT 58.449 47.619 0.00 0.00 0.00 2.57
4783 5047 3.761752 AGTTGGATTTTCGTAACCATGGG 59.238 43.478 18.09 0.00 32.31 4.00
4793 5057 8.810652 TCCAAAAGAATAAAGTTGGATTTTCG 57.189 30.769 0.00 0.00 43.54 3.46
4825 5089 4.718858 TCTGCGTGTTGTAATTGTACAC 57.281 40.909 0.00 8.61 40.00 2.90
4841 5105 4.864633 TCTGCTAGTATTCTCAATCTGCG 58.135 43.478 0.00 0.00 0.00 5.18
4912 5176 1.152963 ACGCTTTCCACCACTGCTT 60.153 52.632 0.00 0.00 0.00 3.91
4930 5194 3.933955 ACAAACAAGTGTACGTGCTTACA 59.066 39.130 4.97 0.00 0.00 2.41
4939 5203 4.806342 AATGACCGACAAACAAGTGTAC 57.194 40.909 0.00 0.00 0.00 2.90
4940 5204 5.358090 TGTAATGACCGACAAACAAGTGTA 58.642 37.500 0.00 0.00 0.00 2.90
4950 5214 5.147330 AGACAGAATTGTAATGACCGACA 57.853 39.130 0.00 0.00 37.76 4.35
4973 5237 1.339055 TGCCGACAGAGAAATGAAGGG 60.339 52.381 0.00 0.00 0.00 3.95
5009 5273 2.181525 CCCCGCCTGCAAAATTCG 59.818 61.111 0.00 0.00 0.00 3.34
5016 5280 3.473647 CTGATCTCCCCGCCTGCA 61.474 66.667 0.00 0.00 0.00 4.41
5035 5299 3.381949 CTCGTGGCAGTTAACTATAGCC 58.618 50.000 22.49 22.49 45.41 3.93
5110 5374 7.895759 ACATTCTCCTTCAGAGCTATAGATTC 58.104 38.462 3.21 0.16 42.90 2.52
5155 5419 2.459934 GGCACAAAGGAGAACAAAACG 58.540 47.619 0.00 0.00 0.00 3.60
5191 5455 3.080300 ACACACAGGTTTGGAAACAGA 57.920 42.857 4.71 0.00 44.54 3.41
5259 5535 4.069312 TCTCCCCAACTGGTCTACAATA 57.931 45.455 0.00 0.00 0.00 1.90
5260 5536 2.915869 TCTCCCCAACTGGTCTACAAT 58.084 47.619 0.00 0.00 0.00 2.71
5261 5537 2.409064 TCTCCCCAACTGGTCTACAA 57.591 50.000 0.00 0.00 0.00 2.41
5262 5538 2.409064 TTCTCCCCAACTGGTCTACA 57.591 50.000 0.00 0.00 0.00 2.74
5263 5539 4.302559 AATTTCTCCCCAACTGGTCTAC 57.697 45.455 0.00 0.00 0.00 2.59
5264 5540 4.105697 ACAAATTTCTCCCCAACTGGTCTA 59.894 41.667 0.00 0.00 0.00 2.59
5265 5541 3.117131 ACAAATTTCTCCCCAACTGGTCT 60.117 43.478 0.00 0.00 0.00 3.85
5266 5542 3.230976 ACAAATTTCTCCCCAACTGGTC 58.769 45.455 0.00 0.00 0.00 4.02
5267 5543 3.328535 ACAAATTTCTCCCCAACTGGT 57.671 42.857 0.00 0.00 0.00 4.00
5268 5544 3.387699 ACAACAAATTTCTCCCCAACTGG 59.612 43.478 0.00 0.00 0.00 4.00
5269 5545 4.670896 ACAACAAATTTCTCCCCAACTG 57.329 40.909 0.00 0.00 0.00 3.16
5270 5546 4.962362 AGAACAACAAATTTCTCCCCAACT 59.038 37.500 0.00 0.00 0.00 3.16
5271 5547 5.069119 AGAGAACAACAAATTTCTCCCCAAC 59.931 40.000 7.55 0.00 46.11 3.77
5272 5548 5.068987 CAGAGAACAACAAATTTCTCCCCAA 59.931 40.000 7.55 0.00 46.11 4.12
5273 5549 4.584325 CAGAGAACAACAAATTTCTCCCCA 59.416 41.667 7.55 0.00 46.11 4.96
5274 5550 4.584743 ACAGAGAACAACAAATTTCTCCCC 59.415 41.667 7.55 0.00 46.11 4.81
5275 5551 5.774498 ACAGAGAACAACAAATTTCTCCC 57.226 39.130 7.55 0.00 46.11 4.30
5276 5552 6.564328 ACAACAGAGAACAACAAATTTCTCC 58.436 36.000 7.55 0.00 46.11 3.71
5277 5553 9.736023 AATACAACAGAGAACAACAAATTTCTC 57.264 29.630 3.60 3.60 45.55 2.87
5278 5554 9.520204 CAATACAACAGAGAACAACAAATTTCT 57.480 29.630 0.00 0.00 34.68 2.52
5279 5555 9.301153 ACAATACAACAGAGAACAACAAATTTC 57.699 29.630 0.00 0.00 0.00 2.17
5281 5557 9.950680 CTACAATACAACAGAGAACAACAAATT 57.049 29.630 0.00 0.00 0.00 1.82
5282 5558 9.337396 TCTACAATACAACAGAGAACAACAAAT 57.663 29.630 0.00 0.00 0.00 2.32
5283 5559 8.609176 GTCTACAATACAACAGAGAACAACAAA 58.391 33.333 0.00 0.00 0.00 2.83
5284 5560 7.225931 GGTCTACAATACAACAGAGAACAACAA 59.774 37.037 0.00 0.00 0.00 2.83
5294 5570 4.695455 CCCAACTGGTCTACAATACAACAG 59.305 45.833 0.00 0.00 0.00 3.16
5309 5585 1.271379 ACGAACATTCTCCCCAACTGG 60.271 52.381 0.00 0.00 0.00 4.00
5314 5590 1.189524 ACCGACGAACATTCTCCCCA 61.190 55.000 0.00 0.00 0.00 4.96
5331 5607 1.202371 TCCGTAGATTCATGCGTCACC 60.202 52.381 0.00 0.00 0.00 4.02
5335 5611 2.362397 ACAGATCCGTAGATTCATGCGT 59.638 45.455 0.00 0.00 30.90 5.24
5348 5624 8.246908 TGTACAACAAAATAGTTACAGATCCG 57.753 34.615 0.00 0.00 0.00 4.18
5428 5714 6.618287 TGTCTTTATGTCTTTCACCTTGTG 57.382 37.500 0.00 0.00 34.45 3.33
5429 5715 6.207417 CCATGTCTTTATGTCTTTCACCTTGT 59.793 38.462 0.00 0.00 0.00 3.16
5432 5718 5.880901 ACCATGTCTTTATGTCTTTCACCT 58.119 37.500 0.00 0.00 0.00 4.00
5434 5720 8.352942 AGAAAACCATGTCTTTATGTCTTTCAC 58.647 33.333 0.00 0.00 33.54 3.18
5435 5721 8.352201 CAGAAAACCATGTCTTTATGTCTTTCA 58.648 33.333 0.00 0.00 33.54 2.69
5436 5722 7.327032 GCAGAAAACCATGTCTTTATGTCTTTC 59.673 37.037 11.02 0.00 32.47 2.62
5439 5725 5.183904 GGCAGAAAACCATGTCTTTATGTCT 59.816 40.000 11.02 0.00 28.38 3.41
5440 5726 5.048083 TGGCAGAAAACCATGTCTTTATGTC 60.048 40.000 8.32 8.32 30.88 3.06
5442 5728 5.047802 AGTGGCAGAAAACCATGTCTTTATG 60.048 40.000 6.90 6.90 39.95 1.90
5443 5729 5.079643 AGTGGCAGAAAACCATGTCTTTAT 58.920 37.500 0.00 0.00 39.95 1.40
5444 5730 4.469657 AGTGGCAGAAAACCATGTCTTTA 58.530 39.130 0.00 0.00 39.95 1.85
5445 5731 3.299503 AGTGGCAGAAAACCATGTCTTT 58.700 40.909 0.00 0.00 39.95 2.52
5446 5732 2.949447 AGTGGCAGAAAACCATGTCTT 58.051 42.857 0.00 0.00 39.95 3.01
5463 5749 9.755804 AACGCCATCTTATATGATCATATAGTG 57.244 33.333 26.63 24.25 37.50 2.74
5472 5878 6.998074 TCCAGAAAAACGCCATCTTATATGAT 59.002 34.615 0.00 0.00 0.00 2.45
5473 5879 6.353323 TCCAGAAAAACGCCATCTTATATGA 58.647 36.000 0.00 0.00 0.00 2.15
5553 5960 1.347707 CCTACAAGCTTGGACTGTCCA 59.652 52.381 29.18 25.12 46.61 4.02
5558 5966 2.656947 TTTGCCTACAAGCTTGGACT 57.343 45.000 29.18 12.07 37.04 3.85
5565 5973 3.568538 CTGTGACATTTTGCCTACAAGC 58.431 45.455 0.00 0.00 37.04 4.01
5566 5974 3.612479 GCCTGTGACATTTTGCCTACAAG 60.612 47.826 0.00 0.00 37.04 3.16
5570 5978 1.885887 GTGCCTGTGACATTTTGCCTA 59.114 47.619 0.00 0.00 0.00 3.93
5637 6047 7.890127 AGTTTTTGGATCTGGATTATCTCACAA 59.110 33.333 0.00 0.00 0.00 3.33
5700 6110 0.874175 GTTCCCACTTTTTGCGTGCC 60.874 55.000 0.00 0.00 0.00 5.01
5707 6117 2.884639 CGGTCAGATGTTCCCACTTTTT 59.115 45.455 0.00 0.00 0.00 1.94
5708 6118 2.105821 TCGGTCAGATGTTCCCACTTTT 59.894 45.455 0.00 0.00 0.00 2.27
5846 6260 3.181431 GGTAGGTGTAGGCAGAGGAGATA 60.181 52.174 0.00 0.00 0.00 1.98
5984 6410 1.860078 CGACTGGTTCGGCAAAGAC 59.140 57.895 0.00 0.00 44.60 3.01
6011 6437 3.202906 GGCCTACGATTACATTGCAAGA 58.797 45.455 4.94 0.00 0.00 3.02
6098 6524 0.791983 CTGCGCTGAAAGTTGCATCG 60.792 55.000 9.73 2.61 44.20 3.84
6155 6582 1.480954 GCTGTTGATCCTCTCGGGTTA 59.519 52.381 0.00 0.00 36.25 2.85
6160 6587 1.485397 CATCGCTGTTGATCCTCTCG 58.515 55.000 0.00 0.00 0.00 4.04
6173 6600 7.807977 ATTAGAATACAATTGTTCCATCGCT 57.192 32.000 17.78 8.08 0.00 4.93
6227 6654 9.542462 GCTGTGATATACAATGGAACTAAACTA 57.458 33.333 0.00 0.00 39.20 2.24
6236 6663 6.212187 AGAGCTATGCTGTGATATACAATGGA 59.788 38.462 0.00 0.00 39.88 3.41
6238 6665 7.387122 ACAAGAGCTATGCTGTGATATACAATG 59.613 37.037 0.00 0.00 39.88 2.82
6239 6666 7.448420 ACAAGAGCTATGCTGTGATATACAAT 58.552 34.615 0.00 0.00 39.88 2.71
6241 6668 6.410942 ACAAGAGCTATGCTGTGATATACA 57.589 37.500 0.00 0.00 39.88 2.29
6242 6669 7.721286 AAACAAGAGCTATGCTGTGATATAC 57.279 36.000 0.00 0.00 39.88 1.47
6368 6804 6.480320 GGCACTAGATCGTGTAAATTCTGATT 59.520 38.462 0.00 0.00 37.24 2.57
6369 6805 5.986135 GGCACTAGATCGTGTAAATTCTGAT 59.014 40.000 0.00 0.00 37.24 2.90
6373 6809 3.489785 CCGGCACTAGATCGTGTAAATTC 59.510 47.826 0.00 0.00 37.24 2.17
6375 6811 2.691526 TCCGGCACTAGATCGTGTAAAT 59.308 45.455 0.00 0.00 37.24 1.40
6383 6819 0.747255 TTGCTCTCCGGCACTAGATC 59.253 55.000 0.00 0.00 42.27 2.75
6386 6822 1.464997 GTTTTTGCTCTCCGGCACTAG 59.535 52.381 0.00 0.00 42.27 2.57
6392 6828 3.751175 TGATAACTGTTTTTGCTCTCCGG 59.249 43.478 0.00 0.00 0.00 5.14
6393 6829 5.551760 ATGATAACTGTTTTTGCTCTCCG 57.448 39.130 0.00 0.00 0.00 4.63
6411 6847 4.325028 TGCTCAACAAAGTTGCAATGAT 57.675 36.364 0.59 0.00 0.00 2.45
6412 6848 3.797451 TGCTCAACAAAGTTGCAATGA 57.203 38.095 0.59 0.00 0.00 2.57
6421 6857 0.675633 CCACCCCTTGCTCAACAAAG 59.324 55.000 0.00 0.00 37.96 2.77
6424 6865 2.520458 CCCACCCCTTGCTCAACA 59.480 61.111 0.00 0.00 0.00 3.33
6437 6878 3.225798 TGCTGCTGTTTGGCCCAC 61.226 61.111 0.00 0.00 0.00 4.61
6440 6881 0.461693 TTTTGTGCTGCTGTTTGGCC 60.462 50.000 0.00 0.00 0.00 5.36
6442 6883 1.660104 GTGTTTTGTGCTGCTGTTTGG 59.340 47.619 0.00 0.00 0.00 3.28
6444 6885 1.627879 CGTGTTTTGTGCTGCTGTTT 58.372 45.000 0.00 0.00 0.00 2.83
6449 6890 0.801836 AGTTGCGTGTTTTGTGCTGC 60.802 50.000 0.00 0.00 0.00 5.25
6450 6891 0.915904 CAGTTGCGTGTTTTGTGCTG 59.084 50.000 0.00 0.00 0.00 4.41
6454 6895 2.983803 GTTGTTCAGTTGCGTGTTTTGT 59.016 40.909 0.00 0.00 0.00 2.83
6455 6896 3.059306 CAGTTGTTCAGTTGCGTGTTTTG 59.941 43.478 0.00 0.00 0.00 2.44
6463 6904 8.936864 ACTAGTATATTTCAGTTGTTCAGTTGC 58.063 33.333 0.00 0.00 0.00 4.17
6483 6924 9.605275 TTTCGCTGAACTTATCTACTACTAGTA 57.395 33.333 1.89 1.89 0.00 1.82
6484 6925 8.503458 TTTCGCTGAACTTATCTACTACTAGT 57.497 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.