Multiple sequence alignment - TraesCS7D01G194600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G194600 chr7D 100.000 5244 0 0 1 5244 151313429 151318672 0.000000e+00 9684.0
1 TraesCS7D01G194600 chr7D 97.500 240 4 1 2668 2907 151315357 151315120 4.890000e-110 409.0
2 TraesCS7D01G194600 chr7D 97.917 48 1 0 1 48 533177629 533177676 3.370000e-12 84.2
3 TraesCS7D01G194600 chr7B 85.392 1376 130 39 2925 4257 113196348 113197695 0.000000e+00 1362.0
4 TraesCS7D01G194600 chr7B 90.041 974 47 14 729 1686 113195366 113196305 0.000000e+00 1216.0
5 TraesCS7D01G194600 chr7B 89.014 801 71 8 4459 5244 113197982 113198780 0.000000e+00 976.0
6 TraesCS7D01G194600 chr7B 85.917 703 69 13 43 736 113193828 113194509 0.000000e+00 723.0
7 TraesCS7D01G194600 chr7A 91.922 978 36 17 734 1686 150987197 150988156 0.000000e+00 1328.0
8 TraesCS7D01G194600 chr7A 93.647 787 48 2 4459 5244 150989608 150990393 0.000000e+00 1175.0
9 TraesCS7D01G194600 chr7A 87.267 966 64 23 3346 4284 150988567 150989500 0.000000e+00 1048.0
10 TraesCS7D01G194600 chr7A 85.507 138 12 4 4317 4448 150989503 150989638 2.550000e-28 137.0
11 TraesCS7D01G194600 chr7A 95.775 71 3 0 1612 1682 107668401 107668331 1.190000e-21 115.0
12 TraesCS7D01G194600 chr7A 95.775 71 3 0 1612 1682 652373917 652373987 1.190000e-21 115.0
13 TraesCS7D01G194600 chr3B 93.893 655 22 9 1933 2586 50039088 50038451 0.000000e+00 972.0
14 TraesCS7D01G194600 chr3B 92.857 532 17 8 2054 2579 49863317 49863833 0.000000e+00 752.0
15 TraesCS7D01G194600 chr3B 82.595 655 82 13 1937 2586 50034314 50033687 2.760000e-152 549.0
16 TraesCS7D01G194600 chr3B 97.143 70 1 1 2585 2654 120404869 120404937 3.320000e-22 117.0
17 TraesCS7D01G194600 chr3A 96.014 577 23 0 2003 2579 38658159 38657583 0.000000e+00 939.0
18 TraesCS7D01G194600 chr3A 81.211 644 86 16 1937 2579 38628827 38628218 2.200000e-133 486.0
19 TraesCS7D01G194600 chr3A 83.562 219 28 4 2915 3133 733312253 733312463 1.150000e-46 198.0
20 TraesCS7D01G194600 chr3A 94.366 71 4 0 1612 1682 22386206 22386136 5.550000e-20 110.0
21 TraesCS7D01G194600 chr3A 97.826 46 1 0 2609 2654 88189868 88189823 4.350000e-11 80.5
22 TraesCS7D01G194600 chr3D 94.417 609 5 12 1693 2299 6154129 6154710 0.000000e+00 909.0
23 TraesCS7D01G194600 chr3D 98.745 239 3 0 2668 2906 6154367 6154129 4.850000e-115 425.0
24 TraesCS7D01G194600 chr3D 99.156 237 0 1 1691 1925 6154941 6154705 4.850000e-115 425.0
25 TraesCS7D01G194600 chr3D 98.305 236 4 0 2672 2907 6154705 6154940 1.050000e-111 414.0
26 TraesCS7D01G194600 chr3D 83.846 260 34 4 2915 3174 63801528 63801779 1.890000e-59 241.0
27 TraesCS7D01G194600 chr3D 97.143 70 1 1 2585 2654 74760621 74760689 3.320000e-22 117.0
28 TraesCS7D01G194600 chr3D 97.917 48 1 0 1 48 54952073 54952120 3.370000e-12 84.2
29 TraesCS7D01G194600 chr1D 98.496 399 6 0 2510 2908 7591226 7591624 0.000000e+00 704.0
30 TraesCS7D01G194600 chr1D 98.750 240 1 1 1692 1929 7591623 7591384 4.850000e-115 425.0
31 TraesCS7D01G194600 chr1D 84.231 260 33 5 2915 3174 330031268 330031017 4.060000e-61 246.0
32 TraesCS7D01G194600 chr1D 100.000 44 0 0 1 44 322096152 322096195 1.210000e-11 82.4
33 TraesCS7D01G194600 chrUn 98.333 240 2 1 1689 1926 21561155 21560916 2.260000e-113 420.0
34 TraesCS7D01G194600 chrUn 98.326 239 4 0 2668 2906 29858364 29858602 2.260000e-113 420.0
35 TraesCS7D01G194600 chrUn 98.326 239 2 1 1693 1929 21560239 21560477 8.120000e-113 418.0
36 TraesCS7D01G194600 chrUn 97.154 246 3 2 1693 1936 29858602 29858359 3.780000e-111 412.0
37 TraesCS7D01G194600 chrUn 97.490 239 6 0 2668 2906 21560477 21560239 4.890000e-110 409.0
38 TraesCS7D01G194600 chrUn 97.881 236 5 0 2671 2906 21560916 21561151 4.890000e-110 409.0
39 TraesCS7D01G194600 chrUn 95.775 71 3 0 1612 1682 468338711 468338641 1.190000e-21 115.0
40 TraesCS7D01G194600 chr4D 97.561 246 2 2 1693 1936 381562376 381562133 8.120000e-113 418.0
41 TraesCS7D01G194600 chr4D 98.305 236 2 1 1693 1926 381561450 381561685 3.780000e-111 412.0
42 TraesCS7D01G194600 chr4D 97.881 236 5 0 2671 2906 381561685 381561450 4.890000e-110 409.0
43 TraesCS7D01G194600 chr4D 97.490 239 6 0 2668 2906 381562138 381562376 4.890000e-110 409.0
44 TraesCS7D01G194600 chr4D 77.169 657 101 33 1933 2570 81393575 81394201 2.340000e-88 337.0
45 TraesCS7D01G194600 chr4D 100.000 46 0 0 1 46 345428662 345428707 9.360000e-13 86.1
46 TraesCS7D01G194600 chr2D 97.154 246 3 2 1693 1936 103134216 103133973 3.780000e-111 412.0
47 TraesCS7D01G194600 chr2D 94.118 51 3 0 1 51 23367773 23367823 1.570000e-10 78.7
48 TraesCS7D01G194600 chr6A 84.231 260 35 5 2915 3174 167179976 167180229 1.130000e-61 248.0
49 TraesCS7D01G194600 chr6A 82.642 265 32 7 2915 3174 118182102 118182357 6.840000e-54 222.0
50 TraesCS7D01G194600 chr5D 83.846 260 34 4 2915 3174 326029900 326030151 1.890000e-59 241.0
51 TraesCS7D01G194600 chr5D 100.000 44 0 0 1 44 405576506 405576549 1.210000e-11 82.4
52 TraesCS7D01G194600 chr5D 100.000 44 0 0 1 44 536449454 536449411 1.210000e-11 82.4
53 TraesCS7D01G194600 chr5D 97.826 46 1 0 1 46 313170751 313170706 4.350000e-11 80.5
54 TraesCS7D01G194600 chr5A 83.846 260 34 4 2915 3174 660302438 660302689 1.890000e-59 241.0
55 TraesCS7D01G194600 chr2A 83.846 260 34 4 2915 3174 63680264 63680515 1.890000e-59 241.0
56 TraesCS7D01G194600 chr4A 83.462 260 35 4 2915 3174 216407022 216406771 8.780000e-58 235.0
57 TraesCS7D01G194600 chr4B 95.775 71 3 0 1612 1682 154977934 154977864 1.190000e-21 115.0
58 TraesCS7D01G194600 chr5B 94.366 71 4 0 1612 1682 531179832 531179762 5.550000e-20 110.0
59 TraesCS7D01G194600 chr6D 100.000 43 0 0 1 43 111217125 111217167 4.350000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G194600 chr7D 151313429 151318672 5243 False 9684.00 9684 100.00000 1 5244 1 chr7D.!!$F1 5243
1 TraesCS7D01G194600 chr7B 113193828 113198780 4952 False 1069.25 1362 87.59100 43 5244 4 chr7B.!!$F1 5201
2 TraesCS7D01G194600 chr7A 150987197 150990393 3196 False 922.00 1328 89.58575 734 5244 4 chr7A.!!$F2 4510
3 TraesCS7D01G194600 chr3B 50038451 50039088 637 True 972.00 972 93.89300 1933 2586 1 chr3B.!!$R2 653
4 TraesCS7D01G194600 chr3B 49863317 49863833 516 False 752.00 752 92.85700 2054 2579 1 chr3B.!!$F1 525
5 TraesCS7D01G194600 chr3B 50033687 50034314 627 True 549.00 549 82.59500 1937 2586 1 chr3B.!!$R1 649
6 TraesCS7D01G194600 chr3A 38657583 38658159 576 True 939.00 939 96.01400 2003 2579 1 chr3A.!!$R3 576
7 TraesCS7D01G194600 chr3A 38628218 38628827 609 True 486.00 486 81.21100 1937 2579 1 chr3A.!!$R2 642
8 TraesCS7D01G194600 chr3D 6154129 6154940 811 False 661.50 909 96.36100 1693 2907 2 chr3D.!!$F4 1214
9 TraesCS7D01G194600 chr3D 6154129 6154941 812 True 425.00 425 98.95050 1691 2906 2 chr3D.!!$R1 1215
10 TraesCS7D01G194600 chrUn 21560239 21561155 916 True 414.50 420 97.91150 1689 2906 2 chrUn.!!$R3 1217
11 TraesCS7D01G194600 chrUn 21560239 21561151 912 False 413.50 418 98.10350 1693 2906 2 chrUn.!!$F2 1213
12 TraesCS7D01G194600 chr4D 381561450 381562376 926 True 413.50 418 97.72100 1693 2906 2 chr4D.!!$R1 1213
13 TraesCS7D01G194600 chr4D 381561450 381562376 926 False 410.50 412 97.89750 1693 2906 2 chr4D.!!$F3 1213
14 TraesCS7D01G194600 chr4D 81393575 81394201 626 False 337.00 337 77.16900 1933 2570 1 chr4D.!!$F1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 543 0.179100 ATGTGGAGAGTGGCGATTCG 60.179 55.000 0.62 0.62 0.00 3.34 F
575 578 0.882484 TTGCATCTCGGCGTGAACAA 60.882 50.000 16.03 18.36 36.28 2.83 F
1447 2370 1.004918 GGGTGTTCAGGACGGACAG 60.005 63.158 0.00 0.00 0.00 3.51 F
2913 4493 0.448990 TGCAATTGACTCGATGCTGC 59.551 50.000 10.34 0.00 39.49 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 2609 0.385849 CTTGCAATTGACTCGCGCAA 60.386 50.000 10.34 0.0 40.08 4.85 R
2633 4181 2.892425 CGGCTGTTCATCGGGCTC 60.892 66.667 0.00 0.0 44.51 4.70 R
3102 4693 0.613012 ATCAACAGGAAGGGCAAGGC 60.613 55.000 0.00 0.0 0.00 4.35 R
4395 6175 0.245539 GGGAGAATGTTCGTCGGTGA 59.754 55.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.192175 CCATCCTGGGCGGGTTAC 59.808 66.667 0.00 0.00 32.67 2.50
21 22 2.675242 CCATCCTGGGCGGGTTACA 61.675 63.158 0.00 0.00 32.67 2.41
22 23 1.451387 CATCCTGGGCGGGTTACAC 60.451 63.158 0.00 0.00 0.00 2.90
23 24 2.676265 ATCCTGGGCGGGTTACACC 61.676 63.158 0.00 0.00 37.60 4.16
24 25 3.642503 CCTGGGCGGGTTACACCA 61.643 66.667 0.00 0.00 41.02 4.17
25 26 2.046314 CTGGGCGGGTTACACCAG 60.046 66.667 0.00 0.00 43.87 4.00
26 27 2.850130 TGGGCGGGTTACACCAGT 60.850 61.111 0.00 0.00 41.02 4.00
27 28 1.535930 TGGGCGGGTTACACCAGTA 60.536 57.895 0.00 0.00 41.02 2.74
28 29 1.219935 GGGCGGGTTACACCAGTAG 59.780 63.158 0.00 0.00 41.02 2.57
29 30 1.449070 GGCGGGTTACACCAGTAGC 60.449 63.158 0.00 0.00 41.02 3.58
30 31 1.595357 GCGGGTTACACCAGTAGCT 59.405 57.895 0.00 0.00 41.02 3.32
31 32 0.819582 GCGGGTTACACCAGTAGCTA 59.180 55.000 0.00 0.00 41.02 3.32
32 33 1.411612 GCGGGTTACACCAGTAGCTAT 59.588 52.381 0.00 0.00 41.02 2.97
33 34 2.624838 GCGGGTTACACCAGTAGCTATA 59.375 50.000 0.00 0.00 41.02 1.31
34 35 3.257624 GCGGGTTACACCAGTAGCTATAT 59.742 47.826 0.00 0.00 41.02 0.86
35 36 4.617762 GCGGGTTACACCAGTAGCTATATC 60.618 50.000 0.00 0.00 41.02 1.63
36 37 4.082354 CGGGTTACACCAGTAGCTATATCC 60.082 50.000 0.00 0.00 41.02 2.59
37 38 5.085219 GGGTTACACCAGTAGCTATATCCT 58.915 45.833 0.00 0.00 41.02 3.24
38 39 5.185442 GGGTTACACCAGTAGCTATATCCTC 59.815 48.000 0.00 0.00 41.02 3.71
39 40 5.773680 GGTTACACCAGTAGCTATATCCTCA 59.226 44.000 0.00 0.00 38.42 3.86
40 41 6.267014 GGTTACACCAGTAGCTATATCCTCAA 59.733 42.308 0.00 0.00 38.42 3.02
41 42 5.793030 ACACCAGTAGCTATATCCTCAAC 57.207 43.478 0.00 0.00 0.00 3.18
42 43 5.208890 ACACCAGTAGCTATATCCTCAACA 58.791 41.667 0.00 0.00 0.00 3.33
43 44 5.661312 ACACCAGTAGCTATATCCTCAACAA 59.339 40.000 0.00 0.00 0.00 2.83
44 45 6.156256 ACACCAGTAGCTATATCCTCAACAAA 59.844 38.462 0.00 0.00 0.00 2.83
45 46 7.047891 CACCAGTAGCTATATCCTCAACAAAA 58.952 38.462 0.00 0.00 0.00 2.44
46 47 7.552687 CACCAGTAGCTATATCCTCAACAAAAA 59.447 37.037 0.00 0.00 0.00 1.94
47 48 7.553044 ACCAGTAGCTATATCCTCAACAAAAAC 59.447 37.037 0.00 0.00 0.00 2.43
48 49 7.012421 CCAGTAGCTATATCCTCAACAAAAACC 59.988 40.741 0.00 0.00 0.00 3.27
49 50 7.012421 CAGTAGCTATATCCTCAACAAAAACCC 59.988 40.741 0.00 0.00 0.00 4.11
50 51 6.079712 AGCTATATCCTCAACAAAAACCCT 57.920 37.500 0.00 0.00 0.00 4.34
51 52 7.208064 AGCTATATCCTCAACAAAAACCCTA 57.792 36.000 0.00 0.00 0.00 3.53
52 53 7.639378 AGCTATATCCTCAACAAAAACCCTAA 58.361 34.615 0.00 0.00 0.00 2.69
53 54 7.775561 AGCTATATCCTCAACAAAAACCCTAAG 59.224 37.037 0.00 0.00 0.00 2.18
54 55 7.773690 GCTATATCCTCAACAAAAACCCTAAGA 59.226 37.037 0.00 0.00 0.00 2.10
66 67 6.726490 AAAACCCTAAGAAAAACTCCTTCC 57.274 37.500 0.00 0.00 0.00 3.46
92 93 5.376854 TTGTAGTCCTACGAACCTAACAC 57.623 43.478 0.00 0.00 38.85 3.32
93 94 4.397420 TGTAGTCCTACGAACCTAACACA 58.603 43.478 0.00 0.00 38.85 3.72
107 108 5.570320 ACCTAACACAAGCAATGTAGGAAT 58.430 37.500 13.78 0.00 41.46 3.01
187 188 6.246449 CAGCTCTGTATTCAAGAACAAATCG 58.754 40.000 0.00 0.00 0.00 3.34
194 195 8.279970 TGTATTCAAGAACAAATCGGATCAAT 57.720 30.769 0.00 0.00 0.00 2.57
197 198 5.009631 TCAAGAACAAATCGGATCAATGGT 58.990 37.500 0.00 0.00 0.00 3.55
221 222 5.164620 TCAATATTGTGGCTTCTCACTCA 57.835 39.130 14.97 0.00 38.40 3.41
222 223 5.748402 TCAATATTGTGGCTTCTCACTCAT 58.252 37.500 14.97 0.00 38.40 2.90
225 226 7.443272 TCAATATTGTGGCTTCTCACTCATATG 59.557 37.037 14.97 0.00 38.40 1.78
226 227 2.910199 TGTGGCTTCTCACTCATATGC 58.090 47.619 0.00 0.00 38.40 3.14
227 228 2.236893 TGTGGCTTCTCACTCATATGCA 59.763 45.455 0.00 0.00 38.40 3.96
228 229 3.273434 GTGGCTTCTCACTCATATGCAA 58.727 45.455 0.00 0.00 34.98 4.08
243 245 9.790344 ACTCATATGCAATAGCTTCTTCTTTAT 57.210 29.630 0.00 0.00 42.74 1.40
256 258 9.899226 AGCTTCTTCTTTATACAAAAACATGTC 57.101 29.630 0.00 0.00 34.75 3.06
260 262 8.511321 TCTTCTTTATACAAAAACATGTCGCAT 58.489 29.630 0.00 0.00 34.75 4.73
280 282 8.586273 GTCGCATAAAGAAAACACGTACTATTA 58.414 33.333 0.00 0.00 0.00 0.98
281 283 9.304731 TCGCATAAAGAAAACACGTACTATTAT 57.695 29.630 0.00 0.00 0.00 1.28
309 311 2.702270 AGATGTTTCTTGGGCCCTTT 57.298 45.000 25.70 0.00 0.00 3.11
322 324 3.576550 TGGGCCCTTTAATCAGAAAACAC 59.423 43.478 25.70 0.00 0.00 3.32
323 325 3.366985 GGGCCCTTTAATCAGAAAACACG 60.367 47.826 17.04 0.00 0.00 4.49
324 326 3.254903 GGCCCTTTAATCAGAAAACACGT 59.745 43.478 0.00 0.00 0.00 4.49
325 327 4.456566 GGCCCTTTAATCAGAAAACACGTA 59.543 41.667 0.00 0.00 0.00 3.57
326 328 5.124936 GGCCCTTTAATCAGAAAACACGTAT 59.875 40.000 0.00 0.00 0.00 3.06
327 329 6.349860 GGCCCTTTAATCAGAAAACACGTATT 60.350 38.462 0.00 0.00 0.00 1.89
328 330 7.148205 GGCCCTTTAATCAGAAAACACGTATTA 60.148 37.037 0.00 0.00 0.00 0.98
329 331 8.238631 GCCCTTTAATCAGAAAACACGTATTAA 58.761 33.333 0.00 0.00 0.00 1.40
374 376 3.758554 ACCTACCAGCAACATGAAACATC 59.241 43.478 0.00 0.00 0.00 3.06
382 384 3.305335 GCAACATGAAACATCGGGTTCTT 60.305 43.478 0.00 0.00 39.29 2.52
407 410 1.412710 CTTAGCCAGAACCCTGCGATA 59.587 52.381 0.00 0.00 39.07 2.92
412 415 3.003480 GCCAGAACCCTGCGATATTATC 58.997 50.000 0.00 0.00 39.07 1.75
431 434 2.383527 GCCGACCGCTCAAGTTGAG 61.384 63.158 25.68 25.68 46.90 3.02
466 469 7.771361 CGTCTGAGATGAGTAGGTATATATGGT 59.229 40.741 0.00 0.00 0.00 3.55
473 476 9.862371 GATGAGTAGGTATATATGGTTCTTGTG 57.138 37.037 0.00 0.00 0.00 3.33
475 478 7.005709 AGTAGGTATATATGGTTCTTGTGCC 57.994 40.000 0.00 0.00 0.00 5.01
502 505 4.327898 CCATTGGCAAAATGATCTTTGACG 59.672 41.667 3.01 0.00 45.73 4.35
525 528 9.498307 GACGGTTTTTAATAGGAACATTATGTG 57.502 33.333 0.00 0.00 0.00 3.21
540 543 0.179100 ATGTGGAGAGTGGCGATTCG 60.179 55.000 0.62 0.62 0.00 3.34
541 544 1.248101 TGTGGAGAGTGGCGATTCGA 61.248 55.000 10.88 0.00 0.00 3.71
575 578 0.882484 TTGCATCTCGGCGTGAACAA 60.882 50.000 16.03 18.36 36.28 2.83
619 622 7.810766 TCTTTTGATCCAAATTAATTGACGC 57.189 32.000 0.39 0.00 41.85 5.19
620 623 7.374272 TCTTTTGATCCAAATTAATTGACGCA 58.626 30.769 0.39 0.00 41.85 5.24
623 626 6.507958 TGATCCAAATTAATTGACGCAGAA 57.492 33.333 0.39 0.00 41.85 3.02
624 627 6.554419 TGATCCAAATTAATTGACGCAGAAG 58.446 36.000 0.39 0.00 41.85 2.85
625 628 4.732784 TCCAAATTAATTGACGCAGAAGC 58.267 39.130 0.39 0.00 41.85 3.86
650 658 4.157849 AGGAGGGAGTAGCAAAATTAGC 57.842 45.455 0.00 0.00 0.00 3.09
654 662 4.464947 AGGGAGTAGCAAAATTAGCATCC 58.535 43.478 5.70 8.60 33.34 3.51
656 664 4.127171 GGAGTAGCAAAATTAGCATCCGA 58.873 43.478 5.70 0.00 0.00 4.55
705 713 5.577945 AGACACAAGATGTTTGCACAAAAAG 59.422 36.000 0.00 0.00 43.56 2.27
706 714 4.630940 ACACAAGATGTTTGCACAAAAAGG 59.369 37.500 0.00 0.00 38.98 3.11
723 731 6.477360 ACAAAAAGGTGGTGTTTAAATTAGCG 59.523 34.615 0.00 0.00 0.00 4.26
727 735 3.425227 GGTGGTGTTTAAATTAGCGTCCG 60.425 47.826 0.00 0.00 0.00 4.79
730 738 4.514441 TGGTGTTTAAATTAGCGTCCGAAA 59.486 37.500 0.00 0.00 0.00 3.46
731 739 5.084055 GGTGTTTAAATTAGCGTCCGAAAG 58.916 41.667 0.00 0.00 0.00 2.62
732 740 5.106987 GGTGTTTAAATTAGCGTCCGAAAGA 60.107 40.000 0.00 0.00 0.00 2.52
733 741 6.402875 GGTGTTTAAATTAGCGTCCGAAAGAT 60.403 38.462 0.00 0.00 0.00 2.40
734 742 6.681599 GTGTTTAAATTAGCGTCCGAAAGATC 59.318 38.462 0.00 0.00 0.00 2.75
753 1624 3.371102 TCGAGTTCAGGTGAAGACTTG 57.629 47.619 0.00 0.00 34.27 3.16
824 1695 1.055849 GGAAAAGGCCCACCACATTT 58.944 50.000 0.00 0.00 39.06 2.32
931 1810 3.426568 GTGTTCAGCAGCGAGGGC 61.427 66.667 0.00 0.00 40.37 5.19
1274 2167 3.797353 CACGCCACCCAGCCCTAT 61.797 66.667 0.00 0.00 0.00 2.57
1275 2168 3.797353 ACGCCACCCAGCCCTATG 61.797 66.667 0.00 0.00 0.00 2.23
1276 2169 3.479203 CGCCACCCAGCCCTATGA 61.479 66.667 0.00 0.00 0.00 2.15
1277 2170 2.193248 GCCACCCAGCCCTATGAC 59.807 66.667 0.00 0.00 0.00 3.06
1278 2171 2.919043 CCACCCAGCCCTATGACC 59.081 66.667 0.00 0.00 0.00 4.02
1401 2324 1.987770 GCTTGTGATGGCGAATTGTTG 59.012 47.619 0.00 0.00 0.00 3.33
1447 2370 1.004918 GGGTGTTCAGGACGGACAG 60.005 63.158 0.00 0.00 0.00 3.51
1511 2434 4.814294 CCGTACCTGCGGCTGGTC 62.814 72.222 31.14 21.33 45.47 4.02
1599 2522 3.573695 GGCTCCACTGGTTAGTATCCTA 58.426 50.000 0.00 0.00 34.74 2.94
1601 2524 4.221041 GGCTCCACTGGTTAGTATCCTATC 59.779 50.000 0.00 0.00 34.74 2.08
1602 2525 4.221041 GCTCCACTGGTTAGTATCCTATCC 59.779 50.000 0.00 0.00 34.74 2.59
1609 2532 4.673132 TGGTTAGTATCCTATCCTCCTCCA 59.327 45.833 0.00 0.00 35.07 3.86
1678 2601 6.876257 AGATTTTTCTGACAGGTTACTAGCAG 59.124 38.462 1.81 0.00 0.00 4.24
1686 2609 3.578716 ACAGGTTACTAGCAGTGTGATGT 59.421 43.478 0.00 0.00 0.00 3.06
2581 4129 3.710722 AGCTGCTCCGTCCCCAAG 61.711 66.667 0.00 0.00 0.00 3.61
2646 4194 4.812476 CCGCGAGCCCGATGAACA 62.812 66.667 8.23 0.00 38.22 3.18
2649 4197 2.892425 CGAGCCCGATGAACAGCC 60.892 66.667 0.00 0.00 38.22 4.85
2650 4198 2.892425 GAGCCCGATGAACAGCCG 60.892 66.667 0.00 0.00 0.00 5.52
2656 4204 3.195698 GATGAACAGCCGCGGGTC 61.196 66.667 30.00 17.61 0.00 4.46
2657 4205 4.778143 ATGAACAGCCGCGGGTCC 62.778 66.667 30.00 19.48 0.00 4.46
2662 4210 4.473520 CAGCCGCGGGTCCTGATT 62.474 66.667 30.00 0.00 0.00 2.57
2663 4211 4.473520 AGCCGCGGGTCCTGATTG 62.474 66.667 26.97 0.00 0.00 2.67
2666 4214 4.856801 CGCGGGTCCTGATTGGGG 62.857 72.222 0.31 0.00 36.20 4.96
2788 4368 2.296073 TTAAACGGGCCAAATCACCT 57.704 45.000 4.39 0.00 0.00 4.00
2907 4487 3.003275 GTGGTTTCTTGCAATTGACTCGA 59.997 43.478 10.34 0.00 0.00 4.04
2908 4488 3.820467 TGGTTTCTTGCAATTGACTCGAT 59.180 39.130 10.34 0.00 0.00 3.59
2909 4489 4.161333 GGTTTCTTGCAATTGACTCGATG 58.839 43.478 10.34 0.00 0.00 3.84
2910 4490 3.476295 TTCTTGCAATTGACTCGATGC 57.524 42.857 10.34 0.00 39.22 3.91
2911 4491 2.703416 TCTTGCAATTGACTCGATGCT 58.297 42.857 10.34 0.00 39.49 3.79
2912 4492 2.417586 TCTTGCAATTGACTCGATGCTG 59.582 45.455 10.34 1.97 39.49 4.41
2913 4493 0.448990 TGCAATTGACTCGATGCTGC 59.551 50.000 10.34 0.00 39.49 5.25
2949 4538 3.431346 GCAAGTAGCATCACCTCAGATGA 60.431 47.826 8.03 0.00 46.51 2.92
2981 4570 5.163612 GCTTTAAGGGTGAATTCCTGTCATC 60.164 44.000 2.27 0.00 34.34 2.92
2989 4578 4.639310 GTGAATTCCTGTCATCTTCTGCAT 59.361 41.667 2.27 0.00 0.00 3.96
2993 4582 7.558807 TGAATTCCTGTCATCTTCTGCATAATT 59.441 33.333 2.27 0.00 0.00 1.40
2998 4587 8.435187 TCCTGTCATCTTCTGCATAATTCTAAT 58.565 33.333 0.00 0.00 0.00 1.73
3046 4635 9.574516 AGAGTTGGTTTTTATTTCAGTACATCT 57.425 29.630 0.00 0.00 0.00 2.90
3102 4693 4.916983 TTTATGAATTGGGAGCCGATTG 57.083 40.909 0.00 0.00 37.71 2.67
3114 4705 2.418083 CCGATTGCCTTGCCCTTCC 61.418 63.158 0.00 0.00 0.00 3.46
3139 4730 6.768483 TGTTGATTCTTATGAGTCAGGTCAA 58.232 36.000 0.00 0.51 39.52 3.18
3145 4736 5.559770 TCTTATGAGTCAGGTCAATTGCAA 58.440 37.500 0.00 0.00 0.00 4.08
3146 4737 5.645067 TCTTATGAGTCAGGTCAATTGCAAG 59.355 40.000 4.94 0.00 0.00 4.01
3174 4772 3.055094 TCTTTAGCTAGGCTTGTGAAGGG 60.055 47.826 0.00 0.00 40.44 3.95
3178 4776 1.555533 GCTAGGCTTGTGAAGGGTAGT 59.444 52.381 0.00 0.00 0.00 2.73
3208 4806 6.543465 CACCCTGCTTATAATTGAACTCATCA 59.457 38.462 0.00 0.00 35.85 3.07
3224 4823 5.766222 ACTCATCAATGCTTCACTTGTTTC 58.234 37.500 0.00 0.00 0.00 2.78
3238 4837 6.452242 TCACTTGTTTCGCTGAACTTATCTA 58.548 36.000 1.59 0.00 0.00 1.98
3239 4838 6.365247 TCACTTGTTTCGCTGAACTTATCTAC 59.635 38.462 1.59 0.00 0.00 2.59
3240 4839 6.366332 CACTTGTTTCGCTGAACTTATCTACT 59.634 38.462 1.59 0.00 0.00 2.57
3241 4840 7.541091 CACTTGTTTCGCTGAACTTATCTACTA 59.459 37.037 1.59 0.00 0.00 1.82
3242 4841 7.541437 ACTTGTTTCGCTGAACTTATCTACTAC 59.459 37.037 1.59 0.00 0.00 2.73
3244 4843 8.272545 TGTTTCGCTGAACTTATCTACTACTA 57.727 34.615 1.59 0.00 0.00 1.82
3245 4844 8.396390 TGTTTCGCTGAACTTATCTACTACTAG 58.604 37.037 0.00 0.00 0.00 2.57
3246 4845 8.397148 GTTTCGCTGAACTTATCTACTACTAGT 58.603 37.037 0.00 0.00 0.00 2.57
3247 4846 9.605275 TTTCGCTGAACTTATCTACTACTAGTA 57.395 33.333 1.89 1.89 0.00 1.82
3267 4873 8.936864 ACTAGTATATTTCAGTTGTTCAGTTGC 58.063 33.333 0.00 0.00 0.00 4.17
3275 4881 3.059306 CAGTTGTTCAGTTGCGTGTTTTG 59.941 43.478 0.00 0.00 0.00 2.44
3280 4886 0.915904 CAGTTGCGTGTTTTGTGCTG 59.084 50.000 0.00 0.00 0.00 4.41
3281 4887 0.801836 AGTTGCGTGTTTTGTGCTGC 60.802 50.000 0.00 0.00 0.00 5.25
3293 4899 3.225798 TGCTGCTGTTTGGCCCAC 61.226 61.111 0.00 0.00 0.00 4.61
3306 4912 2.520458 CCCACCCCTTGCTCAACA 59.480 61.111 0.00 0.00 0.00 3.33
3309 4915 0.675633 CCACCCCTTGCTCAACAAAG 59.324 55.000 0.00 0.00 37.96 2.77
3318 4929 3.797451 TGCTCAACAAAGTTGCAATGA 57.203 38.095 0.59 0.00 0.00 2.57
3337 4948 5.551760 ATGATAACTGTTTTTGCTCTCCG 57.448 39.130 0.00 0.00 0.00 4.63
3338 4949 3.751175 TGATAACTGTTTTTGCTCTCCGG 59.249 43.478 0.00 0.00 0.00 5.14
3344 4955 1.464997 GTTTTTGCTCTCCGGCACTAG 59.535 52.381 0.00 0.00 42.27 2.57
3347 4958 0.747255 TTGCTCTCCGGCACTAGATC 59.253 55.000 0.00 0.00 42.27 2.75
3355 4966 2.691526 TCCGGCACTAGATCGTGTAAAT 59.308 45.455 0.00 0.00 37.24 1.40
3357 4968 3.489785 CCGGCACTAGATCGTGTAAATTC 59.510 47.826 0.00 0.00 37.24 2.17
3361 4972 5.986135 GGCACTAGATCGTGTAAATTCTGAT 59.014 40.000 0.00 0.00 37.24 2.90
3362 4973 6.480320 GGCACTAGATCGTGTAAATTCTGATT 59.520 38.462 0.00 0.00 37.24 2.57
3481 5110 7.917505 GCAAATTATAAACAAGAGCTATGCTGT 59.082 33.333 0.00 0.00 39.88 4.40
3489 5118 6.410942 ACAAGAGCTATGCTGTGATATACA 57.589 37.500 0.00 0.00 39.88 2.29
3491 5120 7.448420 ACAAGAGCTATGCTGTGATATACAAT 58.552 34.615 0.00 0.00 39.88 2.71
3492 5121 7.387122 ACAAGAGCTATGCTGTGATATACAATG 59.613 37.037 0.00 0.00 39.88 2.82
3493 5122 6.404708 AGAGCTATGCTGTGATATACAATGG 58.595 40.000 0.00 0.00 39.88 3.16
3494 5123 6.212187 AGAGCTATGCTGTGATATACAATGGA 59.788 38.462 0.00 0.00 39.88 3.41
3503 5132 9.542462 GCTGTGATATACAATGGAACTAAACTA 57.458 33.333 0.00 0.00 39.20 2.24
3557 5186 7.807977 ATTAGAATACAATTGTTCCATCGCT 57.192 32.000 17.78 8.08 0.00 4.93
3570 5199 1.485397 CATCGCTGTTGATCCTCTCG 58.515 55.000 0.00 0.00 0.00 4.04
3575 5204 1.480954 GCTGTTGATCCTCTCGGGTTA 59.519 52.381 0.00 0.00 36.25 2.85
3632 5262 0.791983 CTGCGCTGAAAGTTGCATCG 60.792 55.000 9.73 2.61 44.20 3.84
3719 5349 3.202906 GGCCTACGATTACATTGCAAGA 58.797 45.455 4.94 0.00 0.00 3.02
3746 5376 1.860078 CGACTGGTTCGGCAAAGAC 59.140 57.895 0.00 0.00 44.60 3.01
3884 5526 3.181431 GGTAGGTGTAGGCAGAGGAGATA 60.181 52.174 0.00 0.00 0.00 1.98
4022 5668 2.105821 TCGGTCAGATGTTCCCACTTTT 59.894 45.455 0.00 0.00 0.00 2.27
4023 5669 2.884639 CGGTCAGATGTTCCCACTTTTT 59.115 45.455 0.00 0.00 0.00 1.94
4030 5676 0.874175 GTTCCCACTTTTTGCGTGCC 60.874 55.000 0.00 0.00 0.00 5.01
4093 5739 7.890127 AGTTTTTGGATCTGGATTATCTCACAA 59.110 33.333 0.00 0.00 0.00 3.33
4160 5808 1.885887 GTGCCTGTGACATTTTGCCTA 59.114 47.619 0.00 0.00 0.00 3.93
4164 5812 3.612479 GCCTGTGACATTTTGCCTACAAG 60.612 47.826 0.00 0.00 37.04 3.16
4165 5813 3.568538 CTGTGACATTTTGCCTACAAGC 58.431 45.455 0.00 0.00 37.04 4.01
4172 5820 2.656947 TTTGCCTACAAGCTTGGACT 57.343 45.000 29.18 12.07 37.04 3.85
4177 5825 1.347707 CCTACAAGCTTGGACTGTCCA 59.652 52.381 29.18 25.12 46.61 4.02
4257 5907 6.353323 TCCAGAAAAACGCCATCTTATATGA 58.647 36.000 0.00 0.00 0.00 2.15
4258 5908 6.998074 TCCAGAAAAACGCCATCTTATATGAT 59.002 34.615 0.00 0.00 0.00 2.45
4267 5917 9.755804 AACGCCATCTTATATGATCATATAGTG 57.244 33.333 26.63 24.25 37.50 2.74
4285 5935 3.299503 AGTGGCAGAAAACCATGTCTTT 58.700 40.909 0.00 0.00 39.95 2.52
4286 5936 4.469657 AGTGGCAGAAAACCATGTCTTTA 58.530 39.130 0.00 0.00 39.95 1.85
4287 5937 5.079643 AGTGGCAGAAAACCATGTCTTTAT 58.920 37.500 0.00 0.00 39.95 1.40
4288 5938 5.047802 AGTGGCAGAAAACCATGTCTTTATG 60.048 40.000 6.90 6.90 39.95 1.90
4290 5940 5.048083 TGGCAGAAAACCATGTCTTTATGTC 60.048 40.000 8.32 8.32 30.88 3.06
4292 5942 6.294731 GGCAGAAAACCATGTCTTTATGTCTT 60.295 38.462 11.02 0.00 28.38 3.01
4293 5943 7.147976 GCAGAAAACCATGTCTTTATGTCTTT 58.852 34.615 11.02 0.00 0.00 2.52
4294 5944 7.327032 GCAGAAAACCATGTCTTTATGTCTTTC 59.673 37.037 11.02 0.00 32.47 2.62
4295 5945 8.352201 CAGAAAACCATGTCTTTATGTCTTTCA 58.648 33.333 0.00 0.00 33.54 2.69
4296 5946 8.352942 AGAAAACCATGTCTTTATGTCTTTCAC 58.647 33.333 0.00 0.00 33.54 3.18
4297 5947 6.575162 AACCATGTCTTTATGTCTTTCACC 57.425 37.500 0.00 0.00 0.00 4.02
4299 5949 6.306987 ACCATGTCTTTATGTCTTTCACCTT 58.693 36.000 0.00 0.00 0.00 3.50
4301 5951 6.207417 CCATGTCTTTATGTCTTTCACCTTGT 59.793 38.462 0.00 0.00 0.00 3.16
4302 5952 6.618287 TGTCTTTATGTCTTTCACCTTGTG 57.382 37.500 0.00 0.00 34.45 3.33
4382 6162 8.246908 TGTACAACAAAATAGTTACAGATCCG 57.753 34.615 0.00 0.00 0.00 4.18
4395 6175 2.362397 ACAGATCCGTAGATTCATGCGT 59.638 45.455 0.00 0.00 30.90 5.24
4399 6179 1.202371 TCCGTAGATTCATGCGTCACC 60.202 52.381 0.00 0.00 0.00 4.02
4415 6195 0.739813 CACCGACGAACATTCTCCCC 60.740 60.000 0.00 0.00 0.00 4.81
4416 6196 1.189524 ACCGACGAACATTCTCCCCA 61.190 55.000 0.00 0.00 0.00 4.96
4417 6197 0.036765 CCGACGAACATTCTCCCCAA 60.037 55.000 0.00 0.00 0.00 4.12
4418 6198 1.076332 CGACGAACATTCTCCCCAAC 58.924 55.000 0.00 0.00 0.00 3.77
4419 6199 1.337823 CGACGAACATTCTCCCCAACT 60.338 52.381 0.00 0.00 0.00 3.16
4420 6200 2.076863 GACGAACATTCTCCCCAACTG 58.923 52.381 0.00 0.00 0.00 3.16
4421 6201 1.271379 ACGAACATTCTCCCCAACTGG 60.271 52.381 0.00 0.00 0.00 4.00
4422 6202 1.271379 CGAACATTCTCCCCAACTGGT 60.271 52.381 0.00 0.00 0.00 4.00
4423 6203 2.437413 GAACATTCTCCCCAACTGGTC 58.563 52.381 0.00 0.00 0.00 4.02
4424 6204 1.747444 ACATTCTCCCCAACTGGTCT 58.253 50.000 0.00 0.00 0.00 3.85
4425 6205 2.915869 ACATTCTCCCCAACTGGTCTA 58.084 47.619 0.00 0.00 0.00 2.59
4426 6206 2.572104 ACATTCTCCCCAACTGGTCTAC 59.428 50.000 0.00 0.00 0.00 2.59
4427 6207 2.409064 TTCTCCCCAACTGGTCTACA 57.591 50.000 0.00 0.00 0.00 2.74
4428 6208 2.409064 TCTCCCCAACTGGTCTACAA 57.591 50.000 0.00 0.00 0.00 2.41
4429 6209 2.915869 TCTCCCCAACTGGTCTACAAT 58.084 47.619 0.00 0.00 0.00 2.71
4430 6210 4.069312 TCTCCCCAACTGGTCTACAATA 57.931 45.455 0.00 0.00 0.00 1.90
4431 6211 3.773119 TCTCCCCAACTGGTCTACAATAC 59.227 47.826 0.00 0.00 0.00 1.89
4432 6212 3.517901 CTCCCCAACTGGTCTACAATACA 59.482 47.826 0.00 0.00 0.00 2.29
4433 6213 3.911260 TCCCCAACTGGTCTACAATACAA 59.089 43.478 0.00 0.00 0.00 2.41
4434 6214 4.007659 CCCCAACTGGTCTACAATACAAC 58.992 47.826 0.00 0.00 0.00 3.32
4435 6215 4.505918 CCCCAACTGGTCTACAATACAACA 60.506 45.833 0.00 0.00 0.00 3.33
4436 6216 4.695455 CCCAACTGGTCTACAATACAACAG 59.305 45.833 0.00 0.00 0.00 3.16
4437 6217 5.512404 CCCAACTGGTCTACAATACAACAGA 60.512 44.000 0.00 0.00 0.00 3.41
4438 6218 5.639506 CCAACTGGTCTACAATACAACAGAG 59.360 44.000 0.00 0.00 0.00 3.35
4439 6219 6.455647 CAACTGGTCTACAATACAACAGAGA 58.544 40.000 0.00 0.00 0.00 3.10
4440 6220 6.665992 ACTGGTCTACAATACAACAGAGAA 57.334 37.500 0.00 0.00 0.00 2.87
4441 6221 6.456501 ACTGGTCTACAATACAACAGAGAAC 58.543 40.000 0.00 0.00 0.00 3.01
4442 6222 6.041637 ACTGGTCTACAATACAACAGAGAACA 59.958 38.462 0.00 0.00 0.00 3.18
4443 6223 6.822442 TGGTCTACAATACAACAGAGAACAA 58.178 36.000 0.00 0.00 28.00 2.83
4444 6224 6.704493 TGGTCTACAATACAACAGAGAACAAC 59.296 38.462 0.00 0.00 28.00 3.32
4445 6225 6.704493 GGTCTACAATACAACAGAGAACAACA 59.296 38.462 0.00 0.00 0.00 3.33
4446 6226 7.225931 GGTCTACAATACAACAGAGAACAACAA 59.774 37.037 0.00 0.00 0.00 2.83
4447 6227 8.609176 GTCTACAATACAACAGAGAACAACAAA 58.391 33.333 0.00 0.00 0.00 2.83
4448 6228 9.337396 TCTACAATACAACAGAGAACAACAAAT 57.663 29.630 0.00 0.00 0.00 2.32
4449 6229 9.950680 CTACAATACAACAGAGAACAACAAATT 57.049 29.630 0.00 0.00 0.00 1.82
4451 6231 9.301153 ACAATACAACAGAGAACAACAAATTTC 57.699 29.630 0.00 0.00 0.00 2.17
4452 6232 9.520204 CAATACAACAGAGAACAACAAATTTCT 57.480 29.630 0.00 0.00 34.68 2.52
4453 6233 9.736023 AATACAACAGAGAACAACAAATTTCTC 57.264 29.630 3.60 3.60 45.55 2.87
4454 6234 6.564328 ACAACAGAGAACAACAAATTTCTCC 58.436 36.000 7.55 0.00 46.11 3.71
4455 6235 5.774498 ACAGAGAACAACAAATTTCTCCC 57.226 39.130 7.55 0.00 46.11 4.30
4456 6236 4.584743 ACAGAGAACAACAAATTTCTCCCC 59.415 41.667 7.55 0.00 46.11 4.81
4457 6237 4.584325 CAGAGAACAACAAATTTCTCCCCA 59.416 41.667 7.55 0.00 46.11 4.96
4462 6242 3.387699 ACAACAAATTTCTCCCCAACTGG 59.612 43.478 0.00 0.00 0.00 4.00
4539 6332 3.080300 ACACACAGGTTTGGAAACAGA 57.920 42.857 4.71 0.00 44.54 3.41
4575 6368 2.459934 GGCACAAAGGAGAACAAAACG 58.540 47.619 0.00 0.00 0.00 3.60
4620 6413 7.895759 ACATTCTCCTTCAGAGCTATAGATTC 58.104 38.462 3.21 0.16 42.90 2.52
4695 6488 3.381949 CTCGTGGCAGTTAACTATAGCC 58.618 50.000 22.49 22.49 45.41 3.93
4714 6507 3.473647 CTGATCTCCCCGCCTGCA 61.474 66.667 0.00 0.00 0.00 4.41
4721 6514 2.181525 CCCCGCCTGCAAAATTCG 59.818 61.111 0.00 0.00 0.00 3.34
4757 6550 1.339055 TGCCGACAGAGAAATGAAGGG 60.339 52.381 0.00 0.00 0.00 3.95
4780 6573 5.147330 AGACAGAATTGTAATGACCGACA 57.853 39.130 0.00 0.00 37.76 4.35
4790 6583 5.358090 TGTAATGACCGACAAACAAGTGTA 58.642 37.500 0.00 0.00 0.00 2.90
4791 6584 4.806342 AATGACCGACAAACAAGTGTAC 57.194 40.909 0.00 0.00 0.00 2.90
4800 6593 3.933955 ACAAACAAGTGTACGTGCTTACA 59.066 39.130 4.97 0.00 0.00 2.41
4818 6611 1.152963 ACGCTTTCCACCACTGCTT 60.153 52.632 0.00 0.00 0.00 3.91
4889 6682 4.864633 TCTGCTAGTATTCTCAATCTGCG 58.135 43.478 0.00 0.00 0.00 5.18
4905 6698 4.718858 TCTGCGTGTTGTAATTGTACAC 57.281 40.909 0.00 8.61 40.00 2.90
4937 6730 8.810652 TCCAAAAGAATAAAGTTGGATTTTCG 57.189 30.769 0.00 0.00 43.54 3.46
4947 6740 3.761752 AGTTGGATTTTCGTAACCATGGG 59.238 43.478 18.09 0.00 32.31 4.00
5013 6806 2.551270 TCATTTCCAGTCCAGGCTAGT 58.449 47.619 0.00 0.00 0.00 2.57
5115 6908 8.716909 GTTTTCAGTTCCAAAAGAAACAAATCA 58.283 29.630 0.00 0.00 35.85 2.57
5159 6953 9.685276 AAACATCAATATAACTGAATGTCTCCA 57.315 29.630 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.995547 GTGTAACCCGCCCAGGAT 59.004 61.111 0.00 0.00 45.00 3.24
16 17 6.896021 TGAGGATATAGCTACTGGTGTAAC 57.104 41.667 0.00 0.00 0.00 2.50
17 18 6.837048 TGTTGAGGATATAGCTACTGGTGTAA 59.163 38.462 0.00 0.00 0.00 2.41
18 19 6.370453 TGTTGAGGATATAGCTACTGGTGTA 58.630 40.000 0.00 0.00 0.00 2.90
19 20 5.208890 TGTTGAGGATATAGCTACTGGTGT 58.791 41.667 0.00 0.00 0.00 4.16
20 21 5.791336 TGTTGAGGATATAGCTACTGGTG 57.209 43.478 0.00 0.00 0.00 4.17
21 22 6.808321 TTTGTTGAGGATATAGCTACTGGT 57.192 37.500 0.00 0.00 0.00 4.00
22 23 7.012421 GGTTTTTGTTGAGGATATAGCTACTGG 59.988 40.741 0.00 0.00 0.00 4.00
23 24 7.012421 GGGTTTTTGTTGAGGATATAGCTACTG 59.988 40.741 0.00 0.00 0.00 2.74
24 25 7.054751 GGGTTTTTGTTGAGGATATAGCTACT 58.945 38.462 0.00 0.00 0.00 2.57
25 26 7.054751 AGGGTTTTTGTTGAGGATATAGCTAC 58.945 38.462 0.00 0.00 0.00 3.58
26 27 7.208064 AGGGTTTTTGTTGAGGATATAGCTA 57.792 36.000 0.00 0.00 0.00 3.32
27 28 6.079712 AGGGTTTTTGTTGAGGATATAGCT 57.920 37.500 0.00 0.00 0.00 3.32
28 29 7.773690 TCTTAGGGTTTTTGTTGAGGATATAGC 59.226 37.037 0.00 0.00 0.00 2.97
29 30 9.681062 TTCTTAGGGTTTTTGTTGAGGATATAG 57.319 33.333 0.00 0.00 0.00 1.31
31 32 8.950007 TTTCTTAGGGTTTTTGTTGAGGATAT 57.050 30.769 0.00 0.00 0.00 1.63
32 33 8.770010 TTTTCTTAGGGTTTTTGTTGAGGATA 57.230 30.769 0.00 0.00 0.00 2.59
33 34 7.669089 TTTTCTTAGGGTTTTTGTTGAGGAT 57.331 32.000 0.00 0.00 0.00 3.24
34 35 7.179516 AGTTTTTCTTAGGGTTTTTGTTGAGGA 59.820 33.333 0.00 0.00 0.00 3.71
35 36 7.327975 AGTTTTTCTTAGGGTTTTTGTTGAGG 58.672 34.615 0.00 0.00 0.00 3.86
36 37 7.491372 GGAGTTTTTCTTAGGGTTTTTGTTGAG 59.509 37.037 0.00 0.00 0.00 3.02
37 38 7.179516 AGGAGTTTTTCTTAGGGTTTTTGTTGA 59.820 33.333 0.00 0.00 0.00 3.18
38 39 7.327975 AGGAGTTTTTCTTAGGGTTTTTGTTG 58.672 34.615 0.00 0.00 0.00 3.33
39 40 7.490657 AGGAGTTTTTCTTAGGGTTTTTGTT 57.509 32.000 0.00 0.00 0.00 2.83
40 41 7.364408 GGAAGGAGTTTTTCTTAGGGTTTTTGT 60.364 37.037 0.00 0.00 0.00 2.83
41 42 6.984474 GGAAGGAGTTTTTCTTAGGGTTTTTG 59.016 38.462 0.00 0.00 0.00 2.44
42 43 6.670464 TGGAAGGAGTTTTTCTTAGGGTTTTT 59.330 34.615 0.00 0.00 0.00 1.94
43 44 6.199376 TGGAAGGAGTTTTTCTTAGGGTTTT 58.801 36.000 0.00 0.00 0.00 2.43
44 45 5.773091 TGGAAGGAGTTTTTCTTAGGGTTT 58.227 37.500 0.00 0.00 0.00 3.27
45 46 5.103643 ACTGGAAGGAGTTTTTCTTAGGGTT 60.104 40.000 0.00 0.00 39.30 4.11
46 47 4.415846 ACTGGAAGGAGTTTTTCTTAGGGT 59.584 41.667 0.00 0.00 39.30 4.34
47 48 4.986783 ACTGGAAGGAGTTTTTCTTAGGG 58.013 43.478 0.00 0.00 39.30 3.53
48 49 6.321435 ACAAACTGGAAGGAGTTTTTCTTAGG 59.679 38.462 0.00 0.00 42.33 2.69
49 50 7.334844 ACAAACTGGAAGGAGTTTTTCTTAG 57.665 36.000 0.00 0.00 42.33 2.18
50 51 8.050930 ACTACAAACTGGAAGGAGTTTTTCTTA 58.949 33.333 0.00 0.00 42.33 2.10
51 52 6.890268 ACTACAAACTGGAAGGAGTTTTTCTT 59.110 34.615 0.00 0.00 42.33 2.52
52 53 6.424032 ACTACAAACTGGAAGGAGTTTTTCT 58.576 36.000 0.00 0.00 42.33 2.52
53 54 6.238676 GGACTACAAACTGGAAGGAGTTTTTC 60.239 42.308 0.00 0.00 42.33 2.29
54 55 5.593095 GGACTACAAACTGGAAGGAGTTTTT 59.407 40.000 0.00 0.00 42.33 1.94
66 67 4.516365 AGGTTCGTAGGACTACAAACTG 57.484 45.455 11.71 0.00 34.38 3.16
92 93 9.533253 CCCTTAAAATTATTCCTACATTGCTTG 57.467 33.333 0.00 0.00 0.00 4.01
93 94 9.267071 ACCCTTAAAATTATTCCTACATTGCTT 57.733 29.630 0.00 0.00 0.00 3.91
134 135 8.900781 CACTCAAGTCTATTTGATTCAATGGAT 58.099 33.333 0.00 0.00 36.55 3.41
156 157 3.876274 TGAATACAGAGCTGGTCACTC 57.124 47.619 9.78 0.00 34.19 3.51
187 188 5.754890 GCCACAATATTGAAACCATTGATCC 59.245 40.000 22.16 0.00 34.48 3.36
194 195 5.048083 GTGAGAAGCCACAATATTGAAACCA 60.048 40.000 22.16 5.91 37.04 3.67
197 198 6.003326 TGAGTGAGAAGCCACAATATTGAAA 58.997 36.000 22.16 0.00 39.42 2.69
243 245 8.747666 GTTTTCTTTATGCGACATGTTTTTGTA 58.252 29.630 0.00 0.00 0.00 2.41
246 248 7.514435 CGTGTTTTCTTTATGCGACATGTTTTT 60.514 33.333 0.00 0.00 0.00 1.94
256 258 9.353353 CATAATAGTACGTGTTTTCTTTATGCG 57.647 33.333 0.00 0.00 0.00 4.73
280 282 5.591877 GCCCAAGAAACATCTTCTGATACAT 59.408 40.000 0.00 0.00 0.00 2.29
281 283 4.943705 GCCCAAGAAACATCTTCTGATACA 59.056 41.667 0.00 0.00 0.00 2.29
288 290 2.222227 AGGGCCCAAGAAACATCTTC 57.778 50.000 27.56 0.00 0.00 2.87
298 300 4.283212 TGTTTTCTGATTAAAGGGCCCAAG 59.717 41.667 27.56 9.38 0.00 3.61
328 330 9.232473 GGTCTCAAGAGAACCTAATACAATTTT 57.768 33.333 3.72 0.00 39.20 1.82
329 331 8.606830 AGGTCTCAAGAGAACCTAATACAATTT 58.393 33.333 11.33 0.00 46.12 1.82
330 332 8.152023 AGGTCTCAAGAGAACCTAATACAATT 57.848 34.615 11.33 0.00 46.12 2.32
331 333 7.741554 AGGTCTCAAGAGAACCTAATACAAT 57.258 36.000 11.33 0.00 46.12 2.71
332 334 7.123847 GGTAGGTCTCAAGAGAACCTAATACAA 59.876 40.741 20.22 6.39 46.12 2.41
345 347 2.325484 TGTTGCTGGTAGGTCTCAAGA 58.675 47.619 0.00 0.00 0.00 3.02
374 376 4.766375 TCTGGCTAAGAAATAAGAACCCG 58.234 43.478 0.00 0.00 29.54 5.28
382 384 3.681594 CGCAGGGTTCTGGCTAAGAAATA 60.682 47.826 4.29 0.00 46.51 1.40
414 417 0.734253 CTCTCAACTTGAGCGGTCGG 60.734 60.000 13.24 7.92 43.95 4.79
417 420 0.039074 CGACTCTCAACTTGAGCGGT 60.039 55.000 13.24 13.36 43.95 5.68
440 443 7.771361 ACCATATATACCTACTCATCTCAGACG 59.229 40.741 0.00 0.00 0.00 4.18
466 469 1.243342 CCAATGGCTCGGCACAAGAA 61.243 55.000 0.00 0.00 0.00 2.52
500 503 8.463607 CCACATAATGTTCCTATTAAAAACCGT 58.536 33.333 0.00 0.00 0.00 4.83
525 528 1.218230 GCATCGAATCGCCACTCTCC 61.218 60.000 0.00 0.00 0.00 3.71
562 565 4.335082 TGATTTTATTGTTCACGCCGAG 57.665 40.909 0.00 0.00 0.00 4.63
564 567 5.570973 TGATTTGATTTTATTGTTCACGCCG 59.429 36.000 0.00 0.00 0.00 6.46
565 568 6.942886 TGATTTGATTTTATTGTTCACGCC 57.057 33.333 0.00 0.00 0.00 5.68
595 598 7.374272 TGCGTCAATTAATTTGGATCAAAAGA 58.626 30.769 1.01 0.00 36.90 2.52
597 600 7.374272 TCTGCGTCAATTAATTTGGATCAAAA 58.626 30.769 0.00 0.00 36.90 2.44
599 602 6.507958 TCTGCGTCAATTAATTTGGATCAA 57.492 33.333 0.00 0.00 35.92 2.57
619 622 1.698506 ACTCCCTCCTATCGCTTCTG 58.301 55.000 0.00 0.00 0.00 3.02
620 623 2.816337 GCTACTCCCTCCTATCGCTTCT 60.816 54.545 0.00 0.00 0.00 2.85
623 626 0.478942 TGCTACTCCCTCCTATCGCT 59.521 55.000 0.00 0.00 0.00 4.93
624 627 1.329256 TTGCTACTCCCTCCTATCGC 58.671 55.000 0.00 0.00 0.00 4.58
625 628 4.608948 ATTTTGCTACTCCCTCCTATCG 57.391 45.455 0.00 0.00 0.00 2.92
626 629 5.935206 GCTAATTTTGCTACTCCCTCCTATC 59.065 44.000 0.00 0.00 0.00 2.08
627 630 5.369699 TGCTAATTTTGCTACTCCCTCCTAT 59.630 40.000 4.54 0.00 0.00 2.57
629 632 3.523564 TGCTAATTTTGCTACTCCCTCCT 59.476 43.478 4.54 0.00 0.00 3.69
671 679 9.334693 GCAAACATCTTGTGTCTCTTAAAATAG 57.665 33.333 0.00 0.00 41.14 1.73
705 713 3.425227 CGGACGCTAATTTAAACACCACC 60.425 47.826 0.00 0.00 0.00 4.61
706 714 3.432933 TCGGACGCTAATTTAAACACCAC 59.567 43.478 0.00 0.00 0.00 4.16
723 731 2.094649 ACCTGAACTCGATCTTTCGGAC 60.095 50.000 10.50 0.00 45.53 4.79
727 735 4.623595 GTCTTCACCTGAACTCGATCTTTC 59.376 45.833 0.00 0.00 0.00 2.62
730 738 3.426615 AGTCTTCACCTGAACTCGATCT 58.573 45.455 0.00 0.00 0.00 2.75
731 739 3.859411 AGTCTTCACCTGAACTCGATC 57.141 47.619 0.00 0.00 0.00 3.69
732 740 3.862642 GCAAGTCTTCACCTGAACTCGAT 60.863 47.826 0.00 0.00 0.00 3.59
733 741 2.545952 GCAAGTCTTCACCTGAACTCGA 60.546 50.000 0.00 0.00 0.00 4.04
734 742 1.795286 GCAAGTCTTCACCTGAACTCG 59.205 52.381 0.00 0.00 0.00 4.18
736 744 3.498774 ATGCAAGTCTTCACCTGAACT 57.501 42.857 0.00 0.00 0.00 3.01
738 746 6.017109 GTCTTAAATGCAAGTCTTCACCTGAA 60.017 38.462 0.00 0.00 0.00 3.02
740 748 5.335191 GGTCTTAAATGCAAGTCTTCACCTG 60.335 44.000 0.00 0.00 0.00 4.00
741 749 4.762251 GGTCTTAAATGCAAGTCTTCACCT 59.238 41.667 0.00 0.00 0.00 4.00
742 750 4.518970 TGGTCTTAAATGCAAGTCTTCACC 59.481 41.667 0.00 0.00 0.00 4.02
787 1658 7.715249 GCCTTTTCCTTTCTGTCCTTTTTATTT 59.285 33.333 0.00 0.00 0.00 1.40
788 1659 7.217200 GCCTTTTCCTTTCTGTCCTTTTTATT 58.783 34.615 0.00 0.00 0.00 1.40
896 1767 8.774586 GCTGAACACTTTCTCTTCTGTTTTATA 58.225 33.333 0.00 0.00 32.36 0.98
897 1768 7.283127 TGCTGAACACTTTCTCTTCTGTTTTAT 59.717 33.333 0.00 0.00 32.36 1.40
931 1810 2.893489 CTGGGTTTCCCTTTCTTCCTTG 59.107 50.000 6.38 0.00 45.70 3.61
959 1841 2.202756 GCGAGGTGGCGGTTCTAG 60.203 66.667 0.00 0.00 0.00 2.43
1257 2150 3.797353 ATAGGGCTGGGTGGCGTG 61.797 66.667 0.00 0.00 42.84 5.34
1258 2151 3.797353 CATAGGGCTGGGTGGCGT 61.797 66.667 0.00 0.00 42.84 5.68
1259 2152 3.479203 TCATAGGGCTGGGTGGCG 61.479 66.667 0.00 0.00 42.84 5.69
1260 2153 2.193248 GTCATAGGGCTGGGTGGC 59.807 66.667 0.00 0.00 40.96 5.01
1261 2154 2.757124 GGGTCATAGGGCTGGGTGG 61.757 68.421 0.00 0.00 0.00 4.61
1262 2155 2.919043 GGGTCATAGGGCTGGGTG 59.081 66.667 0.00 0.00 0.00 4.61
1263 2156 2.768344 CGGGTCATAGGGCTGGGT 60.768 66.667 0.00 0.00 0.00 4.51
1264 2157 4.256180 GCGGGTCATAGGGCTGGG 62.256 72.222 0.00 0.00 0.00 4.45
1265 2158 3.479203 TGCGGGTCATAGGGCTGG 61.479 66.667 0.00 0.00 0.00 4.85
1266 2159 2.203070 GTGCGGGTCATAGGGCTG 60.203 66.667 0.00 0.00 0.00 4.85
1267 2160 3.849951 CGTGCGGGTCATAGGGCT 61.850 66.667 0.00 0.00 0.00 5.19
1268 2161 2.660258 AATCGTGCGGGTCATAGGGC 62.660 60.000 0.00 0.00 0.00 5.19
1269 2162 0.600255 GAATCGTGCGGGTCATAGGG 60.600 60.000 0.00 0.00 0.00 3.53
1270 2163 0.600255 GGAATCGTGCGGGTCATAGG 60.600 60.000 0.00 0.00 0.00 2.57
1271 2164 0.389391 AGGAATCGTGCGGGTCATAG 59.611 55.000 0.00 0.00 0.00 2.23
1272 2165 0.387929 GAGGAATCGTGCGGGTCATA 59.612 55.000 0.00 0.00 0.00 2.15
1273 2166 1.144057 GAGGAATCGTGCGGGTCAT 59.856 57.895 0.00 0.00 0.00 3.06
1274 2167 1.613317 ATGAGGAATCGTGCGGGTCA 61.613 55.000 0.00 0.00 0.00 4.02
1275 2168 0.462047 AATGAGGAATCGTGCGGGTC 60.462 55.000 0.00 0.00 0.00 4.46
1276 2169 0.462047 GAATGAGGAATCGTGCGGGT 60.462 55.000 0.00 0.00 0.00 5.28
1277 2170 1.160329 GGAATGAGGAATCGTGCGGG 61.160 60.000 0.00 0.00 0.00 6.13
1278 2171 0.179073 AGGAATGAGGAATCGTGCGG 60.179 55.000 0.00 0.00 0.00 5.69
1311 2234 0.743345 AAATTAGGCCACGGCTCGAC 60.743 55.000 5.01 0.00 39.70 4.20
1316 2239 3.076258 GCCCAAATTAGGCCACGGC 62.076 63.158 5.01 0.00 45.16 5.68
1401 2324 1.567746 CCTGCATTGCAAAAACCGCC 61.568 55.000 13.18 0.00 38.41 6.13
1447 2370 1.648467 GAACCTGATCTTGGCGTGCC 61.648 60.000 3.30 3.30 0.00 5.01
1532 2455 4.436998 AAGAGAACGCGGCGGAGG 62.437 66.667 27.37 0.00 0.00 4.30
1599 2522 2.022625 TCTGAATCTGGTGGAGGAGGAT 60.023 50.000 0.00 0.00 0.00 3.24
1601 2524 1.761784 CTCTGAATCTGGTGGAGGAGG 59.238 57.143 0.00 0.00 0.00 4.30
1602 2525 1.138661 GCTCTGAATCTGGTGGAGGAG 59.861 57.143 0.00 0.00 0.00 3.69
1609 2532 0.540923 GAGCCTGCTCTGAATCTGGT 59.459 55.000 11.82 0.00 39.80 4.00
1678 2601 1.130613 GACTCGCGCAACATCACAC 59.869 57.895 8.75 0.00 0.00 3.82
1686 2609 0.385849 CTTGCAATTGACTCGCGCAA 60.386 50.000 10.34 0.00 40.08 4.85
2631 4179 3.567797 GCTGTTCATCGGGCTCGC 61.568 66.667 0.00 0.00 36.13 5.03
2633 4181 2.892425 CGGCTGTTCATCGGGCTC 60.892 66.667 0.00 0.00 44.51 4.70
2639 4187 3.195698 GACCCGCGGCTGTTCATC 61.196 66.667 22.85 3.90 0.00 2.92
2640 4188 4.778143 GGACCCGCGGCTGTTCAT 62.778 66.667 22.85 0.00 0.00 2.57
2646 4194 4.473520 CAATCAGGACCCGCGGCT 62.474 66.667 22.85 5.96 0.00 5.52
2649 4197 4.856801 CCCCAATCAGGACCCGCG 62.857 72.222 0.00 0.00 41.22 6.46
2650 4198 3.407967 TCCCCAATCAGGACCCGC 61.408 66.667 0.00 0.00 41.22 6.13
2656 4204 3.809013 CCCCGGTCCCCAATCAGG 61.809 72.222 0.00 0.00 37.03 3.86
2657 4205 3.809013 CCCCCGGTCCCCAATCAG 61.809 72.222 0.00 0.00 0.00 2.90
2770 4350 3.436577 TTAGGTGATTTGGCCCGTTTA 57.563 42.857 0.00 0.00 0.00 2.01
2809 4389 7.634432 CAGAAAACACCGAAAAATTTGTTAAGC 59.366 33.333 0.00 0.00 31.92 3.09
2910 4490 2.498807 TGCTACTATTCTCAGCGCAG 57.501 50.000 11.47 0.00 38.15 5.18
2911 4491 2.166459 ACTTGCTACTATTCTCAGCGCA 59.834 45.455 11.47 0.00 38.15 6.09
2912 4492 2.815478 ACTTGCTACTATTCTCAGCGC 58.185 47.619 0.00 0.00 38.15 5.92
2913 4493 3.978217 GCTACTTGCTACTATTCTCAGCG 59.022 47.826 0.00 0.00 38.15 5.18
2943 4532 6.810182 CACCCTTAAAGCAAGAATTTCATCTG 59.190 38.462 0.00 0.00 36.22 2.90
2949 4538 7.016563 AGGAATTCACCCTTAAAGCAAGAATTT 59.983 33.333 7.93 0.00 35.20 1.82
2981 4570 7.066766 GGCCCTCATATTAGAATTATGCAGAAG 59.933 40.741 0.00 0.00 0.00 2.85
2989 4578 7.387265 TCAAGTGGCCCTCATATTAGAATTA 57.613 36.000 0.00 0.00 0.00 1.40
2993 4582 5.221925 GGATTCAAGTGGCCCTCATATTAGA 60.222 44.000 0.00 0.00 0.00 2.10
2998 4587 2.492025 AGGATTCAAGTGGCCCTCATA 58.508 47.619 0.00 0.00 0.00 2.15
3004 4593 3.636153 ACTCTAAGGATTCAAGTGGCC 57.364 47.619 0.00 0.00 0.00 5.36
3074 4665 6.947733 TCGGCTCCCAATTCATAAATTATGAT 59.052 34.615 15.52 0.33 44.06 2.45
3080 4671 4.262164 GCAATCGGCTCCCAATTCATAAAT 60.262 41.667 0.00 0.00 40.25 1.40
3102 4693 0.613012 ATCAACAGGAAGGGCAAGGC 60.613 55.000 0.00 0.00 0.00 4.35
3114 4705 6.401394 TGACCTGACTCATAAGAATCAACAG 58.599 40.000 0.00 0.00 0.00 3.16
3139 4730 7.723172 AGCCTAGCTAAAGATAAATCTTGCAAT 59.277 33.333 14.09 0.00 45.83 3.56
3145 4736 7.796054 TCACAAGCCTAGCTAAAGATAAATCT 58.204 34.615 0.00 0.00 38.25 2.40
3146 4737 8.438676 TTCACAAGCCTAGCTAAAGATAAATC 57.561 34.615 0.00 0.00 38.25 2.17
3203 4801 4.786507 CGAAACAAGTGAAGCATTGATGA 58.213 39.130 0.00 0.00 0.00 2.92
3208 4806 2.618241 TCAGCGAAACAAGTGAAGCATT 59.382 40.909 0.00 0.00 0.00 3.56
3211 4809 2.032178 AGTTCAGCGAAACAAGTGAAGC 59.968 45.455 6.96 0.00 29.71 3.86
3217 4815 6.952935 AGTAGATAAGTTCAGCGAAACAAG 57.047 37.500 6.96 0.00 0.00 3.16
3241 4840 8.936864 GCAACTGAACAACTGAAATATACTAGT 58.063 33.333 0.00 0.00 0.00 2.57
3242 4841 8.110612 CGCAACTGAACAACTGAAATATACTAG 58.889 37.037 0.00 0.00 0.00 2.57
3244 4843 6.426937 ACGCAACTGAACAACTGAAATATACT 59.573 34.615 0.00 0.00 0.00 2.12
3245 4844 6.519761 CACGCAACTGAACAACTGAAATATAC 59.480 38.462 0.00 0.00 0.00 1.47
3246 4845 6.203915 ACACGCAACTGAACAACTGAAATATA 59.796 34.615 0.00 0.00 0.00 0.86
3247 4846 5.008613 ACACGCAACTGAACAACTGAAATAT 59.991 36.000 0.00 0.00 0.00 1.28
3259 4865 1.201181 AGCACAAAACACGCAACTGAA 59.799 42.857 0.00 0.00 0.00 3.02
3261 4867 0.915904 CAGCACAAAACACGCAACTG 59.084 50.000 0.00 0.00 0.00 3.16
3262 4868 0.801836 GCAGCACAAAACACGCAACT 60.802 50.000 0.00 0.00 0.00 3.16
3267 4873 1.321148 CAAACAGCAGCACAAAACACG 59.679 47.619 0.00 0.00 0.00 4.49
3275 4881 3.225798 TGGGCCAAACAGCAGCAC 61.226 61.111 2.13 0.00 0.00 4.40
3280 4886 4.621087 AGGGGTGGGCCAAACAGC 62.621 66.667 8.40 2.60 36.17 4.40
3281 4887 2.201210 AAGGGGTGGGCCAAACAG 59.799 61.111 8.40 0.00 36.17 3.16
3293 4899 1.538849 GCAACTTTGTTGAGCAAGGGG 60.539 52.381 13.75 0.00 38.34 4.79
3306 4912 7.280652 AGCAAAAACAGTTATCATTGCAACTTT 59.719 29.630 19.72 0.00 44.08 2.66
3309 4915 6.421801 AGAGCAAAAACAGTTATCATTGCAAC 59.578 34.615 19.72 15.07 44.08 4.17
3318 4929 2.488153 GCCGGAGAGCAAAAACAGTTAT 59.512 45.455 5.05 0.00 0.00 1.89
3337 4948 5.348986 TCAGAATTTACACGATCTAGTGCC 58.651 41.667 0.00 0.00 45.45 5.01
3338 4949 7.470289 AATCAGAATTTACACGATCTAGTGC 57.530 36.000 0.00 0.00 45.45 4.40
3344 4955 9.820229 TTTACACAAATCAGAATTTACACGATC 57.180 29.630 0.00 0.00 33.27 3.69
3387 4998 9.989869 GCCTCAAGAACTGATTAAACTATAAAC 57.010 33.333 0.00 0.00 32.14 2.01
3449 5078 8.298030 AGCTCTTGTTTATAATTTGCAACAAC 57.702 30.769 0.00 0.00 34.87 3.32
3547 5176 1.936547 GAGGATCAACAGCGATGGAAC 59.063 52.381 5.32 0.00 33.17 3.62
3570 5199 2.722094 TGTTCAGTGCCATGATAACCC 58.278 47.619 0.00 0.00 0.00 4.11
3575 5204 5.711506 TGTTAAGAATGTTCAGTGCCATGAT 59.288 36.000 0.00 0.00 0.00 2.45
3632 5262 2.033372 GAGTAGGGAAGAGGCAGGTAC 58.967 57.143 0.00 0.00 0.00 3.34
3692 5322 2.007641 GTAATCGTAGGCCGCGTCG 61.008 63.158 19.28 12.60 36.19 5.12
3698 5328 3.202906 TCTTGCAATGTAATCGTAGGCC 58.797 45.455 0.00 0.00 0.00 5.19
3719 5349 1.986698 CGAACCAGTCGTACCGATTT 58.013 50.000 0.00 0.00 45.09 2.17
3884 5526 7.599245 GCCTACATAGTTGCGAAGATTACTTAT 59.401 37.037 0.00 0.00 36.39 1.73
4022 5668 2.227865 GGATCTAAAAGTTGGCACGCAA 59.772 45.455 0.00 0.00 0.00 4.85
4023 5669 1.810151 GGATCTAAAAGTTGGCACGCA 59.190 47.619 0.00 0.00 0.00 5.24
4030 5676 6.428771 TGGAAGTTAACCGGATCTAAAAGTTG 59.571 38.462 9.46 0.00 0.00 3.16
4093 5739 2.419667 GCATTTCAAAGCCTGTTGCAT 58.580 42.857 0.00 0.00 44.83 3.96
4121 5768 4.320057 GGCACATCTTGAGAAACTTGACAG 60.320 45.833 0.00 0.00 0.00 3.51
4219 5869 8.547894 GCGTTTTTCTGGAATTTAACAAGAAAT 58.452 29.630 0.00 0.00 0.00 2.17
4242 5892 8.363390 CCACTATATGATCATATAAGATGGCGT 58.637 37.037 27.56 20.78 36.23 5.68
4244 5894 8.152898 TGCCACTATATGATCATATAAGATGGC 58.847 37.037 38.15 38.15 45.82 4.40
4257 5907 6.367983 ACATGGTTTTCTGCCACTATATGAT 58.632 36.000 0.00 0.00 39.03 2.45
4258 5908 5.754782 ACATGGTTTTCTGCCACTATATGA 58.245 37.500 0.00 0.00 39.03 2.15
4267 5917 5.183904 AGACATAAAGACATGGTTTTCTGCC 59.816 40.000 0.00 0.00 0.00 4.85
4285 5935 6.108687 CAGCTATCACAAGGTGAAAGACATA 58.891 40.000 2.87 0.00 45.96 2.29
4286 5936 4.940046 CAGCTATCACAAGGTGAAAGACAT 59.060 41.667 2.87 0.00 45.96 3.06
4287 5937 4.318332 CAGCTATCACAAGGTGAAAGACA 58.682 43.478 2.87 0.00 45.96 3.41
4288 5938 3.126000 GCAGCTATCACAAGGTGAAAGAC 59.874 47.826 7.21 0.00 45.96 3.01
4290 5940 3.076621 TGCAGCTATCACAAGGTGAAAG 58.923 45.455 7.21 0.00 45.96 2.62
4292 5942 2.038952 ACTGCAGCTATCACAAGGTGAA 59.961 45.455 15.27 0.00 45.96 3.18
4293 5943 1.625315 ACTGCAGCTATCACAAGGTGA 59.375 47.619 15.27 1.05 45.70 4.02
4294 5944 2.105006 ACTGCAGCTATCACAAGGTG 57.895 50.000 15.27 0.00 45.62 4.00
4295 5945 2.430465 CAACTGCAGCTATCACAAGGT 58.570 47.619 15.27 0.00 0.00 3.50
4296 5946 1.131883 GCAACTGCAGCTATCACAAGG 59.868 52.381 15.27 0.00 41.59 3.61
4297 5947 2.539346 GCAACTGCAGCTATCACAAG 57.461 50.000 15.27 0.00 41.59 3.16
4321 6093 4.606961 CACAATGGACACTTGTGGTTTAC 58.393 43.478 8.01 0.00 46.16 2.01
4322 6094 4.909696 CACAATGGACACTTGTGGTTTA 57.090 40.909 8.01 0.00 46.16 2.01
4395 6175 0.245539 GGGAGAATGTTCGTCGGTGA 59.754 55.000 0.00 0.00 0.00 4.02
4399 6179 1.076332 GTTGGGGAGAATGTTCGTCG 58.924 55.000 0.00 0.00 0.00 5.12
4415 6195 6.455647 TCTCTGTTGTATTGTAGACCAGTTG 58.544 40.000 0.00 0.00 0.00 3.16
4416 6196 6.665992 TCTCTGTTGTATTGTAGACCAGTT 57.334 37.500 0.00 0.00 0.00 3.16
4417 6197 6.041637 TGTTCTCTGTTGTATTGTAGACCAGT 59.958 38.462 0.00 0.00 0.00 4.00
4418 6198 6.455647 TGTTCTCTGTTGTATTGTAGACCAG 58.544 40.000 0.00 0.00 0.00 4.00
4419 6199 6.413783 TGTTCTCTGTTGTATTGTAGACCA 57.586 37.500 0.00 0.00 0.00 4.02
4420 6200 6.704493 TGTTGTTCTCTGTTGTATTGTAGACC 59.296 38.462 0.00 0.00 0.00 3.85
4421 6201 7.709269 TGTTGTTCTCTGTTGTATTGTAGAC 57.291 36.000 0.00 0.00 0.00 2.59
4422 6202 8.725405 TTTGTTGTTCTCTGTTGTATTGTAGA 57.275 30.769 0.00 0.00 0.00 2.59
4423 6203 9.950680 AATTTGTTGTTCTCTGTTGTATTGTAG 57.049 29.630 0.00 0.00 0.00 2.74
4425 6205 9.301153 GAAATTTGTTGTTCTCTGTTGTATTGT 57.699 29.630 0.00 0.00 0.00 2.71
4426 6206 9.520204 AGAAATTTGTTGTTCTCTGTTGTATTG 57.480 29.630 0.00 0.00 27.52 1.90
4427 6207 9.736023 GAGAAATTTGTTGTTCTCTGTTGTATT 57.264 29.630 0.00 0.00 44.20 1.89
4428 6208 8.352942 GGAGAAATTTGTTGTTCTCTGTTGTAT 58.647 33.333 11.90 0.00 45.98 2.29
4429 6209 7.201785 GGGAGAAATTTGTTGTTCTCTGTTGTA 60.202 37.037 11.90 0.00 45.98 2.41
4430 6210 6.405842 GGGAGAAATTTGTTGTTCTCTGTTGT 60.406 38.462 11.90 0.00 45.98 3.32
4431 6211 5.979517 GGGAGAAATTTGTTGTTCTCTGTTG 59.020 40.000 11.90 0.00 45.98 3.33
4432 6212 5.069119 GGGGAGAAATTTGTTGTTCTCTGTT 59.931 40.000 11.90 0.00 45.98 3.16
4433 6213 4.584743 GGGGAGAAATTTGTTGTTCTCTGT 59.415 41.667 11.90 0.00 45.98 3.41
4434 6214 4.584325 TGGGGAGAAATTTGTTGTTCTCTG 59.416 41.667 11.90 0.00 45.98 3.35
4435 6215 4.803452 TGGGGAGAAATTTGTTGTTCTCT 58.197 39.130 11.90 0.00 45.98 3.10
4436 6216 5.069119 AGTTGGGGAGAAATTTGTTGTTCTC 59.931 40.000 0.00 5.09 45.99 2.87
4437 6217 4.962362 AGTTGGGGAGAAATTTGTTGTTCT 59.038 37.500 0.00 0.00 36.80 3.01
4438 6218 5.049828 CAGTTGGGGAGAAATTTGTTGTTC 58.950 41.667 0.00 0.00 0.00 3.18
4439 6219 4.141733 CCAGTTGGGGAGAAATTTGTTGTT 60.142 41.667 0.00 0.00 0.00 2.83
4440 6220 3.387699 CCAGTTGGGGAGAAATTTGTTGT 59.612 43.478 0.00 0.00 0.00 3.32
4441 6221 3.387699 ACCAGTTGGGGAGAAATTTGTTG 59.612 43.478 0.00 0.00 42.91 3.33
4442 6222 3.641436 GACCAGTTGGGGAGAAATTTGTT 59.359 43.478 0.00 0.00 42.91 2.83
4443 6223 3.117131 AGACCAGTTGGGGAGAAATTTGT 60.117 43.478 0.00 0.00 42.91 2.83
4444 6224 3.500343 AGACCAGTTGGGGAGAAATTTG 58.500 45.455 0.00 0.00 42.91 2.32
4445 6225 3.903530 AGACCAGTTGGGGAGAAATTT 57.096 42.857 2.79 0.00 42.91 1.82
4446 6226 3.655777 TGTAGACCAGTTGGGGAGAAATT 59.344 43.478 2.79 0.00 42.91 1.82
4447 6227 3.256704 TGTAGACCAGTTGGGGAGAAAT 58.743 45.455 2.79 0.00 42.91 2.17
4448 6228 2.696775 TGTAGACCAGTTGGGGAGAAA 58.303 47.619 2.79 0.00 42.91 2.52
4449 6229 2.409064 TGTAGACCAGTTGGGGAGAA 57.591 50.000 2.79 0.00 42.91 2.87
4450 6230 2.409064 TTGTAGACCAGTTGGGGAGA 57.591 50.000 2.79 0.00 42.91 3.71
4451 6231 3.517901 TGTATTGTAGACCAGTTGGGGAG 59.482 47.826 2.79 0.00 42.91 4.30
4452 6232 3.522759 TGTATTGTAGACCAGTTGGGGA 58.477 45.455 2.79 0.00 42.91 4.81
4453 6233 3.992943 TGTATTGTAGACCAGTTGGGG 57.007 47.619 2.79 0.00 42.91 4.96
4454 6234 4.647611 TGTTGTATTGTAGACCAGTTGGG 58.352 43.478 2.79 0.00 44.81 4.12
4455 6235 5.547465 TCTGTTGTATTGTAGACCAGTTGG 58.453 41.667 0.00 0.00 42.17 3.77
4456 6236 6.455647 TCTCTGTTGTATTGTAGACCAGTTG 58.544 40.000 0.00 0.00 0.00 3.16
4457 6237 6.665992 TCTCTGTTGTATTGTAGACCAGTT 57.334 37.500 0.00 0.00 0.00 3.16
4462 6242 7.709269 TGTTGTTCTCTGTTGTATTGTAGAC 57.291 36.000 0.00 0.00 0.00 2.59
4557 6350 4.095610 GTGTCGTTTTGTTCTCCTTTGTG 58.904 43.478 0.00 0.00 0.00 3.33
4575 6368 0.536006 AGCTTTGCCAGACCTGTGTC 60.536 55.000 0.00 0.00 42.09 3.67
4620 6413 2.185004 ACTTGGAACCTCATGAACGG 57.815 50.000 0.00 0.00 0.00 4.44
4695 6488 3.136750 CAGGCGGGGAGATCAGAG 58.863 66.667 0.00 0.00 0.00 3.35
4714 6507 7.254084 GGCATTTCATCTTTTATCGCGAATTTT 60.254 33.333 15.24 0.00 0.00 1.82
4721 6514 3.968724 GTCGGCATTTCATCTTTTATCGC 59.031 43.478 0.00 0.00 0.00 4.58
4757 6550 5.168569 TGTCGGTCATTACAATTCTGTCTC 58.831 41.667 0.00 0.00 36.96 3.36
4780 6573 4.525411 GTGTAAGCACGTACACTTGTTT 57.475 40.909 16.41 0.00 46.84 2.83
4800 6593 0.751643 AAAGCAGTGGTGGAAAGCGT 60.752 50.000 0.00 0.00 0.00 5.07
4818 6611 3.749088 CGGGTTTGTATCTTGCTACACAA 59.251 43.478 0.00 0.00 36.62 3.33
4857 6650 6.156949 TGAGAATACTAGCAGAATCCAAAGGT 59.843 38.462 0.00 0.00 0.00 3.50
4889 6682 8.068977 TGGAAATAACGTGTACAATTACAACAC 58.931 33.333 0.00 6.94 40.00 3.32
4905 6698 9.685828 TCCAACTTTATTCTTTTGGAAATAACG 57.314 29.630 0.00 0.00 43.61 3.18
4928 6721 3.244946 TGTCCCATGGTTACGAAAATCCA 60.245 43.478 11.73 0.00 0.00 3.41
4937 6730 3.951037 TGCATACATTGTCCCATGGTTAC 59.049 43.478 11.73 9.22 0.00 2.50
4947 6740 4.550422 TCGAGCTCTATGCATACATTGTC 58.450 43.478 12.85 0.00 45.94 3.18
4950 6743 8.783833 ATAAATTCGAGCTCTATGCATACATT 57.216 30.769 12.85 0.00 45.94 2.71
4952 6745 7.759886 GGTATAAATTCGAGCTCTATGCATACA 59.240 37.037 12.85 0.00 45.94 2.29
5013 6806 0.762842 ACAGGTATGCATCCGGGCTA 60.763 55.000 0.19 0.00 34.04 3.93
5159 6953 4.021016 GGAGCGATTCCACTATTCCAGTAT 60.021 45.833 1.87 0.00 46.01 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.