Multiple sequence alignment - TraesCS7D01G194200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G194200 chr7D 100.000 4218 0 0 1 4218 150939711 150935494 0.000000e+00 7790
1 TraesCS7D01G194200 chr7D 81.097 693 105 21 149 826 98984741 98985422 8.030000e-147 531
2 TraesCS7D01G194200 chr7D 82.500 520 73 11 162 672 491882476 491882986 1.390000e-119 440
3 TraesCS7D01G194200 chr7B 90.009 3363 228 55 914 4218 113100228 113096916 0.000000e+00 4250
4 TraesCS7D01G194200 chr4B 89.842 3357 236 49 914 4218 402988567 402985264 0.000000e+00 4213
5 TraesCS7D01G194200 chr7A 92.163 1544 87 16 914 2455 150891375 150889864 0.000000e+00 2150
6 TraesCS7D01G194200 chr7A 95.054 1112 43 4 2458 3566 150883544 150882442 0.000000e+00 1738
7 TraesCS7D01G194200 chr7A 88.138 607 34 14 3619 4218 150882422 150881847 0.000000e+00 688
8 TraesCS7D01G194200 chr7A 80.594 572 91 8 149 710 127671977 127672538 1.400000e-114 424
9 TraesCS7D01G194200 chr7A 91.870 123 10 0 28 150 497753348 497753226 5.610000e-39 172
10 TraesCS7D01G194200 chrUn 95.059 425 21 0 2459 2883 476593914 476593490 0.000000e+00 669
11 TraesCS7D01G194200 chr6B 91.467 375 30 1 2590 2962 516562843 516563217 8.090000e-142 514
12 TraesCS7D01G194200 chr6B 94.495 109 5 1 2947 3055 516563771 516563878 2.610000e-37 167
13 TraesCS7D01G194200 chr6B 98.507 67 1 0 2486 2552 516562775 516562841 7.410000e-23 119
14 TraesCS7D01G194200 chr5D 80.645 558 75 10 151 683 391894318 391893769 6.570000e-108 401
15 TraesCS7D01G194200 chr5D 81.172 478 65 10 162 615 564224552 564225028 1.110000e-95 361
16 TraesCS7D01G194200 chr5D 88.889 126 12 2 26 150 322973766 322973642 2.030000e-33 154
17 TraesCS7D01G194200 chr5A 78.116 690 99 35 162 814 79207801 79208475 1.420000e-104 390
18 TraesCS7D01G194200 chr1D 77.522 694 97 27 169 814 465879386 465880068 3.100000e-96 363
19 TraesCS7D01G194200 chr1D 86.923 130 16 1 25 153 483253966 483253837 1.220000e-30 145
20 TraesCS7D01G194200 chr2A 79.380 548 81 12 152 675 194180183 194179644 1.440000e-94 357
21 TraesCS7D01G194200 chr2A 85.906 149 16 1 7 150 329694762 329694910 2.030000e-33 154
22 TraesCS7D01G194200 chr1B 77.738 557 105 13 162 710 554159936 554160481 1.460000e-84 324
23 TraesCS7D01G194200 chr1B 77.479 484 90 8 149 613 148864577 148865060 5.370000e-69 272
24 TraesCS7D01G194200 chr1B 88.462 130 12 3 26 153 184221099 184221227 2.030000e-33 154
25 TraesCS7D01G194200 chr1B 84.722 144 17 1 7 145 678449423 678449280 5.690000e-29 139
26 TraesCS7D01G194200 chr6D 78.571 392 60 10 162 529 12986041 12985650 1.960000e-58 237
27 TraesCS7D01G194200 chr3D 87.248 149 14 1 7 150 531564700 531564552 9.380000e-37 165
28 TraesCS7D01G194200 chr2D 88.800 125 14 0 26 150 600439079 600439203 2.030000e-33 154
29 TraesCS7D01G194200 chr2B 86.207 145 15 1 7 146 708182382 708182526 7.300000e-33 152
30 TraesCS7D01G194200 chr5B 85.149 101 11 4 165 264 337029141 337029044 2.680000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G194200 chr7D 150935494 150939711 4217 True 7790.000000 7790 100.000 1 4218 1 chr7D.!!$R1 4217
1 TraesCS7D01G194200 chr7D 98984741 98985422 681 False 531.000000 531 81.097 149 826 1 chr7D.!!$F1 677
2 TraesCS7D01G194200 chr7D 491882476 491882986 510 False 440.000000 440 82.500 162 672 1 chr7D.!!$F2 510
3 TraesCS7D01G194200 chr7B 113096916 113100228 3312 True 4250.000000 4250 90.009 914 4218 1 chr7B.!!$R1 3304
4 TraesCS7D01G194200 chr4B 402985264 402988567 3303 True 4213.000000 4213 89.842 914 4218 1 chr4B.!!$R1 3304
5 TraesCS7D01G194200 chr7A 150889864 150891375 1511 True 2150.000000 2150 92.163 914 2455 1 chr7A.!!$R1 1541
6 TraesCS7D01G194200 chr7A 150881847 150883544 1697 True 1213.000000 1738 91.596 2458 4218 2 chr7A.!!$R3 1760
7 TraesCS7D01G194200 chr7A 127671977 127672538 561 False 424.000000 424 80.594 149 710 1 chr7A.!!$F1 561
8 TraesCS7D01G194200 chr6B 516562775 516563878 1103 False 266.666667 514 94.823 2486 3055 3 chr6B.!!$F1 569
9 TraesCS7D01G194200 chr5D 391893769 391894318 549 True 401.000000 401 80.645 151 683 1 chr5D.!!$R2 532
10 TraesCS7D01G194200 chr5A 79207801 79208475 674 False 390.000000 390 78.116 162 814 1 chr5A.!!$F1 652
11 TraesCS7D01G194200 chr1D 465879386 465880068 682 False 363.000000 363 77.522 169 814 1 chr1D.!!$F1 645
12 TraesCS7D01G194200 chr2A 194179644 194180183 539 True 357.000000 357 79.380 152 675 1 chr2A.!!$R1 523
13 TraesCS7D01G194200 chr1B 554159936 554160481 545 False 324.000000 324 77.738 162 710 1 chr1B.!!$F3 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.036875 GCTGCACCCCTTAGAGTGTT 59.963 55.0 0.0 0.0 36.35 3.32 F
902 950 0.253160 TTGGAGCCCCTGGTGTAGAT 60.253 55.0 0.0 0.0 0.00 1.98 F
947 995 0.322008 CCTGGTGAAGACCCAAGAGC 60.322 60.0 0.0 0.0 42.34 4.09 F
1373 1427 0.527817 ATCGATTGCGTCTCCGAACC 60.528 55.0 0.0 0.0 38.98 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 1444 0.236711 CAGAAGCACGTGAAGCAAGG 59.763 55.000 22.23 0.00 0.00 3.61 R
1868 1965 0.393537 CCTTCCAGTCCCTGCATCAC 60.394 60.000 0.00 0.00 0.00 3.06 R
2457 2560 0.475044 AAGGGCCAACGTACAGGAAA 59.525 50.000 6.18 0.00 0.00 3.13 R
3327 4003 1.133976 AGAATCCGGATGCAAAGGAGG 60.134 52.381 24.87 3.18 37.49 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.652205 TTCCATACCTCAAATTAGGAACCT 57.348 37.500 1.07 0.00 39.15 3.50
26 27 6.248569 TCCATACCTCAAATTAGGAACCTC 57.751 41.667 1.07 0.00 39.15 3.85
27 28 5.132144 TCCATACCTCAAATTAGGAACCTCC 59.868 44.000 1.07 0.00 39.15 4.30
28 29 5.104109 CCATACCTCAAATTAGGAACCTCCA 60.104 44.000 1.07 0.00 39.61 3.86
29 30 6.410853 CCATACCTCAAATTAGGAACCTCCAT 60.411 42.308 1.07 0.00 39.61 3.41
30 31 7.202186 CCATACCTCAAATTAGGAACCTCCATA 60.202 40.741 1.07 0.00 39.61 2.74
31 32 6.848562 ACCTCAAATTAGGAACCTCCATAT 57.151 37.500 1.07 0.00 39.61 1.78
32 33 7.226059 ACCTCAAATTAGGAACCTCCATATT 57.774 36.000 1.07 0.00 39.61 1.28
33 34 8.344939 ACCTCAAATTAGGAACCTCCATATTA 57.655 34.615 1.07 0.00 39.61 0.98
34 35 8.960064 ACCTCAAATTAGGAACCTCCATATTAT 58.040 33.333 1.07 0.00 39.61 1.28
35 36 9.813826 CCTCAAATTAGGAACCTCCATATTATT 57.186 33.333 0.00 0.00 39.61 1.40
41 42 9.686683 ATTAGGAACCTCCATATTATTACATGC 57.313 33.333 0.00 0.00 39.61 4.06
42 43 7.090319 AGGAACCTCCATATTATTACATGCA 57.910 36.000 0.00 0.00 39.61 3.96
43 44 7.526041 AGGAACCTCCATATTATTACATGCAA 58.474 34.615 0.00 0.00 39.61 4.08
44 45 7.448469 AGGAACCTCCATATTATTACATGCAAC 59.552 37.037 0.00 0.00 39.61 4.17
45 46 7.230510 GGAACCTCCATATTATTACATGCAACA 59.769 37.037 0.00 0.00 36.28 3.33
46 47 7.510549 ACCTCCATATTATTACATGCAACAC 57.489 36.000 0.00 0.00 0.00 3.32
47 48 7.059788 ACCTCCATATTATTACATGCAACACA 58.940 34.615 0.00 0.00 0.00 3.72
48 49 7.229306 ACCTCCATATTATTACATGCAACACAG 59.771 37.037 0.00 0.00 0.00 3.66
49 50 6.969366 TCCATATTATTACATGCAACACAGC 58.031 36.000 0.00 0.00 0.00 4.40
50 51 5.852755 CCATATTATTACATGCAACACAGCG 59.147 40.000 0.00 0.00 37.31 5.18
51 52 6.293353 CCATATTATTACATGCAACACAGCGA 60.293 38.462 0.00 0.00 37.31 4.93
52 53 5.756195 ATTATTACATGCAACACAGCGAT 57.244 34.783 0.00 0.00 37.31 4.58
53 54 3.680642 ATTACATGCAACACAGCGATC 57.319 42.857 0.00 0.00 37.31 3.69
54 55 2.385013 TACATGCAACACAGCGATCT 57.615 45.000 0.00 0.00 37.31 2.75
55 56 1.527034 ACATGCAACACAGCGATCTT 58.473 45.000 0.00 0.00 37.31 2.40
56 57 1.881973 ACATGCAACACAGCGATCTTT 59.118 42.857 0.00 0.00 37.31 2.52
57 58 2.247637 CATGCAACACAGCGATCTTTG 58.752 47.619 0.00 0.00 37.31 2.77
58 59 1.592064 TGCAACACAGCGATCTTTGA 58.408 45.000 0.00 0.00 37.31 2.69
59 60 1.532437 TGCAACACAGCGATCTTTGAG 59.468 47.619 0.00 0.00 37.31 3.02
60 61 1.727213 GCAACACAGCGATCTTTGAGC 60.727 52.381 0.00 0.00 0.00 4.26
61 62 0.792640 AACACAGCGATCTTTGAGCG 59.207 50.000 0.65 0.65 44.59 5.03
62 63 1.016130 ACACAGCGATCTTTGAGCGG 61.016 55.000 7.31 0.00 41.94 5.52
63 64 0.737367 CACAGCGATCTTTGAGCGGA 60.737 55.000 7.31 0.00 41.94 5.54
64 65 0.459237 ACAGCGATCTTTGAGCGGAG 60.459 55.000 7.31 0.00 41.94 4.63
78 79 2.125633 GGAGCTTCGTCCGGTTCC 60.126 66.667 0.00 0.00 0.00 3.62
79 80 2.506438 GAGCTTCGTCCGGTTCCG 60.506 66.667 0.00 4.08 0.00 4.30
80 81 4.736896 AGCTTCGTCCGGTTCCGC 62.737 66.667 0.00 0.00 0.00 5.54
81 82 4.736896 GCTTCGTCCGGTTCCGCT 62.737 66.667 0.00 0.00 0.00 5.52
82 83 2.506438 CTTCGTCCGGTTCCGCTC 60.506 66.667 0.00 0.46 0.00 5.03
83 84 3.984200 CTTCGTCCGGTTCCGCTCC 62.984 68.421 0.00 0.00 0.00 4.70
104 105 4.099170 CTCGCTCGGTTCCGTCGT 62.099 66.667 19.88 0.00 0.00 4.34
105 106 3.606065 CTCGCTCGGTTCCGTCGTT 62.606 63.158 19.88 0.00 0.00 3.85
106 107 3.170585 CGCTCGGTTCCGTCGTTC 61.171 66.667 11.04 0.00 0.00 3.95
107 108 2.808321 GCTCGGTTCCGTCGTTCC 60.808 66.667 11.04 0.00 0.00 3.62
108 109 2.126189 CTCGGTTCCGTCGTTCCC 60.126 66.667 11.04 0.00 0.00 3.97
109 110 2.911509 TCGGTTCCGTCGTTCCCA 60.912 61.111 11.04 0.00 0.00 4.37
110 111 2.221906 CTCGGTTCCGTCGTTCCCAT 62.222 60.000 11.04 0.00 0.00 4.00
111 112 2.098233 CGGTTCCGTCGTTCCCATG 61.098 63.158 2.82 0.00 0.00 3.66
112 113 1.004200 GGTTCCGTCGTTCCCATGT 60.004 57.895 0.00 0.00 0.00 3.21
113 114 1.017701 GGTTCCGTCGTTCCCATGTC 61.018 60.000 0.00 0.00 0.00 3.06
114 115 1.017701 GTTCCGTCGTTCCCATGTCC 61.018 60.000 0.00 0.00 0.00 4.02
115 116 2.495366 TTCCGTCGTTCCCATGTCCG 62.495 60.000 0.00 0.00 0.00 4.79
116 117 2.508439 CGTCGTTCCCATGTCCGG 60.508 66.667 0.00 0.00 0.00 5.14
117 118 2.818274 GTCGTTCCCATGTCCGGC 60.818 66.667 0.00 0.00 0.00 6.13
118 119 4.444838 TCGTTCCCATGTCCGGCG 62.445 66.667 0.00 0.00 0.00 6.46
139 140 3.404773 GGCTGCACCCCTTAGAGT 58.595 61.111 0.50 0.00 0.00 3.24
140 141 1.078143 GGCTGCACCCCTTAGAGTG 60.078 63.158 0.50 0.00 37.05 3.51
141 142 1.679898 GCTGCACCCCTTAGAGTGT 59.320 57.895 0.00 0.00 36.35 3.55
142 143 0.036875 GCTGCACCCCTTAGAGTGTT 59.963 55.000 0.00 0.00 36.35 3.32
143 144 1.813513 CTGCACCCCTTAGAGTGTTG 58.186 55.000 4.73 0.00 36.35 3.33
144 145 0.400213 TGCACCCCTTAGAGTGTTGG 59.600 55.000 4.73 0.00 36.35 3.77
145 146 0.400594 GCACCCCTTAGAGTGTTGGT 59.599 55.000 4.73 0.00 36.35 3.67
146 147 1.202891 GCACCCCTTAGAGTGTTGGTT 60.203 52.381 4.73 0.00 36.35 3.67
147 148 2.779506 CACCCCTTAGAGTGTTGGTTC 58.220 52.381 0.00 0.00 0.00 3.62
326 351 4.758251 TGGTGCGTCCCGATGCTG 62.758 66.667 10.11 0.00 43.48 4.41
368 393 2.949106 GTCCGTCACCGAGTTCGA 59.051 61.111 2.59 0.00 43.02 3.71
450 476 0.808755 GCACCATTTGGGGAACGTAG 59.191 55.000 2.17 0.00 42.67 3.51
502 528 4.980592 TGCACAGGCCTCCTCCCA 62.981 66.667 0.00 0.00 40.13 4.37
562 588 2.510238 GCCGCGTGAGATGAGCTT 60.510 61.111 4.92 0.00 0.00 3.74
565 591 1.153765 CGCGTGAGATGAGCTTGGA 60.154 57.895 0.00 0.00 0.00 3.53
572 598 1.474478 GAGATGAGCTTGGAGTCGACA 59.526 52.381 19.50 0.00 0.00 4.35
587 613 2.231478 GTCGACAGATCTGGAGGTGAAA 59.769 50.000 26.08 1.41 34.19 2.69
592 618 3.906846 ACAGATCTGGAGGTGAAAGACTT 59.093 43.478 26.08 0.00 34.19 3.01
619 645 2.124736 GCCCGCCATGCTGTAGAA 60.125 61.111 0.00 0.00 0.00 2.10
620 646 1.526917 GCCCGCCATGCTGTAGAAT 60.527 57.895 0.00 0.00 0.00 2.40
621 647 1.103398 GCCCGCCATGCTGTAGAATT 61.103 55.000 0.00 0.00 0.00 2.17
622 648 0.664761 CCCGCCATGCTGTAGAATTG 59.335 55.000 0.00 0.00 0.00 2.32
623 649 1.382522 CCGCCATGCTGTAGAATTGT 58.617 50.000 0.00 0.00 0.00 2.71
624 650 2.560504 CCGCCATGCTGTAGAATTGTA 58.439 47.619 0.00 0.00 0.00 2.41
625 651 2.545526 CCGCCATGCTGTAGAATTGTAG 59.454 50.000 0.00 0.00 0.00 2.74
626 652 3.457234 CGCCATGCTGTAGAATTGTAGA 58.543 45.455 0.00 0.00 0.00 2.59
661 687 2.113243 GAAGACGAGGTTGGGTGGCT 62.113 60.000 0.00 0.00 0.00 4.75
685 721 0.398318 GGAGTGGAGTGAAGTGGCTT 59.602 55.000 0.00 0.00 0.00 4.35
687 723 1.070758 GAGTGGAGTGAAGTGGCTTGA 59.929 52.381 0.00 0.00 0.00 3.02
693 729 3.206150 GAGTGAAGTGGCTTGAGTTTGA 58.794 45.455 0.00 0.00 0.00 2.69
696 732 3.565482 GTGAAGTGGCTTGAGTTTGATCA 59.435 43.478 0.00 0.00 0.00 2.92
710 746 1.332889 TGATCAGGCGAGCAGATGGT 61.333 55.000 6.93 0.00 31.10 3.55
712 748 1.620739 ATCAGGCGAGCAGATGGTGT 61.621 55.000 0.00 0.00 0.00 4.16
714 750 2.265739 GGCGAGCAGATGGTGTGA 59.734 61.111 0.00 0.00 0.00 3.58
718 754 1.850377 CGAGCAGATGGTGTGAGATC 58.150 55.000 0.00 0.00 0.00 2.75
719 755 1.850377 GAGCAGATGGTGTGAGATCG 58.150 55.000 0.00 0.00 0.00 3.69
720 756 0.463204 AGCAGATGGTGTGAGATCGG 59.537 55.000 0.00 0.00 0.00 4.18
721 757 0.531532 GCAGATGGTGTGAGATCGGG 60.532 60.000 0.00 0.00 0.00 5.14
722 758 1.114627 CAGATGGTGTGAGATCGGGA 58.885 55.000 0.00 0.00 0.00 5.14
726 762 1.227674 GGTGTGAGATCGGGATGGC 60.228 63.158 0.00 0.00 0.00 4.40
732 780 2.281761 GATCGGGATGGCGGCATT 60.282 61.111 26.52 9.58 0.00 3.56
763 811 4.961511 GTGACGGGCGTGCACAGA 62.962 66.667 18.64 0.00 32.96 3.41
789 837 5.742255 GCCCCTATATCCGCCTCATATTTAC 60.742 48.000 0.00 0.00 0.00 2.01
790 838 5.602978 CCCCTATATCCGCCTCATATTTACT 59.397 44.000 0.00 0.00 0.00 2.24
807 855 2.877154 ACTCTGGATATGAGGGGTGT 57.123 50.000 0.00 0.00 35.98 4.16
809 857 2.248686 ACTCTGGATATGAGGGGTGTCT 59.751 50.000 0.00 0.00 35.98 3.41
814 862 2.771943 GGATATGAGGGGTGTCTGTCAA 59.228 50.000 0.00 0.00 0.00 3.18
816 864 4.141390 GGATATGAGGGGTGTCTGTCAATT 60.141 45.833 0.00 0.00 0.00 2.32
820 868 0.323629 GGGGTGTCTGTCAATTCGGA 59.676 55.000 0.00 0.00 0.00 4.55
826 874 3.737266 GTGTCTGTCAATTCGGACGTTTA 59.263 43.478 0.00 0.00 44.07 2.01
827 875 4.209703 GTGTCTGTCAATTCGGACGTTTAA 59.790 41.667 0.00 0.00 44.07 1.52
828 876 4.446385 TGTCTGTCAATTCGGACGTTTAAG 59.554 41.667 0.00 0.00 44.07 1.85
829 877 4.446719 GTCTGTCAATTCGGACGTTTAAGT 59.553 41.667 0.00 0.00 40.72 2.24
830 878 4.446385 TCTGTCAATTCGGACGTTTAAGTG 59.554 41.667 0.00 0.00 40.72 3.16
831 879 4.121317 TGTCAATTCGGACGTTTAAGTGT 58.879 39.130 0.00 0.00 40.72 3.55
832 880 4.571580 TGTCAATTCGGACGTTTAAGTGTT 59.428 37.500 0.00 0.00 40.72 3.32
833 881 4.901881 GTCAATTCGGACGTTTAAGTGTTG 59.098 41.667 0.00 0.00 0.00 3.33
834 882 4.571580 TCAATTCGGACGTTTAAGTGTTGT 59.428 37.500 0.00 0.00 0.00 3.32
835 883 5.064962 TCAATTCGGACGTTTAAGTGTTGTT 59.935 36.000 0.00 0.00 0.00 2.83
836 884 4.943142 TTCGGACGTTTAAGTGTTGTTT 57.057 36.364 0.00 0.00 0.00 2.83
837 885 4.261736 TCGGACGTTTAAGTGTTGTTTG 57.738 40.909 0.00 0.00 0.00 2.93
838 886 3.931468 TCGGACGTTTAAGTGTTGTTTGA 59.069 39.130 0.00 0.00 0.00 2.69
839 887 4.033129 TCGGACGTTTAAGTGTTGTTTGAG 59.967 41.667 0.00 0.00 0.00 3.02
840 888 4.033129 CGGACGTTTAAGTGTTGTTTGAGA 59.967 41.667 0.00 0.00 0.00 3.27
841 889 5.260900 GGACGTTTAAGTGTTGTTTGAGAC 58.739 41.667 0.00 0.00 0.00 3.36
842 890 4.889241 ACGTTTAAGTGTTGTTTGAGACG 58.111 39.130 0.00 0.00 0.00 4.18
843 891 4.389687 ACGTTTAAGTGTTGTTTGAGACGT 59.610 37.500 0.00 0.00 35.49 4.34
844 892 4.953814 CGTTTAAGTGTTGTTTGAGACGTC 59.046 41.667 7.70 7.70 0.00 4.34
845 893 5.220340 CGTTTAAGTGTTGTTTGAGACGTCT 60.220 40.000 20.18 20.18 0.00 4.18
846 894 6.020440 CGTTTAAGTGTTGTTTGAGACGTCTA 60.020 38.462 20.09 0.00 0.00 2.59
847 895 7.306399 CGTTTAAGTGTTGTTTGAGACGTCTAT 60.306 37.037 20.09 0.00 0.00 1.98
848 896 8.333186 GTTTAAGTGTTGTTTGAGACGTCTATT 58.667 33.333 20.09 0.00 0.00 1.73
849 897 6.920569 AAGTGTTGTTTGAGACGTCTATTT 57.079 33.333 20.09 0.07 0.00 1.40
850 898 6.287107 AGTGTTGTTTGAGACGTCTATTTG 57.713 37.500 20.09 0.00 0.00 2.32
851 899 6.046593 AGTGTTGTTTGAGACGTCTATTTGA 58.953 36.000 20.09 0.00 0.00 2.69
852 900 6.201044 AGTGTTGTTTGAGACGTCTATTTGAG 59.799 38.462 20.09 0.00 0.00 3.02
853 901 6.018994 GTGTTGTTTGAGACGTCTATTTGAGT 60.019 38.462 20.09 0.00 0.00 3.41
854 902 6.537301 TGTTGTTTGAGACGTCTATTTGAGTT 59.463 34.615 20.09 0.00 0.00 3.01
855 903 7.707464 TGTTGTTTGAGACGTCTATTTGAGTTA 59.293 33.333 20.09 0.00 0.00 2.24
856 904 8.545420 GTTGTTTGAGACGTCTATTTGAGTTAA 58.455 33.333 20.09 2.81 0.00 2.01
857 905 8.651391 TGTTTGAGACGTCTATTTGAGTTAAA 57.349 30.769 20.09 0.48 0.00 1.52
858 906 9.100554 TGTTTGAGACGTCTATTTGAGTTAAAA 57.899 29.630 20.09 4.14 0.00 1.52
864 912 9.394477 AGACGTCTATTTGAGTTAAAATTTTGC 57.606 29.630 18.46 6.47 32.16 3.68
865 913 8.211198 ACGTCTATTTGAGTTAAAATTTTGCG 57.789 30.769 13.76 4.04 32.16 4.85
866 914 8.071368 ACGTCTATTTGAGTTAAAATTTTGCGA 58.929 29.630 13.76 0.00 32.16 5.10
867 915 9.061610 CGTCTATTTGAGTTAAAATTTTGCGAT 57.938 29.630 13.76 0.00 32.16 4.58
873 921 7.555639 TGAGTTAAAATTTTGCGATAAACCG 57.444 32.000 13.76 0.00 0.00 4.44
874 922 7.361127 TGAGTTAAAATTTTGCGATAAACCGA 58.639 30.769 13.76 0.00 0.00 4.69
875 923 7.535940 TGAGTTAAAATTTTGCGATAAACCGAG 59.464 33.333 13.76 0.00 0.00 4.63
876 924 6.307077 AGTTAAAATTTTGCGATAAACCGAGC 59.693 34.615 13.76 0.00 0.00 5.03
877 925 2.452006 ATTTTGCGATAAACCGAGCG 57.548 45.000 0.00 0.00 0.00 5.03
897 945 4.366684 GGGTTGGAGCCCCTGGTG 62.367 72.222 0.00 0.00 42.89 4.17
898 946 3.580319 GGTTGGAGCCCCTGGTGT 61.580 66.667 0.00 0.00 0.00 4.16
899 947 2.228480 GGTTGGAGCCCCTGGTGTA 61.228 63.158 0.00 0.00 0.00 2.90
900 948 1.299976 GTTGGAGCCCCTGGTGTAG 59.700 63.158 0.00 0.00 0.00 2.74
901 949 1.159905 TTGGAGCCCCTGGTGTAGA 59.840 57.895 0.00 0.00 0.00 2.59
902 950 0.253160 TTGGAGCCCCTGGTGTAGAT 60.253 55.000 0.00 0.00 0.00 1.98
903 951 0.982852 TGGAGCCCCTGGTGTAGATG 60.983 60.000 0.00 0.00 0.00 2.90
904 952 1.147153 GAGCCCCTGGTGTAGATGC 59.853 63.158 0.00 0.00 0.00 3.91
905 953 1.307343 AGCCCCTGGTGTAGATGCT 60.307 57.895 0.00 0.00 0.00 3.79
906 954 1.147153 GCCCCTGGTGTAGATGCTC 59.853 63.158 0.00 0.00 0.00 4.26
907 955 1.341156 GCCCCTGGTGTAGATGCTCT 61.341 60.000 0.00 0.00 0.00 4.09
908 956 1.207791 CCCCTGGTGTAGATGCTCTT 58.792 55.000 0.00 0.00 0.00 2.85
909 957 2.398588 CCCCTGGTGTAGATGCTCTTA 58.601 52.381 0.00 0.00 0.00 2.10
910 958 2.103263 CCCCTGGTGTAGATGCTCTTAC 59.897 54.545 0.00 0.00 0.00 2.34
911 959 2.766263 CCCTGGTGTAGATGCTCTTACA 59.234 50.000 0.00 0.00 0.00 2.41
912 960 3.197766 CCCTGGTGTAGATGCTCTTACAA 59.802 47.826 0.00 0.00 0.00 2.41
931 979 2.486472 AGGCTGACAGTCAAATCCTG 57.514 50.000 10.23 0.49 36.01 3.86
940 988 3.077359 CAGTCAAATCCTGGTGAAGACC 58.923 50.000 0.00 0.00 43.48 3.85
942 990 2.061848 TCAAATCCTGGTGAAGACCCA 58.938 47.619 0.00 0.00 42.34 4.51
944 992 2.821969 CAAATCCTGGTGAAGACCCAAG 59.178 50.000 0.00 0.00 42.34 3.61
947 995 0.322008 CCTGGTGAAGACCCAAGAGC 60.322 60.000 0.00 0.00 42.34 4.09
1033 1081 4.787280 CCACGGCCTCCTCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
1034 1082 3.151022 CACGGCCTCCTCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
1035 1083 4.467107 ACGGCCTCCTCCTCCTCC 62.467 72.222 0.00 0.00 0.00 4.30
1282 1336 3.244735 ACAAAGAAGCTCTCCTTTCCCTC 60.245 47.826 5.93 0.00 32.78 4.30
1341 1395 0.975040 AGGAGCGTCAAGAGCAGGAT 60.975 55.000 0.00 0.00 37.01 3.24
1362 1416 0.959553 TCCGGAGAGGTATCGATTGC 59.040 55.000 1.71 0.00 41.99 3.56
1371 1425 1.268896 GGTATCGATTGCGTCTCCGAA 60.269 52.381 1.71 0.00 38.98 4.30
1373 1427 0.527817 ATCGATTGCGTCTCCGAACC 60.528 55.000 0.00 0.00 38.98 3.62
1374 1428 1.153823 CGATTGCGTCTCCGAACCT 60.154 57.895 0.00 0.00 35.63 3.50
1386 1440 5.393896 CGTCTCCGAACCTAATTTACTCCTT 60.394 44.000 0.00 0.00 35.63 3.36
1388 1442 5.718130 TCTCCGAACCTAATTTACTCCTTCA 59.282 40.000 0.00 0.00 0.00 3.02
1389 1443 5.974108 TCCGAACCTAATTTACTCCTTCAG 58.026 41.667 0.00 0.00 0.00 3.02
1390 1444 4.571176 CCGAACCTAATTTACTCCTTCAGC 59.429 45.833 0.00 0.00 0.00 4.26
1391 1445 4.571176 CGAACCTAATTTACTCCTTCAGCC 59.429 45.833 0.00 0.00 0.00 4.85
1394 1448 5.501156 ACCTAATTTACTCCTTCAGCCTTG 58.499 41.667 0.00 0.00 0.00 3.61
1398 1452 2.770164 TACTCCTTCAGCCTTGCTTC 57.230 50.000 0.00 0.00 36.40 3.86
1400 1454 1.163554 CTCCTTCAGCCTTGCTTCAC 58.836 55.000 0.00 0.00 36.40 3.18
1424 1478 2.603173 GCTTCTGTTCTTCCAGTTTGCG 60.603 50.000 0.00 0.00 34.02 4.85
1428 1482 0.944386 GTTCTTCCAGTTTGCGCTCA 59.056 50.000 9.73 0.00 0.00 4.26
1446 1501 4.083855 CGCTCAGAAAAGATTGTGCTGTTA 60.084 41.667 0.00 0.00 33.08 2.41
1447 1502 5.560760 CGCTCAGAAAAGATTGTGCTGTTAA 60.561 40.000 0.00 0.00 33.08 2.01
1448 1503 5.855395 GCTCAGAAAAGATTGTGCTGTTAAG 59.145 40.000 0.00 0.00 32.65 1.85
1467 1522 6.538742 TGTTAAGCTGTTTATATGCCTCTCAC 59.461 38.462 0.00 0.00 0.00 3.51
1468 1523 3.722147 AGCTGTTTATATGCCTCTCACG 58.278 45.455 0.00 0.00 0.00 4.35
1478 1533 1.272781 GCCTCTCACGTCTCATTTCG 58.727 55.000 0.00 0.00 0.00 3.46
1479 1534 1.135373 GCCTCTCACGTCTCATTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
1486 1541 7.648112 CCTCTCACGTCTCATTTCGATATTTTA 59.352 37.037 0.00 0.00 0.00 1.52
1487 1542 8.336498 TCTCACGTCTCATTTCGATATTTTAC 57.664 34.615 0.00 0.00 0.00 2.01
1488 1543 7.971722 TCTCACGTCTCATTTCGATATTTTACA 59.028 33.333 0.00 0.00 0.00 2.41
1491 1547 9.016623 CACGTCTCATTTCGATATTTTACAGTA 57.983 33.333 0.00 0.00 0.00 2.74
1529 1616 4.875536 TGTATACACCTTATTGTGCTGCTG 59.124 41.667 0.08 0.00 39.93 4.41
1532 1619 3.750371 ACACCTTATTGTGCTGCTGTTA 58.250 40.909 0.00 0.00 39.93 2.41
1684 1771 2.030027 TCTCCCACTGTGTTGGAGAT 57.970 50.000 23.57 0.00 45.52 2.75
1690 1777 4.141287 CCCACTGTGTTGGAGATTTGTTA 58.859 43.478 7.08 0.00 39.24 2.41
1694 1783 7.040062 CCCACTGTGTTGGAGATTTGTTATTTA 60.040 37.037 7.08 0.00 39.24 1.40
1695 1784 8.522830 CCACTGTGTTGGAGATTTGTTATTTAT 58.477 33.333 7.08 0.00 39.24 1.40
1811 1901 1.943968 GCCCAGCGTGACATCTGTTAA 60.944 52.381 6.84 0.00 0.00 2.01
1932 2031 9.739276 AAACATACCTATTTTTGACATCTGAGA 57.261 29.630 0.00 0.00 0.00 3.27
2037 2136 3.701205 TGGCATCCGCTTCATACATAT 57.299 42.857 0.00 0.00 38.60 1.78
2131 2231 5.161943 AGTAGGTCCTGCTTAATTCGTTT 57.838 39.130 3.18 0.00 0.00 3.60
2134 2234 3.506067 AGGTCCTGCTTAATTCGTTTTGG 59.494 43.478 0.00 0.00 0.00 3.28
2220 2320 3.433740 GGTTTCACTCCTCTTCACAAGGT 60.434 47.826 0.00 0.00 35.29 3.50
2404 2506 8.935844 CATTTACACTTTAGCACTTGTCAGATA 58.064 33.333 0.00 0.00 0.00 1.98
2414 2516 6.006449 AGCACTTGTCAGATAGATTTGGTTT 58.994 36.000 0.00 0.00 0.00 3.27
2457 2560 7.805071 CAGTTCGCATCTTGAAGTTTAAGATTT 59.195 33.333 17.71 0.00 41.60 2.17
2554 2657 2.281900 GGTGCCCTGCAAACCGTA 60.282 61.111 0.00 0.00 41.47 4.02
2561 2664 0.951558 CCTGCAAACCGTAAAGCTGT 59.048 50.000 0.00 0.00 0.00 4.40
2638 2741 2.303311 ACTTCTCTTACCAGCTCAACCC 59.697 50.000 0.00 0.00 0.00 4.11
2645 2748 0.398318 ACCAGCTCAACCCTTCTGAC 59.602 55.000 0.00 0.00 0.00 3.51
2707 2810 0.038892 GCTGGACACCACTGCATTTG 60.039 55.000 0.00 0.00 33.62 2.32
2912 3015 1.063806 CGACAGTCGCCTTGAGAAAG 58.936 55.000 10.66 0.00 31.14 2.62
2927 3030 4.517285 TGAGAAAGGTTCATATCCACTGC 58.483 43.478 0.00 0.00 0.00 4.40
3247 3923 5.584649 TGTTCTGACAAAAGTTCGAGACAAT 59.415 36.000 0.00 0.00 31.49 2.71
3249 3925 4.511454 TCTGACAAAAGTTCGAGACAATGG 59.489 41.667 0.00 0.00 0.00 3.16
3291 3967 6.017192 AGTAGAACATGGGAACTCTGTCTTA 58.983 40.000 0.00 0.00 0.00 2.10
3301 3977 6.107343 GGGAACTCTGTCTTAAGGTGATTAC 58.893 44.000 1.85 0.00 0.00 1.89
3313 3989 3.782046 AGGTGATTACTCCGATTGTTCG 58.218 45.455 0.00 0.00 45.08 3.95
3327 4003 2.163818 TGTTCGTGGACTGTTGATCC 57.836 50.000 0.00 0.00 36.70 3.36
3492 4168 2.703416 TGTTCTCATGGACATGCTGTC 58.297 47.619 7.41 7.52 46.23 3.51
3497 4173 3.771479 TCTCATGGACATGCTGTCTAGTT 59.229 43.478 7.41 0.00 46.19 2.24
3547 4224 5.417580 GTGGGCATACAGGAAATCAAACTAA 59.582 40.000 0.00 0.00 0.00 2.24
3573 4250 2.169352 CAGAGGGTATCTCAGTTGGTGG 59.831 54.545 0.00 0.00 44.81 4.61
3576 4253 3.773119 GAGGGTATCTCAGTTGGTGGTTA 59.227 47.826 0.00 0.00 42.02 2.85
3585 4262 6.694447 TCTCAGTTGGTGGTTATACTGTAAC 58.306 40.000 0.00 0.00 39.16 2.50
3588 4265 5.121768 CAGTTGGTGGTTATACTGTAACTGC 59.878 44.000 0.00 0.00 37.86 4.40
3597 4274 7.279981 TGGTTATACTGTAACTGCATAAAGCTG 59.720 37.037 0.00 0.00 45.94 4.24
3601 4278 1.064060 GTAACTGCATAAAGCTGGCCG 59.936 52.381 0.00 0.00 45.49 6.13
3609 4286 0.322456 TAAAGCTGGCCGCAGATGTT 60.322 50.000 19.30 4.27 42.61 2.71
3610 4287 1.870055 AAAGCTGGCCGCAGATGTTG 61.870 55.000 19.30 0.00 42.61 3.33
3611 4288 3.058160 GCTGGCCGCAGATGTTGT 61.058 61.111 13.61 0.00 38.92 3.32
3612 4289 2.872557 CTGGCCGCAGATGTTGTG 59.127 61.111 0.00 0.00 37.04 3.33
3613 4290 1.672030 CTGGCCGCAGATGTTGTGA 60.672 57.895 0.00 0.00 39.74 3.58
3614 4291 1.002257 TGGCCGCAGATGTTGTGAT 60.002 52.632 0.00 0.00 39.74 3.06
3615 4292 0.608856 TGGCCGCAGATGTTGTGATT 60.609 50.000 0.00 0.00 39.74 2.57
3616 4293 0.179156 GGCCGCAGATGTTGTGATTG 60.179 55.000 0.00 0.00 39.74 2.67
3621 4305 2.904319 CGCAGATGTTGTGATTGTTTCG 59.096 45.455 0.00 0.00 39.74 3.46
3699 4387 9.567848 TGATTGTTTTTCTTCAAACTGTAGAAC 57.432 29.630 0.00 0.00 34.29 3.01
3722 4410 6.890979 CTCAGAAGAGTCATTTTCCCTTTT 57.109 37.500 0.00 0.00 37.11 2.27
3723 4411 7.282332 CTCAGAAGAGTCATTTTCCCTTTTT 57.718 36.000 0.00 0.00 37.11 1.94
3724 4412 7.277174 TCAGAAGAGTCATTTTCCCTTTTTC 57.723 36.000 0.00 0.00 0.00 2.29
3725 4413 6.265422 TCAGAAGAGTCATTTTCCCTTTTTCC 59.735 38.462 0.00 0.00 0.00 3.13
3726 4414 6.266330 CAGAAGAGTCATTTTCCCTTTTTCCT 59.734 38.462 0.00 0.00 0.00 3.36
3727 4415 6.841229 AGAAGAGTCATTTTCCCTTTTTCCTT 59.159 34.615 0.00 0.00 0.00 3.36
3733 4421 7.552687 AGTCATTTTCCCTTTTTCCTTTTTCAC 59.447 33.333 0.00 0.00 0.00 3.18
3735 4423 7.885399 TCATTTTCCCTTTTTCCTTTTTCACAA 59.115 29.630 0.00 0.00 0.00 3.33
3736 4424 8.518702 CATTTTCCCTTTTTCCTTTTTCACAAA 58.481 29.630 0.00 0.00 0.00 2.83
3851 4548 5.984926 TGAAGCAATTTTCATCCAACACTTC 59.015 36.000 0.00 0.00 32.39 3.01
3889 4586 8.836268 AATATGAACATTCACAAAATGCAACT 57.164 26.923 0.00 0.00 40.49 3.16
3941 4638 8.845227 TCAGTTCTCAAACATGCAAATTACTAA 58.155 29.630 0.00 0.00 37.88 2.24
3953 4650 9.814899 CATGCAAATTACTAAAACATGGGAATA 57.185 29.630 0.00 0.00 31.93 1.75
3963 4660 8.164070 ACTAAAACATGGGAATACAGAGAACTT 58.836 33.333 0.00 0.00 0.00 2.66
3980 4677 3.263489 ACTTGCATCATCTGAGAGTGG 57.737 47.619 0.00 0.00 0.00 4.00
4040 4742 3.129988 AGCCAAACATTTGAGATAGCAGC 59.870 43.478 5.91 0.00 40.55 5.25
4051 4753 1.267261 AGATAGCAGCGCTACGTAAGG 59.733 52.381 10.99 0.00 44.24 2.69
4078 4780 5.882000 ACTGCATAGTGAAATCATGCTACAA 59.118 36.000 7.24 0.00 44.27 2.41
4149 4852 5.715070 ACACTGTGCTAAGAGCTTAGTAAG 58.285 41.667 16.24 5.47 42.97 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.226059 AGGTTCCTAATTTGAGGTATGGAAT 57.774 36.000 0.00 0.00 37.88 3.01
3 4 5.132144 GGAGGTTCCTAATTTGAGGTATGGA 59.868 44.000 0.00 0.00 37.88 3.41
4 5 5.104109 TGGAGGTTCCTAATTTGAGGTATGG 60.104 44.000 0.00 0.00 37.46 2.74
5 6 6.001449 TGGAGGTTCCTAATTTGAGGTATG 57.999 41.667 0.00 0.00 37.46 2.39
6 7 6.848562 ATGGAGGTTCCTAATTTGAGGTAT 57.151 37.500 0.00 0.00 37.46 2.73
7 8 7.947782 ATATGGAGGTTCCTAATTTGAGGTA 57.052 36.000 0.00 0.00 37.46 3.08
8 9 6.848562 ATATGGAGGTTCCTAATTTGAGGT 57.151 37.500 0.00 0.00 37.46 3.85
9 10 9.813826 AATAATATGGAGGTTCCTAATTTGAGG 57.186 33.333 0.00 0.00 37.46 3.86
15 16 9.686683 GCATGTAATAATATGGAGGTTCCTAAT 57.313 33.333 0.00 0.00 37.46 1.73
16 17 8.664992 TGCATGTAATAATATGGAGGTTCCTAA 58.335 33.333 0.00 0.00 37.46 2.69
17 18 8.213489 TGCATGTAATAATATGGAGGTTCCTA 57.787 34.615 0.00 0.00 37.46 2.94
18 19 7.090319 TGCATGTAATAATATGGAGGTTCCT 57.910 36.000 0.00 0.00 37.46 3.36
19 20 7.230510 TGTTGCATGTAATAATATGGAGGTTCC 59.769 37.037 0.00 0.00 36.96 3.62
20 21 8.076178 GTGTTGCATGTAATAATATGGAGGTTC 58.924 37.037 0.00 0.00 0.00 3.62
21 22 7.559533 TGTGTTGCATGTAATAATATGGAGGTT 59.440 33.333 0.00 0.00 0.00 3.50
22 23 7.059788 TGTGTTGCATGTAATAATATGGAGGT 58.940 34.615 0.00 0.00 0.00 3.85
23 24 7.509141 TGTGTTGCATGTAATAATATGGAGG 57.491 36.000 0.00 0.00 0.00 4.30
24 25 7.080099 GCTGTGTTGCATGTAATAATATGGAG 58.920 38.462 0.00 0.00 0.00 3.86
25 26 6.293353 CGCTGTGTTGCATGTAATAATATGGA 60.293 38.462 0.00 0.00 0.00 3.41
26 27 5.852755 CGCTGTGTTGCATGTAATAATATGG 59.147 40.000 0.00 0.00 0.00 2.74
27 28 6.657888 TCGCTGTGTTGCATGTAATAATATG 58.342 36.000 0.00 0.00 0.00 1.78
28 29 6.859420 TCGCTGTGTTGCATGTAATAATAT 57.141 33.333 0.00 0.00 0.00 1.28
29 30 6.705825 AGATCGCTGTGTTGCATGTAATAATA 59.294 34.615 0.00 0.00 0.00 0.98
30 31 5.528690 AGATCGCTGTGTTGCATGTAATAAT 59.471 36.000 0.00 0.00 0.00 1.28
31 32 4.875536 AGATCGCTGTGTTGCATGTAATAA 59.124 37.500 0.00 0.00 0.00 1.40
32 33 4.441792 AGATCGCTGTGTTGCATGTAATA 58.558 39.130 0.00 0.00 0.00 0.98
33 34 3.273434 AGATCGCTGTGTTGCATGTAAT 58.727 40.909 0.00 0.00 0.00 1.89
34 35 2.698803 AGATCGCTGTGTTGCATGTAA 58.301 42.857 0.00 0.00 0.00 2.41
35 36 2.385013 AGATCGCTGTGTTGCATGTA 57.615 45.000 0.00 0.00 0.00 2.29
36 37 1.527034 AAGATCGCTGTGTTGCATGT 58.473 45.000 0.00 0.00 0.00 3.21
37 38 2.095617 TCAAAGATCGCTGTGTTGCATG 60.096 45.455 0.00 0.00 30.97 4.06
38 39 2.153645 TCAAAGATCGCTGTGTTGCAT 58.846 42.857 0.00 0.00 30.97 3.96
39 40 1.532437 CTCAAAGATCGCTGTGTTGCA 59.468 47.619 0.00 0.00 30.97 4.08
40 41 1.727213 GCTCAAAGATCGCTGTGTTGC 60.727 52.381 0.00 0.00 30.97 4.17
41 42 1.463034 CGCTCAAAGATCGCTGTGTTG 60.463 52.381 0.00 0.00 30.97 3.33
42 43 0.792640 CGCTCAAAGATCGCTGTGTT 59.207 50.000 0.00 0.00 30.97 3.32
43 44 1.016130 CCGCTCAAAGATCGCTGTGT 61.016 55.000 0.00 0.00 30.97 3.72
44 45 0.737367 TCCGCTCAAAGATCGCTGTG 60.737 55.000 0.00 0.00 0.00 3.66
45 46 0.459237 CTCCGCTCAAAGATCGCTGT 60.459 55.000 0.00 0.00 0.00 4.40
46 47 1.760268 GCTCCGCTCAAAGATCGCTG 61.760 60.000 0.00 0.00 0.00 5.18
47 48 1.520342 GCTCCGCTCAAAGATCGCT 60.520 57.895 0.00 0.00 0.00 4.93
48 49 1.086634 AAGCTCCGCTCAAAGATCGC 61.087 55.000 0.00 0.00 38.25 4.58
49 50 0.926846 GAAGCTCCGCTCAAAGATCG 59.073 55.000 0.00 0.00 38.25 3.69
50 51 0.926846 CGAAGCTCCGCTCAAAGATC 59.073 55.000 0.00 0.00 38.25 2.75
51 52 0.247736 ACGAAGCTCCGCTCAAAGAT 59.752 50.000 0.00 0.00 38.25 2.40
52 53 0.388649 GACGAAGCTCCGCTCAAAGA 60.389 55.000 0.00 0.00 38.25 2.52
53 54 1.355066 GGACGAAGCTCCGCTCAAAG 61.355 60.000 0.00 0.00 38.25 2.77
54 55 1.374252 GGACGAAGCTCCGCTCAAA 60.374 57.895 0.00 0.00 38.25 2.69
55 56 2.261671 GGACGAAGCTCCGCTCAA 59.738 61.111 0.00 0.00 38.25 3.02
56 57 4.116328 CGGACGAAGCTCCGCTCA 62.116 66.667 0.00 0.00 42.11 4.26
57 58 4.856607 CCGGACGAAGCTCCGCTC 62.857 72.222 6.60 0.00 45.13 5.03
59 60 4.736896 AACCGGACGAAGCTCCGC 62.737 66.667 9.46 0.00 45.13 5.54
60 61 2.506438 GAACCGGACGAAGCTCCG 60.506 66.667 9.46 5.18 45.70 4.63
61 62 2.125633 GGAACCGGACGAAGCTCC 60.126 66.667 9.46 0.00 0.00 4.70
62 63 2.506438 CGGAACCGGACGAAGCTC 60.506 66.667 9.46 0.00 35.56 4.09
63 64 4.736896 GCGGAACCGGACGAAGCT 62.737 66.667 9.46 0.00 40.19 3.74
64 65 4.736896 AGCGGAACCGGACGAAGC 62.737 66.667 9.46 7.04 40.19 3.86
65 66 2.506438 GAGCGGAACCGGACGAAG 60.506 66.667 9.46 0.00 40.19 3.79
66 67 4.060038 GGAGCGGAACCGGACGAA 62.060 66.667 9.46 0.00 40.19 3.85
87 88 3.606065 AACGACGGAACCGAGCGAG 62.606 63.158 27.26 14.29 42.83 5.03
88 89 3.599792 GAACGACGGAACCGAGCGA 62.600 63.158 27.26 0.00 42.83 4.93
89 90 3.170585 GAACGACGGAACCGAGCG 61.171 66.667 20.14 21.49 42.83 5.03
90 91 2.808321 GGAACGACGGAACCGAGC 60.808 66.667 20.14 9.98 42.83 5.03
91 92 2.126189 GGGAACGACGGAACCGAG 60.126 66.667 20.14 14.49 42.83 4.63
92 93 2.277591 ATGGGAACGACGGAACCGA 61.278 57.895 20.14 0.00 42.83 4.69
93 94 2.098233 CATGGGAACGACGGAACCG 61.098 63.158 11.83 11.83 46.03 4.44
94 95 1.004200 ACATGGGAACGACGGAACC 60.004 57.895 0.00 0.00 0.00 3.62
95 96 1.017701 GGACATGGGAACGACGGAAC 61.018 60.000 0.00 0.00 0.00 3.62
96 97 1.294138 GGACATGGGAACGACGGAA 59.706 57.895 0.00 0.00 0.00 4.30
97 98 2.975536 GGACATGGGAACGACGGA 59.024 61.111 0.00 0.00 0.00 4.69
98 99 2.508439 CGGACATGGGAACGACGG 60.508 66.667 0.00 0.00 0.00 4.79
99 100 2.508439 CCGGACATGGGAACGACG 60.508 66.667 0.00 0.00 0.00 5.12
100 101 2.818274 GCCGGACATGGGAACGAC 60.818 66.667 5.05 0.00 0.00 4.34
101 102 4.444838 CGCCGGACATGGGAACGA 62.445 66.667 5.05 0.00 0.00 3.85
122 123 1.078143 CACTCTAAGGGGTGCAGCC 60.078 63.158 27.04 27.04 0.00 4.85
123 124 0.036875 AACACTCTAAGGGGTGCAGC 59.963 55.000 7.55 7.55 36.99 5.25
124 125 1.611673 CCAACACTCTAAGGGGTGCAG 60.612 57.143 0.00 0.00 34.19 4.41
125 126 0.400213 CCAACACTCTAAGGGGTGCA 59.600 55.000 0.00 0.00 34.19 4.57
126 127 0.400594 ACCAACACTCTAAGGGGTGC 59.599 55.000 0.00 0.00 34.19 5.01
127 128 2.779506 GAACCAACACTCTAAGGGGTG 58.220 52.381 0.00 0.00 35.67 4.61
128 129 1.346722 CGAACCAACACTCTAAGGGGT 59.653 52.381 0.00 0.00 0.00 4.95
129 130 1.338769 CCGAACCAACACTCTAAGGGG 60.339 57.143 0.00 0.00 0.00 4.79
130 131 1.944430 GCCGAACCAACACTCTAAGGG 60.944 57.143 0.00 0.00 0.00 3.95
131 132 1.270625 TGCCGAACCAACACTCTAAGG 60.271 52.381 0.00 0.00 0.00 2.69
132 133 1.798813 GTGCCGAACCAACACTCTAAG 59.201 52.381 0.00 0.00 0.00 2.18
133 134 1.870580 CGTGCCGAACCAACACTCTAA 60.871 52.381 0.00 0.00 32.07 2.10
134 135 0.319211 CGTGCCGAACCAACACTCTA 60.319 55.000 0.00 0.00 32.07 2.43
135 136 1.594293 CGTGCCGAACCAACACTCT 60.594 57.895 0.00 0.00 32.07 3.24
136 137 1.557443 CTCGTGCCGAACCAACACTC 61.557 60.000 0.00 0.00 34.74 3.51
137 138 1.594293 CTCGTGCCGAACCAACACT 60.594 57.895 0.00 0.00 34.74 3.55
138 139 2.935955 CTCGTGCCGAACCAACAC 59.064 61.111 0.00 0.00 34.74 3.32
139 140 2.970324 GCTCGTGCCGAACCAACA 60.970 61.111 0.00 0.00 34.74 3.33
140 141 2.665185 AGCTCGTGCCGAACCAAC 60.665 61.111 5.73 0.00 40.80 3.77
141 142 2.664851 CAGCTCGTGCCGAACCAA 60.665 61.111 5.73 0.00 40.80 3.67
142 143 4.680237 CCAGCTCGTGCCGAACCA 62.680 66.667 5.73 0.00 40.80 3.67
143 144 4.681978 ACCAGCTCGTGCCGAACC 62.682 66.667 5.73 0.00 40.80 3.62
144 145 3.414700 CACCAGCTCGTGCCGAAC 61.415 66.667 5.73 0.00 40.80 3.95
145 146 3.611674 TCACCAGCTCGTGCCGAA 61.612 61.111 6.59 0.00 40.80 4.30
146 147 4.357947 GTCACCAGCTCGTGCCGA 62.358 66.667 6.59 0.00 40.80 5.54
329 354 4.572571 AACCCCTTCGTTGGCGCA 62.573 61.111 10.83 0.00 38.14 6.09
362 387 1.429463 GTTCATCTGGCGTTCGAACT 58.571 50.000 24.80 3.14 34.51 3.01
368 393 2.031919 TGCGGTTCATCTGGCGTT 59.968 55.556 0.00 0.00 0.00 4.84
469 495 1.519234 GCATGACATCGCTCGGACA 60.519 57.895 0.00 0.00 0.00 4.02
479 505 1.077212 GGAGGCCTGTGCATGACAT 60.077 57.895 12.00 0.00 40.13 3.06
526 552 2.272797 CCGAGGAGGAGACGACCT 59.727 66.667 0.00 0.00 45.00 3.85
529 555 4.816984 GCCCCGAGGAGGAGACGA 62.817 72.222 0.00 0.00 45.00 4.20
553 579 1.476085 CTGTCGACTCCAAGCTCATCT 59.524 52.381 17.92 0.00 0.00 2.90
562 588 1.683319 CCTCCAGATCTGTCGACTCCA 60.683 57.143 21.11 0.29 0.00 3.86
565 591 1.004862 TCACCTCCAGATCTGTCGACT 59.995 52.381 21.11 0.00 0.00 4.18
572 598 3.262915 CCAAGTCTTTCACCTCCAGATCT 59.737 47.826 0.00 0.00 0.00 2.75
587 613 1.078143 GGGCAGCGAATCCAAGTCT 60.078 57.895 0.00 0.00 0.00 3.24
615 641 3.071023 CCTTCCGGCCATCTACAATTCTA 59.929 47.826 2.24 0.00 0.00 2.10
643 669 2.147387 AGCCACCCAACCTCGTCTT 61.147 57.895 0.00 0.00 0.00 3.01
661 687 0.191064 ACTTCACTCCACTCCCCTCA 59.809 55.000 0.00 0.00 0.00 3.86
685 721 0.321346 TGCTCGCCTGATCAAACTCA 59.679 50.000 0.00 0.00 0.00 3.41
687 723 0.610174 TCTGCTCGCCTGATCAAACT 59.390 50.000 0.00 0.00 0.00 2.66
693 729 1.145598 CACCATCTGCTCGCCTGAT 59.854 57.895 0.00 0.00 32.96 2.90
696 732 2.236223 CTCACACCATCTGCTCGCCT 62.236 60.000 0.00 0.00 0.00 5.52
710 746 2.796193 CCGCCATCCCGATCTCACA 61.796 63.158 0.00 0.00 0.00 3.58
712 748 3.928779 GCCGCCATCCCGATCTCA 61.929 66.667 0.00 0.00 0.00 3.27
714 750 2.822637 AATGCCGCCATCCCGATCT 61.823 57.895 0.00 0.00 0.00 2.75
759 807 1.533469 GCGGATATAGGGGCGTCTGT 61.533 60.000 0.00 0.00 0.00 3.41
763 811 1.982938 GAGGCGGATATAGGGGCGT 60.983 63.158 0.00 0.00 0.00 5.68
770 818 7.123383 TCCAGAGTAAATATGAGGCGGATATA 58.877 38.462 0.00 0.00 0.00 0.86
789 837 2.632028 CAGACACCCCTCATATCCAGAG 59.368 54.545 0.00 0.00 0.00 3.35
790 838 2.023015 ACAGACACCCCTCATATCCAGA 60.023 50.000 0.00 0.00 0.00 3.86
807 855 4.446385 CACTTAAACGTCCGAATTGACAGA 59.554 41.667 0.00 0.00 34.88 3.41
809 857 4.121317 ACACTTAAACGTCCGAATTGACA 58.879 39.130 0.00 0.00 34.88 3.58
814 862 5.064962 TCAAACAACACTTAAACGTCCGAAT 59.935 36.000 0.00 0.00 0.00 3.34
816 864 3.931468 TCAAACAACACTTAAACGTCCGA 59.069 39.130 0.00 0.00 0.00 4.55
820 868 4.389687 ACGTCTCAAACAACACTTAAACGT 59.610 37.500 0.00 0.00 35.10 3.99
826 874 6.537301 TCAAATAGACGTCTCAAACAACACTT 59.463 34.615 23.89 0.00 0.00 3.16
827 875 6.046593 TCAAATAGACGTCTCAAACAACACT 58.953 36.000 23.89 0.00 0.00 3.55
828 876 6.018994 ACTCAAATAGACGTCTCAAACAACAC 60.019 38.462 23.89 0.00 0.00 3.32
829 877 6.046593 ACTCAAATAGACGTCTCAAACAACA 58.953 36.000 23.89 1.38 0.00 3.33
830 878 6.526566 ACTCAAATAGACGTCTCAAACAAC 57.473 37.500 23.89 0.00 0.00 3.32
831 879 8.651391 TTAACTCAAATAGACGTCTCAAACAA 57.349 30.769 23.89 3.13 0.00 2.83
832 880 8.651391 TTTAACTCAAATAGACGTCTCAAACA 57.349 30.769 23.89 4.01 0.00 2.83
838 886 9.394477 GCAAAATTTTAACTCAAATAGACGTCT 57.606 29.630 23.66 23.66 0.00 4.18
839 887 8.355806 CGCAAAATTTTAACTCAAATAGACGTC 58.644 33.333 7.70 7.70 0.00 4.34
840 888 8.071368 TCGCAAAATTTTAACTCAAATAGACGT 58.929 29.630 2.44 0.00 0.00 4.34
841 889 8.429739 TCGCAAAATTTTAACTCAAATAGACG 57.570 30.769 2.44 0.00 0.00 4.18
847 895 8.480853 CGGTTTATCGCAAAATTTTAACTCAAA 58.519 29.630 2.44 0.00 0.00 2.69
848 896 7.861372 TCGGTTTATCGCAAAATTTTAACTCAA 59.139 29.630 2.44 0.00 0.00 3.02
849 897 7.361127 TCGGTTTATCGCAAAATTTTAACTCA 58.639 30.769 2.44 0.00 0.00 3.41
850 898 7.461026 GCTCGGTTTATCGCAAAATTTTAACTC 60.461 37.037 2.44 0.00 0.00 3.01
851 899 6.307077 GCTCGGTTTATCGCAAAATTTTAACT 59.693 34.615 2.44 0.00 0.00 2.24
852 900 6.455202 GCTCGGTTTATCGCAAAATTTTAAC 58.545 36.000 2.44 3.51 0.00 2.01
853 901 5.284188 CGCTCGGTTTATCGCAAAATTTTAA 59.716 36.000 2.44 0.00 0.00 1.52
854 902 4.789119 CGCTCGGTTTATCGCAAAATTTTA 59.211 37.500 2.44 0.00 0.00 1.52
855 903 3.606346 CGCTCGGTTTATCGCAAAATTTT 59.394 39.130 0.00 0.00 0.00 1.82
856 904 3.168193 CGCTCGGTTTATCGCAAAATTT 58.832 40.909 0.00 0.00 0.00 1.82
857 905 2.780993 CGCTCGGTTTATCGCAAAATT 58.219 42.857 0.00 0.00 0.00 1.82
858 906 1.531058 GCGCTCGGTTTATCGCAAAAT 60.531 47.619 0.00 0.00 45.99 1.82
859 907 0.179210 GCGCTCGGTTTATCGCAAAA 60.179 50.000 0.00 0.00 45.99 2.44
860 908 1.422269 GCGCTCGGTTTATCGCAAA 59.578 52.632 0.00 0.00 45.99 3.68
861 909 3.086309 GCGCTCGGTTTATCGCAA 58.914 55.556 0.00 0.00 45.99 4.85
863 911 3.984765 CGGCGCTCGGTTTATCGC 61.985 66.667 7.64 0.00 45.99 4.58
881 929 2.198304 CTACACCAGGGGCTCCAACC 62.198 65.000 4.79 0.00 34.83 3.77
882 930 1.198759 TCTACACCAGGGGCTCCAAC 61.199 60.000 4.79 0.00 34.83 3.77
883 931 0.253160 ATCTACACCAGGGGCTCCAA 60.253 55.000 4.79 0.00 34.83 3.53
884 932 0.982852 CATCTACACCAGGGGCTCCA 60.983 60.000 4.79 0.00 34.83 3.86
885 933 1.832912 CATCTACACCAGGGGCTCC 59.167 63.158 0.00 0.00 0.00 4.70
886 934 1.147153 GCATCTACACCAGGGGCTC 59.853 63.158 0.00 0.00 0.00 4.70
887 935 1.307343 AGCATCTACACCAGGGGCT 60.307 57.895 0.00 0.00 31.70 5.19
888 936 1.147153 GAGCATCTACACCAGGGGC 59.853 63.158 0.00 0.00 0.00 5.80
900 948 2.935201 CTGTCAGCCTTGTAAGAGCATC 59.065 50.000 7.49 0.00 0.00 3.91
901 949 2.304180 ACTGTCAGCCTTGTAAGAGCAT 59.696 45.455 0.00 0.00 0.00 3.79
902 950 1.694150 ACTGTCAGCCTTGTAAGAGCA 59.306 47.619 0.00 0.00 0.00 4.26
903 951 2.289072 TGACTGTCAGCCTTGTAAGAGC 60.289 50.000 6.36 0.00 0.00 4.09
904 952 3.667497 TGACTGTCAGCCTTGTAAGAG 57.333 47.619 6.36 0.00 0.00 2.85
905 953 4.415881 TTTGACTGTCAGCCTTGTAAGA 57.584 40.909 10.77 0.00 0.00 2.10
906 954 4.154918 GGATTTGACTGTCAGCCTTGTAAG 59.845 45.833 10.77 0.00 0.00 2.34
907 955 4.072131 GGATTTGACTGTCAGCCTTGTAA 58.928 43.478 10.77 1.07 0.00 2.41
908 956 3.327757 AGGATTTGACTGTCAGCCTTGTA 59.672 43.478 17.70 0.00 0.00 2.41
909 957 2.107204 AGGATTTGACTGTCAGCCTTGT 59.893 45.455 17.70 3.33 0.00 3.16
910 958 2.486982 CAGGATTTGACTGTCAGCCTTG 59.513 50.000 19.68 12.27 0.00 3.61
911 959 2.553904 CCAGGATTTGACTGTCAGCCTT 60.554 50.000 19.68 5.85 34.16 4.35
912 960 1.004044 CCAGGATTTGACTGTCAGCCT 59.996 52.381 17.70 17.70 34.16 4.58
931 979 0.390472 CTCGCTCTTGGGTCTTCACC 60.390 60.000 0.00 0.00 42.90 4.02
940 988 0.177604 AGGATGCTTCTCGCTCTTGG 59.822 55.000 0.00 0.00 40.11 3.61
942 990 1.470632 CGAAGGATGCTTCTCGCTCTT 60.471 52.381 22.61 0.00 40.11 2.85
944 992 2.587574 CGAAGGATGCTTCTCGCTC 58.412 57.895 22.61 0.00 40.11 5.03
977 1025 4.235762 GCCCGGCGCCTCTTATCA 62.236 66.667 26.68 0.00 0.00 2.15
1147 1201 3.053896 CGGGGAACGGAAGGCAAC 61.054 66.667 0.00 0.00 39.42 4.17
1225 1279 1.009900 CGTCATCCTCGTAGTCGCC 60.010 63.158 0.00 0.00 36.96 5.54
1293 1347 1.471829 TTGCAACGAGCCTGGAGAGA 61.472 55.000 0.00 0.00 44.83 3.10
1341 1395 2.505405 CAATCGATACCTCTCCGGAGA 58.495 52.381 31.67 31.67 41.86 3.71
1371 1425 5.501156 CAAGGCTGAAGGAGTAAATTAGGT 58.499 41.667 0.00 0.00 0.00 3.08
1373 1427 5.189180 AGCAAGGCTGAAGGAGTAAATTAG 58.811 41.667 0.00 0.00 37.57 1.73
1374 1428 5.179452 AGCAAGGCTGAAGGAGTAAATTA 57.821 39.130 0.00 0.00 37.57 1.40
1386 1440 2.253758 GCACGTGAAGCAAGGCTGA 61.254 57.895 22.23 0.00 39.62 4.26
1388 1442 1.510480 GAAGCACGTGAAGCAAGGCT 61.510 55.000 22.23 2.81 42.56 4.58
1389 1443 1.081840 GAAGCACGTGAAGCAAGGC 60.082 57.895 22.23 0.00 0.00 4.35
1390 1444 0.236711 CAGAAGCACGTGAAGCAAGG 59.763 55.000 22.23 0.00 0.00 3.61
1391 1445 0.940126 ACAGAAGCACGTGAAGCAAG 59.060 50.000 22.23 6.26 0.00 4.01
1394 1448 1.221414 AGAACAGAAGCACGTGAAGC 58.779 50.000 22.23 3.46 0.00 3.86
1398 1452 1.528586 CTGGAAGAACAGAAGCACGTG 59.471 52.381 12.28 12.28 40.97 4.49
1400 1454 1.871080 ACTGGAAGAACAGAAGCACG 58.129 50.000 0.00 0.00 40.97 5.34
1424 1478 3.911661 ACAGCACAATCTTTTCTGAGC 57.088 42.857 0.00 0.00 0.00 4.26
1446 1501 4.122776 CGTGAGAGGCATATAAACAGCTT 58.877 43.478 0.00 0.00 0.00 3.74
1447 1502 3.133003 ACGTGAGAGGCATATAAACAGCT 59.867 43.478 0.00 0.00 0.00 4.24
1448 1503 3.458189 ACGTGAGAGGCATATAAACAGC 58.542 45.455 0.00 0.00 0.00 4.40
1449 1504 4.938080 AGACGTGAGAGGCATATAAACAG 58.062 43.478 0.00 0.00 0.00 3.16
1450 1505 4.401202 TGAGACGTGAGAGGCATATAAACA 59.599 41.667 0.00 0.00 0.00 2.83
1451 1506 4.933330 TGAGACGTGAGAGGCATATAAAC 58.067 43.478 0.00 0.00 0.00 2.01
1452 1507 5.791336 ATGAGACGTGAGAGGCATATAAA 57.209 39.130 0.00 0.00 0.00 1.40
1453 1508 5.791336 AATGAGACGTGAGAGGCATATAA 57.209 39.130 0.00 0.00 0.00 0.98
1454 1509 5.562890 CGAAATGAGACGTGAGAGGCATATA 60.563 44.000 0.00 0.00 0.00 0.86
1455 1510 4.626042 GAAATGAGACGTGAGAGGCATAT 58.374 43.478 0.00 0.00 0.00 1.78
1467 1522 9.831054 GTTACTGTAAAATATCGAAATGAGACG 57.169 33.333 1.10 0.00 0.00 4.18
1508 1595 5.097742 ACAGCAGCACAATAAGGTGTATA 57.902 39.130 0.00 0.00 40.48 1.47
1509 1596 3.955471 ACAGCAGCACAATAAGGTGTAT 58.045 40.909 0.00 0.00 40.48 2.29
1529 1616 7.527084 AGCTCGATTTCTAGACAAACATAAC 57.473 36.000 0.00 0.00 0.00 1.89
1532 1619 6.402222 AGAAGCTCGATTTCTAGACAAACAT 58.598 36.000 9.79 0.00 33.30 2.71
1599 1686 4.880886 TGATATTTTGGTGACATCAGCG 57.119 40.909 6.59 0.00 46.53 5.18
1648 1735 3.496870 GGGAGACACTCACAAAATGGACT 60.497 47.826 0.00 0.00 33.47 3.85
1690 1777 7.672239 TCCCAAACAGCACTAAACCTTATAAAT 59.328 33.333 0.00 0.00 0.00 1.40
1694 1783 4.765339 GTCCCAAACAGCACTAAACCTTAT 59.235 41.667 0.00 0.00 0.00 1.73
1695 1784 4.139038 GTCCCAAACAGCACTAAACCTTA 58.861 43.478 0.00 0.00 0.00 2.69
1696 1785 2.956333 GTCCCAAACAGCACTAAACCTT 59.044 45.455 0.00 0.00 0.00 3.50
1811 1901 6.312399 TGTCGAAATCAGCTTACAAAATGT 57.688 33.333 0.00 0.00 0.00 2.71
1868 1965 0.393537 CCTTCCAGTCCCTGCATCAC 60.394 60.000 0.00 0.00 0.00 3.06
1932 2031 5.103000 GTCACGCATCTACATTACTCACTT 58.897 41.667 0.00 0.00 0.00 3.16
2013 2112 2.618241 TGTATGAAGCGGATGCCATTTC 59.382 45.455 0.00 0.00 44.31 2.17
2131 2231 1.045911 GGGTTTTGGACAGGCACCAA 61.046 55.000 6.70 6.70 44.27 3.67
2134 2234 0.831711 ATGGGGTTTTGGACAGGCAC 60.832 55.000 0.00 0.00 0.00 5.01
2220 2320 4.889409 CAGCCTCCTTTTTGCCTATTATCA 59.111 41.667 0.00 0.00 0.00 2.15
2272 2372 4.346418 ACCCTATCTGTGACATGAGGATTC 59.654 45.833 0.00 0.00 0.00 2.52
2404 2506 5.376625 TGTTGCTAGTGAGAAACCAAATCT 58.623 37.500 0.00 0.00 40.21 2.40
2457 2560 0.475044 AAGGGCCAACGTACAGGAAA 59.525 50.000 6.18 0.00 0.00 3.13
2554 2657 5.631119 ACCCTGTACTTAATCAACAGCTTT 58.369 37.500 0.00 0.00 39.42 3.51
2561 2664 9.005777 GTTAACATCAACCCTGTACTTAATCAA 57.994 33.333 0.00 0.00 0.00 2.57
2673 2776 1.381928 CCAGCCATCCTGCATGACAC 61.382 60.000 0.00 0.00 40.36 3.67
2707 2810 4.335874 TCTCGATTTCTACTCTGTACTGCC 59.664 45.833 0.00 0.00 0.00 4.85
2912 3015 3.347216 AGTTGTGCAGTGGATATGAACC 58.653 45.455 0.00 0.00 0.00 3.62
2927 3030 5.409643 AGAACGTCAAGATTCAAGTTGTG 57.590 39.130 2.11 0.00 0.00 3.33
2984 3658 8.247562 CAGTAGCTTATGAGTTCAGAGTAAAGT 58.752 37.037 0.00 0.00 0.00 2.66
3291 3967 4.181578 CGAACAATCGGAGTAATCACCTT 58.818 43.478 0.00 0.00 45.32 3.50
3313 3989 1.280457 AGGAGGGATCAACAGTCCAC 58.720 55.000 0.00 0.00 37.49 4.02
3327 4003 1.133976 AGAATCCGGATGCAAAGGAGG 60.134 52.381 24.87 3.18 37.49 4.30
3492 4168 4.336433 CCCAAGGCATGATGTACAAACTAG 59.664 45.833 0.00 0.00 0.00 2.57
3497 4173 3.668141 ATCCCAAGGCATGATGTACAA 57.332 42.857 0.00 0.00 0.00 2.41
3552 4229 2.169352 CCACCAACTGAGATACCCTCTG 59.831 54.545 0.00 0.00 43.83 3.35
3553 4230 2.225650 ACCACCAACTGAGATACCCTCT 60.226 50.000 0.00 0.00 42.44 3.69
3554 4231 2.188817 ACCACCAACTGAGATACCCTC 58.811 52.381 0.00 0.00 42.30 4.30
3573 4250 7.630924 CCAGCTTTATGCAGTTACAGTATAAC 58.369 38.462 0.00 0.00 45.94 1.89
3576 4253 4.576463 GCCAGCTTTATGCAGTTACAGTAT 59.424 41.667 0.00 0.00 45.94 2.12
3585 4262 2.410469 GCGGCCAGCTTTATGCAG 59.590 61.111 2.24 0.00 45.94 4.41
3597 4274 0.179156 CAATCACAACATCTGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
3601 4278 3.058293 TCCGAAACAATCACAACATCTGC 60.058 43.478 0.00 0.00 0.00 4.26
3609 4286 2.035449 ACTCGTCTCCGAAACAATCACA 59.965 45.455 0.00 0.00 43.69 3.58
3610 4287 2.673833 ACTCGTCTCCGAAACAATCAC 58.326 47.619 0.00 0.00 43.69 3.06
3611 4288 3.057019 CAACTCGTCTCCGAAACAATCA 58.943 45.455 0.00 0.00 43.69 2.57
3612 4289 2.412089 CCAACTCGTCTCCGAAACAATC 59.588 50.000 0.00 0.00 43.69 2.67
3613 4290 2.224209 ACCAACTCGTCTCCGAAACAAT 60.224 45.455 0.00 0.00 43.69 2.71
3614 4291 1.137479 ACCAACTCGTCTCCGAAACAA 59.863 47.619 0.00 0.00 43.69 2.83
3615 4292 0.748450 ACCAACTCGTCTCCGAAACA 59.252 50.000 0.00 0.00 43.69 2.83
3616 4293 2.712057 TACCAACTCGTCTCCGAAAC 57.288 50.000 0.00 0.00 43.69 2.78
3635 4319 7.609918 TGTTGCAATCATGTAGTAACTGGTAAT 59.390 33.333 0.59 0.00 0.00 1.89
3699 4387 6.890979 AAAAGGGAAAATGACTCTTCTGAG 57.109 37.500 0.00 0.00 45.43 3.35
3724 4412 8.731275 AAAATTAGGTTCCTTTGTGAAAAAGG 57.269 30.769 7.87 7.87 46.28 3.11
3726 4414 9.726438 TGAAAAATTAGGTTCCTTTGTGAAAAA 57.274 25.926 0.00 0.00 0.00 1.94
3727 4415 9.898152 ATGAAAAATTAGGTTCCTTTGTGAAAA 57.102 25.926 0.00 0.00 0.00 2.29
3778 4466 9.157104 CTTTTGTACACAATAACTTTTTGGGTT 57.843 29.630 5.33 0.00 37.42 4.11
3779 4467 8.315482 ACTTTTGTACACAATAACTTTTTGGGT 58.685 29.630 0.00 5.36 42.99 4.51
3780 4468 8.710835 ACTTTTGTACACAATAACTTTTTGGG 57.289 30.769 0.00 0.00 35.55 4.12
3851 4548 7.914871 TGAATGTTCATATTTACGCAAATCTGG 59.085 33.333 0.00 0.00 32.68 3.86
3889 4586 6.546428 TTTCTGTTTGGAAATTGGTACCAA 57.454 33.333 28.95 28.95 41.12 3.67
3941 4638 5.183904 GCAAGTTCTCTGTATTCCCATGTTT 59.816 40.000 0.00 0.00 0.00 2.83
3953 4650 4.222366 TCTCAGATGATGCAAGTTCTCTGT 59.778 41.667 12.10 0.00 33.53 3.41
3963 4660 2.429971 GAGTCCACTCTCAGATGATGCA 59.570 50.000 0.00 0.00 39.81 3.96
3980 4677 7.565323 AAATTCTGGAAGATTGCTATGAGTC 57.435 36.000 0.00 0.00 46.36 3.36
4040 4742 0.099968 TGCAGTAGCCTTACGTAGCG 59.900 55.000 0.00 0.00 41.13 4.26
4051 4753 4.781071 GCATGATTTCACTATGCAGTAGC 58.219 43.478 0.00 0.00 44.88 3.58
4078 4780 8.538701 TGGATTTGTGCCATTTCTATACATTTT 58.461 29.630 0.00 0.00 0.00 1.82
4149 4852 6.091305 GCAAGAGGAATAAGCAATTTTGGAAC 59.909 38.462 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.