Multiple sequence alignment - TraesCS7D01G194100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G194100 chr7D 100.000 3373 0 0 1 3373 150933177 150936549 0.000000e+00 6229.0
1 TraesCS7D01G194100 chr7B 90.612 1896 115 28 1498 3373 113096114 113097966 0.000000e+00 2457.0
2 TraesCS7D01G194100 chr7B 88.026 1094 59 34 369 1457 113095079 113096105 0.000000e+00 1229.0
3 TraesCS7D01G194100 chr4B 90.680 1588 86 19 1816 3373 402984753 402986308 0.000000e+00 2056.0
4 TraesCS7D01G194100 chr4B 85.112 806 50 32 369 1170 402983704 402984443 0.000000e+00 760.0
5 TraesCS7D01G194100 chr4B 84.536 291 28 11 1498 1785 402984476 402984752 4.290000e-69 272.0
6 TraesCS7D01G194100 chr4B 89.500 200 20 1 56 254 402983035 402983234 5.590000e-63 252.0
7 TraesCS7D01G194100 chr4B 76.190 168 39 1 17 184 501249274 501249108 1.670000e-13 87.9
8 TraesCS7D01G194100 chr7A 89.419 1446 74 30 1498 2917 150881030 150882422 0.000000e+00 1749.0
9 TraesCS7D01G194100 chr7A 90.832 829 45 16 656 1457 150880197 150881021 0.000000e+00 1081.0
10 TraesCS7D01G194100 chr7A 93.564 404 18 2 2970 3373 150882442 150882837 2.240000e-166 595.0
11 TraesCS7D01G194100 chr7A 83.957 374 51 4 2 375 150877024 150877388 1.930000e-92 350.0
12 TraesCS7D01G194100 chr1B 77.326 172 39 0 13 184 687298555 687298384 5.950000e-18 102.0
13 TraesCS7D01G194100 chr5A 78.912 147 29 2 16 161 567044991 567044846 7.700000e-17 99.0
14 TraesCS7D01G194100 chr6A 79.167 144 26 2 1 140 101829801 101829944 2.770000e-16 97.1
15 TraesCS7D01G194100 chr1D 76.087 184 38 4 1 184 213374088 213374265 1.290000e-14 91.6
16 TraesCS7D01G194100 chr5B 77.551 147 33 0 15 161 642956947 642957093 4.640000e-14 89.8
17 TraesCS7D01G194100 chr3B 97.368 38 1 0 1464 1501 64003162 64003199 7.810000e-07 65.8
18 TraesCS7D01G194100 chr3B 90.000 50 5 0 13 62 141973561 141973512 7.810000e-07 65.8
19 TraesCS7D01G194100 chr4D 95.122 41 1 1 12 52 117405594 117405633 2.810000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G194100 chr7D 150933177 150936549 3372 False 6229.00 6229 100.000 1 3373 1 chr7D.!!$F1 3372
1 TraesCS7D01G194100 chr7B 113095079 113097966 2887 False 1843.00 2457 89.319 369 3373 2 chr7B.!!$F1 3004
2 TraesCS7D01G194100 chr4B 402983035 402986308 3273 False 835.00 2056 87.457 56 3373 4 chr4B.!!$F1 3317
3 TraesCS7D01G194100 chr7A 150877024 150882837 5813 False 943.75 1749 89.443 2 3373 4 chr7A.!!$F1 3371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 244 0.173708 CCTCGAGTACAAGGCTCCAC 59.826 60.0 12.31 0.0 0.0 4.02 F
953 3943 0.465460 CCCTCTCTCTCGACTCCCAG 60.465 65.0 0.00 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 4366 0.471191 TCAGCTCCATGCCGATCATT 59.529 50.0 0.0 0.0 44.23 2.57 R
2918 5996 0.179156 GGCCGCAGATGTTGTGATTG 60.179 55.0 0.0 0.0 39.74 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.194597 GGCAACACCCCAGACACA 59.805 61.111 0.00 0.00 0.00 3.72
41 42 1.247567 CCCCAGACACACCATCAAAC 58.752 55.000 0.00 0.00 0.00 2.93
46 47 4.248859 CCAGACACACCATCAAACTCTAG 58.751 47.826 0.00 0.00 0.00 2.43
77 78 0.881600 CCGCTCGATGATGATGCCAA 60.882 55.000 0.00 0.00 0.00 4.52
149 150 1.750682 GCCATCTTCCATTTACCGCCT 60.751 52.381 0.00 0.00 0.00 5.52
163 164 0.249489 CCGCCTATGTAGACCACTGC 60.249 60.000 0.00 0.00 0.00 4.40
176 177 0.811616 CCACTGCCTACATTCGCTCC 60.812 60.000 0.00 0.00 0.00 4.70
185 186 3.255888 CCTACATTCGCTCCTGCACTATA 59.744 47.826 0.00 0.00 39.64 1.31
199 200 6.051717 CCTGCACTATACTAAGCTTGTTGAT 58.948 40.000 9.86 0.00 0.00 2.57
228 230 0.818296 GCTCTAACTTGCTCCCTCGA 59.182 55.000 0.00 0.00 0.00 4.04
229 231 1.202359 GCTCTAACTTGCTCCCTCGAG 60.202 57.143 5.13 5.13 39.33 4.04
242 244 0.173708 CCTCGAGTACAAGGCTCCAC 59.826 60.000 12.31 0.00 0.00 4.02
244 246 1.133407 CTCGAGTACAAGGCTCCACTC 59.867 57.143 3.62 11.19 35.20 3.51
263 265 1.138859 TCAGAGAGAGAGAGAGAGCCG 59.861 57.143 0.00 0.00 0.00 5.52
266 268 2.123897 AGAGAGAGAGAGCCGGGC 60.124 66.667 12.11 12.11 0.00 6.13
278 703 2.124901 CCGGGCCGCAGATTAACA 60.125 61.111 23.20 0.00 0.00 2.41
279 704 1.747367 CCGGGCCGCAGATTAACAA 60.747 57.895 23.20 0.00 0.00 2.83
300 725 6.389091 ACAATGCACGATGATTATTGTTTGT 58.611 32.000 0.00 2.17 38.42 2.83
315 740 2.816672 TGTTTGTGAGCTTGTTGTGTCA 59.183 40.909 0.00 0.00 0.00 3.58
355 780 4.079844 TGACTCATGGGCCAAGAAATATGA 60.080 41.667 11.89 6.97 0.00 2.15
367 792 5.450965 CCAAGAAATATGACCATGCAGGAAC 60.451 44.000 0.00 0.00 41.22 3.62
411 2433 4.641645 CTGGCCAAGTGGACCGCA 62.642 66.667 7.01 0.00 44.80 5.69
413 2435 4.643387 GGCCAAGTGGACCGCAGT 62.643 66.667 7.99 0.00 37.19 4.40
414 2436 3.050275 GCCAAGTGGACCGCAGTC 61.050 66.667 7.99 0.00 42.73 3.51
415 2437 2.743718 CCAAGTGGACCGCAGTCT 59.256 61.111 7.99 0.00 43.05 3.24
416 2438 1.669115 CCAAGTGGACCGCAGTCTG 60.669 63.158 7.99 0.00 43.05 3.51
417 2439 2.031163 AAGTGGACCGCAGTCTGC 59.969 61.111 15.22 15.22 43.05 4.26
418 2440 2.511452 AAGTGGACCGCAGTCTGCT 61.511 57.895 22.13 4.68 42.25 4.24
419 2441 2.031163 GTGGACCGCAGTCTGCTT 59.969 61.111 22.13 9.29 42.25 3.91
427 2449 3.060615 CAGTCTGCTTGCCTGCCC 61.061 66.667 0.00 0.00 0.00 5.36
448 2470 1.738099 GATCACACGTGCTCGGCTT 60.738 57.895 17.22 0.00 41.85 4.35
449 2471 1.959899 GATCACACGTGCTCGGCTTG 61.960 60.000 17.22 4.45 41.85 4.01
461 2483 4.643387 GGCTTGTCACGGGCCTGT 62.643 66.667 12.85 12.85 42.31 4.00
463 2485 2.743718 CTTGTCACGGGCCTGTCT 59.256 61.111 16.42 0.00 0.00 3.41
464 2486 1.071471 CTTGTCACGGGCCTGTCTT 59.929 57.895 16.42 0.00 0.00 3.01
590 2626 1.209128 CAGCCCGTATGAGCTAAACG 58.791 55.000 7.74 7.74 37.18 3.60
597 2633 1.327764 GTATGAGCTAAACGTGCAGCC 59.672 52.381 15.84 9.54 38.61 4.85
599 2635 2.740714 GAGCTAAACGTGCAGCCGG 61.741 63.158 15.84 0.00 38.61 6.13
600 2636 3.047877 GCTAAACGTGCAGCCGGT 61.048 61.111 1.90 0.00 0.00 5.28
623 2659 1.272258 GCCTGTTTACTAAAGGGGCCA 60.272 52.381 4.39 0.00 34.88 5.36
652 2688 3.573491 GGAGGCGCGGCACAATAC 61.573 66.667 34.94 11.19 0.00 1.89
653 2689 3.925238 GAGGCGCGGCACAATACG 61.925 66.667 34.94 0.00 0.00 3.06
932 3922 3.688159 CGACCCCCGGTTCGTCTT 61.688 66.667 0.00 0.00 35.25 3.01
953 3943 0.465460 CCCTCTCTCTCGACTCCCAG 60.465 65.000 0.00 0.00 0.00 4.45
954 3944 1.101049 CCTCTCTCTCGACTCCCAGC 61.101 65.000 0.00 0.00 0.00 4.85
969 3959 1.515088 CAGCACTACTCGCGTCCAG 60.515 63.158 5.77 3.93 0.00 3.86
982 3989 4.819761 TCCAGTGCGCCGATGCTC 62.820 66.667 4.18 0.00 35.36 4.26
995 4002 1.877680 CGATGCTCACCAGGTGTTTGA 60.878 52.381 19.65 0.00 34.79 2.69
1007 4014 3.129287 CAGGTGTTTGATGTAATGCCTCC 59.871 47.826 0.00 0.00 0.00 4.30
1359 4366 1.898154 GCTCTTCCCCGACAAGCTA 59.102 57.895 0.00 0.00 0.00 3.32
1433 4440 3.684693 GCTTTGCTGCCTGGAAAAA 57.315 47.368 0.00 0.00 35.61 1.94
1434 4441 1.505425 GCTTTGCTGCCTGGAAAAAG 58.495 50.000 0.00 0.00 35.61 2.27
1436 4443 2.742856 GCTTTGCTGCCTGGAAAAAGTT 60.743 45.455 0.00 0.00 35.61 2.66
1438 4445 4.301628 CTTTGCTGCCTGGAAAAAGTTAG 58.698 43.478 0.00 0.00 35.61 2.34
1442 4449 3.069586 GCTGCCTGGAAAAAGTTAGGTTT 59.930 43.478 0.00 0.00 32.85 3.27
1446 4453 5.303333 TGCCTGGAAAAAGTTAGGTTTAAGG 59.697 40.000 0.00 0.00 32.85 2.69
1458 4465 8.849543 AGTTAGGTTTAAGGGTATAGTCATCA 57.150 34.615 0.00 0.00 0.00 3.07
1459 4466 9.448587 AGTTAGGTTTAAGGGTATAGTCATCAT 57.551 33.333 0.00 0.00 0.00 2.45
1462 4469 7.908453 AGGTTTAAGGGTATAGTCATCATAGC 58.092 38.462 0.00 0.00 0.00 2.97
1463 4470 7.512746 AGGTTTAAGGGTATAGTCATCATAGCA 59.487 37.037 0.00 0.00 0.00 3.49
1464 4471 7.603024 GGTTTAAGGGTATAGTCATCATAGCAC 59.397 40.741 0.00 0.00 0.00 4.40
1465 4472 8.368668 GTTTAAGGGTATAGTCATCATAGCACT 58.631 37.037 0.00 0.00 0.00 4.40
1466 4473 9.596308 TTTAAGGGTATAGTCATCATAGCACTA 57.404 33.333 0.00 0.00 0.00 2.74
1467 4474 9.596308 TTAAGGGTATAGTCATCATAGCACTAA 57.404 33.333 0.00 0.00 0.00 2.24
1468 4475 8.492415 AAGGGTATAGTCATCATAGCACTAAA 57.508 34.615 0.00 0.00 0.00 1.85
1469 4476 8.492415 AGGGTATAGTCATCATAGCACTAAAA 57.508 34.615 0.00 0.00 0.00 1.52
1470 4477 8.368668 AGGGTATAGTCATCATAGCACTAAAAC 58.631 37.037 0.00 0.00 0.00 2.43
1471 4478 7.603024 GGGTATAGTCATCATAGCACTAAAACC 59.397 40.741 0.00 0.00 34.72 3.27
1472 4479 8.148351 GGTATAGTCATCATAGCACTAAAACCA 58.852 37.037 0.00 0.00 35.14 3.67
1473 4480 9.712305 GTATAGTCATCATAGCACTAAAACCAT 57.288 33.333 0.00 0.00 0.00 3.55
1474 4481 6.932356 AGTCATCATAGCACTAAAACCATG 57.068 37.500 0.00 0.00 0.00 3.66
1475 4482 6.653020 AGTCATCATAGCACTAAAACCATGA 58.347 36.000 0.00 0.00 0.00 3.07
1476 4483 6.540189 AGTCATCATAGCACTAAAACCATGAC 59.460 38.462 0.00 0.00 38.48 3.06
1477 4484 6.316140 GTCATCATAGCACTAAAACCATGACA 59.684 38.462 0.00 0.00 38.22 3.58
1478 4485 6.883756 TCATCATAGCACTAAAACCATGACAA 59.116 34.615 0.00 0.00 0.00 3.18
1479 4486 7.557358 TCATCATAGCACTAAAACCATGACAAT 59.443 33.333 0.00 0.00 0.00 2.71
1480 4487 8.839343 CATCATAGCACTAAAACCATGACAATA 58.161 33.333 0.00 0.00 0.00 1.90
1481 4488 8.800370 TCATAGCACTAAAACCATGACAATAA 57.200 30.769 0.00 0.00 0.00 1.40
1482 4489 9.407380 TCATAGCACTAAAACCATGACAATAAT 57.593 29.630 0.00 0.00 0.00 1.28
1486 4493 9.206870 AGCACTAAAACCATGACAATAATTTTG 57.793 29.630 0.00 0.00 0.00 2.44
1487 4494 8.442384 GCACTAAAACCATGACAATAATTTTGG 58.558 33.333 0.00 0.00 0.00 3.28
1488 4495 9.703892 CACTAAAACCATGACAATAATTTTGGA 57.296 29.630 0.00 0.00 0.00 3.53
1492 4499 8.564509 AAACCATGACAATAATTTTGGAATGG 57.435 30.769 20.14 20.14 39.93 3.16
1494 4501 7.558604 ACCATGACAATAATTTTGGAATGGAG 58.441 34.615 23.94 12.06 38.07 3.86
1495 4502 6.987992 CCATGACAATAATTTTGGAATGGAGG 59.012 38.462 18.74 0.00 38.07 4.30
1496 4503 6.543430 TGACAATAATTTTGGAATGGAGGG 57.457 37.500 0.00 0.00 0.00 4.30
1509 4516 4.506802 GGAATGGAGGGAGTAACAACAAGT 60.507 45.833 0.00 0.00 0.00 3.16
1512 4519 3.071023 TGGAGGGAGTAACAACAAGTGAG 59.929 47.826 0.00 0.00 0.00 3.51
1513 4520 3.557264 GGAGGGAGTAACAACAAGTGAGG 60.557 52.174 0.00 0.00 0.00 3.86
1518 4525 5.535030 GGGAGTAACAACAAGTGAGGAAAAT 59.465 40.000 0.00 0.00 0.00 1.82
1521 4531 8.290325 GGAGTAACAACAAGTGAGGAAAATTAG 58.710 37.037 0.00 0.00 0.00 1.73
1531 4541 8.778358 CAAGTGAGGAAAATTAGCATATACTCC 58.222 37.037 0.00 0.00 0.00 3.85
1532 4542 7.454225 AGTGAGGAAAATTAGCATATACTCCC 58.546 38.462 0.00 0.00 0.00 4.30
1570 4580 3.719268 AACTGCAAGGTCATGGACATA 57.281 42.857 0.00 0.00 39.30 2.29
1579 4589 7.161404 GCAAGGTCATGGACATAGATACATAA 58.839 38.462 0.00 0.00 33.68 1.90
1608 4618 3.825143 AAATGTATTTGCCATCCCTGC 57.175 42.857 0.00 0.00 0.00 4.85
1625 4635 2.422519 CCTGCTGGAGTGCCTGATATTT 60.423 50.000 2.92 0.00 35.28 1.40
1626 4636 2.617308 CTGCTGGAGTGCCTGATATTTG 59.383 50.000 0.00 0.00 35.28 2.32
1627 4637 1.336125 GCTGGAGTGCCTGATATTTGC 59.664 52.381 0.00 0.00 35.28 3.68
1630 4640 3.698040 CTGGAGTGCCTGATATTTGCTTT 59.302 43.478 0.00 0.00 35.28 3.51
1634 4660 3.448660 AGTGCCTGATATTTGCTTTTCCC 59.551 43.478 0.00 0.00 0.00 3.97
1643 4669 8.055279 TGATATTTGCTTTTCCCAGTAAGAAG 57.945 34.615 0.00 0.00 0.00 2.85
1720 4749 9.829507 ATTTGATTTGTTTTAAGACAATGGACA 57.170 25.926 11.92 7.67 39.12 4.02
1754 4783 5.973651 CTACAGAAGCATGCTTAATCGAA 57.026 39.130 32.02 14.65 36.26 3.71
1759 4788 5.793952 CAGAAGCATGCTTAATCGAATATGC 59.206 40.000 32.02 15.06 37.59 3.14
1793 4823 4.776349 ACCATGGATTTGTACATAGCGAA 58.224 39.130 21.47 0.00 0.00 4.70
1806 4836 6.480651 TGTACATAGCGAAAGAAGTGAAAACA 59.519 34.615 0.00 0.00 0.00 2.83
1811 4841 3.253432 GCGAAAGAAGTGAAAACATCCCT 59.747 43.478 0.00 0.00 0.00 4.20
1824 4854 8.360390 GTGAAAACATCCCTTCTTTCAAACTAT 58.640 33.333 0.00 0.00 38.97 2.12
1857 4887 8.818141 CTCAAGTTGAGTAGTTCATAGTTCAA 57.182 34.615 22.48 0.00 39.58 2.69
1858 4888 9.261180 CTCAAGTTGAGTAGTTCATAGTTCAAA 57.739 33.333 22.48 0.00 39.58 2.69
1859 4889 9.261180 TCAAGTTGAGTAGTTCATAGTTCAAAG 57.739 33.333 0.08 0.00 35.27 2.77
1860 4890 9.046296 CAAGTTGAGTAGTTCATAGTTCAAAGT 57.954 33.333 0.00 0.00 35.27 2.66
1861 4891 9.614792 AAGTTGAGTAGTTCATAGTTCAAAGTT 57.385 29.630 0.00 0.00 35.27 2.66
1862 4892 9.262358 AGTTGAGTAGTTCATAGTTCAAAGTTC 57.738 33.333 0.00 0.00 35.27 3.01
1863 4893 9.042008 GTTGAGTAGTTCATAGTTCAAAGTTCA 57.958 33.333 0.00 0.00 35.27 3.18
1864 4894 9.607988 TTGAGTAGTTCATAGTTCAAAGTTCAA 57.392 29.630 0.00 0.00 35.27 2.69
1865 4895 9.261180 TGAGTAGTTCATAGTTCAAAGTTCAAG 57.739 33.333 0.00 0.00 0.00 3.02
1866 4896 8.608844 AGTAGTTCATAGTTCAAAGTTCAAGG 57.391 34.615 0.00 0.00 0.00 3.61
1867 4897 8.211629 AGTAGTTCATAGTTCAAAGTTCAAGGT 58.788 33.333 0.00 0.00 0.00 3.50
1868 4898 7.264373 AGTTCATAGTTCAAAGTTCAAGGTG 57.736 36.000 0.00 0.00 0.00 4.00
1869 4899 5.689383 TCATAGTTCAAAGTTCAAGGTGC 57.311 39.130 0.00 0.00 0.00 5.01
1870 4900 5.129634 TCATAGTTCAAAGTTCAAGGTGCA 58.870 37.500 0.00 0.00 0.00 4.57
1871 4901 5.592282 TCATAGTTCAAAGTTCAAGGTGCAA 59.408 36.000 0.00 0.00 0.00 4.08
2229 5287 1.420138 TGGAGAAACACCCACTCTTCC 59.580 52.381 0.00 0.00 0.00 3.46
2385 5443 6.091305 GCAAGAGGAATAAGCAATTTTGGAAC 59.909 38.462 0.00 0.00 0.00 3.62
2456 5515 8.538701 TGGATTTGTGCCATTTCTATACATTTT 58.461 29.630 0.00 0.00 0.00 1.82
2483 5542 4.781071 GCATGATTTCACTATGCAGTAGC 58.219 43.478 0.00 0.00 44.88 3.58
2494 5553 0.099968 TGCAGTAGCCTTACGTAGCG 59.900 55.000 0.00 0.00 41.13 4.26
2527 5586 7.500892 TCTCAAATGTTTGGCTCTACTTTACAA 59.499 33.333 5.71 0.00 38.66 2.41
2554 5619 7.565323 AAATTCTGGAAGATTGCTATGAGTC 57.435 36.000 0.00 0.00 46.36 3.36
2571 5636 2.429971 GAGTCCACTCTCAGATGATGCA 59.570 50.000 0.00 0.00 39.81 3.96
2581 5646 4.222366 TCTCAGATGATGCAAGTTCTCTGT 59.778 41.667 12.10 0.00 33.53 3.41
2593 5658 5.183904 GCAAGTTCTCTGTATTCCCATGTTT 59.816 40.000 0.00 0.00 0.00 2.83
2645 5710 6.546428 TTTCTGTTTGGAAATTGGTACCAA 57.454 33.333 28.95 28.95 41.12 3.67
2683 5748 7.914871 TGAATGTTCATATTTACGCAAATCTGG 59.085 33.333 0.00 0.00 32.68 3.86
2703 5768 4.630111 TGGAAGTGTTGGATGAAAATTGC 58.370 39.130 0.00 0.00 0.00 3.56
2754 5828 8.710835 ACTTTTGTACACAATAACTTTTTGGG 57.289 30.769 0.00 0.00 35.55 4.12
2755 5829 8.315482 ACTTTTGTACACAATAACTTTTTGGGT 58.685 29.630 0.00 5.36 42.99 4.51
2756 5830 9.157104 CTTTTGTACACAATAACTTTTTGGGTT 57.843 29.630 5.33 0.00 37.42 4.11
2810 5884 8.731275 AAAATTAGGTTCCTTTGTGAAAAAGG 57.269 30.769 7.87 7.87 46.28 3.11
2835 5909 6.890979 AAAAGGGAAAATGACTCTTCTGAG 57.109 37.500 0.00 0.00 45.43 3.35
2899 5977 7.609918 TGTTGCAATCATGTAGTAACTGGTAAT 59.390 33.333 0.59 0.00 0.00 1.89
2917 5995 3.947910 AATACCAACTCGTCTCCGAAA 57.052 42.857 0.00 0.00 43.69 3.46
2918 5996 2.712057 TACCAACTCGTCTCCGAAAC 57.288 50.000 0.00 0.00 43.69 2.78
2919 5997 0.748450 ACCAACTCGTCTCCGAAACA 59.252 50.000 0.00 0.00 43.69 2.83
2920 5998 1.137479 ACCAACTCGTCTCCGAAACAA 59.863 47.619 0.00 0.00 43.69 2.83
2921 5999 2.224209 ACCAACTCGTCTCCGAAACAAT 60.224 45.455 0.00 0.00 43.69 2.71
2922 6000 2.412089 CCAACTCGTCTCCGAAACAATC 59.588 50.000 0.00 0.00 43.69 2.67
2923 6001 3.057019 CAACTCGTCTCCGAAACAATCA 58.943 45.455 0.00 0.00 43.69 2.57
2924 6002 2.673833 ACTCGTCTCCGAAACAATCAC 58.326 47.619 0.00 0.00 43.69 3.06
2933 6018 3.058293 TCCGAAACAATCACAACATCTGC 60.058 43.478 0.00 0.00 0.00 4.26
2937 6022 0.179156 CAATCACAACATCTGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
2949 6034 2.410469 GCGGCCAGCTTTATGCAG 59.590 61.111 2.24 0.00 45.94 4.41
2958 6043 4.576463 GCCAGCTTTATGCAGTTACAGTAT 59.424 41.667 0.00 0.00 45.94 2.12
2961 6046 7.630924 CCAGCTTTATGCAGTTACAGTATAAC 58.369 38.462 0.00 0.00 45.94 1.89
2980 6065 2.188817 ACCACCAACTGAGATACCCTC 58.811 52.381 0.00 0.00 42.30 4.30
2982 6067 2.169352 CCACCAACTGAGATACCCTCTG 59.831 54.545 0.00 0.00 43.83 3.35
3037 6123 3.668141 ATCCCAAGGCATGATGTACAA 57.332 42.857 0.00 0.00 0.00 2.41
3042 6128 4.336433 CCCAAGGCATGATGTACAAACTAG 59.664 45.833 0.00 0.00 0.00 2.57
3207 6293 1.133976 AGAATCCGGATGCAAAGGAGG 60.134 52.381 24.87 3.18 37.49 4.30
3221 6307 1.280457 AGGAGGGATCAACAGTCCAC 58.720 55.000 0.00 0.00 37.49 4.02
3243 6329 4.181578 CGAACAATCGGAGTAATCACCTT 58.818 43.478 0.00 0.00 45.32 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.404040 TTGCCCCGACCAGATTCTTT 59.596 50.000 0.00 0.00 0.00 2.52
17 18 0.178992 ATGGTGTGTCTGGGGTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
25 26 5.139435 TCTAGAGTTTGATGGTGTGTCTG 57.861 43.478 0.00 0.00 0.00 3.51
28 29 5.337894 CCAGATCTAGAGTTTGATGGTGTGT 60.338 44.000 0.00 0.00 0.00 3.72
32 33 3.776969 TGCCAGATCTAGAGTTTGATGGT 59.223 43.478 0.00 0.00 0.00 3.55
41 42 1.467678 CGGGGGTGCCAGATCTAGAG 61.468 65.000 0.00 0.00 0.00 2.43
46 47 4.554036 GAGCGGGGGTGCCAGATC 62.554 72.222 0.00 0.00 34.65 2.75
77 78 4.880120 GCTAGCGGGTATAGTTTCCTTTTT 59.120 41.667 0.00 0.00 0.00 1.94
99 100 0.820871 TTGAGTTTGTGGTTGGTGGC 59.179 50.000 0.00 0.00 0.00 5.01
163 164 0.176680 AGTGCAGGAGCGAATGTAGG 59.823 55.000 0.00 0.00 46.23 3.18
176 177 7.545362 AATCAACAAGCTTAGTATAGTGCAG 57.455 36.000 0.00 0.00 0.00 4.41
185 186 6.516693 GCCAAAACCTAATCAACAAGCTTAGT 60.517 38.462 0.00 0.00 0.00 2.24
199 200 4.725490 AGCAAGTTAGAGCCAAAACCTAA 58.275 39.130 0.00 0.00 0.00 2.69
228 230 2.175202 CTCTGAGTGGAGCCTTGTACT 58.825 52.381 0.00 0.00 0.00 2.73
229 231 2.165437 CTCTCTGAGTGGAGCCTTGTAC 59.835 54.545 4.32 0.00 33.70 2.90
242 244 2.804572 CGGCTCTCTCTCTCTCTCTGAG 60.805 59.091 0.00 0.00 43.96 3.35
244 246 1.586422 CGGCTCTCTCTCTCTCTCTG 58.414 60.000 0.00 0.00 0.00 3.35
261 263 1.101049 ATTGTTAATCTGCGGCCCGG 61.101 55.000 4.77 0.00 0.00 5.73
262 264 0.029300 CATTGTTAATCTGCGGCCCG 59.971 55.000 0.00 0.00 0.00 6.13
263 265 0.249031 GCATTGTTAATCTGCGGCCC 60.249 55.000 0.00 0.00 0.00 5.80
266 268 1.396648 TCGTGCATTGTTAATCTGCGG 59.603 47.619 0.00 0.00 38.75 5.69
269 271 8.898792 CAATAATCATCGTGCATTGTTAATCTG 58.101 33.333 0.00 0.00 0.00 2.90
270 272 8.623903 ACAATAATCATCGTGCATTGTTAATCT 58.376 29.630 0.00 0.00 36.66 2.40
273 275 8.858186 CAAACAATAATCATCGTGCATTGTTAA 58.142 29.630 9.07 0.00 44.69 2.01
278 703 6.619744 TCACAAACAATAATCATCGTGCATT 58.380 32.000 0.00 0.00 0.00 3.56
279 704 6.193514 TCACAAACAATAATCATCGTGCAT 57.806 33.333 0.00 0.00 0.00 3.96
355 780 1.675641 GCTTCGGTTCCTGCATGGT 60.676 57.895 0.00 0.00 37.07 3.55
367 792 1.070134 TGGGAATATCTTCGGCTTCGG 59.930 52.381 0.00 0.00 31.75 4.30
411 2433 4.711949 CGGGCAGGCAAGCAGACT 62.712 66.667 4.37 0.00 33.98 3.24
415 2437 4.349503 ATCACGGGCAGGCAAGCA 62.350 61.111 4.37 0.00 35.83 3.91
416 2438 3.512516 GATCACGGGCAGGCAAGC 61.513 66.667 0.00 0.00 0.00 4.01
417 2439 2.046023 TGATCACGGGCAGGCAAG 60.046 61.111 0.00 0.00 0.00 4.01
418 2440 2.359850 GTGATCACGGGCAGGCAA 60.360 61.111 10.69 0.00 0.00 4.52
419 2441 3.635191 TGTGATCACGGGCAGGCA 61.635 61.111 20.54 0.00 0.00 4.75
448 2470 2.425592 CAAGACAGGCCCGTGACA 59.574 61.111 0.00 0.00 0.00 3.58
449 2471 2.358737 CCAAGACAGGCCCGTGAC 60.359 66.667 0.00 0.00 0.00 3.67
531 2553 4.145052 GGCTACTTGGGCTATTATTGCTT 58.855 43.478 0.00 0.00 0.00 3.91
534 2556 4.098914 TGGGCTACTTGGGCTATTATTG 57.901 45.455 0.00 0.00 0.00 1.90
535 2557 5.079643 CAATGGGCTACTTGGGCTATTATT 58.920 41.667 0.00 0.00 39.95 1.40
537 2559 3.181434 CCAATGGGCTACTTGGGCTATTA 60.181 47.826 0.00 0.00 39.95 0.98
540 2562 0.550914 CCAATGGGCTACTTGGGCTA 59.449 55.000 0.00 0.00 38.60 3.93
541 2563 1.307647 CCAATGGGCTACTTGGGCT 59.692 57.895 0.00 0.00 38.60 5.19
542 2564 3.939564 CCAATGGGCTACTTGGGC 58.060 61.111 0.00 0.00 38.60 5.36
577 2611 1.327764 GGCTGCACGTTTAGCTCATAC 59.672 52.381 17.41 0.91 39.80 2.39
578 2612 1.651987 GGCTGCACGTTTAGCTCATA 58.348 50.000 17.41 0.00 39.80 2.15
580 2614 2.027073 CGGCTGCACGTTTAGCTCA 61.027 57.895 17.41 0.00 39.80 4.26
581 2615 2.740714 CCGGCTGCACGTTTAGCTC 61.741 63.158 17.41 9.03 39.80 4.09
582 2616 2.742372 CCGGCTGCACGTTTAGCT 60.742 61.111 17.41 0.00 39.80 3.32
597 2633 1.997606 CTTTAGTAAACAGGCCGACCG 59.002 52.381 0.00 0.00 42.76 4.79
599 2635 2.353323 CCCTTTAGTAAACAGGCCGAC 58.647 52.381 0.00 0.00 0.00 4.79
600 2636 1.279846 CCCCTTTAGTAAACAGGCCGA 59.720 52.381 0.00 0.00 0.00 5.54
697 3684 2.241880 CGACGCGTGGGAACAAACT 61.242 57.895 20.70 0.00 46.06 2.66
907 3896 4.772231 CCGGGGGTCGAAGGAGGA 62.772 72.222 0.00 0.00 42.43 3.71
932 3922 0.256464 GGGAGTCGAGAGAGAGGGAA 59.744 60.000 0.00 0.00 43.49 3.97
982 3989 3.367292 GGCATTACATCAAACACCTGGTG 60.367 47.826 24.80 24.80 39.75 4.17
985 3992 3.129287 GGAGGCATTACATCAAACACCTG 59.871 47.826 0.00 0.00 0.00 4.00
995 4002 0.846693 GTCTGGGGGAGGCATTACAT 59.153 55.000 0.00 0.00 0.00 2.29
1119 4126 2.497770 GCCCGGTAGAAGCGCTTA 59.502 61.111 25.11 5.37 37.85 3.09
1359 4366 0.471191 TCAGCTCCATGCCGATCATT 59.529 50.000 0.00 0.00 44.23 2.57
1433 4440 8.849543 TGATGACTATACCCTTAAACCTAACT 57.150 34.615 0.00 0.00 0.00 2.24
1436 4443 9.032624 GCTATGATGACTATACCCTTAAACCTA 57.967 37.037 0.00 0.00 0.00 3.08
1438 4445 7.603024 GTGCTATGATGACTATACCCTTAAACC 59.397 40.741 0.00 0.00 0.00 3.27
1442 4449 9.596308 TTTAGTGCTATGATGACTATACCCTTA 57.404 33.333 0.00 0.00 0.00 2.69
1446 4453 8.148351 TGGTTTTAGTGCTATGATGACTATACC 58.852 37.037 0.00 0.00 32.79 2.73
1460 4467 9.206870 CAAAATTATTGTCATGGTTTTAGTGCT 57.793 29.630 0.00 0.00 0.00 4.40
1461 4468 8.442384 CCAAAATTATTGTCATGGTTTTAGTGC 58.558 33.333 0.00 0.00 0.00 4.40
1462 4469 9.703892 TCCAAAATTATTGTCATGGTTTTAGTG 57.296 29.630 0.00 0.00 0.00 2.74
1466 4473 9.012161 CCATTCCAAAATTATTGTCATGGTTTT 57.988 29.630 0.00 0.00 0.00 2.43
1467 4474 8.381636 TCCATTCCAAAATTATTGTCATGGTTT 58.618 29.630 16.82 0.00 32.80 3.27
1468 4475 7.915930 TCCATTCCAAAATTATTGTCATGGTT 58.084 30.769 16.82 0.00 32.80 3.67
1469 4476 7.364939 CCTCCATTCCAAAATTATTGTCATGGT 60.365 37.037 16.82 0.00 32.80 3.55
1470 4477 6.987992 CCTCCATTCCAAAATTATTGTCATGG 59.012 38.462 14.24 14.24 32.49 3.66
1471 4478 6.987992 CCCTCCATTCCAAAATTATTGTCATG 59.012 38.462 0.00 0.00 0.00 3.07
1472 4479 6.902416 TCCCTCCATTCCAAAATTATTGTCAT 59.098 34.615 0.00 0.00 0.00 3.06
1473 4480 6.259893 TCCCTCCATTCCAAAATTATTGTCA 58.740 36.000 0.00 0.00 0.00 3.58
1474 4481 6.381133 ACTCCCTCCATTCCAAAATTATTGTC 59.619 38.462 0.00 0.00 0.00 3.18
1475 4482 6.263754 ACTCCCTCCATTCCAAAATTATTGT 58.736 36.000 0.00 0.00 0.00 2.71
1476 4483 6.796785 ACTCCCTCCATTCCAAAATTATTG 57.203 37.500 0.00 0.00 0.00 1.90
1477 4484 7.898636 TGTTACTCCCTCCATTCCAAAATTATT 59.101 33.333 0.00 0.00 0.00 1.40
1478 4485 7.418378 TGTTACTCCCTCCATTCCAAAATTAT 58.582 34.615 0.00 0.00 0.00 1.28
1479 4486 6.795590 TGTTACTCCCTCCATTCCAAAATTA 58.204 36.000 0.00 0.00 0.00 1.40
1480 4487 5.650283 TGTTACTCCCTCCATTCCAAAATT 58.350 37.500 0.00 0.00 0.00 1.82
1481 4488 5.269554 TGTTACTCCCTCCATTCCAAAAT 57.730 39.130 0.00 0.00 0.00 1.82
1482 4489 4.733077 TGTTACTCCCTCCATTCCAAAA 57.267 40.909 0.00 0.00 0.00 2.44
1483 4490 4.141135 TGTTGTTACTCCCTCCATTCCAAA 60.141 41.667 0.00 0.00 0.00 3.28
1484 4491 3.396276 TGTTGTTACTCCCTCCATTCCAA 59.604 43.478 0.00 0.00 0.00 3.53
1485 4492 2.983192 TGTTGTTACTCCCTCCATTCCA 59.017 45.455 0.00 0.00 0.00 3.53
1486 4493 3.713826 TGTTGTTACTCCCTCCATTCC 57.286 47.619 0.00 0.00 0.00 3.01
1487 4494 4.455877 CACTTGTTGTTACTCCCTCCATTC 59.544 45.833 0.00 0.00 0.00 2.67
1488 4495 4.104102 TCACTTGTTGTTACTCCCTCCATT 59.896 41.667 0.00 0.00 0.00 3.16
1490 4497 3.042682 TCACTTGTTGTTACTCCCTCCA 58.957 45.455 0.00 0.00 0.00 3.86
1492 4499 3.323979 TCCTCACTTGTTGTTACTCCCTC 59.676 47.826 0.00 0.00 0.00 4.30
1494 4501 3.764237 TCCTCACTTGTTGTTACTCCC 57.236 47.619 0.00 0.00 0.00 4.30
1495 4502 6.635030 ATTTTCCTCACTTGTTGTTACTCC 57.365 37.500 0.00 0.00 0.00 3.85
1496 4503 7.803659 GCTAATTTTCCTCACTTGTTGTTACTC 59.196 37.037 0.00 0.00 0.00 2.59
1509 4516 7.387265 TGGGAGTATATGCTAATTTTCCTCA 57.613 36.000 0.00 0.00 0.00 3.86
1512 4519 8.465273 AAGTTGGGAGTATATGCTAATTTTCC 57.535 34.615 0.00 0.00 0.00 3.13
1518 4525 7.863722 TGGTAAAAGTTGGGAGTATATGCTAA 58.136 34.615 0.00 0.00 0.00 3.09
1521 4531 6.602009 ACTTGGTAAAAGTTGGGAGTATATGC 59.398 38.462 0.00 0.00 0.00 3.14
1531 4541 5.519722 CAGTTAGCACTTGGTAAAAGTTGG 58.480 41.667 2.54 0.00 39.36 3.77
1532 4542 4.976116 GCAGTTAGCACTTGGTAAAAGTTG 59.024 41.667 2.54 2.09 44.79 3.16
1585 4595 4.696455 CAGGGATGGCAAATACATTTTCC 58.304 43.478 0.00 0.00 34.30 3.13
1593 4603 0.925558 TCCAGCAGGGATGGCAAATA 59.074 50.000 0.00 0.00 42.15 1.40
1608 4618 2.928334 AGCAAATATCAGGCACTCCAG 58.072 47.619 0.00 0.00 34.60 3.86
1625 4635 6.605594 TCTTTTTCTTCTTACTGGGAAAAGCA 59.394 34.615 0.00 0.00 38.38 3.91
1626 4636 7.039313 TCTTTTTCTTCTTACTGGGAAAAGC 57.961 36.000 0.00 0.00 38.38 3.51
1627 4637 9.468532 CATTCTTTTTCTTCTTACTGGGAAAAG 57.531 33.333 0.00 0.00 38.38 2.27
1630 4640 6.549364 TGCATTCTTTTTCTTCTTACTGGGAA 59.451 34.615 0.00 0.00 0.00 3.97
1634 4660 8.807667 AATGTGCATTCTTTTTCTTCTTACTG 57.192 30.769 0.00 0.00 0.00 2.74
1708 4737 5.713025 CGGAAATTCATTGTCCATTGTCTT 58.287 37.500 0.00 0.00 0.00 3.01
1709 4738 4.380867 GCGGAAATTCATTGTCCATTGTCT 60.381 41.667 0.00 0.00 0.00 3.41
1712 4741 4.114058 AGCGGAAATTCATTGTCCATTG 57.886 40.909 0.00 0.00 0.00 2.82
1720 4749 4.622701 GCTTCTGTAGCGGAAATTCATT 57.377 40.909 0.00 0.00 40.71 2.57
1835 4865 9.614792 AACTTTGAACTATGAACTACTCAACTT 57.385 29.630 0.00 0.00 37.67 2.66
1850 4880 6.463995 AATTGCACCTTGAACTTTGAACTA 57.536 33.333 0.00 0.00 0.00 2.24
1853 4883 7.495901 TCATAAATTGCACCTTGAACTTTGAA 58.504 30.769 0.00 0.00 0.00 2.69
1854 4884 7.048629 TCATAAATTGCACCTTGAACTTTGA 57.951 32.000 0.00 0.00 0.00 2.69
1855 4885 7.894376 ATCATAAATTGCACCTTGAACTTTG 57.106 32.000 0.00 0.00 0.00 2.77
1856 4886 8.149647 TCAATCATAAATTGCACCTTGAACTTT 58.850 29.630 0.00 0.00 0.00 2.66
1857 4887 7.669427 TCAATCATAAATTGCACCTTGAACTT 58.331 30.769 0.00 0.00 0.00 2.66
1858 4888 7.230849 TCAATCATAAATTGCACCTTGAACT 57.769 32.000 0.00 0.00 0.00 3.01
1859 4889 8.385111 CAATCAATCATAAATTGCACCTTGAAC 58.615 33.333 0.00 0.00 0.00 3.18
1860 4890 8.095792 ACAATCAATCATAAATTGCACCTTGAA 58.904 29.630 0.00 0.00 34.47 2.69
1861 4891 7.613585 ACAATCAATCATAAATTGCACCTTGA 58.386 30.769 0.00 0.00 34.47 3.02
1862 4892 7.837202 ACAATCAATCATAAATTGCACCTTG 57.163 32.000 0.00 0.00 34.47 3.61
1863 4893 8.851541 AAACAATCAATCATAAATTGCACCTT 57.148 26.923 0.00 0.00 34.47 3.50
1864 4894 8.723311 CAAAACAATCAATCATAAATTGCACCT 58.277 29.630 0.00 0.00 34.47 4.00
1865 4895 8.505625 ACAAAACAATCAATCATAAATTGCACC 58.494 29.630 0.00 0.00 34.47 5.01
1866 4896 9.881529 AACAAAACAATCAATCATAAATTGCAC 57.118 25.926 0.00 0.00 34.47 4.57
1905 4947 5.386958 TTGACATACTCAGTCACCTGTAC 57.613 43.478 0.00 0.00 44.95 2.90
2385 5443 5.715070 ACACTGTGCTAAGAGCTTAGTAAG 58.285 41.667 16.24 5.47 42.97 2.34
2456 5515 5.882000 ACTGCATAGTGAAATCATGCTACAA 59.118 36.000 7.24 0.00 44.27 2.41
2483 5542 1.267261 AGATAGCAGCGCTACGTAAGG 59.733 52.381 10.99 0.00 44.24 2.69
2494 5553 3.129988 AGCCAAACATTTGAGATAGCAGC 59.870 43.478 5.91 0.00 40.55 5.25
2554 5619 3.263489 ACTTGCATCATCTGAGAGTGG 57.737 47.619 0.00 0.00 0.00 4.00
2571 5636 8.164070 ACTAAAACATGGGAATACAGAGAACTT 58.836 33.333 0.00 0.00 0.00 2.66
2581 5646 9.814899 CATGCAAATTACTAAAACATGGGAATA 57.185 29.630 0.00 0.00 31.93 1.75
2593 5658 8.845227 TCAGTTCTCAAACATGCAAATTACTAA 58.155 29.630 0.00 0.00 37.88 2.24
2645 5710 8.836268 AATATGAACATTCACAAAATGCAACT 57.164 26.923 0.00 0.00 40.49 3.16
2683 5748 5.984926 TGAAGCAATTTTCATCCAACACTTC 59.015 36.000 0.00 0.00 32.39 3.01
2703 5768 8.864069 ATCTCTCTTTATGTCAACGTATGAAG 57.136 34.615 0.00 0.00 40.50 3.02
2798 5872 8.518702 CATTTTCCCTTTTTCCTTTTTCACAAA 58.481 29.630 0.00 0.00 0.00 2.83
2799 5873 7.885399 TCATTTTCCCTTTTTCCTTTTTCACAA 59.115 29.630 0.00 0.00 0.00 3.33
2801 5875 7.552687 AGTCATTTTCCCTTTTTCCTTTTTCAC 59.447 33.333 0.00 0.00 0.00 3.18
2809 5883 6.265422 TCAGAAGAGTCATTTTCCCTTTTTCC 59.735 38.462 0.00 0.00 0.00 3.13
2810 5884 7.277174 TCAGAAGAGTCATTTTCCCTTTTTC 57.723 36.000 0.00 0.00 0.00 2.29
2811 5885 7.282332 CTCAGAAGAGTCATTTTCCCTTTTT 57.718 36.000 0.00 0.00 37.11 1.94
2812 5886 6.890979 CTCAGAAGAGTCATTTTCCCTTTT 57.109 37.500 0.00 0.00 37.11 2.27
2835 5909 9.567848 TGATTGTTTTTCTTCAAACTGTAGAAC 57.432 29.630 0.00 0.00 34.29 3.01
2913 5991 2.904319 CGCAGATGTTGTGATTGTTTCG 59.096 45.455 0.00 0.00 39.74 3.46
2917 5995 0.523072 GCCGCAGATGTTGTGATTGT 59.477 50.000 0.00 0.00 39.74 2.71
2918 5996 0.179156 GGCCGCAGATGTTGTGATTG 60.179 55.000 0.00 0.00 39.74 2.67
2919 5997 0.608856 TGGCCGCAGATGTTGTGATT 60.609 50.000 0.00 0.00 39.74 2.57
2920 5998 1.002257 TGGCCGCAGATGTTGTGAT 60.002 52.632 0.00 0.00 39.74 3.06
2921 5999 1.672030 CTGGCCGCAGATGTTGTGA 60.672 57.895 0.00 0.00 39.74 3.58
2922 6000 2.872557 CTGGCCGCAGATGTTGTG 59.127 61.111 0.00 0.00 37.04 3.33
2923 6001 3.058160 GCTGGCCGCAGATGTTGT 61.058 61.111 13.61 0.00 38.92 3.32
2924 6002 1.870055 AAAGCTGGCCGCAGATGTTG 61.870 55.000 19.30 0.00 42.61 3.33
2933 6018 1.064060 GTAACTGCATAAAGCTGGCCG 59.936 52.381 0.00 0.00 45.49 6.13
2937 6022 7.279981 TGGTTATACTGTAACTGCATAAAGCTG 59.720 37.037 0.00 0.00 45.94 4.24
2946 6031 5.121768 CAGTTGGTGGTTATACTGTAACTGC 59.878 44.000 0.00 0.00 37.86 4.40
2949 6034 6.694447 TCTCAGTTGGTGGTTATACTGTAAC 58.306 40.000 0.00 0.00 39.16 2.50
2958 6043 3.773119 GAGGGTATCTCAGTTGGTGGTTA 59.227 47.826 0.00 0.00 42.02 2.85
2961 6046 2.169352 CAGAGGGTATCTCAGTTGGTGG 59.831 54.545 0.00 0.00 44.81 4.61
2987 6072 5.417580 GTGGGCATACAGGAAATCAAACTAA 59.582 40.000 0.00 0.00 0.00 2.24
3037 6123 3.771479 TCTCATGGACATGCTGTCTAGTT 59.229 43.478 7.41 0.00 46.19 2.24
3042 6128 2.703416 TGTTCTCATGGACATGCTGTC 58.297 47.619 7.41 7.52 46.23 3.51
3207 6293 2.163818 TGTTCGTGGACTGTTGATCC 57.836 50.000 0.00 0.00 36.70 3.36
3221 6307 3.782046 AGGTGATTACTCCGATTGTTCG 58.218 45.455 0.00 0.00 45.08 3.95
3233 6319 6.107343 GGGAACTCTGTCTTAAGGTGATTAC 58.893 44.000 1.85 0.00 0.00 1.89
3243 6329 6.017192 AGTAGAACATGGGAACTCTGTCTTA 58.983 40.000 0.00 0.00 0.00 2.10
3285 6371 4.511454 TCTGACAAAAGTTCGAGACAATGG 59.489 41.667 0.00 0.00 0.00 3.16
3287 6373 5.584649 TGTTCTGACAAAAGTTCGAGACAAT 59.415 36.000 0.00 0.00 31.49 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.