Multiple sequence alignment - TraesCS7D01G193800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G193800 chr7D 100.000 2675 0 0 1 2675 150832910 150835584 0.000000e+00 4940.0
1 TraesCS7D01G193800 chr7D 87.444 223 21 4 389 606 610584828 610585048 1.590000e-62 250.0
2 TraesCS7D01G193800 chr7D 94.495 109 4 2 1805 1912 570160746 570160639 1.650000e-37 167.0
3 TraesCS7D01G193800 chr7D 91.818 110 7 2 1804 1912 120722209 120722317 4.610000e-33 152.0
4 TraesCS7D01G193800 chr7B 93.777 1832 62 26 6 1806 112889969 112891779 0.000000e+00 2704.0
5 TraesCS7D01G193800 chr7B 92.462 398 10 3 2014 2403 112891778 112892163 3.890000e-153 551.0
6 TraesCS7D01G193800 chr7B 88.830 188 19 1 2488 2675 248554176 248553991 2.070000e-56 230.0
7 TraesCS7D01G193800 chr7B 83.730 252 30 8 378 623 63543418 63543664 7.450000e-56 228.0
8 TraesCS7D01G193800 chr7B 90.741 108 9 1 1911 2018 484625515 484625621 2.780000e-30 143.0
9 TraesCS7D01G193800 chr7B 100.000 54 0 0 2422 2475 112892161 112892214 1.690000e-17 100.0
10 TraesCS7D01G193800 chr7B 93.182 44 3 0 118 161 682232543 682232586 6.180000e-07 65.8
11 TraesCS7D01G193800 chr4B 97.436 936 20 3 875 1806 402867480 402868415 0.000000e+00 1592.0
12 TraesCS7D01G193800 chr4B 97.274 807 17 4 875 1677 402842635 402843440 0.000000e+00 1363.0
13 TraesCS7D01G193800 chr4B 91.940 670 34 3 2014 2675 402858321 402858978 0.000000e+00 920.0
14 TraesCS7D01G193800 chr4B 91.505 671 36 4 2014 2675 402868414 402869072 0.000000e+00 904.0
15 TraesCS7D01G193800 chr4B 93.878 147 9 0 1660 1806 402858176 402858322 3.470000e-54 222.0
16 TraesCS7D01G193800 chr4B 90.826 109 8 2 1911 2019 211982063 211982169 7.720000e-31 145.0
17 TraesCS7D01G193800 chr4B 79.372 223 30 10 376 586 667428315 667428533 2.780000e-30 143.0
18 TraesCS7D01G193800 chr4B 96.296 81 3 0 2233 2313 495566465 495566545 1.670000e-27 134.0
19 TraesCS7D01G193800 chr4B 89.216 102 9 2 1911 2011 535077826 535077726 2.800000e-25 126.0
20 TraesCS7D01G193800 chr5B 84.217 849 71 38 771 1597 631479603 631480410 0.000000e+00 767.0
21 TraesCS7D01G193800 chr5B 83.934 305 29 12 778 1074 629771524 629771816 9.430000e-70 274.0
22 TraesCS7D01G193800 chr5B 83.934 305 28 13 778 1074 626703861 626704152 3.390000e-69 272.0
23 TraesCS7D01G193800 chr5B 86.222 225 23 3 379 600 621298628 621298847 1.240000e-58 237.0
24 TraesCS7D01G193800 chr5B 89.759 166 16 1 1598 1763 631480651 631480815 7.500000e-51 211.0
25 TraesCS7D01G193800 chr5B 85.366 164 21 2 1 161 14945467 14945630 1.650000e-37 167.0
26 TraesCS7D01G193800 chr5B 94.681 94 4 1 1911 2004 26770415 26770507 7.720000e-31 145.0
27 TraesCS7D01G193800 chr5D 90.964 498 19 14 1109 1592 502702139 502702624 0.000000e+00 647.0
28 TraesCS7D01G193800 chr5D 78.251 446 48 31 778 1219 502666668 502667068 9.570000e-60 241.0
29 TraesCS7D01G193800 chr5D 88.325 197 21 2 2481 2675 404767253 404767449 4.450000e-58 235.0
30 TraesCS7D01G193800 chr5D 82.403 233 27 9 1231 1460 502698708 502698929 9.770000e-45 191.0
31 TraesCS7D01G193800 chr5D 90.476 105 10 0 1659 1763 502705944 502706048 3.590000e-29 139.0
32 TraesCS7D01G193800 chr5D 88.496 113 12 1 1903 2015 524326486 524326375 4.650000e-28 135.0
33 TraesCS7D01G193800 chr5A 87.650 583 30 20 1140 1719 631359813 631360356 8.070000e-180 640.0
34 TraesCS7D01G193800 chr5A 81.273 267 29 13 1201 1459 631354312 631354565 2.100000e-46 196.0
35 TraesCS7D01G193800 chr5A 77.616 344 30 26 873 1207 631353429 631353734 5.920000e-37 165.0
36 TraesCS7D01G193800 chr5A 86.364 154 11 6 809 953 631359298 631359450 2.760000e-35 159.0
37 TraesCS7D01G193800 chr5A 91.589 107 7 2 1911 2017 376541920 376542024 2.150000e-31 147.0
38 TraesCS7D01G193800 chr7A 87.660 235 23 5 378 610 64702567 64702337 4.390000e-68 268.0
39 TraesCS7D01G193800 chr7A 93.750 96 5 1 1911 2006 587063626 587063532 2.780000e-30 143.0
40 TraesCS7D01G193800 chr7A 80.769 182 32 2 3 181 637612297 637612478 3.590000e-29 139.0
41 TraesCS7D01G193800 chr7A 96.296 81 3 0 2233 2313 211365926 211365846 1.670000e-27 134.0
42 TraesCS7D01G193800 chr7A 87.719 114 13 1 1903 2016 123271126 123271238 6.010000e-27 132.0
43 TraesCS7D01G193800 chr3D 86.920 237 24 4 377 609 250022621 250022854 2.640000e-65 259.0
44 TraesCS7D01G193800 chr3D 85.955 178 11 6 4 177 389267286 389267119 7.610000e-41 178.0
45 TraesCS7D01G193800 chr3D 92.373 118 7 2 1796 1912 577394110 577393994 1.650000e-37 167.0
46 TraesCS7D01G193800 chr3D 90.909 110 7 3 1911 2019 540549108 540549001 7.720000e-31 145.0
47 TraesCS7D01G193800 chr2D 89.894 188 19 0 2488 2675 309156101 309155914 2.660000e-60 243.0
48 TraesCS7D01G193800 chr2D 90.756 119 7 3 1795 1912 376857614 376857729 3.570000e-34 156.0
49 TraesCS7D01G193800 chr3A 83.032 277 31 7 380 650 13962793 13962527 1.240000e-58 237.0
50 TraesCS7D01G193800 chr3A 88.360 189 21 1 2488 2675 468733899 468733711 2.680000e-55 226.0
51 TraesCS7D01G193800 chr3A 88.421 190 16 6 2488 2675 711212234 711212049 9.640000e-55 224.0
52 TraesCS7D01G193800 chr3A 93.636 110 4 3 1805 1912 609689148 609689256 7.660000e-36 161.0
53 TraesCS7D01G193800 chr6B 89.529 191 13 5 2488 2675 42109440 42109254 4.450000e-58 235.0
54 TraesCS7D01G193800 chr6B 93.578 109 5 2 1805 1912 138779173 138779066 7.660000e-36 161.0
55 TraesCS7D01G193800 chr6B 96.296 81 3 0 2233 2313 307026310 307026390 1.670000e-27 134.0
56 TraesCS7D01G193800 chr6B 96.296 81 3 0 2233 2313 394416538 394416458 1.670000e-27 134.0
57 TraesCS7D01G193800 chr1B 89.730 185 18 1 2488 2671 444028586 444028402 4.450000e-58 235.0
58 TraesCS7D01G193800 chr1B 93.750 48 3 0 603 650 118044897 118044944 3.690000e-09 73.1
59 TraesCS7D01G193800 chr1D 85.586 222 28 3 385 606 25734530 25734313 2.070000e-56 230.0
60 TraesCS7D01G193800 chr6A 81.944 288 23 9 391 650 78095452 78095166 1.610000e-52 217.0
61 TraesCS7D01G193800 chr6A 85.388 219 21 4 390 599 78147676 78147460 1.610000e-52 217.0
62 TraesCS7D01G193800 chr6A 92.661 109 6 2 1805 1912 185134695 185134802 3.570000e-34 156.0
63 TraesCS7D01G193800 chr6D 81.625 283 23 5 396 650 350062175 350062456 9.710000e-50 207.0
64 TraesCS7D01G193800 chr6D 83.684 190 24 6 4 187 95796214 95796026 3.540000e-39 172.0
65 TraesCS7D01G193800 chr6D 93.578 109 5 2 1805 1912 62116261 62116154 7.660000e-36 161.0
66 TraesCS7D01G193800 chr2B 82.479 234 32 8 378 606 30981436 30981207 2.100000e-46 196.0
67 TraesCS7D01G193800 chr2A 91.818 110 7 2 1804 1912 7724519 7724627 4.610000e-33 152.0
68 TraesCS7D01G193800 chr2A 90.265 113 10 1 1907 2019 89492885 89492996 2.150000e-31 147.0
69 TraesCS7D01G193800 chr4D 94.681 94 4 1 1906 1999 270678638 270678546 7.720000e-31 145.0
70 TraesCS7D01G193800 chr4D 94.000 50 3 0 603 652 132014372 132014323 2.860000e-10 76.8
71 TraesCS7D01G193800 chr4D 94.000 50 3 0 603 652 372887045 372886996 2.860000e-10 76.8
72 TraesCS7D01G193800 chr1A 96.296 81 3 0 2233 2313 94579394 94579474 1.670000e-27 134.0
73 TraesCS7D01G193800 chr1A 96.296 81 3 0 2233 2313 94665437 94665357 1.670000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G193800 chr7D 150832910 150835584 2674 False 4940.000000 4940 100.000000 1 2675 1 chr7D.!!$F2 2674
1 TraesCS7D01G193800 chr7B 112889969 112892214 2245 False 1118.333333 2704 95.413000 6 2475 3 chr7B.!!$F4 2469
2 TraesCS7D01G193800 chr4B 402842635 402843440 805 False 1363.000000 1363 97.274000 875 1677 1 chr4B.!!$F2 802
3 TraesCS7D01G193800 chr4B 402867480 402869072 1592 False 1248.000000 1592 94.470500 875 2675 2 chr4B.!!$F6 1800
4 TraesCS7D01G193800 chr4B 402858176 402858978 802 False 571.000000 920 92.909000 1660 2675 2 chr4B.!!$F5 1015
5 TraesCS7D01G193800 chr5B 631479603 631480815 1212 False 489.000000 767 86.988000 771 1763 2 chr5B.!!$F6 992
6 TraesCS7D01G193800 chr5D 502698708 502706048 7340 False 325.666667 647 87.947667 1109 1763 3 chr5D.!!$F3 654
7 TraesCS7D01G193800 chr5A 631359298 631360356 1058 False 399.500000 640 87.007000 809 1719 2 chr5A.!!$F3 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 667 0.389166 AGCGCTTGAGTCTGTACTGC 60.389 55.0 2.64 0.0 35.56 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 7924 0.716108 CGTAACCAGCTCTGCTTTCG 59.284 55.0 0.0 0.0 36.4 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.257371 CGTCGCGTTCCCTCTTGA 59.743 61.111 5.77 0.00 0.00 3.02
33 34 1.372499 CGTCGCGTTCCCTCTTGAA 60.372 57.895 5.77 0.00 0.00 2.69
40 41 0.875059 GTTCCCTCTTGAAGGCAACG 59.125 55.000 0.00 0.00 44.71 4.10
46 47 0.884704 TCTTGAAGGCAACGTCCTGC 60.885 55.000 3.56 3.56 45.31 4.85
58 59 1.607801 CGTCCTGCAGGTGGATCTGA 61.608 60.000 31.58 7.59 36.93 3.27
70 71 1.347062 GGATCTGATCAGAGGGACCC 58.653 60.000 28.26 19.06 41.33 4.46
132 133 2.953284 TGTATGGTTTTTGGGTCCGA 57.047 45.000 0.00 0.00 0.00 4.55
162 163 2.604912 AAAATGGACCAACCCTCTCC 57.395 50.000 0.00 0.00 38.00 3.71
229 231 3.745799 TCCTCAAATGCTTGAAACGGTA 58.254 40.909 0.00 0.00 41.05 4.02
270 272 0.463474 GATGGAGAGGAGCACCAAGC 60.463 60.000 2.07 0.00 40.75 4.01
287 289 4.280677 ACCAAGCAGATTTCGAAAAATGGA 59.719 37.500 15.66 0.00 35.21 3.41
290 292 5.002464 AGCAGATTTCGAAAAATGGATGG 57.998 39.130 15.66 0.64 35.21 3.51
296 298 0.746659 CGAAAAATGGATGGCTCCCC 59.253 55.000 1.34 0.00 41.29 4.81
360 367 1.077828 TCACTGTGACTCCCCTCATCT 59.922 52.381 6.36 0.00 0.00 2.90
370 377 1.557832 TCCCCTCATCTAAAACGGTGG 59.442 52.381 0.00 0.00 0.00 4.61
383 390 2.594592 GGTGGCAGGTTGCGAACT 60.595 61.111 0.00 0.00 46.21 3.01
461 468 2.032178 GTCCTGGTGCTCGCATTTATTC 59.968 50.000 0.00 0.00 0.00 1.75
527 534 2.162921 GACGTTCCTGTCGACGACGA 62.163 60.000 27.94 11.96 46.56 4.20
545 552 3.385079 CGAGGTGGCTTCGTAAATTTC 57.615 47.619 0.00 0.00 33.57 2.17
588 595 5.127845 AGTCTTTTCGGAGATGCTCATAAGA 59.872 40.000 0.00 0.00 35.04 2.10
589 596 5.812642 GTCTTTTCGGAGATGCTCATAAGAA 59.187 40.000 0.00 0.00 35.04 2.52
591 598 7.653713 GTCTTTTCGGAGATGCTCATAAGAATA 59.346 37.037 0.00 0.00 35.04 1.75
594 601 4.464244 TCGGAGATGCTCATAAGAATAGGG 59.536 45.833 0.00 0.00 31.08 3.53
598 605 5.862845 AGATGCTCATAAGAATAGGGTGTG 58.137 41.667 0.00 0.00 0.00 3.82
601 608 3.393800 CTCATAAGAATAGGGTGTGCGG 58.606 50.000 0.00 0.00 0.00 5.69
609 636 0.905809 TAGGGTGTGCGGGTGTATGT 60.906 55.000 0.00 0.00 0.00 2.29
633 660 3.549019 CGTGTATATGAGCGCTTGAGTCT 60.549 47.826 13.26 0.00 0.00 3.24
640 667 0.389166 AGCGCTTGAGTCTGTACTGC 60.389 55.000 2.64 0.00 35.56 4.40
716 744 1.268992 CGGGACCCTGGGATGTGTAA 61.269 60.000 22.23 0.00 0.00 2.41
740 768 0.989164 CGATTCAGCGCGACTAAACA 59.011 50.000 12.10 0.00 0.00 2.83
742 770 1.993370 GATTCAGCGCGACTAAACAGT 59.007 47.619 12.10 0.00 0.00 3.55
743 771 1.136690 TTCAGCGCGACTAAACAGTG 58.863 50.000 12.10 0.00 0.00 3.66
744 772 1.130613 CAGCGCGACTAAACAGTGC 59.869 57.895 12.10 0.00 41.22 4.40
745 773 1.300620 AGCGCGACTAAACAGTGCA 60.301 52.632 12.10 0.00 43.11 4.57
747 775 1.781555 CGCGACTAAACAGTGCAGG 59.218 57.895 0.00 0.00 0.00 4.85
748 776 0.944311 CGCGACTAAACAGTGCAGGT 60.944 55.000 0.00 0.00 0.00 4.00
899 936 2.558795 CAACTCCGATCGGGATCATAGT 59.441 50.000 32.79 23.71 46.04 2.12
1703 7350 2.540361 GGCGATGATGTGATGCTTGTTC 60.540 50.000 0.00 0.00 0.00 3.18
1766 7413 6.094603 GGCATGGACATACTGGATTTATCATC 59.905 42.308 0.00 0.00 0.00 2.92
1795 7442 3.266477 TGAAGATGAGGGCTAGGCTAT 57.734 47.619 16.80 8.44 0.00 2.97
1806 7453 5.810095 AGGGCTAGGCTATCAAATTCATAC 58.190 41.667 16.80 0.00 0.00 2.39
1807 7454 5.549619 AGGGCTAGGCTATCAAATTCATACT 59.450 40.000 16.80 0.00 0.00 2.12
1808 7455 5.877564 GGGCTAGGCTATCAAATTCATACTC 59.122 44.000 16.80 0.00 0.00 2.59
1809 7456 5.877564 GGCTAGGCTATCAAATTCATACTCC 59.122 44.000 9.46 0.00 0.00 3.85
1810 7457 5.877564 GCTAGGCTATCAAATTCATACTCCC 59.122 44.000 0.00 0.00 0.00 4.30
1811 7458 6.296145 GCTAGGCTATCAAATTCATACTCCCT 60.296 42.308 0.00 0.00 0.00 4.20
1812 7459 6.120507 AGGCTATCAAATTCATACTCCCTC 57.879 41.667 0.00 0.00 0.00 4.30
1813 7460 5.013599 AGGCTATCAAATTCATACTCCCTCC 59.986 44.000 0.00 0.00 0.00 4.30
1814 7461 4.932200 GCTATCAAATTCATACTCCCTCCG 59.068 45.833 0.00 0.00 0.00 4.63
1815 7462 5.511545 GCTATCAAATTCATACTCCCTCCGT 60.512 44.000 0.00 0.00 0.00 4.69
1816 7463 4.837093 TCAAATTCATACTCCCTCCGTT 57.163 40.909 0.00 0.00 0.00 4.44
1817 7464 4.766375 TCAAATTCATACTCCCTCCGTTC 58.234 43.478 0.00 0.00 0.00 3.95
1818 7465 3.840124 AATTCATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
1819 7466 2.241281 TTCATACTCCCTCCGTTCCA 57.759 50.000 0.00 0.00 0.00 3.53
1820 7467 2.241281 TCATACTCCCTCCGTTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
1821 7468 2.542550 TCATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
1822 7469 3.112263 TCATACTCCCTCCGTTCCAAAT 58.888 45.455 0.00 0.00 0.00 2.32
1823 7470 3.521937 TCATACTCCCTCCGTTCCAAATT 59.478 43.478 0.00 0.00 0.00 1.82
1824 7471 4.717778 TCATACTCCCTCCGTTCCAAATTA 59.282 41.667 0.00 0.00 0.00 1.40
1825 7472 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1826 7473 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1827 7474 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
1828 7475 4.533311 ACTCCCTCCGTTCCAAATTACTTA 59.467 41.667 0.00 0.00 0.00 2.24
1829 7476 5.191124 ACTCCCTCCGTTCCAAATTACTTAT 59.809 40.000 0.00 0.00 0.00 1.73
1830 7477 5.677567 TCCCTCCGTTCCAAATTACTTATC 58.322 41.667 0.00 0.00 0.00 1.75
1831 7478 4.820173 CCCTCCGTTCCAAATTACTTATCC 59.180 45.833 0.00 0.00 0.00 2.59
1832 7479 5.433526 CCTCCGTTCCAAATTACTTATCCA 58.566 41.667 0.00 0.00 0.00 3.41
1833 7480 6.062095 CCTCCGTTCCAAATTACTTATCCAT 58.938 40.000 0.00 0.00 0.00 3.41
1834 7481 7.221450 CCTCCGTTCCAAATTACTTATCCATA 58.779 38.462 0.00 0.00 0.00 2.74
1835 7482 7.883311 CCTCCGTTCCAAATTACTTATCCATAT 59.117 37.037 0.00 0.00 0.00 1.78
1836 7483 9.284968 CTCCGTTCCAAATTACTTATCCATATT 57.715 33.333 0.00 0.00 0.00 1.28
1837 7484 9.635404 TCCGTTCCAAATTACTTATCCATATTT 57.365 29.630 0.00 0.00 0.00 1.40
1862 7509 9.774413 TTATCTAGACACGAATGTATCTAGACA 57.226 33.333 13.81 2.20 41.50 3.41
1863 7510 7.479897 TCTAGACACGAATGTATCTAGACAC 57.520 40.000 8.86 0.00 37.36 3.67
1864 7511 7.273712 TCTAGACACGAATGTATCTAGACACT 58.726 38.462 8.86 0.00 37.36 3.55
1865 7512 8.419442 TCTAGACACGAATGTATCTAGACACTA 58.581 37.037 8.86 0.00 37.36 2.74
1866 7513 7.860918 AGACACGAATGTATCTAGACACTAA 57.139 36.000 2.29 0.00 39.95 2.24
1867 7514 8.277490 AGACACGAATGTATCTAGACACTAAA 57.723 34.615 2.29 0.00 39.95 1.85
1868 7515 8.182881 AGACACGAATGTATCTAGACACTAAAC 58.817 37.037 2.29 0.00 39.95 2.01
1869 7516 7.823665 ACACGAATGTATCTAGACACTAAACA 58.176 34.615 2.29 0.00 37.26 2.83
1870 7517 8.301720 ACACGAATGTATCTAGACACTAAACAA 58.698 33.333 2.29 0.00 37.26 2.83
1871 7518 8.799091 CACGAATGTATCTAGACACTAAACAAG 58.201 37.037 2.29 0.00 30.52 3.16
1872 7519 8.521176 ACGAATGTATCTAGACACTAAACAAGT 58.479 33.333 2.29 0.00 39.81 3.16
1873 7520 9.355215 CGAATGTATCTAGACACTAAACAAGTT 57.645 33.333 2.29 0.00 35.76 2.66
1914 7561 9.646427 ATCTAGACAAATTCAAGTCAACTACTC 57.354 33.333 0.00 0.00 37.50 2.59
1915 7562 8.088981 TCTAGACAAATTCAAGTCAACTACTCC 58.911 37.037 7.95 0.00 37.50 3.85
1916 7563 5.998363 AGACAAATTCAAGTCAACTACTCCC 59.002 40.000 7.95 0.00 37.50 4.30
1917 7564 5.941788 ACAAATTCAAGTCAACTACTCCCT 58.058 37.500 0.00 0.00 37.50 4.20
1918 7565 5.998363 ACAAATTCAAGTCAACTACTCCCTC 59.002 40.000 0.00 0.00 37.50 4.30
1919 7566 6.183361 ACAAATTCAAGTCAACTACTCCCTCT 60.183 38.462 0.00 0.00 37.50 3.69
1920 7567 4.873746 TTCAAGTCAACTACTCCCTCTG 57.126 45.455 0.00 0.00 37.50 3.35
1921 7568 3.845860 TCAAGTCAACTACTCCCTCTGT 58.154 45.455 0.00 0.00 37.50 3.41
1922 7569 4.994282 TCAAGTCAACTACTCCCTCTGTA 58.006 43.478 0.00 0.00 37.50 2.74
1923 7570 5.391256 TCAAGTCAACTACTCCCTCTGTAA 58.609 41.667 0.00 0.00 37.50 2.41
1924 7571 5.836898 TCAAGTCAACTACTCCCTCTGTAAA 59.163 40.000 0.00 0.00 37.50 2.01
1925 7572 5.725325 AGTCAACTACTCCCTCTGTAAAC 57.275 43.478 0.00 0.00 30.33 2.01
1926 7573 5.395611 AGTCAACTACTCCCTCTGTAAACT 58.604 41.667 0.00 0.00 30.33 2.66
1927 7574 6.550163 AGTCAACTACTCCCTCTGTAAACTA 58.450 40.000 0.00 0.00 30.33 2.24
1928 7575 7.008941 AGTCAACTACTCCCTCTGTAAACTAA 58.991 38.462 0.00 0.00 30.33 2.24
1929 7576 7.674772 AGTCAACTACTCCCTCTGTAAACTAAT 59.325 37.037 0.00 0.00 30.33 1.73
1930 7577 8.964772 GTCAACTACTCCCTCTGTAAACTAATA 58.035 37.037 0.00 0.00 0.00 0.98
1931 7578 9.710818 TCAACTACTCCCTCTGTAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
1937 7584 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1938 7585 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1939 7586 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1940 7587 7.808856 CCCTCTGTAAACTAATATAAGAGCGTC 59.191 40.741 0.00 0.00 0.00 5.19
1941 7588 8.569641 CCTCTGTAAACTAATATAAGAGCGTCT 58.430 37.037 0.00 0.00 0.00 4.18
1949 7596 9.509956 AACTAATATAAGAGCGTCTAGATCACT 57.490 33.333 0.00 0.00 37.82 3.41
1957 7604 7.811117 AGAGCGTCTAGATCACTATTTTAGT 57.189 36.000 0.00 0.00 37.82 2.24
1990 7637 9.530633 AACGCTCTTATATTTAGTTTACAGAGG 57.469 33.333 0.00 0.00 0.00 3.69
1991 7638 8.142551 ACGCTCTTATATTTAGTTTACAGAGGG 58.857 37.037 8.01 8.01 42.67 4.30
1992 7639 8.358148 CGCTCTTATATTTAGTTTACAGAGGGA 58.642 37.037 0.00 0.00 40.65 4.20
1993 7640 9.699703 GCTCTTATATTTAGTTTACAGAGGGAG 57.300 37.037 0.00 0.00 0.00 4.30
2001 7648 8.857694 TTTAGTTTACAGAGGGAGTAATTTGG 57.142 34.615 0.00 0.00 32.07 3.28
2002 7649 6.697641 AGTTTACAGAGGGAGTAATTTGGA 57.302 37.500 0.00 0.00 32.07 3.53
2003 7650 7.086685 AGTTTACAGAGGGAGTAATTTGGAA 57.913 36.000 0.00 0.00 32.07 3.53
2004 7651 6.940867 AGTTTACAGAGGGAGTAATTTGGAAC 59.059 38.462 0.00 0.00 32.07 3.62
2005 7652 3.939066 ACAGAGGGAGTAATTTGGAACG 58.061 45.455 0.00 0.00 0.00 3.95
2006 7653 3.270877 CAGAGGGAGTAATTTGGAACGG 58.729 50.000 0.00 0.00 0.00 4.44
2007 7654 3.055385 CAGAGGGAGTAATTTGGAACGGA 60.055 47.826 0.00 0.00 0.00 4.69
2008 7655 3.197983 AGAGGGAGTAATTTGGAACGGAG 59.802 47.826 0.00 0.00 0.00 4.63
2009 7656 2.238898 AGGGAGTAATTTGGAACGGAGG 59.761 50.000 0.00 0.00 0.00 4.30
2010 7657 2.640184 GGAGTAATTTGGAACGGAGGG 58.360 52.381 0.00 0.00 0.00 4.30
2011 7658 2.237893 GGAGTAATTTGGAACGGAGGGA 59.762 50.000 0.00 0.00 0.00 4.20
2012 7659 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2013 7660 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2014 7661 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2064 7711 6.257849 GCGTGAGTTAATTCCATCAGTAATCA 59.742 38.462 0.00 0.00 0.00 2.57
2203 7856 8.779354 AAGTTTACTGTAGAGATTCATCAACC 57.221 34.615 0.00 0.00 0.00 3.77
2204 7857 7.907389 AGTTTACTGTAGAGATTCATCAACCA 58.093 34.615 0.00 0.00 0.00 3.67
2205 7858 8.037758 AGTTTACTGTAGAGATTCATCAACCAG 58.962 37.037 0.00 0.00 0.00 4.00
2238 7892 4.225942 TCTTAGATCACAGGATGGCAACTT 59.774 41.667 0.00 0.00 43.62 2.66
2263 7917 0.391793 GTTCGGGGCTTCTCCTCTTG 60.392 60.000 0.00 0.00 31.12 3.02
2344 8000 2.356125 GGACAAATCAGGCCTTCTAGCA 60.356 50.000 0.00 0.00 0.00 3.49
2373 8029 6.239945 CGTTTTTGTTTTGATTTGTCCACAG 58.760 36.000 0.00 0.00 0.00 3.66
2385 8041 6.947733 TGATTTGTCCACAGATTCCATTAAGT 59.052 34.615 0.00 0.00 0.00 2.24
2404 8060 1.135024 GTTGCCCGCAATGATGTTGAT 60.135 47.619 5.25 0.00 38.28 2.57
2475 8131 5.479124 AGTCCCGTGTGTTTATTTAGTCT 57.521 39.130 0.00 0.00 0.00 3.24
2495 8151 9.618890 TTAGTCTCTTCTTGGGATATGAATTTG 57.381 33.333 0.00 0.00 0.00 2.32
2501 8157 8.960591 TCTTCTTGGGATATGAATTTGAACTTC 58.039 33.333 0.00 0.00 0.00 3.01
2539 8195 8.410673 TTGTTTGGGTGATTTAAACTATGCTA 57.589 30.769 0.00 0.00 35.80 3.49
2565 8221 8.545229 TGTCTTGTTTTGATGTTTGAAATGTT 57.455 26.923 0.00 0.00 0.00 2.71
2641 8297 1.660333 GCAGTTTAGCGTGTCTGTTGC 60.660 52.381 0.00 0.00 0.00 4.17
2645 8301 1.556591 TTAGCGTGTCTGTTGCAGCG 61.557 55.000 0.00 0.00 0.00 5.18
2649 8305 2.666190 TGTCTGTTGCAGCGGCTC 60.666 61.111 10.92 4.08 41.91 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.479269 CAAGAGGGAACGCGACGC 61.479 66.667 15.93 10.49 34.13 5.19
16 17 1.014564 CCTTCAAGAGGGAACGCGAC 61.015 60.000 15.93 6.28 42.26 5.19
32 33 2.281761 CCTGCAGGACGTTGCCTT 60.282 61.111 29.88 0.00 43.43 4.35
33 34 3.560251 ACCTGCAGGACGTTGCCT 61.560 61.111 39.19 11.44 43.43 4.75
40 41 0.835941 ATCAGATCCACCTGCAGGAC 59.164 55.000 39.19 21.55 38.13 3.85
46 47 1.693062 CCCTCTGATCAGATCCACCTG 59.307 57.143 25.30 11.81 36.76 4.00
58 59 0.684805 GAGTCACGGGTCCCTCTGAT 60.685 60.000 6.29 0.00 0.00 2.90
106 107 2.224066 CCCAAAAACCATACAAACGGCA 60.224 45.455 0.00 0.00 0.00 5.69
132 133 6.070251 GGGTTGGTCCATTTTATGAGGAAAAT 60.070 38.462 0.00 0.00 39.13 1.82
162 163 7.765307 ACACTATTGCTAAATCCATTGAACAG 58.235 34.615 0.00 0.00 0.00 3.16
204 206 2.220653 TTCAAGCATTTGAGGAGGGG 57.779 50.000 0.00 0.00 43.76 4.79
208 210 2.582052 ACCGTTTCAAGCATTTGAGGA 58.418 42.857 1.03 0.00 43.76 3.71
270 272 5.002464 AGCCATCCATTTTTCGAAATCTG 57.998 39.130 12.12 11.65 0.00 2.90
296 298 1.974343 TCGCGGTTGGAAAATGGGG 60.974 57.895 6.13 0.00 0.00 4.96
339 346 2.114616 GATGAGGGGAGTCACAGTGAT 58.885 52.381 6.51 0.00 0.00 3.06
360 367 1.787057 CGCAACCTGCCACCGTTTTA 61.787 55.000 0.00 0.00 41.12 1.52
370 377 1.602377 ACAAGTTAGTTCGCAACCTGC 59.398 47.619 0.00 0.00 40.69 4.85
383 390 5.308497 TCTCTAACCATCCAACCACAAGTTA 59.692 40.000 0.00 0.00 36.18 2.24
516 523 4.034258 GCCACCTCGTCGTCGACA 62.034 66.667 24.13 10.99 41.35 4.35
527 534 4.394729 TCTTGAAATTTACGAAGCCACCT 58.605 39.130 0.00 0.00 0.00 4.00
545 552 5.777802 AGACTGAGCCGACATATTATCTTG 58.222 41.667 0.00 0.00 0.00 3.02
588 595 1.134220 CATACACCCGCACACCCTATT 60.134 52.381 0.00 0.00 0.00 1.73
589 596 0.468226 CATACACCCGCACACCCTAT 59.532 55.000 0.00 0.00 0.00 2.57
591 598 2.221299 ACATACACCCGCACACCCT 61.221 57.895 0.00 0.00 0.00 4.34
594 601 2.867472 GCACATACACCCGCACAC 59.133 61.111 0.00 0.00 0.00 3.82
598 605 0.808453 ATACACGCACATACACCCGC 60.808 55.000 0.00 0.00 0.00 6.13
601 608 3.428870 GCTCATATACACGCACATACACC 59.571 47.826 0.00 0.00 0.00 4.16
660 688 1.192146 TGACTGTAGGAGGGCCACAC 61.192 60.000 6.18 0.00 36.29 3.82
700 728 0.107848 CCGTTACACATCCCAGGGTC 60.108 60.000 5.01 0.00 0.00 4.46
706 734 0.463116 AATCGCCCGTTACACATCCC 60.463 55.000 0.00 0.00 0.00 3.85
731 759 0.512952 GCACCTGCACTGTTTAGTCG 59.487 55.000 0.00 0.00 41.59 4.18
743 771 5.371115 TCTTTTTATTACAGTGCACCTGC 57.629 39.130 14.63 0.00 45.68 4.85
745 773 7.951591 ACAATTCTTTTTATTACAGTGCACCT 58.048 30.769 14.63 0.88 0.00 4.00
747 775 9.243637 TGAACAATTCTTTTTATTACAGTGCAC 57.756 29.630 9.40 9.40 0.00 4.57
748 776 9.979578 ATGAACAATTCTTTTTATTACAGTGCA 57.020 25.926 0.00 0.00 0.00 4.57
788 816 2.743636 TCTCGATTGGCGACTTTCTT 57.256 45.000 0.00 0.00 45.59 2.52
1703 7350 7.707104 ACTTCAGTTTAGATGAACAAAACAGG 58.293 34.615 0.00 0.00 35.93 4.00
1766 7413 5.495926 AGCCCTCATCTTCATGGTATAAG 57.504 43.478 0.00 0.00 0.00 1.73
1795 7442 4.383770 GGAACGGAGGGAGTATGAATTTGA 60.384 45.833 0.00 0.00 0.00 2.69
1806 7453 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
1807 7454 5.397109 GGATAAGTAATTTGGAACGGAGGGA 60.397 44.000 0.00 0.00 0.00 4.20
1808 7455 4.820173 GGATAAGTAATTTGGAACGGAGGG 59.180 45.833 0.00 0.00 0.00 4.30
1809 7456 5.433526 TGGATAAGTAATTTGGAACGGAGG 58.566 41.667 0.00 0.00 0.00 4.30
1810 7457 8.848474 ATATGGATAAGTAATTTGGAACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
1811 7458 9.635404 AAATATGGATAAGTAATTTGGAACGGA 57.365 29.630 0.00 0.00 0.00 4.69
1841 7488 8.953368 TTAGTGTCTAGATACATTCGTGTCTA 57.047 34.615 20.24 0.00 41.37 2.59
1842 7489 7.860918 TTAGTGTCTAGATACATTCGTGTCT 57.139 36.000 20.24 0.71 44.80 3.41
1843 7490 7.966753 TGTTTAGTGTCTAGATACATTCGTGTC 59.033 37.037 20.24 4.69 33.67 3.67
1844 7491 7.823665 TGTTTAGTGTCTAGATACATTCGTGT 58.176 34.615 20.24 2.04 0.00 4.49
1845 7492 8.683550 TTGTTTAGTGTCTAGATACATTCGTG 57.316 34.615 20.24 0.00 0.00 4.35
1846 7493 8.521176 ACTTGTTTAGTGTCTAGATACATTCGT 58.479 33.333 20.24 3.37 35.19 3.85
1847 7494 8.912787 ACTTGTTTAGTGTCTAGATACATTCG 57.087 34.615 20.24 5.79 35.19 3.34
1888 7535 9.646427 GAGTAGTTGACTTGAATTTGTCTAGAT 57.354 33.333 0.00 0.00 39.06 1.98
1889 7536 8.088981 GGAGTAGTTGACTTGAATTTGTCTAGA 58.911 37.037 0.00 0.00 39.06 2.43
1890 7537 7.332182 GGGAGTAGTTGACTTGAATTTGTCTAG 59.668 40.741 8.09 0.00 39.06 2.43
1891 7538 7.016268 AGGGAGTAGTTGACTTGAATTTGTCTA 59.984 37.037 8.09 0.29 39.06 2.59
1892 7539 5.998363 GGGAGTAGTTGACTTGAATTTGTCT 59.002 40.000 8.09 0.00 39.06 3.41
1893 7540 5.998363 AGGGAGTAGTTGACTTGAATTTGTC 59.002 40.000 0.00 0.00 39.06 3.18
1894 7541 5.941788 AGGGAGTAGTTGACTTGAATTTGT 58.058 37.500 0.00 0.00 39.06 2.83
1895 7542 6.148480 CAGAGGGAGTAGTTGACTTGAATTTG 59.852 42.308 0.00 0.00 39.06 2.32
1896 7543 6.183361 ACAGAGGGAGTAGTTGACTTGAATTT 60.183 38.462 0.00 0.00 39.06 1.82
1897 7544 5.308237 ACAGAGGGAGTAGTTGACTTGAATT 59.692 40.000 0.00 0.00 39.06 2.17
1898 7545 4.841246 ACAGAGGGAGTAGTTGACTTGAAT 59.159 41.667 0.00 0.00 39.06 2.57
1899 7546 4.223953 ACAGAGGGAGTAGTTGACTTGAA 58.776 43.478 0.00 0.00 39.06 2.69
1900 7547 3.845860 ACAGAGGGAGTAGTTGACTTGA 58.154 45.455 0.00 0.00 39.06 3.02
1901 7548 5.723672 TTACAGAGGGAGTAGTTGACTTG 57.276 43.478 0.00 0.00 39.06 3.16
1902 7549 5.839606 AGTTTACAGAGGGAGTAGTTGACTT 59.160 40.000 0.00 0.00 39.06 3.01
1903 7550 5.395611 AGTTTACAGAGGGAGTAGTTGACT 58.604 41.667 0.00 0.00 42.90 3.41
1904 7551 5.725325 AGTTTACAGAGGGAGTAGTTGAC 57.275 43.478 0.00 0.00 0.00 3.18
1905 7552 9.710818 ATATTAGTTTACAGAGGGAGTAGTTGA 57.289 33.333 0.00 0.00 0.00 3.18
1911 7558 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
1912 7559 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1913 7560 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1914 7561 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1915 7562 8.569641 AGACGCTCTTATATTAGTTTACAGAGG 58.430 37.037 0.00 0.00 0.00 3.69
1923 7570 9.509956 AGTGATCTAGACGCTCTTATATTAGTT 57.490 33.333 0.00 0.00 0.00 2.24
1931 7578 9.339850 ACTAAAATAGTGATCTAGACGCTCTTA 57.660 33.333 10.41 7.60 37.69 2.10
1932 7579 8.228035 ACTAAAATAGTGATCTAGACGCTCTT 57.772 34.615 10.41 6.31 37.69 2.85
1933 7580 7.811117 ACTAAAATAGTGATCTAGACGCTCT 57.189 36.000 10.41 7.61 37.69 4.09
1964 7611 9.530633 CCTCTGTAAACTAAATATAAGAGCGTT 57.469 33.333 0.00 0.00 0.00 4.84
1965 7612 8.142551 CCCTCTGTAAACTAAATATAAGAGCGT 58.857 37.037 0.00 0.00 0.00 5.07
1966 7613 8.358148 TCCCTCTGTAAACTAAATATAAGAGCG 58.642 37.037 0.00 0.00 0.00 5.03
1967 7614 9.699703 CTCCCTCTGTAAACTAAATATAAGAGC 57.300 37.037 0.00 0.00 0.00 4.09
1975 7622 9.462606 CCAAATTACTCCCTCTGTAAACTAAAT 57.537 33.333 0.00 0.00 34.20 1.40
1976 7623 8.662255 TCCAAATTACTCCCTCTGTAAACTAAA 58.338 33.333 0.00 0.00 34.20 1.85
1977 7624 8.209802 TCCAAATTACTCCCTCTGTAAACTAA 57.790 34.615 0.00 0.00 34.20 2.24
1978 7625 7.801893 TCCAAATTACTCCCTCTGTAAACTA 57.198 36.000 0.00 0.00 34.20 2.24
1979 7626 6.697641 TCCAAATTACTCCCTCTGTAAACT 57.302 37.500 0.00 0.00 34.20 2.66
1980 7627 6.128363 CGTTCCAAATTACTCCCTCTGTAAAC 60.128 42.308 0.00 0.00 34.20 2.01
1981 7628 5.935789 CGTTCCAAATTACTCCCTCTGTAAA 59.064 40.000 0.00 0.00 34.20 2.01
1982 7629 5.484715 CGTTCCAAATTACTCCCTCTGTAA 58.515 41.667 0.00 0.00 34.87 2.41
1983 7630 4.081309 CCGTTCCAAATTACTCCCTCTGTA 60.081 45.833 0.00 0.00 0.00 2.74
1984 7631 3.307480 CCGTTCCAAATTACTCCCTCTGT 60.307 47.826 0.00 0.00 0.00 3.41
1985 7632 3.055385 TCCGTTCCAAATTACTCCCTCTG 60.055 47.826 0.00 0.00 0.00 3.35
1986 7633 3.178865 TCCGTTCCAAATTACTCCCTCT 58.821 45.455 0.00 0.00 0.00 3.69
1987 7634 3.532542 CTCCGTTCCAAATTACTCCCTC 58.467 50.000 0.00 0.00 0.00 4.30
1988 7635 2.238898 CCTCCGTTCCAAATTACTCCCT 59.761 50.000 0.00 0.00 0.00 4.20
1989 7636 2.640184 CCTCCGTTCCAAATTACTCCC 58.360 52.381 0.00 0.00 0.00 4.30
1990 7637 2.237893 TCCCTCCGTTCCAAATTACTCC 59.762 50.000 0.00 0.00 0.00 3.85
1991 7638 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1992 7639 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1993 7640 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1994 7641 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
1995 7642 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
1996 7643 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
1997 7644 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1998 7645 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
1999 7646 2.019807 AAACTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
2000 7647 2.301009 TCAAAACTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
2001 7648 3.672767 TCAAAACTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
2002 7649 4.132336 GTTTCAAAACTACTCCCTCCGTT 58.868 43.478 0.00 0.00 36.03 4.44
2003 7650 3.135167 TGTTTCAAAACTACTCCCTCCGT 59.865 43.478 7.12 0.00 39.59 4.69
2004 7651 3.735591 TGTTTCAAAACTACTCCCTCCG 58.264 45.455 7.12 0.00 39.59 4.63
2005 7652 4.072839 CCTGTTTCAAAACTACTCCCTCC 58.927 47.826 7.12 0.00 39.59 4.30
2006 7653 4.715713 ACCTGTTTCAAAACTACTCCCTC 58.284 43.478 7.12 0.00 39.59 4.30
2007 7654 4.790718 ACCTGTTTCAAAACTACTCCCT 57.209 40.909 7.12 0.00 39.59 4.20
2008 7655 5.847111 AAACCTGTTTCAAAACTACTCCC 57.153 39.130 7.12 0.00 39.59 4.30
2009 7656 5.518847 GCAAAACCTGTTTCAAAACTACTCC 59.481 40.000 7.12 0.00 39.59 3.85
2010 7657 6.253512 CAGCAAAACCTGTTTCAAAACTACTC 59.746 38.462 7.12 0.00 39.59 2.59
2011 7658 6.099341 CAGCAAAACCTGTTTCAAAACTACT 58.901 36.000 7.12 0.00 39.59 2.57
2012 7659 5.867174 ACAGCAAAACCTGTTTCAAAACTAC 59.133 36.000 7.12 0.00 43.19 2.73
2013 7660 6.031751 ACAGCAAAACCTGTTTCAAAACTA 57.968 33.333 7.12 0.00 43.19 2.24
2014 7661 4.893608 ACAGCAAAACCTGTTTCAAAACT 58.106 34.783 7.12 0.00 43.19 2.66
2189 7842 5.243981 CAAGACACTGGTTGATGAATCTCT 58.756 41.667 0.00 0.00 0.00 3.10
2194 7847 2.158623 AGGCAAGACACTGGTTGATGAA 60.159 45.455 0.00 0.00 0.00 2.57
2195 7848 1.421268 AGGCAAGACACTGGTTGATGA 59.579 47.619 0.00 0.00 0.00 2.92
2196 7849 1.808945 GAGGCAAGACACTGGTTGATG 59.191 52.381 0.00 0.00 0.00 3.07
2197 7850 1.701847 AGAGGCAAGACACTGGTTGAT 59.298 47.619 0.00 0.00 0.00 2.57
2198 7851 1.131638 AGAGGCAAGACACTGGTTGA 58.868 50.000 0.00 0.00 0.00 3.18
2199 7852 1.972872 AAGAGGCAAGACACTGGTTG 58.027 50.000 0.00 0.00 0.00 3.77
2200 7853 2.972713 TCTAAGAGGCAAGACACTGGTT 59.027 45.455 0.00 0.00 0.00 3.67
2201 7854 2.609747 TCTAAGAGGCAAGACACTGGT 58.390 47.619 0.00 0.00 0.00 4.00
2202 7855 3.196469 TGATCTAAGAGGCAAGACACTGG 59.804 47.826 0.00 0.00 0.00 4.00
2203 7856 4.180057 GTGATCTAAGAGGCAAGACACTG 58.820 47.826 0.00 0.00 0.00 3.66
2204 7857 3.834813 TGTGATCTAAGAGGCAAGACACT 59.165 43.478 0.00 0.00 31.16 3.55
2205 7858 4.180057 CTGTGATCTAAGAGGCAAGACAC 58.820 47.826 0.00 0.00 0.00 3.67
2238 7892 2.358247 GAAGCCCCGAACGCTTGA 60.358 61.111 8.09 0.00 46.37 3.02
2270 7924 0.716108 CGTAACCAGCTCTGCTTTCG 59.284 55.000 0.00 0.00 36.40 3.46
2344 8000 4.693095 ACAAATCAAAACAAAAACGGCTGT 59.307 33.333 0.00 0.00 0.00 4.40
2373 8029 1.748493 TGCGGGCAACTTAATGGAATC 59.252 47.619 0.00 0.00 0.00 2.52
2385 8041 1.134753 GATCAACATCATTGCGGGCAA 59.865 47.619 8.72 8.72 40.47 4.52
2404 8060 3.023119 ACCAAACAACAAGCACATCTGA 58.977 40.909 0.00 0.00 0.00 3.27
2475 8131 8.884124 AAGTTCAAATTCATATCCCAAGAAGA 57.116 30.769 0.00 0.00 0.00 2.87
2495 8151 7.805071 CCAAACAAGTTCATGACATAGAAGTTC 59.195 37.037 13.35 0.00 35.75 3.01
2501 8157 5.473162 TCACCCAAACAAGTTCATGACATAG 59.527 40.000 0.00 0.00 0.00 2.23
2539 8195 8.721019 ACATTTCAAACATCAAAACAAGACAT 57.279 26.923 0.00 0.00 0.00 3.06
2576 8232 6.105333 GCTTGCCATATGTTACATTTTGGAA 58.895 36.000 22.78 14.36 0.00 3.53
2628 8284 3.341043 CGCTGCAACAGACACGCT 61.341 61.111 0.00 0.00 32.44 5.07
2630 8286 4.374702 GCCGCTGCAACAGACACG 62.375 66.667 0.00 0.00 37.47 4.49
2645 8301 3.568538 CAAAATATAATGCGCCTGAGCC 58.431 45.455 4.18 0.00 36.02 4.70
2649 8305 2.727798 GCTGCAAAATATAATGCGCCTG 59.272 45.455 4.18 0.00 45.47 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.