AutoCloner

Multiple sequence alignment - TraesCS7D01G193500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G193500	chr7D	100.000	2718	0	0	1	2718	150589432	150592149	0.000000e+00	5020
1	TraesCS7D01G193500	chr7D	92.586	1659	112	7	692	2344	420438935	420437282	0.000000e+00	2372
2	TraesCS7D01G193500	chr7D	91.877	1662	123	8	692	2344	557862545	557860887	0.000000e+00	2311
3	TraesCS7D01G193500	chr4D	92.530	2356	155	13	1	2350	170243678	170241338	0.000000e+00	3356
4	TraesCS7D01G193500	chr4D	91.199	909	68	6	1	906	276862093	276862992	0.000000e+00	1225
5	TraesCS7D01G193500	chr4D	92.916	367	23	3	2351	2714	170240701	170240335	5.150000e-147	531
6	TraesCS7D01G193500	chr4D	89.674	368	30	5	2352	2711	64219303	64218936	1.910000e-126	462
7	TraesCS7D01G193500	chr4D	89.560	364	32	3	2352	2711	179917851	179917490	8.870000e-125	457
8	TraesCS7D01G193500	chr4D	89.402	368	31	5	2352	2711	444103806	444104173	8.870000e-125	457
9	TraesCS7D01G193500	chr5D	93.079	1806	89	12	1	1780	196186375	196184580	0.000000e+00	2610
10	TraesCS7D01G193500	chr5D	94.058	1666	85	11	692	2347	45268630	45270291	0.000000e+00	2516
11	TraesCS7D01G193500	chr5D	93.611	1659	95	8	695	2347	551044646	551042993	0.000000e+00	2466
12	TraesCS7D01G193500	chr5D	92.512	828	52	5	3	825	45267898	45268720	0.000000e+00	1177
13	TraesCS7D01G193500	chr5D	96.448	366	13	0	2351	2716	45270931	45271296	2.990000e-169	604
14	TraesCS7D01G193500	chr5D	95.902	366	15	0	2351	2716	196181715	196181350	6.480000e-166	593
15	TraesCS7D01G193500	chr5D	92.623	366	25	2	2351	2714	551033627	551033262	2.400000e-145	525
16	TraesCS7D01G193500	chr1D	93.439	1646	96	8	704	2344	344094105	344092467	0.000000e+00	2431
17	TraesCS7D01G193500	chr1D	92.418	910	54	9	3	909	110918282	110917385	0.000000e+00	1284
18	TraesCS7D01G193500	chr1D	91.667	828	59	4	1	825	344094847	344094027	0.000000e+00	1138
19	TraesCS7D01G193500	chr1D	94.795	365	18	1	2351	2714	110915289	110914925	3.930000e-158	568
20	TraesCS7D01G193500	chr1D	92.703	370	22	3	2352	2716	297363530	297363899	1.850000e-146	529
21	TraesCS7D01G193500	chr1D	91.176	374	24	5	2352	2716	234889549	234889922	1.450000e-137	499
22	TraesCS7D01G193500	chr1D	91.057	369	29	2	2352	2716	49636017	49636385	1.880000e-136	496
23	TraesCS7D01G193500	chrUn	92.437	1666	114	10	686	2344	104752383	104754043	0.000000e+00	2368
24	TraesCS7D01G193500	chrUn	94.505	364	19	1	2351	2714	104754689	104755051	6.570000e-156	560
25	TraesCS7D01G193500	chrUn	93.664	363	21	2	2351	2711	97058690	97059052	2.380000e-150	542
26	TraesCS7D01G193500	chrUn	89.328	253	27	0	2351	2603	9391411	9391159	4.370000e-83	318
27	TraesCS7D01G193500	chrUn	89.754	244	25	0	2351	2594	9438027	9438270	2.030000e-81	313
28	TraesCS7D01G193500	chrUn	89.474	247	24	2	2351	2596	76670041	76670286	7.310000e-81	311
29	TraesCS7D01G193500	chrUn	89.474	247	25	1	2351	2596	264302389	264302635	7.310000e-81	311
30	TraesCS7D01G193500	chrUn	89.431	246	25	1	2352	2596	311225712	311225957	2.630000e-80	309
31	TraesCS7D01G193500	chrUn	89.431	246	25	1	2352	2596	311229616	311229861	2.630000e-80	309
32	TraesCS7D01G193500	chrUn	89.431	246	25	1	2352	2596	354261202	354261447	2.630000e-80	309
33	TraesCS7D01G193500	chr2D	92.289	1660	115	9	693	2344	395577914	395579568	0.000000e+00	2344
34	TraesCS7D01G193500	chr2D	92.229	1660	118	9	692	2344	482911641	482913296	0.000000e+00	2340
35	TraesCS7D01G193500	chr2D	91.489	893	65	5	1	890	38154164	38155048	0.000000e+00	1218
36	TraesCS7D01G193500	chr2D	96.721	366	12	0	2351	2716	308885077	308885442	6.430000e-171	610
37	TraesCS7D01G193500	chr1A	91.099	910	67	9	1	906	278216586	278217485	0.000000e+00	1219
38	TraesCS7D01G193500	chr1A	89.352	911	82	10	3	909	252768473	252767574	0.000000e+00	1131
39	TraesCS7D01G193500	chr6D	92.954	369	23	3	2351	2716	126409123	126408755	3.980000e-148	534
40	TraesCS7D01G193500	chr6D	90.909	374	26	4	2352	2717	55652191	55651818	1.880000e-136	496
41	TraesCS7D01G193500	chr6D	91.136	361	32	0	2351	2711	426958931	426959291	8.750000e-135	490
42	TraesCS7D01G193500	chr6D	89.101	367	33	5	2352	2711	41394500	41394866	1.480000e-122	449
43	TraesCS7D01G193500	chr6D	88.919	370	31	6	2352	2711	340960105	340960474	5.340000e-122	448
44	TraesCS7D01G193500	chr6D	88.859	368	33	5	2352	2711	144887240	144886873	1.920000e-121	446
45	TraesCS7D01G193500	chr6D	88.859	368	33	5	2352	2711	176860369	176860002	1.920000e-121	446

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G193500	chr7D	150589432	150592149	2717	False	5020.000000	5020	100.000000	1	2718	1	chr7D.!!$F1	2717
1	TraesCS7D01G193500	chr7D	420437282	420438935	1653	True	2372.000000	2372	92.586000	692	2344	1	chr7D.!!$R1	1652
2	TraesCS7D01G193500	chr7D	557860887	557862545	1658	True	2311.000000	2311	91.877000	692	2344	1	chr7D.!!$R2	1652
3	TraesCS7D01G193500	chr4D	170240335	170243678	3343	True	1943.500000	3356	92.723000	1	2714	2	chr4D.!!$R3	2713
4	TraesCS7D01G193500	chr4D	276862093	276862992	899	False	1225.000000	1225	91.199000	1	906	1	chr4D.!!$F1	905
5	TraesCS7D01G193500	chr5D	551042993	551044646	1653	True	2466.000000	2466	93.611000	695	2347	1	chr5D.!!$R2	1652
6	TraesCS7D01G193500	chr5D	196181350	196186375	5025	True	1601.500000	2610	94.490500	1	2716	2	chr5D.!!$R3	2715
7	TraesCS7D01G193500	chr5D	45267898	45271296	3398	False	1432.333333	2516	94.339333	3	2716	3	chr5D.!!$F1	2713
8	TraesCS7D01G193500	chr1D	344092467	344094847	2380	True	1784.500000	2431	92.553000	1	2344	2	chr1D.!!$R2	2343
9	TraesCS7D01G193500	chr1D	110914925	110918282	3357	True	926.000000	1284	93.606500	3	2714	2	chr1D.!!$R1	2711
10	TraesCS7D01G193500	chrUn	104752383	104755051	2668	False	1464.000000	2368	93.471000	686	2714	2	chrUn.!!$F6	2028
11	TraesCS7D01G193500	chrUn	311225712	311229861	4149	False	309.000000	309	89.431000	2352	2596	2	chrUn.!!$F7	244
12	TraesCS7D01G193500	chr2D	395577914	395579568	1654	False	2344.000000	2344	92.289000	693	2344	1	chr2D.!!$F3	1651
13	TraesCS7D01G193500	chr2D	482911641	482913296	1655	False	2340.000000	2340	92.229000	692	2344	1	chr2D.!!$F4	1652
14	TraesCS7D01G193500	chr2D	38154164	38155048	884	False	1218.000000	1218	91.489000	1	890	1	chr2D.!!$F1	889
15	TraesCS7D01G193500	chr1A	278216586	278217485	899	False	1219.000000	1219	91.099000	1	906	1	chr1A.!!$F1	905
16	TraesCS7D01G193500	chr1A	252767574	252768473	899	True	1131.000000	1131	89.352000	3	909	1	chr1A.!!$R1	906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
132	133	0.034059	CTTTGCTGACCGTCCAGAGT	59.966	55.0	5.6	0.0	36.29	3.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1817	3673	0.179062	CCTCAAGAGCCATTCTCCCG	60.179	60.0	0.0	0.0	42.9	5.14	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	4.307032	ACAGACCAGGATTTTAGCATGT	57.693	40.909	0.00	0.00	0.00	3.21
42	43	0.325577	TGCAGGCATAGAGGAGGTCA	60.326	55.000	0.00	0.00	0.00	4.02
95	96	5.016173	TGGCACATTGTAAAGAAGGCTAAT	58.984	37.500	0.00	0.00	0.00	1.73
132	133	0.034059	CTTTGCTGACCGTCCAGAGT	59.966	55.000	5.60	0.00	36.29	3.24
189	190	3.874383	TGATGGTGGAGGAGTTTGAAA	57.126	42.857	0.00	0.00	0.00	2.69
197	198	1.809547	GAGGAGTTTGAAAGGAGCTGC	59.190	52.381	0.00	0.00	0.00	5.25
304	305	2.224719	ACTTCATGCACTGCTTCTTCCT	60.225	45.455	1.98	0.00	0.00	3.36
345	346	0.107703	CAGCGAGGGGTTCAATGCTA	60.108	55.000	0.00	0.00	0.00	3.49
354	356	4.018050	AGGGGTTCAATGCTATTCTGAAGT	60.018	41.667	0.00	0.00	30.00	3.01
355	357	4.096984	GGGGTTCAATGCTATTCTGAAGTG	59.903	45.833	0.00	0.00	30.00	3.16
356	358	4.096984	GGGTTCAATGCTATTCTGAAGTGG	59.903	45.833	0.00	0.00	30.00	4.00
357	359	4.702131	GGTTCAATGCTATTCTGAAGTGGT	59.298	41.667	0.00	0.00	30.00	4.16
358	360	5.880332	GGTTCAATGCTATTCTGAAGTGGTA	59.120	40.000	0.00	0.00	30.00	3.25
470	472	3.022287	CAAACACCGCGCTCAAGT	58.978	55.556	5.56	0.00	0.00	3.16
552	554	9.515020	CAACAAGATTTTTAGCAAGTAAGTCAA	57.485	29.630	0.00	0.00	0.00	3.18
562	564	8.615878	TTAGCAAGTAAGTCAATGTGTGTTAT	57.384	30.769	0.00	0.00	0.00	1.89
575	577	8.387354	TCAATGTGTGTTATAGTCTTATTTGCG	58.613	33.333	0.00	0.00	0.00	4.85
671	675	1.656587	AGTGGCCATTGAGTACAGGA	58.343	50.000	9.72	0.00	0.00	3.86
689	716	7.783119	AGTACAGGATAACCATGATGTGTAGTA	59.217	37.037	0.00	0.00	38.94	1.82
756	875	7.039784	ACAGTTGCCATGTTTAATGAACTGTAT	60.040	33.333	17.24	2.59	46.21	2.29
759	878	8.987890	GTTGCCATGTTTAATGAACTGTATTTT	58.012	29.630	0.00	0.00	39.08	1.82
892	1019	4.750952	TGCATTTGCCATGTGAAAAATG	57.249	36.364	0.00	12.00	41.18	2.32
1012	1193	3.926821	ACGAAACCACACAAAACTTGT	57.073	38.095	0.00	0.00	46.75	3.16
1067	1248	1.839747	ACGGCTTACCAGGTGGACA	60.840	57.895	0.76	0.00	38.94	4.02
1148	1330	5.828328	CCAGACAAAGGAAGGAACTACTTTT	59.172	40.000	0.00	0.00	41.58	2.27
1288	1470	2.631428	CATTTCATACGGCGGCGG	59.369	61.111	35.05	17.87	0.00	6.13
1289	1471	3.276846	ATTTCATACGGCGGCGGC	61.277	61.111	35.05	24.75	38.90	6.53
1318	1500	0.036765	ACGCTAAAGACGCATTGGGA	60.037	50.000	7.82	0.00	0.00	4.37
1362	1545	0.108898	GCTGTGCATGACGAGAGACT	60.109	55.000	0.00	0.00	0.00	3.24
1451	1634	2.614779	CGTGCAAGAGTGATGAGACAT	58.385	47.619	0.00	0.00	0.00	3.06
1522	1706	5.012458	TGAGATCAAGAAGAGGAAAGCTGAA	59.988	40.000	0.00	0.00	0.00	3.02
1545	1729	1.785353	GCCTTACACAGGTTCCCCCA	61.785	60.000	0.00	0.00	46.07	4.96
1623	1807	1.547820	TGGAACAGCAAGCACACAAAA	59.452	42.857	0.00	0.00	0.00	2.44
1632	1816	1.846007	AGCACACAAAACCAGGTCAA	58.154	45.000	0.00	0.00	0.00	3.18
1676	1860	2.127708	AGGGGCGTCCAAAAGAGATAT	58.872	47.619	9.07	0.00	38.24	1.63
1827	3683	8.682710	TCTAAATTTGTAAAATCGGGAGAATGG	58.317	33.333	0.00	0.00	45.37	3.16
1848	3704	3.392616	GGCTCTTGAGGGGAATCAGAATA	59.607	47.826	0.00	0.00	0.00	1.75
1936	3793	0.538584	TCATCTGAATCTGCCGTGCT	59.461	50.000	0.00	0.00	0.00	4.40
1992	3849	2.466846	TCTGCCATGCCTGTTCTACTA	58.533	47.619	0.00	0.00	0.00	1.82
1996	3853	5.130311	TCTGCCATGCCTGTTCTACTAAATA	59.870	40.000	0.00	0.00	0.00	1.40
2045	3902	7.791029	TGCCATGTTAGTTCTACTGAATATGA	58.209	34.615	0.00	0.00	34.40	2.15
2091	3949	0.293723	CGCGTAGATTTCCGTGTTCG	59.706	55.000	0.00	0.00	0.00	3.95
2113	3971	4.915085	CGGTCAACACATTTTAATCCACAC	59.085	41.667	0.00	0.00	0.00	3.82
2174	4033	1.768112	CGACCTCGTGCAAAAACCGT	61.768	55.000	0.00	0.00	34.11	4.83
2223	4082	2.034685	TGCTAGCCGATACAGTTAGCAG	59.965	50.000	13.29	0.00	41.09	4.24
2258	4117	5.049828	CCAAAAAGCCAAACGAGAAAGAAT	58.950	37.500	0.00	0.00	0.00	2.40
2315	4174	4.933505	TTGCCATGTTTTCAGACATCAA	57.066	36.364	0.00	0.00	38.15	2.57
2316	4175	4.508461	TGCCATGTTTTCAGACATCAAG	57.492	40.909	0.00	0.00	38.15	3.02
2335	4194	2.238521	AGGACGCATTCAAAACACCAT	58.761	42.857	0.00	0.00	0.00	3.55
2357	4853	6.550108	CCATACTGGTACACCTAAGTAGTGAT	59.450	42.308	0.00	0.00	34.39	3.06
2416	8827	1.200483	CATGCGTAGTAAGGTCTGCG	58.800	55.000	0.00	0.00	43.99	5.18
2466	8877	3.951680	ACCTCAAAACGTTGGTTCTTCAT	59.048	39.130	0.00	0.00	34.62	2.57
2602	9015	6.206243	AGAGTTCACATCAAGAACAGAAATGG	59.794	38.462	8.54	0.00	45.93	3.16
2680	9094	5.009911	TGAATGACATAAAGCAGCAAGTGTT	59.990	36.000	0.00	0.00	0.00	3.32
2716	9131	8.818860	ACCCACATAGAATGTTTAGTTACAGTA	58.181	33.333	0.00	0.00	42.70	2.74
2717	9132	9.832445	CCCACATAGAATGTTTAGTTACAGTAT	57.168	33.333	0.00	0.00	42.70	2.12

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	0.618680	ACCTCCTCTATGCCTGCACA	60.619	55.000	0.00	0.00	0.00	4.57
42	43	1.518056	CTGTGCACTGCCAACGGAAT	61.518	55.000	19.41	0.00	0.00	3.01
81	82	4.434520	AGCGTCTCATTAGCCTTCTTTAC	58.565	43.478	0.00	0.00	0.00	2.01
189	190	1.065647	ATCATAGCCATGCAGCTCCT	58.934	50.000	3.37	0.00	43.67	3.69
197	198	8.573885	ACTTGATATGTTTCAATCATAGCCATG	58.426	33.333	2.08	0.00	35.20	3.66
256	257	1.732259	GCACCCAGTACATTCACTTCG	59.268	52.381	0.00	0.00	0.00	3.79
261	262	3.955145	CTGGCACCCAGTACATTCA	57.045	52.632	3.09	0.00	45.82	2.57
304	305	2.921121	CGTTGCGTAGTCTGCAGAAATA	59.079	45.455	20.19	11.87	44.28	1.40
345	346	4.464951	TCACGTACCATACCACTTCAGAAT	59.535	41.667	0.00	0.00	0.00	2.40
354	356	0.324923	AGGGCTCACGTACCATACCA	60.325	55.000	0.00	0.00	0.00	3.25
355	357	0.104304	CAGGGCTCACGTACCATACC	59.896	60.000	0.00	0.00	0.00	2.73
356	358	0.104304	CCAGGGCTCACGTACCATAC	59.896	60.000	0.00	0.00	0.00	2.39
357	359	1.682451	GCCAGGGCTCACGTACCATA	61.682	60.000	2.30	0.00	38.26	2.74
358	360	3.031417	GCCAGGGCTCACGTACCAT	62.031	63.158	2.30	0.00	38.26	3.55
470	472	9.854668	TGGTAAATATGTTAGCAATTTAGGCTA	57.145	29.630	0.00	0.00	42.62	3.93
552	554	6.315144	TGCGCAAATAAGACTATAACACACAT	59.685	34.615	8.16	0.00	0.00	3.21
575	577	3.243201	GCACCTATTACCTTCATGCTTGC	60.243	47.826	0.00	0.00	0.00	4.01
639	643	5.657745	TCAATGGCCACTTTCAACATATCAT	59.342	36.000	8.16	0.00	0.00	2.45
671	675	7.573710	ACATGGTTACTACACATCATGGTTAT	58.426	34.615	0.00	0.00	37.05	1.89
689	716	5.789643	ACTGCAGTTCATTAAACATGGTT	57.210	34.783	15.25	0.00	40.56	3.67
756	875	9.743057	CAACTACAGTTCATTAAACATGGAAAA	57.257	29.630	0.00	0.00	40.56	2.29
759	878	6.072175	GGCAACTACAGTTCATTAAACATGGA	60.072	38.462	0.00	0.00	40.56	3.41
892	1019	0.383231	GGCTATGGCAACTGCATGAC	59.617	55.000	2.58	0.00	44.36	3.06
1012	1193	6.538742	CACGCTTTATTTCTTCCTGGAATCTA	59.461	38.462	10.03	0.00	0.00	1.98
1067	1248	4.879545	AGAACACACCTTGAACGTATGTTT	59.120	37.500	0.98	0.00	38.78	2.83
1148	1330	2.779755	TCGCTTATCAAGGCCTTCAA	57.220	45.000	17.29	7.37	0.00	2.69
1289	1471	0.245539	TCTTTAGCGTCCCAAGTCCG	59.754	55.000	0.00	0.00	0.00	4.79
1304	1486	2.332654	GCGGTCCCAATGCGTCTTT	61.333	57.895	0.00	0.00	0.00	2.52
1306	1488	3.545124	TTGCGGTCCCAATGCGTCT	62.545	57.895	0.00	0.00	0.00	4.18
1318	1500	2.068837	CTGCATTTGATGTTTGCGGT	57.931	45.000	0.00	0.00	39.23	5.68
1362	1545	2.265367	TGGCTTCCATGGTTGACTCTA	58.735	47.619	12.58	0.00	0.00	2.43
1451	1634	2.045561	TGTTTTTCTGCAACCCTCGA	57.954	45.000	0.00	0.00	0.00	4.04
1632	1816	0.259938	GATGGAATGGGGCAGGTTCT	59.740	55.000	0.00	0.00	0.00	3.01
1638	1822	1.559368	CTTTGTGATGGAATGGGGCA	58.441	50.000	0.00	0.00	0.00	5.36
1676	1860	7.576403	TGAATCTCCAATCCTGATTTGTATCA	58.424	34.615	0.00	0.00	38.45	2.15
1816	3672	0.826715	CTCAAGAGCCATTCTCCCGA	59.173	55.000	0.00	0.00	42.90	5.14
1817	3673	0.179062	CCTCAAGAGCCATTCTCCCG	60.179	60.000	0.00	0.00	42.90	5.14
1827	3683	3.574354	ATTCTGATTCCCCTCAAGAGC	57.426	47.619	0.00	0.00	0.00	4.09
1848	3704	5.943349	TGATTCATGGCATTTCCTTTCAT	57.057	34.783	0.00	0.00	35.26	2.57
1936	3793	6.899393	AACATGGCAGATTCAGTAGAAAAA	57.101	33.333	0.00	0.00	37.29	1.94
1992	3849	5.893255	TCAGTAGAAAAGGCATGGCATATTT	59.107	36.000	22.64	17.92	0.00	1.40
1996	3853	3.370840	TCAGTAGAAAAGGCATGGCAT	57.629	42.857	22.64	6.61	0.00	4.40
2045	3902	8.978874	TGGCAGACTCAATATAAATAACATGT	57.021	30.769	0.00	0.00	0.00	3.21
2059	3917	0.179137	CTACGCGATGGCAGACTCAA	60.179	55.000	15.93	0.00	39.92	3.02
2091	3949	5.837437	TGTGTGGATTAAAATGTGTTGACC	58.163	37.500	0.00	0.00	0.00	4.02
2092	3950	9.638239	AATATGTGTGGATTAAAATGTGTTGAC	57.362	29.630	0.00	0.00	0.00	3.18
2113	3971	8.946935	CATAGTTTTCGCACACAATACAATATG	58.053	33.333	0.00	0.00	0.00	1.78
2158	4017	1.069500	CCTTACGGTTTTTGCACGAGG	60.069	52.381	0.24	0.00	0.00	4.63
2160	4019	1.666054	ACCTTACGGTTTTTGCACGA	58.334	45.000	0.24	0.00	42.13	4.35
2188	4047	2.864343	GGCTAGCATGGTAGTTTGTACG	59.136	50.000	27.79	6.51	0.00	3.67
2232	4091	0.750249	CTCGTTTGGCTTTTTGGGGT	59.250	50.000	0.00	0.00	0.00	4.95
2233	4092	1.036707	TCTCGTTTGGCTTTTTGGGG	58.963	50.000	0.00	0.00	0.00	4.96
2270	4129	7.849804	AATGTAGTTGATCAGTCATGGTTAC	57.150	36.000	0.00	0.00	33.56	2.50
2276	4135	5.255687	TGGCAAATGTAGTTGATCAGTCAT	58.744	37.500	0.00	0.00	33.56	3.06
2315	4174	1.686355	TGGTGTTTTGAATGCGTCCT	58.314	45.000	0.00	0.00	0.00	3.85
2316	4175	2.723124	ATGGTGTTTTGAATGCGTCC	57.277	45.000	0.00	0.00	0.00	4.79
2335	4194	5.889853	CCATCACTACTTAGGTGTACCAGTA	59.110	44.000	3.56	2.90	38.89	2.74
2344	4203	4.783227	ACATGGAACCATCACTACTTAGGT	59.217	41.667	3.10	0.00	33.90	3.08
2345	4204	5.129485	AGACATGGAACCATCACTACTTAGG	59.871	44.000	3.10	0.00	33.90	2.69
2347	4206	5.958380	AGAGACATGGAACCATCACTACTTA	59.042	40.000	3.10	0.00	33.90	2.24
2357	4853	2.711009	ACCTCAAAGAGACATGGAACCA	59.289	45.455	0.00	0.00	0.00	3.67
2416	8827	4.430137	TTCAATGCATTCAGAAGCTGAC	57.570	40.909	9.53	0.00	40.46	3.51
2466	8877	2.734606	CACTACGCGATTTTCCTTGACA	59.265	45.455	15.93	0.00	0.00	3.58
2497	8908	0.827089	CACAGGGCCCACATGACAAA	60.827	55.000	27.56	0.00	34.35	2.83
2510	8921	2.674380	GGAGCTTGCACCACAGGG	60.674	66.667	4.26	0.00	41.29	4.45
2602	9015	9.180678	CTTTACACATCATTTTTCCAACTACAC	57.819	33.333	0.00	0.00	0.00	2.90
2680	9094	8.472007	AACATTCTATGTGGGTTTACTTTTGA	57.528	30.769	0.00	0.00	44.07	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.