Multiple sequence alignment - TraesCS7D01G193300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G193300 chr7D 100.000 5199 0 0 1 5199 149749131 149743933 0.000000e+00 9601.0
1 TraesCS7D01G193300 chr7D 81.935 155 14 6 1573 1727 607198218 607198358 9.150000e-23 119.0
2 TraesCS7D01G193300 chr7D 87.059 85 5 1 4777 4861 187104953 187105031 1.990000e-14 91.6
3 TraesCS7D01G193300 chr7D 85.882 85 6 1 4769 4853 5068164 5068086 9.280000e-13 86.1
4 TraesCS7D01G193300 chr7D 84.091 88 11 2 4858 4945 555059515 555059431 1.200000e-11 82.4
5 TraesCS7D01G193300 chr7B 91.946 2061 111 27 774 2811 112031633 112029605 0.000000e+00 2835.0
6 TraesCS7D01G193300 chr7B 88.683 1405 79 34 2926 4270 112028755 112027371 0.000000e+00 1640.0
7 TraesCS7D01G193300 chr7B 94.737 209 8 1 4490 4698 112023156 112022951 6.490000e-84 322.0
8 TraesCS7D01G193300 chr7B 83.540 322 27 8 4852 5170 112022950 112022652 1.430000e-70 278.0
9 TraesCS7D01G193300 chr7B 86.395 147 10 2 1 145 112101083 112100945 9.020000e-33 152.0
10 TraesCS7D01G193300 chr7B 82.692 156 14 5 1573 1728 732805192 732805334 5.470000e-25 126.0
11 TraesCS7D01G193300 chr7B 97.222 72 2 0 4295 4366 112023341 112023270 7.070000e-24 122.0
12 TraesCS7D01G193300 chr7B 82.353 153 14 5 1573 1725 603931601 603931462 2.540000e-23 121.0
13 TraesCS7D01G193300 chr7B 95.455 66 3 0 4363 4428 112023227 112023162 7.120000e-19 106.0
14 TraesCS7D01G193300 chr7B 100.000 31 0 0 4699 4729 12962938 12962968 2.020000e-04 58.4
15 TraesCS7D01G193300 chr7A 89.501 1762 117 26 1572 3324 150240714 150239012 0.000000e+00 2167.0
16 TraesCS7D01G193300 chr7A 87.550 1486 104 25 153 1572 150242333 150240863 0.000000e+00 1644.0
17 TraesCS7D01G193300 chr7A 93.451 1023 42 3 3369 4366 150238667 150237645 0.000000e+00 1495.0
18 TraesCS7D01G193300 chr7A 94.894 235 6 4 4490 4724 150237109 150236881 3.830000e-96 363.0
19 TraesCS7D01G193300 chr7A 82.166 157 15 5 1573 1729 19983414 19983557 7.070000e-24 122.0
20 TraesCS7D01G193300 chr7A 81.529 157 16 8 1573 1729 534641635 534641778 3.290000e-22 117.0
21 TraesCS7D01G193300 chr7A 80.255 157 18 5 1573 1729 681749543 681749686 7.120000e-19 106.0
22 TraesCS7D01G193300 chr7A 75.379 264 39 15 667 907 671402682 671402422 2.560000e-18 104.0
23 TraesCS7D01G193300 chr7A 92.424 66 5 0 4363 4428 150237602 150237537 1.540000e-15 95.3
24 TraesCS7D01G193300 chr7A 79.730 148 16 9 1573 1720 409800566 409800433 1.540000e-15 95.3
25 TraesCS7D01G193300 chr7A 86.517 89 5 3 4769 4856 636899785 636899703 1.990000e-14 91.6
26 TraesCS7D01G193300 chr7A 92.308 39 3 0 5161 5199 621792743 621792781 7.270000e-04 56.5
27 TraesCS7D01G193300 chr5B 89.083 458 41 4 1115 1570 391047064 391047514 1.260000e-155 560.0
28 TraesCS7D01G193300 chr5B 77.799 527 88 19 2451 2952 391048504 391049026 1.090000e-76 298.0
29 TraesCS7D01G193300 chr5B 82.550 298 28 9 1997 2274 391047959 391048252 1.870000e-59 241.0
30 TraesCS7D01G193300 chr5B 83.539 243 24 7 4450 4680 391051457 391051695 4.080000e-51 213.0
31 TraesCS7D01G193300 chr5B 92.593 108 7 1 3910 4017 391050741 391050847 2.510000e-33 154.0
32 TraesCS7D01G193300 chr5B 82.803 157 14 5 1573 1729 121734146 121734003 1.520000e-25 128.0
33 TraesCS7D01G193300 chr5D 88.720 461 41 4 1115 1570 334232026 334232480 2.120000e-153 553.0
34 TraesCS7D01G193300 chr5D 86.638 232 22 3 4450 4672 334236701 334236932 1.120000e-61 248.0
35 TraesCS7D01G193300 chr5D 82.828 297 29 7 1997 2274 334232924 334233217 4.020000e-61 246.0
36 TraesCS7D01G193300 chr5D 91.071 112 7 3 3906 4017 334235981 334236089 1.170000e-31 148.0
37 TraesCS7D01G193300 chr5D 85.882 85 6 1 4769 4853 329276207 329276285 9.280000e-13 86.1
38 TraesCS7D01G193300 chr5A 87.864 412 42 3 1115 1524 436077552 436077957 1.310000e-130 477.0
39 TraesCS7D01G193300 chr5A 76.497 885 135 33 2451 3310 436079087 436079923 1.040000e-111 414.0
40 TraesCS7D01G193300 chr5A 86.266 233 21 5 1997 2221 436078566 436078795 5.200000e-60 243.0
41 TraesCS7D01G193300 chr5A 87.558 217 18 4 4450 4661 436082030 436082242 5.200000e-60 243.0
42 TraesCS7D01G193300 chr5A 86.957 138 10 6 3872 4005 436081301 436081434 1.170000e-31 148.0
43 TraesCS7D01G193300 chr5A 100.000 33 0 0 5167 5199 75962281 75962249 1.560000e-05 62.1
44 TraesCS7D01G193300 chr5A 100.000 33 0 0 5167 5199 98396187 98396219 1.560000e-05 62.1
45 TraesCS7D01G193300 chr3B 82.803 157 14 5 1573 1729 550539184 550539041 1.520000e-25 128.0
46 TraesCS7D01G193300 chr3B 79.630 108 14 4 4769 4875 70293938 70294038 2.600000e-08 71.3
47 TraesCS7D01G193300 chr3B 95.122 41 0 2 5160 5199 679110519 679110558 4.350000e-06 63.9
48 TraesCS7D01G193300 chr6B 81.529 157 16 5 1573 1729 466653266 466653409 3.290000e-22 117.0
49 TraesCS7D01G193300 chr6B 81.818 143 13 5 1587 1729 710247861 710247732 1.980000e-19 108.0
50 TraesCS7D01G193300 chr6B 84.615 91 8 3 4769 4853 347752046 347752136 9.280000e-13 86.1
51 TraesCS7D01G193300 chr6A 81.529 157 16 5 1573 1729 303374006 303374149 3.290000e-22 117.0
52 TraesCS7D01G193300 chr6A 94.872 39 2 0 5161 5199 396303025 396303063 1.560000e-05 62.1
53 TraesCS7D01G193300 chr1A 86.408 103 7 5 1628 1729 527637604 527637508 7.120000e-19 106.0
54 TraesCS7D01G193300 chr1A 84.615 91 7 2 4773 4862 477053402 477053486 3.340000e-12 84.2
55 TraesCS7D01G193300 chr2D 82.258 124 15 4 780 898 18206623 18206744 3.310000e-17 100.0
56 TraesCS7D01G193300 chr2D 100.000 34 0 0 5166 5199 13412926 13412893 4.350000e-06 63.9
57 TraesCS7D01G193300 chr1D 84.946 93 8 1 4768 4860 54972915 54973001 7.170000e-14 89.8
58 TraesCS7D01G193300 chr1D 85.393 89 7 1 4769 4857 355081137 355081219 2.580000e-13 87.9
59 TraesCS7D01G193300 chr1D 100.000 30 0 0 4700 4729 415647665 415647636 7.270000e-04 56.5
60 TraesCS7D01G193300 chr1D 100.000 30 0 0 4700 4729 456271755 456271726 7.270000e-04 56.5
61 TraesCS7D01G193300 chr3D 84.043 94 9 1 4769 4862 39620146 39620233 9.280000e-13 86.1
62 TraesCS7D01G193300 chr3D 87.755 49 5 1 4700 4747 20342640 20342592 7.270000e-04 56.5
63 TraesCS7D01G193300 chr3D 92.308 39 3 0 5161 5199 556024279 556024241 7.270000e-04 56.5
64 TraesCS7D01G193300 chr1B 100.000 34 0 0 5166 5199 227303626 227303593 4.350000e-06 63.9
65 TraesCS7D01G193300 chr4A 94.737 38 1 1 5162 5199 626650780 626650744 2.020000e-04 58.4
66 TraesCS7D01G193300 chr4A 97.059 34 0 1 4697 4729 698486298 698486331 7.270000e-04 56.5
67 TraesCS7D01G193300 chr2B 97.059 34 1 0 4700 4733 14610630 14610663 2.020000e-04 58.4
68 TraesCS7D01G193300 chr2B 97.059 34 1 0 4696 4729 689375507 689375540 2.020000e-04 58.4
69 TraesCS7D01G193300 chr6D 100.000 30 0 0 4700 4729 2919133 2919162 7.270000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G193300 chr7D 149743933 149749131 5198 True 9601.00 9601 100.00000 1 5199 1 chr7D.!!$R2 5198
1 TraesCS7D01G193300 chr7B 112027371 112031633 4262 True 2237.50 2835 90.31450 774 4270 2 chr7B.!!$R4 3496
2 TraesCS7D01G193300 chr7B 112022652 112023341 689 True 207.00 322 92.73850 4295 5170 4 chr7B.!!$R3 875
3 TraesCS7D01G193300 chr7A 150236881 150242333 5452 True 1152.86 2167 91.56400 153 4724 5 chr7A.!!$R4 4571
4 TraesCS7D01G193300 chr5B 391047064 391051695 4631 False 293.20 560 85.11280 1115 4680 5 chr5B.!!$F1 3565
5 TraesCS7D01G193300 chr5D 334232026 334236932 4906 False 298.75 553 87.31425 1115 4672 4 chr5D.!!$F2 3557
6 TraesCS7D01G193300 chr5A 436077552 436082242 4690 False 305.00 477 85.02840 1115 4661 5 chr5A.!!$F2 3546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 2.525105 GGTATTCCCTCTTTGGCCAA 57.475 50.000 16.05 16.05 0.00 4.52 F
133 134 2.575735 TGTCCCATGAGCCTTATTGTCA 59.424 45.455 0.00 0.00 0.00 3.58 F
1172 1229 2.520536 GGACGGGAGGATGATGGGG 61.521 68.421 0.00 0.00 0.00 4.96 F
1782 2141 0.744281 ACCAGTTTGCCTTTTCACCG 59.256 50.000 0.00 0.00 0.00 4.94 F
2024 2384 0.034059 ACTTCTTGCACGAGACCTGG 59.966 55.000 0.00 0.00 0.00 4.45 F
2637 3127 0.745845 AAAGCAGCCGAGGCATACAG 60.746 55.000 17.18 1.94 44.88 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 1159 0.035915 GGTGGAGAAGAGGAAGTGCC 60.036 60.000 0.00 0.0 0.00 5.01 R
1765 2124 0.102120 TGCGGTGAAAAGGCAAACTG 59.898 50.000 0.00 0.0 33.01 3.16 R
2025 2385 0.886490 GGAGTAAGGATGGCATGCCG 60.886 60.000 30.87 0.0 39.42 5.69 R
3319 4583 0.030773 GTGACGTGCTGTGTGAGAGA 59.969 55.000 0.00 0.0 0.00 3.10 R
3325 4589 0.035317 ATGATGGTGACGTGCTGTGT 59.965 50.000 0.00 0.0 0.00 3.72 R
4555 8511 1.666189 GTATGAGGCGACCTTTGAAGC 59.334 52.381 0.00 0.0 31.76 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.408182 AGTCATAGTGCACTGGGTATTC 57.592 45.455 29.57 12.26 0.00 1.75
22 23 3.134804 AGTCATAGTGCACTGGGTATTCC 59.865 47.826 29.57 7.18 0.00 3.01
34 35 2.525105 GGTATTCCCTCTTTGGCCAA 57.475 50.000 16.05 16.05 0.00 4.52
35 36 3.032265 GGTATTCCCTCTTTGGCCAAT 57.968 47.619 21.26 3.82 0.00 3.16
36 37 3.374764 GGTATTCCCTCTTTGGCCAATT 58.625 45.455 21.26 0.00 0.00 2.32
37 38 3.774766 GGTATTCCCTCTTTGGCCAATTT 59.225 43.478 21.26 0.92 0.00 1.82
38 39 4.959839 GGTATTCCCTCTTTGGCCAATTTA 59.040 41.667 21.26 3.10 0.00 1.40
39 40 5.602561 GGTATTCCCTCTTTGGCCAATTTAT 59.397 40.000 21.26 8.69 0.00 1.40
40 41 6.099701 GGTATTCCCTCTTTGGCCAATTTATT 59.900 38.462 21.26 2.63 0.00 1.40
41 42 6.641161 ATTCCCTCTTTGGCCAATTTATTT 57.359 33.333 21.26 0.00 0.00 1.40
42 43 6.446909 TTCCCTCTTTGGCCAATTTATTTT 57.553 33.333 21.26 0.00 0.00 1.82
43 44 6.446909 TCCCTCTTTGGCCAATTTATTTTT 57.553 33.333 21.26 0.00 0.00 1.94
44 45 6.237154 TCCCTCTTTGGCCAATTTATTTTTG 58.763 36.000 21.26 2.44 0.00 2.44
45 46 5.106197 CCCTCTTTGGCCAATTTATTTTTGC 60.106 40.000 21.26 0.00 0.00 3.68
46 47 5.706833 CCTCTTTGGCCAATTTATTTTTGCT 59.293 36.000 21.26 0.00 0.00 3.91
47 48 6.207221 CCTCTTTGGCCAATTTATTTTTGCTT 59.793 34.615 21.26 0.00 0.00 3.91
48 49 7.255555 CCTCTTTGGCCAATTTATTTTTGCTTT 60.256 33.333 21.26 0.00 0.00 3.51
49 50 7.424001 TCTTTGGCCAATTTATTTTTGCTTTG 58.576 30.769 21.26 0.00 0.00 2.77
50 51 6.949352 TTGGCCAATTTATTTTTGCTTTGA 57.051 29.167 16.05 0.00 0.00 2.69
51 52 6.311055 TGGCCAATTTATTTTTGCTTTGAC 57.689 33.333 0.61 0.00 0.00 3.18
52 53 6.060788 TGGCCAATTTATTTTTGCTTTGACT 58.939 32.000 0.61 0.00 0.00 3.41
53 54 6.204495 TGGCCAATTTATTTTTGCTTTGACTC 59.796 34.615 0.61 0.00 0.00 3.36
54 55 6.298853 GCCAATTTATTTTTGCTTTGACTCG 58.701 36.000 0.00 0.00 0.00 4.18
55 56 6.298853 CCAATTTATTTTTGCTTTGACTCGC 58.701 36.000 0.00 0.00 0.00 5.03
56 57 6.073873 CCAATTTATTTTTGCTTTGACTCGCA 60.074 34.615 0.00 0.00 0.00 5.10
57 58 7.343691 CAATTTATTTTTGCTTTGACTCGCAA 58.656 30.769 0.00 0.00 43.68 4.85
68 69 5.856126 TTTGACTCGCAAAGTATAGTTGG 57.144 39.130 0.00 0.00 41.37 3.77
69 70 4.530710 TGACTCGCAAAGTATAGTTGGT 57.469 40.909 0.00 0.00 38.74 3.67
70 71 4.242475 TGACTCGCAAAGTATAGTTGGTG 58.758 43.478 2.24 2.24 38.74 4.17
71 72 4.243270 GACTCGCAAAGTATAGTTGGTGT 58.757 43.478 7.89 2.24 38.74 4.16
72 73 5.047872 TGACTCGCAAAGTATAGTTGGTGTA 60.048 40.000 7.89 0.00 38.74 2.90
73 74 5.786311 ACTCGCAAAGTATAGTTGGTGTAA 58.214 37.500 7.89 0.00 36.07 2.41
74 75 5.867716 ACTCGCAAAGTATAGTTGGTGTAAG 59.132 40.000 7.89 2.78 36.07 2.34
75 76 5.172934 TCGCAAAGTATAGTTGGTGTAAGG 58.827 41.667 7.89 0.00 0.00 2.69
76 77 5.047164 TCGCAAAGTATAGTTGGTGTAAGGA 60.047 40.000 7.89 0.00 0.00 3.36
77 78 5.640357 CGCAAAGTATAGTTGGTGTAAGGAA 59.360 40.000 0.65 0.00 0.00 3.36
78 79 6.401796 CGCAAAGTATAGTTGGTGTAAGGAAC 60.402 42.308 0.65 0.00 0.00 3.62
79 80 6.428771 GCAAAGTATAGTTGGTGTAAGGAACA 59.571 38.462 0.00 0.00 35.06 3.18
80 81 7.040961 GCAAAGTATAGTTGGTGTAAGGAACAA 60.041 37.037 0.00 0.00 40.63 2.83
81 82 8.842280 CAAAGTATAGTTGGTGTAAGGAACAAA 58.158 33.333 0.00 0.00 40.63 2.83
82 83 9.582648 AAAGTATAGTTGGTGTAAGGAACAAAT 57.417 29.630 0.00 0.00 40.63 2.32
87 88 6.745116 AGTTGGTGTAAGGAACAAATAAAGC 58.255 36.000 0.00 0.00 40.63 3.51
88 89 6.549736 AGTTGGTGTAAGGAACAAATAAAGCT 59.450 34.615 0.00 0.00 40.63 3.74
89 90 7.722285 AGTTGGTGTAAGGAACAAATAAAGCTA 59.278 33.333 0.00 0.00 40.63 3.32
90 91 8.354426 GTTGGTGTAAGGAACAAATAAAGCTAA 58.646 33.333 0.00 0.00 40.63 3.09
91 92 8.466617 TGGTGTAAGGAACAAATAAAGCTAAA 57.533 30.769 0.00 0.00 40.63 1.85
92 93 8.915036 TGGTGTAAGGAACAAATAAAGCTAAAA 58.085 29.630 0.00 0.00 40.63 1.52
93 94 9.406828 GGTGTAAGGAACAAATAAAGCTAAAAG 57.593 33.333 0.00 0.00 40.63 2.27
94 95 9.406828 GTGTAAGGAACAAATAAAGCTAAAAGG 57.593 33.333 0.00 0.00 40.63 3.11
95 96 9.138596 TGTAAGGAACAAATAAAGCTAAAAGGT 57.861 29.630 0.00 0.00 34.29 3.50
96 97 9.406828 GTAAGGAACAAATAAAGCTAAAAGGTG 57.593 33.333 0.00 0.00 0.00 4.00
97 98 6.993079 AGGAACAAATAAAGCTAAAAGGTGG 58.007 36.000 0.00 0.00 0.00 4.61
98 99 6.553476 AGGAACAAATAAAGCTAAAAGGTGGT 59.447 34.615 0.00 0.00 0.00 4.16
99 100 6.866770 GGAACAAATAAAGCTAAAAGGTGGTC 59.133 38.462 0.00 0.00 0.00 4.02
100 101 7.255836 GGAACAAATAAAGCTAAAAGGTGGTCT 60.256 37.037 0.00 0.00 0.00 3.85
101 102 8.700439 AACAAATAAAGCTAAAAGGTGGTCTA 57.300 30.769 0.00 0.00 0.00 2.59
102 103 8.336801 ACAAATAAAGCTAAAAGGTGGTCTAG 57.663 34.615 0.00 0.00 0.00 2.43
103 104 7.942894 ACAAATAAAGCTAAAAGGTGGTCTAGT 59.057 33.333 0.00 0.00 0.00 2.57
104 105 9.444600 CAAATAAAGCTAAAAGGTGGTCTAGTA 57.555 33.333 0.00 0.00 0.00 1.82
106 107 9.668497 AATAAAGCTAAAAGGTGGTCTAGTAAG 57.332 33.333 0.00 0.00 0.00 2.34
107 108 6.930068 AAGCTAAAAGGTGGTCTAGTAAGA 57.070 37.500 0.00 0.00 0.00 2.10
108 109 7.497773 AAGCTAAAAGGTGGTCTAGTAAGAT 57.502 36.000 0.00 0.00 33.30 2.40
109 110 8.605325 AAGCTAAAAGGTGGTCTAGTAAGATA 57.395 34.615 0.00 0.00 33.30 1.98
110 111 8.605325 AGCTAAAAGGTGGTCTAGTAAGATAA 57.395 34.615 0.00 0.00 33.30 1.75
111 112 9.214962 AGCTAAAAGGTGGTCTAGTAAGATAAT 57.785 33.333 0.00 0.00 33.30 1.28
112 113 9.833917 GCTAAAAGGTGGTCTAGTAAGATAATT 57.166 33.333 0.00 0.00 33.30 1.40
115 116 9.668497 AAAAGGTGGTCTAGTAAGATAATTGTC 57.332 33.333 0.00 0.00 33.30 3.18
116 117 7.362802 AGGTGGTCTAGTAAGATAATTGTCC 57.637 40.000 0.00 0.00 33.30 4.02
117 118 6.326843 AGGTGGTCTAGTAAGATAATTGTCCC 59.673 42.308 0.00 0.00 33.30 4.46
118 119 6.099269 GGTGGTCTAGTAAGATAATTGTCCCA 59.901 42.308 0.00 0.00 33.30 4.37
119 120 7.202102 GGTGGTCTAGTAAGATAATTGTCCCAT 60.202 40.741 0.00 0.00 33.30 4.00
120 121 7.657761 GTGGTCTAGTAAGATAATTGTCCCATG 59.342 40.741 0.00 0.00 33.30 3.66
121 122 7.567250 TGGTCTAGTAAGATAATTGTCCCATGA 59.433 37.037 0.00 0.00 33.30 3.07
122 123 8.091449 GGTCTAGTAAGATAATTGTCCCATGAG 58.909 40.741 0.00 0.00 33.30 2.90
123 124 7.600752 GTCTAGTAAGATAATTGTCCCATGAGC 59.399 40.741 0.00 0.00 33.30 4.26
124 125 5.625150 AGTAAGATAATTGTCCCATGAGCC 58.375 41.667 0.00 0.00 0.00 4.70
125 126 4.803329 AAGATAATTGTCCCATGAGCCT 57.197 40.909 0.00 0.00 0.00 4.58
126 127 4.803329 AGATAATTGTCCCATGAGCCTT 57.197 40.909 0.00 0.00 0.00 4.35
127 128 5.912149 AGATAATTGTCCCATGAGCCTTA 57.088 39.130 0.00 0.00 0.00 2.69
128 129 6.460103 AGATAATTGTCCCATGAGCCTTAT 57.540 37.500 0.00 0.00 0.00 1.73
129 130 6.856757 AGATAATTGTCCCATGAGCCTTATT 58.143 36.000 0.00 0.00 0.00 1.40
130 131 6.718454 AGATAATTGTCCCATGAGCCTTATTG 59.282 38.462 0.00 0.00 0.00 1.90
131 132 3.737559 TTGTCCCATGAGCCTTATTGT 57.262 42.857 0.00 0.00 0.00 2.71
132 133 3.281727 TGTCCCATGAGCCTTATTGTC 57.718 47.619 0.00 0.00 0.00 3.18
133 134 2.575735 TGTCCCATGAGCCTTATTGTCA 59.424 45.455 0.00 0.00 0.00 3.58
134 135 3.209410 GTCCCATGAGCCTTATTGTCAG 58.791 50.000 0.00 0.00 0.00 3.51
135 136 2.846206 TCCCATGAGCCTTATTGTCAGT 59.154 45.455 0.00 0.00 0.00 3.41
136 137 4.037222 TCCCATGAGCCTTATTGTCAGTA 58.963 43.478 0.00 0.00 0.00 2.74
137 138 4.473196 TCCCATGAGCCTTATTGTCAGTAA 59.527 41.667 0.00 0.00 0.00 2.24
138 139 5.132648 TCCCATGAGCCTTATTGTCAGTAAT 59.867 40.000 0.00 0.00 0.00 1.89
139 140 5.471456 CCCATGAGCCTTATTGTCAGTAATC 59.529 44.000 0.00 0.00 0.00 1.75
140 141 6.057533 CCATGAGCCTTATTGTCAGTAATCA 58.942 40.000 0.00 0.00 0.00 2.57
141 142 6.017605 CCATGAGCCTTATTGTCAGTAATCAC 60.018 42.308 0.00 0.00 0.00 3.06
142 143 6.048732 TGAGCCTTATTGTCAGTAATCACA 57.951 37.500 0.00 0.00 0.00 3.58
143 144 6.653020 TGAGCCTTATTGTCAGTAATCACAT 58.347 36.000 0.00 0.00 0.00 3.21
144 145 7.791029 TGAGCCTTATTGTCAGTAATCACATA 58.209 34.615 0.00 0.00 0.00 2.29
145 146 7.710907 TGAGCCTTATTGTCAGTAATCACATAC 59.289 37.037 0.00 0.00 0.00 2.39
146 147 6.992715 AGCCTTATTGTCAGTAATCACATACC 59.007 38.462 0.00 0.00 0.00 2.73
147 148 6.765989 GCCTTATTGTCAGTAATCACATACCA 59.234 38.462 0.00 0.00 0.00 3.25
148 149 7.282224 GCCTTATTGTCAGTAATCACATACCAA 59.718 37.037 0.00 0.00 0.00 3.67
149 150 8.830580 CCTTATTGTCAGTAATCACATACCAAG 58.169 37.037 0.00 0.00 0.00 3.61
150 151 9.599866 CTTATTGTCAGTAATCACATACCAAGA 57.400 33.333 0.00 0.00 0.00 3.02
151 152 9.952030 TTATTGTCAGTAATCACATACCAAGAA 57.048 29.630 0.00 0.00 0.00 2.52
199 200 2.602878 GGCAATCTGACATTGTTGCAG 58.397 47.619 13.15 6.07 46.46 4.41
235 236 9.781834 TTAGTTACTCACAACATTTCAAACTTG 57.218 29.630 0.00 0.00 0.00 3.16
288 289 8.500753 TTAGAACCAATTATATCGCAAACTGT 57.499 30.769 0.00 0.00 0.00 3.55
303 304 5.557703 CGCAAACTGTATATCTGTGATGCAG 60.558 44.000 0.00 7.63 46.34 4.41
311 312 8.785329 TGTATATCTGTGATGCAGTTTTACAA 57.215 30.769 0.00 0.00 45.23 2.41
327 328 7.527084 GTTTTACAAAACTTATGCAACCACA 57.473 32.000 9.75 0.00 43.68 4.17
363 364 8.970691 AATTTAGAATTGAACACATGCTACAC 57.029 30.769 0.00 0.00 0.00 2.90
372 373 3.581755 ACACATGCTACACGACGTATTT 58.418 40.909 0.00 0.00 0.00 1.40
468 483 4.217118 ACCAAAATCTGCAGTCTTGTGATC 59.783 41.667 14.67 0.00 0.00 2.92
469 484 4.458295 CCAAAATCTGCAGTCTTGTGATCT 59.542 41.667 14.67 0.00 0.00 2.75
496 514 5.718649 TTTGCGAATAGTCTTGTGATAGC 57.281 39.130 0.00 0.00 0.00 2.97
536 555 7.847487 TCAAATGTGTAGTTCTGTAGTTTTCG 58.153 34.615 0.00 0.00 0.00 3.46
540 559 6.567050 TGTGTAGTTCTGTAGTTTTCGTTCT 58.433 36.000 0.00 0.00 0.00 3.01
568 587 9.850628 TGTAATATCACTCTAACAACTACACAC 57.149 33.333 0.00 0.00 0.00 3.82
569 588 9.007252 GTAATATCACTCTAACAACTACACACG 57.993 37.037 0.00 0.00 0.00 4.49
580 599 3.036075 ACTACACACGGGCTTAAAGAC 57.964 47.619 0.00 0.00 0.00 3.01
587 606 4.935808 CACACGGGCTTAAAGACTAAGAAT 59.064 41.667 0.00 0.00 0.00 2.40
591 610 5.875359 ACGGGCTTAAAGACTAAGAATCAAG 59.125 40.000 0.00 0.00 0.00 3.02
648 667 9.744468 AAGTTATGTCAAAATGTTAGTTTGGAC 57.256 29.630 2.50 0.99 40.74 4.02
650 669 9.744468 GTTATGTCAAAATGTTAGTTTGGACTT 57.256 29.630 8.01 5.05 40.89 3.01
653 672 9.965824 ATGTCAAAATGTTAGTTTGGACTTTAG 57.034 29.630 8.01 0.00 40.89 1.85
654 673 9.179909 TGTCAAAATGTTAGTTTGGACTTTAGA 57.820 29.630 8.01 0.00 40.89 2.10
660 679 9.574516 AATGTTAGTTTGGACTTTAGATTGTCT 57.425 29.630 0.00 0.00 37.33 3.41
661 680 8.974060 TGTTAGTTTGGACTTTAGATTGTCTT 57.026 30.769 0.00 0.00 37.33 3.01
662 681 9.052759 TGTTAGTTTGGACTTTAGATTGTCTTC 57.947 33.333 0.00 0.00 37.33 2.87
663 682 9.274206 GTTAGTTTGGACTTTAGATTGTCTTCT 57.726 33.333 0.00 0.00 37.33 2.85
664 683 9.847224 TTAGTTTGGACTTTAGATTGTCTTCTT 57.153 29.630 0.00 0.00 37.33 2.52
727 748 9.941325 AAGGCATGACAAATCAAACATATTTTA 57.059 25.926 0.00 0.00 38.69 1.52
754 776 9.578576 AGACAATTTATGTAGGCATCATAATGT 57.421 29.630 14.57 14.57 44.12 2.71
765 787 9.884465 GTAGGCATCATAATGTCAAATTTAGTC 57.116 33.333 0.00 0.00 40.10 2.59
768 790 7.417612 GCATCATAATGTCAAATTTAGTCGGT 58.582 34.615 0.00 0.00 35.18 4.69
786 818 4.092091 GTCGGTGAGCTCTGACAATAAAAG 59.908 45.833 21.54 1.85 41.68 2.27
797 829 4.130857 TGACAATAAAAGGAACTGCGACA 58.869 39.130 0.00 0.00 40.86 4.35
803 835 8.138712 ACAATAAAAGGAACTGCGACAAATTTA 58.861 29.630 0.00 0.00 40.86 1.40
855 888 7.551455 GCAAACATAATTTGCCATGAAAAAC 57.449 32.000 12.31 0.00 46.51 2.43
861 894 9.118300 ACATAATTTGCCATGAAAAACTTTTGA 57.882 25.926 0.00 0.00 0.00 2.69
898 933 8.712285 AAAAATCTGACATTTGCTGGATATTG 57.288 30.769 0.00 0.00 0.00 1.90
934 972 7.581213 TTCTGAAAAGCCAACTGATTTAGAA 57.419 32.000 0.00 0.00 31.43 2.10
937 975 9.295825 TCTGAAAAGCCAACTGATTTAGAATAA 57.704 29.630 0.00 0.00 0.00 1.40
938 976 9.912634 CTGAAAAGCCAACTGATTTAGAATAAA 57.087 29.630 0.00 0.00 0.00 1.40
974 1027 5.898174 TGCGAAAAATCGGTCTAGATTAGA 58.102 37.500 0.00 0.00 39.69 2.10
1027 1080 3.451894 GGTGCCAAGCCCGGATTG 61.452 66.667 8.54 8.54 0.00 2.67
1106 1159 2.808315 CCATCGTCCTCACCTCCG 59.192 66.667 0.00 0.00 0.00 4.63
1172 1229 2.520536 GGACGGGAGGATGATGGGG 61.521 68.421 0.00 0.00 0.00 4.96
1765 2124 1.156736 CGTGAATCCACAACCTCACC 58.843 55.000 0.00 0.00 43.34 4.02
1782 2141 0.744281 ACCAGTTTGCCTTTTCACCG 59.256 50.000 0.00 0.00 0.00 4.94
1819 2179 3.501828 TGTTGGTGTGAGCATGTCATAAC 59.498 43.478 0.00 0.00 37.56 1.89
1820 2180 2.710377 TGGTGTGAGCATGTCATAACC 58.290 47.619 17.02 17.02 41.80 2.85
1828 2188 6.043127 TGTGAGCATGTCATAACCCATATAGT 59.957 38.462 0.00 0.00 37.56 2.12
1839 2199 9.938280 TCATAACCCATATAGTAATTGCAGTAC 57.062 33.333 0.00 2.23 0.00 2.73
1845 2205 9.155975 CCCATATAGTAATTGCAGTACATCTTC 57.844 37.037 11.07 0.00 0.00 2.87
1864 2224 7.776969 ACATCTTCTGCACCTATTTGATATTGT 59.223 33.333 0.00 0.00 0.00 2.71
2023 2383 2.724977 TACTTCTTGCACGAGACCTG 57.275 50.000 0.00 0.00 0.00 4.00
2024 2384 0.034059 ACTTCTTGCACGAGACCTGG 59.966 55.000 0.00 0.00 0.00 4.45
2025 2385 1.294659 CTTCTTGCACGAGACCTGGC 61.295 60.000 0.00 0.00 0.00 4.85
2289 2708 2.290323 GCACTGGTTGACCCTTGTAGAT 60.290 50.000 0.00 0.00 34.29 1.98
2401 2890 7.707893 TCTTACAAGTACAAAGACACCTTACAC 59.292 37.037 0.00 0.00 31.15 2.90
2402 2891 5.736813 ACAAGTACAAAGACACCTTACACA 58.263 37.500 0.00 0.00 31.15 3.72
2419 2908 6.033831 CCTTACACAAAATCAGCATTTAAGCG 59.966 38.462 0.00 0.00 40.15 4.68
2445 2934 1.683943 CACATGCTTGGGATAGGGTG 58.316 55.000 4.44 0.00 0.00 4.61
2514 3003 7.097192 AGTTATAGCTTCTGATCGTGTTTTGA 58.903 34.615 0.00 0.00 0.00 2.69
2518 3007 3.251004 GCTTCTGATCGTGTTTTGAAGGT 59.749 43.478 0.00 0.00 33.62 3.50
2524 3013 4.693566 TGATCGTGTTTTGAAGGTCATACC 59.306 41.667 0.00 0.00 38.99 2.73
2629 3119 1.094073 CATCCTCCAAAGCAGCCGAG 61.094 60.000 0.00 0.00 0.00 4.63
2637 3127 0.745845 AAAGCAGCCGAGGCATACAG 60.746 55.000 17.18 1.94 44.88 2.74
2734 3231 8.193438 CCCTAATTAGAAAAGCAGGAAAATGAG 58.807 37.037 14.28 0.00 0.00 2.90
2826 3529 8.039603 ACAATCACTAACGATTAAATGAGCAA 57.960 30.769 0.00 0.00 33.82 3.91
2895 3613 2.031245 TCATGCTTACAACAAACCAGCG 60.031 45.455 0.00 0.00 32.85 5.18
2908 3626 4.279671 ACAAACCAGCGAAACCATTATTCA 59.720 37.500 0.00 0.00 0.00 2.57
2974 4230 8.641498 ATGTCATTAACTGATTTCCTTCAAGT 57.359 30.769 0.00 0.00 35.97 3.16
2977 4233 8.233190 GTCATTAACTGATTTCCTTCAAGTCTG 58.767 37.037 0.00 0.00 35.97 3.51
3010 4266 4.406648 CAGTATGTCTTCTGCCCATACA 57.593 45.455 10.57 0.00 42.05 2.29
3011 4267 4.122776 CAGTATGTCTTCTGCCCATACAC 58.877 47.826 10.57 0.00 42.05 2.90
3022 4278 2.092323 GCCCATACACCTTTTCTGGTC 58.908 52.381 0.00 0.00 38.45 4.02
3059 4315 6.013379 ACCTTCATCAGTAATCAAGTTCTCCA 60.013 38.462 0.00 0.00 0.00 3.86
3144 4401 2.038033 TCTACCTTCAACCCAAACCTCG 59.962 50.000 0.00 0.00 0.00 4.63
3203 4460 7.609097 ATTGCTCAAGATCTTATACAGAGGA 57.391 36.000 17.03 13.30 33.87 3.71
3311 4575 1.993370 GCAAGTGCAACGTACCTCTAG 59.007 52.381 0.00 0.00 45.86 2.43
3317 4581 4.053295 GTGCAACGTACCTCTAGTTTGAA 58.947 43.478 0.00 0.00 0.00 2.69
3319 4583 5.178809 GTGCAACGTACCTCTAGTTTGAAAT 59.821 40.000 0.00 0.00 0.00 2.17
3325 4589 6.433404 ACGTACCTCTAGTTTGAAATCTCTCA 59.567 38.462 0.00 0.00 0.00 3.27
3334 4627 2.407090 TGAAATCTCTCACACAGCACG 58.593 47.619 0.00 0.00 0.00 5.34
3398 4964 0.931005 GTTTCGGCTTAGCTGATCCG 59.069 55.000 17.08 14.08 43.86 4.18
3538 5104 5.077134 TGAGATGCCAATATAGGTCATCG 57.923 43.478 0.00 0.00 42.18 3.84
3581 5160 8.829373 AGAATGATCATTTTAGGCTAAAACCT 57.171 30.769 29.19 18.46 40.12 3.50
3585 5164 8.288689 TGATCATTTTAGGCTAAAACCTTACC 57.711 34.615 29.19 17.92 40.12 2.85
3667 5254 1.542030 TGTTTGCAACTGTTCACCGTT 59.458 42.857 0.00 0.00 0.00 4.44
4008 7418 6.378564 TCAACAAGAGAGGAGTAGAATCGATT 59.621 38.462 11.20 11.20 0.00 3.34
4037 7449 4.096681 TCAACAAGAGAGGGCTAGAATCA 58.903 43.478 0.00 0.00 0.00 2.57
4116 7539 9.646336 GTAACAAAACCTTATAAGCATGTATCG 57.354 33.333 6.99 0.00 0.00 2.92
4121 7544 8.677148 AAACCTTATAAGCATGTATCGAATGT 57.323 30.769 6.99 0.00 0.00 2.71
4145 7568 6.483640 GTCAGTTCTTGATGTATTATGGACCC 59.516 42.308 0.00 0.00 38.29 4.46
4155 7585 1.575419 TTATGGACCCGTAGTTGCCT 58.425 50.000 0.00 0.00 0.00 4.75
4156 7586 1.575419 TATGGACCCGTAGTTGCCTT 58.425 50.000 0.00 0.00 0.00 4.35
4246 7679 4.336889 TCTTGAAACTGTCGACCAGATT 57.663 40.909 14.12 11.07 44.49 2.40
4260 7693 7.770433 TGTCGACCAGATTAGATTGATTTGATT 59.230 33.333 14.12 0.00 0.00 2.57
4314 7767 1.916181 ACATAAACTGGGAGGGAGTGG 59.084 52.381 0.00 0.00 0.00 4.00
4349 7803 4.749048 TCTGGAGATCAGATAGGGCTAA 57.251 45.455 0.00 0.00 46.71 3.09
4455 8277 8.734386 GGTGTCATCTGAATTTTGAGATAGTTT 58.266 33.333 0.00 0.00 29.83 2.66
4555 8511 1.200716 CATACAACAGCACTGCCAAGG 59.799 52.381 0.00 0.00 0.00 3.61
4614 8570 2.351157 GCATGCTTGACCTTGAACTGTC 60.351 50.000 11.37 0.00 0.00 3.51
4647 8603 7.867403 TCAAACATGAAGCAAATTTCTTACTCC 59.133 33.333 0.00 0.00 0.00 3.85
4648 8604 6.899393 ACATGAAGCAAATTTCTTACTCCA 57.101 33.333 0.00 0.00 0.00 3.86
4718 8674 2.605257 CACTCCCTCCGTCCCATAATA 58.395 52.381 0.00 0.00 0.00 0.98
4724 8680 6.013639 ACTCCCTCCGTCCCATAATATAAAAG 60.014 42.308 0.00 0.00 0.00 2.27
4725 8681 5.847817 TCCCTCCGTCCCATAATATAAAAGT 59.152 40.000 0.00 0.00 0.00 2.66
4726 8682 5.938125 CCCTCCGTCCCATAATATAAAAGTG 59.062 44.000 0.00 0.00 0.00 3.16
4727 8683 6.465321 CCCTCCGTCCCATAATATAAAAGTGT 60.465 42.308 0.00 0.00 0.00 3.55
4728 8684 6.996282 CCTCCGTCCCATAATATAAAAGTGTT 59.004 38.462 0.00 0.00 0.00 3.32
4729 8685 8.152246 CCTCCGTCCCATAATATAAAAGTGTTA 58.848 37.037 0.00 0.00 0.00 2.41
4730 8686 9.550406 CTCCGTCCCATAATATAAAAGTGTTAA 57.450 33.333 0.00 0.00 0.00 2.01
4731 8687 9.902684 TCCGTCCCATAATATAAAAGTGTTAAA 57.097 29.630 0.00 0.00 0.00 1.52
4775 8731 6.742559 TTTTACACTAGTGTTTCTCCCTCT 57.257 37.500 32.15 7.16 41.83 3.69
4776 8732 5.979288 TTACACTAGTGTTTCTCCCTCTC 57.021 43.478 32.15 0.00 41.83 3.20
4777 8733 3.845860 ACACTAGTGTTTCTCCCTCTCA 58.154 45.455 22.95 0.00 41.83 3.27
4778 8734 4.421131 ACACTAGTGTTTCTCCCTCTCAT 58.579 43.478 22.95 0.00 41.83 2.90
4779 8735 5.580998 ACACTAGTGTTTCTCCCTCTCATA 58.419 41.667 22.95 0.00 41.83 2.15
4780 8736 6.017192 ACACTAGTGTTTCTCCCTCTCATAA 58.983 40.000 22.95 0.00 41.83 1.90
4781 8737 6.670027 ACACTAGTGTTTCTCCCTCTCATAAT 59.330 38.462 22.95 0.00 41.83 1.28
4782 8738 7.839705 ACACTAGTGTTTCTCCCTCTCATAATA 59.160 37.037 22.95 0.00 41.83 0.98
4783 8739 8.865090 CACTAGTGTTTCTCCCTCTCATAATAT 58.135 37.037 15.06 0.00 0.00 1.28
4787 8743 9.661954 AGTGTTTCTCCCTCTCATAATATAAGA 57.338 33.333 0.00 0.00 0.00 2.10
4788 8744 9.921637 GTGTTTCTCCCTCTCATAATATAAGAG 57.078 37.037 0.00 0.00 36.99 2.85
4789 8745 9.661954 TGTTTCTCCCTCTCATAATATAAGAGT 57.338 33.333 0.17 0.00 35.76 3.24
4790 8746 9.921637 GTTTCTCCCTCTCATAATATAAGAGTG 57.078 37.037 0.17 0.00 35.76 3.51
4791 8747 9.661954 TTTCTCCCTCTCATAATATAAGAGTGT 57.338 33.333 0.17 0.00 35.76 3.55
4792 8748 9.661954 TTCTCCCTCTCATAATATAAGAGTGTT 57.338 33.333 0.17 0.00 35.76 3.32
4793 8749 9.661954 TCTCCCTCTCATAATATAAGAGTGTTT 57.338 33.333 0.17 0.00 35.76 2.83
4810 8766 5.539582 GTGTTTTGACACTTGACAGTACA 57.460 39.130 0.00 0.00 37.62 2.90
4811 8767 5.321516 GTGTTTTGACACTTGACAGTACAC 58.678 41.667 0.00 10.26 37.62 2.90
4812 8768 5.121768 GTGTTTTGACACTTGACAGTACACT 59.878 40.000 14.78 0.00 37.62 3.55
4813 8769 6.311935 GTGTTTTGACACTTGACAGTACACTA 59.688 38.462 14.78 0.00 37.62 2.74
4814 8770 6.533723 TGTTTTGACACTTGACAGTACACTAG 59.466 38.462 0.00 0.00 0.00 2.57
4815 8771 5.847111 TTGACACTTGACAGTACACTAGT 57.153 39.130 0.00 0.00 0.00 2.57
4816 8772 5.183014 TGACACTTGACAGTACACTAGTG 57.817 43.478 21.44 21.44 42.28 2.74
4818 8774 5.824097 TGACACTTGACAGTACACTAGTGTA 59.176 40.000 27.99 27.99 46.42 2.90
4819 8775 6.319405 TGACACTTGACAGTACACTAGTGTAA 59.681 38.462 32.02 18.93 46.42 2.41
4820 8776 7.104043 ACACTTGACAGTACACTAGTGTAAA 57.896 36.000 32.02 22.02 46.33 2.01
4821 8777 7.549839 ACACTTGACAGTACACTAGTGTAAAA 58.450 34.615 32.02 20.37 46.33 1.52
4822 8778 8.036575 ACACTTGACAGTACACTAGTGTAAAAA 58.963 33.333 32.02 20.64 46.33 1.94
4847 8803 9.471702 AAATGCTCTTATATTATGGAATGGAGG 57.528 33.333 0.00 0.00 0.00 4.30
4848 8804 6.962182 TGCTCTTATATTATGGAATGGAGGG 58.038 40.000 0.00 0.00 0.00 4.30
4849 8805 6.735229 TGCTCTTATATTATGGAATGGAGGGA 59.265 38.462 0.00 0.00 0.00 4.20
4850 8806 7.092712 TGCTCTTATATTATGGAATGGAGGGAG 60.093 40.741 0.00 0.00 0.00 4.30
4866 8822 5.309806 TGGAGGGAGTAATTATTAAGGCCTC 59.690 44.000 5.23 0.00 0.00 4.70
4875 8831 9.920946 AGTAATTATTAAGGCCTCTTTGATTCA 57.079 29.630 5.23 0.00 34.59 2.57
4877 8833 8.593945 AATTATTAAGGCCTCTTTGATTCACA 57.406 30.769 5.23 0.00 34.59 3.58
4945 8901 4.445453 TGTCATGCTCATCACAATCCTAC 58.555 43.478 0.00 0.00 0.00 3.18
4947 8903 4.877823 GTCATGCTCATCACAATCCTACAA 59.122 41.667 0.00 0.00 0.00 2.41
4948 8904 5.355071 GTCATGCTCATCACAATCCTACAAA 59.645 40.000 0.00 0.00 0.00 2.83
4953 8909 6.127925 TGCTCATCACAATCCTACAAAATGAC 60.128 38.462 0.00 0.00 0.00 3.06
4964 8920 4.216687 CCTACAAAATGACCGGTGCTTAAA 59.783 41.667 14.63 0.00 0.00 1.52
4974 8930 1.744456 CGGTGCTTAAAGCCCGGAATA 60.744 52.381 0.73 0.00 45.16 1.75
4978 8934 2.025699 TGCTTAAAGCCCGGAATAGGTT 60.026 45.455 0.73 0.00 41.51 3.50
4979 8935 2.617308 GCTTAAAGCCCGGAATAGGTTC 59.383 50.000 0.73 0.00 34.48 3.62
4980 8936 2.607631 TAAAGCCCGGAATAGGTTCG 57.392 50.000 0.73 0.00 35.10 3.95
4981 8937 0.107361 AAAGCCCGGAATAGGTTCGG 60.107 55.000 0.73 0.00 35.10 4.30
4984 8940 2.110420 CCGGAATAGGTTCGGGGC 59.890 66.667 0.00 0.00 45.91 5.80
4985 8941 2.440817 CCGGAATAGGTTCGGGGCT 61.441 63.158 0.00 0.00 45.91 5.19
4986 8942 1.525442 CGGAATAGGTTCGGGGCTT 59.475 57.895 0.00 0.00 35.10 4.35
4987 8943 0.107361 CGGAATAGGTTCGGGGCTTT 60.107 55.000 0.00 0.00 35.10 3.51
4988 8944 1.680860 CGGAATAGGTTCGGGGCTTTT 60.681 52.381 0.00 0.00 35.10 2.27
4989 8945 1.749063 GGAATAGGTTCGGGGCTTTTG 59.251 52.381 0.00 0.00 35.10 2.44
4990 8946 2.619590 GGAATAGGTTCGGGGCTTTTGA 60.620 50.000 0.00 0.00 35.10 2.69
4991 8947 2.891191 ATAGGTTCGGGGCTTTTGAA 57.109 45.000 0.00 0.00 0.00 2.69
4992 8948 1.900245 TAGGTTCGGGGCTTTTGAAC 58.100 50.000 0.00 0.00 40.90 3.18
4993 8949 0.185175 AGGTTCGGGGCTTTTGAACT 59.815 50.000 4.56 0.00 41.27 3.01
4994 8950 0.313987 GGTTCGGGGCTTTTGAACTG 59.686 55.000 4.56 0.00 41.27 3.16
4995 8951 0.313987 GTTCGGGGCTTTTGAACTGG 59.686 55.000 0.00 0.00 39.07 4.00
4996 8952 0.825840 TTCGGGGCTTTTGAACTGGG 60.826 55.000 0.00 0.00 0.00 4.45
4997 8953 1.530655 CGGGGCTTTTGAACTGGGT 60.531 57.895 0.00 0.00 0.00 4.51
4998 8954 1.805428 CGGGGCTTTTGAACTGGGTG 61.805 60.000 0.00 0.00 0.00 4.61
5026 8982 2.685897 CTCTGTTTCAAAACGGTGGGAA 59.314 45.455 12.80 0.00 43.92 3.97
5050 9009 4.124851 AGGCCTATTTCACACTCTAACG 57.875 45.455 1.29 0.00 0.00 3.18
5069 9028 7.447594 TCTAACGGTTTATGTTCTTCCTTCTT 58.552 34.615 0.00 0.00 0.00 2.52
5070 9029 6.954487 AACGGTTTATGTTCTTCCTTCTTT 57.046 33.333 0.00 0.00 0.00 2.52
5078 9037 5.835113 TGTTCTTCCTTCTTTCAAACAGG 57.165 39.130 0.00 0.00 0.00 4.00
5080 9039 4.519906 TCTTCCTTCTTTCAAACAGGGT 57.480 40.909 0.00 0.00 0.00 4.34
5081 9040 4.207165 TCTTCCTTCTTTCAAACAGGGTG 58.793 43.478 0.00 0.00 0.00 4.61
5087 9046 3.702792 TCTTTCAAACAGGGTGGTTTCA 58.297 40.909 0.00 0.00 38.86 2.69
5091 9050 2.025793 TCAAACAGGGTGGTTTCACTCA 60.026 45.455 0.00 0.00 46.55 3.41
5101 9060 4.102649 GTGGTTTCACTCAAAGGTTTTCG 58.897 43.478 0.00 0.00 40.58 3.46
5110 9069 5.003121 CACTCAAAGGTTTTCGTTTCGTTTC 59.997 40.000 0.00 0.00 36.02 2.78
5133 9092 2.697751 CTGGAAACCCCATCAAACACAA 59.302 45.455 0.00 0.00 45.57 3.33
5146 9105 0.878961 AACACAAGACGCTTCGGGTC 60.879 55.000 3.20 3.20 44.21 4.46
5158 9117 4.084888 CGGGTCGCTCGCCAAAAC 62.085 66.667 5.44 0.00 0.00 2.43
5170 9129 2.162681 CGCCAAAACCCTCTGATTCTT 58.837 47.619 0.00 0.00 0.00 2.52
5171 9130 2.095059 CGCCAAAACCCTCTGATTCTTG 60.095 50.000 0.00 0.00 0.00 3.02
5172 9131 3.157087 GCCAAAACCCTCTGATTCTTGA 58.843 45.455 0.00 0.00 0.00 3.02
5173 9132 3.192212 GCCAAAACCCTCTGATTCTTGAG 59.808 47.826 0.00 0.00 0.00 3.02
5174 9133 4.655963 CCAAAACCCTCTGATTCTTGAGA 58.344 43.478 8.23 0.00 32.44 3.27
5175 9134 4.699257 CCAAAACCCTCTGATTCTTGAGAG 59.301 45.833 8.23 0.00 36.28 3.20
5176 9135 5.513788 CCAAAACCCTCTGATTCTTGAGAGA 60.514 44.000 0.00 0.00 38.42 3.10
5177 9136 5.832539 AAACCCTCTGATTCTTGAGAGAA 57.167 39.130 0.00 0.00 45.45 2.87
5190 9149 7.396540 TTCTTGAGAGAATTCCTTATTTGGC 57.603 36.000 0.65 0.00 36.99 4.52
5191 9150 5.888161 TCTTGAGAGAATTCCTTATTTGGCC 59.112 40.000 0.65 0.00 0.00 5.36
5192 9151 4.536765 TGAGAGAATTCCTTATTTGGCCC 58.463 43.478 0.00 0.00 0.00 5.80
5193 9152 4.230502 TGAGAGAATTCCTTATTTGGCCCT 59.769 41.667 0.00 0.00 0.00 5.19
5194 9153 5.204292 GAGAGAATTCCTTATTTGGCCCTT 58.796 41.667 0.00 0.00 0.00 3.95
5195 9154 5.593786 AGAGAATTCCTTATTTGGCCCTTT 58.406 37.500 0.00 0.00 0.00 3.11
5196 9155 5.658634 AGAGAATTCCTTATTTGGCCCTTTC 59.341 40.000 0.00 0.00 0.00 2.62
5197 9156 5.593786 AGAATTCCTTATTTGGCCCTTTCT 58.406 37.500 0.00 0.00 0.00 2.52
5198 9157 6.025539 AGAATTCCTTATTTGGCCCTTTCTT 58.974 36.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.134804 GGAATACCCAGTGCACTATGACT 59.865 47.826 21.20 2.43 34.14 3.41
1 2 3.467803 GGAATACCCAGTGCACTATGAC 58.532 50.000 21.20 7.51 34.14 3.06
2 3 3.838244 GGAATACCCAGTGCACTATGA 57.162 47.619 21.20 5.69 34.14 2.15
15 16 2.525105 TTGGCCAAAGAGGGAATACC 57.475 50.000 17.98 0.00 38.09 2.73
16 17 6.731292 ATAAATTGGCCAAAGAGGGAATAC 57.269 37.500 24.71 0.00 38.09 1.89
17 18 7.747809 AAATAAATTGGCCAAAGAGGGAATA 57.252 32.000 24.71 7.24 38.09 1.75
18 19 6.641161 AAATAAATTGGCCAAAGAGGGAAT 57.359 33.333 24.71 6.63 38.09 3.01
19 20 6.446909 AAAATAAATTGGCCAAAGAGGGAA 57.553 33.333 24.71 4.39 38.09 3.97
20 21 6.237154 CAAAAATAAATTGGCCAAAGAGGGA 58.763 36.000 24.71 5.29 38.09 4.20
21 22 5.106197 GCAAAAATAAATTGGCCAAAGAGGG 60.106 40.000 24.71 7.29 38.09 4.30
22 23 5.706833 AGCAAAAATAAATTGGCCAAAGAGG 59.293 36.000 24.71 6.52 41.84 3.69
23 24 6.806388 AGCAAAAATAAATTGGCCAAAGAG 57.194 33.333 24.71 6.25 0.00 2.85
24 25 7.284034 TCAAAGCAAAAATAAATTGGCCAAAGA 59.716 29.630 24.71 11.14 0.00 2.52
25 26 7.379262 GTCAAAGCAAAAATAAATTGGCCAAAG 59.621 33.333 24.71 5.21 0.00 2.77
26 27 7.067981 AGTCAAAGCAAAAATAAATTGGCCAAA 59.932 29.630 24.71 6.52 0.00 3.28
27 28 6.545298 AGTCAAAGCAAAAATAAATTGGCCAA 59.455 30.769 23.00 23.00 0.00 4.52
28 29 6.060788 AGTCAAAGCAAAAATAAATTGGCCA 58.939 32.000 0.00 0.00 0.00 5.36
29 30 6.558771 AGTCAAAGCAAAAATAAATTGGCC 57.441 33.333 0.00 0.00 0.00 5.36
30 31 6.298853 CGAGTCAAAGCAAAAATAAATTGGC 58.701 36.000 0.00 0.00 0.00 4.52
31 32 6.073873 TGCGAGTCAAAGCAAAAATAAATTGG 60.074 34.615 0.00 0.00 40.78 3.16
32 33 6.875753 TGCGAGTCAAAGCAAAAATAAATTG 58.124 32.000 0.00 0.00 40.78 2.32
46 47 5.178623 CACCAACTATACTTTGCGAGTCAAA 59.821 40.000 0.00 0.00 42.01 2.69
47 48 4.688879 CACCAACTATACTTTGCGAGTCAA 59.311 41.667 0.00 0.00 39.86 3.18
48 49 4.242475 CACCAACTATACTTTGCGAGTCA 58.758 43.478 0.00 0.00 39.86 3.41
49 50 4.243270 ACACCAACTATACTTTGCGAGTC 58.757 43.478 0.00 0.00 39.86 3.36
50 51 4.267349 ACACCAACTATACTTTGCGAGT 57.733 40.909 0.00 0.00 42.55 4.18
51 52 5.291128 CCTTACACCAACTATACTTTGCGAG 59.709 44.000 0.00 0.00 0.00 5.03
52 53 5.047164 TCCTTACACCAACTATACTTTGCGA 60.047 40.000 0.00 0.00 0.00 5.10
53 54 5.172934 TCCTTACACCAACTATACTTTGCG 58.827 41.667 0.00 0.00 0.00 4.85
54 55 6.428771 TGTTCCTTACACCAACTATACTTTGC 59.571 38.462 0.00 0.00 0.00 3.68
55 56 7.972832 TGTTCCTTACACCAACTATACTTTG 57.027 36.000 0.00 0.00 0.00 2.77
56 57 8.983702 TTTGTTCCTTACACCAACTATACTTT 57.016 30.769 0.00 0.00 36.21 2.66
61 62 8.520351 GCTTTATTTGTTCCTTACACCAACTAT 58.480 33.333 0.00 0.00 36.21 2.12
62 63 7.722285 AGCTTTATTTGTTCCTTACACCAACTA 59.278 33.333 0.00 0.00 36.21 2.24
63 64 6.549736 AGCTTTATTTGTTCCTTACACCAACT 59.450 34.615 0.00 0.00 36.21 3.16
64 65 6.745116 AGCTTTATTTGTTCCTTACACCAAC 58.255 36.000 0.00 0.00 36.21 3.77
65 66 6.969993 AGCTTTATTTGTTCCTTACACCAA 57.030 33.333 0.00 0.00 36.21 3.67
66 67 8.466617 TTTAGCTTTATTTGTTCCTTACACCA 57.533 30.769 0.00 0.00 36.21 4.17
67 68 9.406828 CTTTTAGCTTTATTTGTTCCTTACACC 57.593 33.333 0.00 0.00 36.21 4.16
68 69 9.406828 CCTTTTAGCTTTATTTGTTCCTTACAC 57.593 33.333 0.00 0.00 36.21 2.90
69 70 9.138596 ACCTTTTAGCTTTATTTGTTCCTTACA 57.861 29.630 0.00 0.00 34.12 2.41
70 71 9.406828 CACCTTTTAGCTTTATTTGTTCCTTAC 57.593 33.333 0.00 0.00 0.00 2.34
71 72 8.581578 CCACCTTTTAGCTTTATTTGTTCCTTA 58.418 33.333 0.00 0.00 0.00 2.69
72 73 7.070696 ACCACCTTTTAGCTTTATTTGTTCCTT 59.929 33.333 0.00 0.00 0.00 3.36
73 74 6.553476 ACCACCTTTTAGCTTTATTTGTTCCT 59.447 34.615 0.00 0.00 0.00 3.36
74 75 6.755206 ACCACCTTTTAGCTTTATTTGTTCC 58.245 36.000 0.00 0.00 0.00 3.62
75 76 7.658261 AGACCACCTTTTAGCTTTATTTGTTC 58.342 34.615 0.00 0.00 0.00 3.18
76 77 7.597288 AGACCACCTTTTAGCTTTATTTGTT 57.403 32.000 0.00 0.00 0.00 2.83
77 78 7.942894 ACTAGACCACCTTTTAGCTTTATTTGT 59.057 33.333 0.00 0.00 0.00 2.83
78 79 8.336801 ACTAGACCACCTTTTAGCTTTATTTG 57.663 34.615 0.00 0.00 0.00 2.32
80 81 9.668497 CTTACTAGACCACCTTTTAGCTTTATT 57.332 33.333 0.00 0.00 0.00 1.40
81 82 9.043548 TCTTACTAGACCACCTTTTAGCTTTAT 57.956 33.333 0.00 0.00 0.00 1.40
82 83 8.426569 TCTTACTAGACCACCTTTTAGCTTTA 57.573 34.615 0.00 0.00 0.00 1.85
83 84 7.312415 TCTTACTAGACCACCTTTTAGCTTT 57.688 36.000 0.00 0.00 0.00 3.51
84 85 6.930068 TCTTACTAGACCACCTTTTAGCTT 57.070 37.500 0.00 0.00 0.00 3.74
85 86 8.605325 TTATCTTACTAGACCACCTTTTAGCT 57.395 34.615 0.00 0.00 31.99 3.32
86 87 9.833917 AATTATCTTACTAGACCACCTTTTAGC 57.166 33.333 0.00 0.00 31.99 3.09
89 90 9.668497 GACAATTATCTTACTAGACCACCTTTT 57.332 33.333 0.00 0.00 31.99 2.27
90 91 8.265764 GGACAATTATCTTACTAGACCACCTTT 58.734 37.037 0.00 0.00 31.99 3.11
91 92 7.147532 GGGACAATTATCTTACTAGACCACCTT 60.148 40.741 0.00 0.00 31.99 3.50
92 93 6.326843 GGGACAATTATCTTACTAGACCACCT 59.673 42.308 0.00 0.00 31.99 4.00
93 94 6.099269 TGGGACAATTATCTTACTAGACCACC 59.901 42.308 0.00 0.00 31.92 4.61
94 95 7.120923 TGGGACAATTATCTTACTAGACCAC 57.879 40.000 0.00 0.00 31.92 4.16
113 114 3.209410 CTGACAATAAGGCTCATGGGAC 58.791 50.000 0.00 0.00 0.00 4.46
114 115 2.846206 ACTGACAATAAGGCTCATGGGA 59.154 45.455 0.00 0.00 0.00 4.37
115 116 3.287867 ACTGACAATAAGGCTCATGGG 57.712 47.619 0.00 0.00 0.00 4.00
116 117 6.017605 GTGATTACTGACAATAAGGCTCATGG 60.018 42.308 0.00 0.00 0.00 3.66
117 118 6.539826 TGTGATTACTGACAATAAGGCTCATG 59.460 38.462 0.00 0.00 0.00 3.07
118 119 6.653020 TGTGATTACTGACAATAAGGCTCAT 58.347 36.000 0.00 0.00 0.00 2.90
119 120 6.048732 TGTGATTACTGACAATAAGGCTCA 57.951 37.500 0.00 0.00 0.00 4.26
120 121 7.171678 GGTATGTGATTACTGACAATAAGGCTC 59.828 40.741 0.00 0.00 0.00 4.70
121 122 6.992715 GGTATGTGATTACTGACAATAAGGCT 59.007 38.462 0.00 0.00 0.00 4.58
122 123 6.765989 TGGTATGTGATTACTGACAATAAGGC 59.234 38.462 0.00 0.00 0.00 4.35
123 124 8.731275 TTGGTATGTGATTACTGACAATAAGG 57.269 34.615 0.00 0.00 0.00 2.69
124 125 9.599866 TCTTGGTATGTGATTACTGACAATAAG 57.400 33.333 0.00 0.00 0.00 1.73
125 126 9.952030 TTCTTGGTATGTGATTACTGACAATAA 57.048 29.630 0.00 0.00 0.00 1.40
126 127 9.952030 TTTCTTGGTATGTGATTACTGACAATA 57.048 29.630 0.00 0.00 0.00 1.90
127 128 8.862325 TTTCTTGGTATGTGATTACTGACAAT 57.138 30.769 0.00 0.00 0.00 2.71
128 129 8.862325 ATTTCTTGGTATGTGATTACTGACAA 57.138 30.769 0.00 0.00 0.00 3.18
129 130 8.100164 TGATTTCTTGGTATGTGATTACTGACA 58.900 33.333 0.00 0.00 0.00 3.58
130 131 8.492673 TGATTTCTTGGTATGTGATTACTGAC 57.507 34.615 0.00 0.00 0.00 3.51
131 132 8.321353 ACTGATTTCTTGGTATGTGATTACTGA 58.679 33.333 0.00 0.00 0.00 3.41
132 133 8.393366 CACTGATTTCTTGGTATGTGATTACTG 58.607 37.037 0.00 0.00 0.00 2.74
133 134 8.103305 ACACTGATTTCTTGGTATGTGATTACT 58.897 33.333 0.00 0.00 0.00 2.24
134 135 8.268850 ACACTGATTTCTTGGTATGTGATTAC 57.731 34.615 0.00 0.00 0.00 1.89
135 136 8.862325 AACACTGATTTCTTGGTATGTGATTA 57.138 30.769 0.00 0.00 0.00 1.75
136 137 7.448161 TGAACACTGATTTCTTGGTATGTGATT 59.552 33.333 0.00 0.00 0.00 2.57
137 138 6.942005 TGAACACTGATTTCTTGGTATGTGAT 59.058 34.615 0.00 0.00 0.00 3.06
138 139 6.295249 TGAACACTGATTTCTTGGTATGTGA 58.705 36.000 0.00 0.00 0.00 3.58
139 140 6.558771 TGAACACTGATTTCTTGGTATGTG 57.441 37.500 0.00 0.00 0.00 3.21
140 141 7.765695 ATTGAACACTGATTTCTTGGTATGT 57.234 32.000 0.00 0.00 0.00 2.29
141 142 9.480053 AAAATTGAACACTGATTTCTTGGTATG 57.520 29.630 0.00 0.00 0.00 2.39
185 186 6.185852 TGTATGAATCTGCAACAATGTCAG 57.814 37.500 0.00 0.00 34.22 3.51
303 304 7.527084 TGTGGTTGCATAAGTTTTGTAAAAC 57.473 32.000 11.28 11.28 46.54 2.43
341 342 5.929415 TCGTGTAGCATGTGTTCAATTCTAA 59.071 36.000 0.00 0.00 0.00 2.10
445 446 3.554934 TCACAAGACTGCAGATTTTGGT 58.445 40.909 23.35 7.66 0.00 3.67
477 492 4.363999 ACAGCTATCACAAGACTATTCGC 58.636 43.478 0.00 0.00 0.00 4.70
549 568 3.005050 CCCGTGTGTAGTTGTTAGAGTGA 59.995 47.826 0.00 0.00 0.00 3.41
567 586 5.416271 TGATTCTTAGTCTTTAAGCCCGT 57.584 39.130 0.00 0.00 0.00 5.28
568 587 6.106673 TCTTGATTCTTAGTCTTTAAGCCCG 58.893 40.000 0.00 0.00 0.00 6.13
569 588 7.923414 TTCTTGATTCTTAGTCTTTAAGCCC 57.077 36.000 0.00 0.00 0.00 5.19
628 647 9.179909 TCTAAAGTCCAAACTAACATTTTGACA 57.820 29.630 5.57 0.00 36.93 3.58
636 655 8.974060 AAGACAATCTAAAGTCCAAACTAACA 57.026 30.769 0.00 0.00 33.48 2.41
641 660 9.803315 AAAAAGAAGACAATCTAAAGTCCAAAC 57.197 29.630 0.00 0.00 35.38 2.93
685 704 3.864243 TGCCTTAAAATATGACGTCGGT 58.136 40.909 11.62 4.73 0.00 4.69
687 706 5.432157 GTCATGCCTTAAAATATGACGTCG 58.568 41.667 11.62 0.00 39.75 5.12
691 710 9.585099 TTGATTTGTCATGCCTTAAAATATGAC 57.415 29.630 14.18 14.18 45.88 3.06
739 761 9.884465 GACTAAATTTGACATTATGATGCCTAC 57.116 33.333 0.00 0.00 36.72 3.18
741 763 7.255242 CCGACTAAATTTGACATTATGATGCCT 60.255 37.037 0.00 0.00 36.72 4.75
747 769 6.907212 GCTCACCGACTAAATTTGACATTATG 59.093 38.462 0.00 0.00 0.00 1.90
749 771 6.170506 AGCTCACCGACTAAATTTGACATTA 58.829 36.000 0.00 0.00 0.00 1.90
750 772 5.003804 AGCTCACCGACTAAATTTGACATT 58.996 37.500 0.00 0.00 0.00 2.71
754 776 4.021456 TCAGAGCTCACCGACTAAATTTGA 60.021 41.667 17.77 2.83 0.00 2.69
765 787 3.372206 CCTTTTATTGTCAGAGCTCACCG 59.628 47.826 17.77 3.85 0.00 4.94
768 790 5.702670 CAGTTCCTTTTATTGTCAGAGCTCA 59.297 40.000 17.77 0.00 0.00 4.26
786 818 4.089923 GCATGTTAAATTTGTCGCAGTTCC 59.910 41.667 0.00 0.00 0.00 3.62
803 835 5.464168 GCAAGTTTAGTTGATGAGCATGTT 58.536 37.500 1.56 0.00 0.00 2.71
852 885 8.810652 TTTTTAGCATAGCGAATCAAAAGTTT 57.189 26.923 0.00 0.00 0.00 2.66
853 886 8.986477 ATTTTTAGCATAGCGAATCAAAAGTT 57.014 26.923 0.00 0.00 0.00 2.66
854 887 8.462016 AGATTTTTAGCATAGCGAATCAAAAGT 58.538 29.630 0.00 0.00 0.00 2.66
855 888 8.740369 CAGATTTTTAGCATAGCGAATCAAAAG 58.260 33.333 0.00 0.00 0.00 2.27
861 894 6.925610 TGTCAGATTTTTAGCATAGCGAAT 57.074 33.333 0.00 0.00 0.00 3.34
864 897 6.075205 GCAAATGTCAGATTTTTAGCATAGCG 60.075 38.462 0.00 0.00 0.00 4.26
898 933 4.081642 GGCTTTTCAGAATAAAAGGACCCC 60.082 45.833 10.19 1.15 43.57 4.95
940 978 5.921408 ACCGATTTTTCGCATCTAGAGTATC 59.079 40.000 0.00 0.00 0.00 2.24
941 979 5.844004 ACCGATTTTTCGCATCTAGAGTAT 58.156 37.500 0.00 0.00 0.00 2.12
942 980 5.067413 AGACCGATTTTTCGCATCTAGAGTA 59.933 40.000 0.00 0.00 0.00 2.59
943 981 4.113354 GACCGATTTTTCGCATCTAGAGT 58.887 43.478 0.00 0.00 0.00 3.24
944 982 4.363999 AGACCGATTTTTCGCATCTAGAG 58.636 43.478 0.00 0.00 0.00 2.43
974 1027 1.198713 ATCACCAGCCGAGATCAACT 58.801 50.000 0.00 0.00 0.00 3.16
1106 1159 0.035915 GGTGGAGAAGAGGAAGTGCC 60.036 60.000 0.00 0.00 0.00 5.01
1481 1554 1.103398 CCGATCCAGACATTTGGCCC 61.103 60.000 0.00 0.00 38.16 5.80
1644 2002 6.490040 CCCACAAGATTAGGAAACAAAAGAGA 59.510 38.462 0.00 0.00 0.00 3.10
1645 2003 6.265422 ACCCACAAGATTAGGAAACAAAAGAG 59.735 38.462 0.00 0.00 0.00 2.85
1765 2124 0.102120 TGCGGTGAAAAGGCAAACTG 59.898 50.000 0.00 0.00 33.01 3.16
1782 2141 1.987770 CCAACAGACGAAATGCATTGC 59.012 47.619 13.82 10.51 0.00 3.56
1819 2179 9.155975 GAAGATGTACTGCAATTACTATATGGG 57.844 37.037 6.68 0.00 0.00 4.00
1820 2180 9.935241 AGAAGATGTACTGCAATTACTATATGG 57.065 33.333 6.68 0.00 0.00 2.74
1839 2199 8.074370 CACAATATCAAATAGGTGCAGAAGATG 58.926 37.037 0.00 0.00 0.00 2.90
1845 2205 5.762825 AGCACAATATCAAATAGGTGCAG 57.237 39.130 19.75 1.91 45.11 4.41
1864 2224 6.058183 GCCTAATTCAAGAGAAAGGATAGCA 58.942 40.000 0.00 0.00 34.87 3.49
1915 2275 6.417930 GGTTGTTTGCTCTTGTTATCTTTGAC 59.582 38.462 0.00 0.00 0.00 3.18
2024 2384 1.510480 GAGTAAGGATGGCATGCCGC 61.510 60.000 30.87 24.17 39.42 6.53
2025 2385 0.886490 GGAGTAAGGATGGCATGCCG 60.886 60.000 30.87 0.00 39.42 5.69
2369 2850 7.225931 GGTGTCTTTGTACTTGTAAGATGTTCA 59.774 37.037 0.00 0.00 31.25 3.18
2401 2890 2.279659 CCGCGCTTAAATGCTGATTTTG 59.720 45.455 5.56 0.00 33.63 2.44
2402 2891 2.094752 ACCGCGCTTAAATGCTGATTTT 60.095 40.909 5.56 0.00 33.63 1.82
2419 2908 2.431260 CCAAGCATGTGCAACCGC 60.431 61.111 7.83 0.00 45.16 5.68
2445 2934 1.734465 GCATGTAAGTGTCAGGCTGTC 59.266 52.381 15.27 9.82 39.12 3.51
2493 2982 5.352569 CCTTCAAAACACGATCAGAAGCTAT 59.647 40.000 0.00 0.00 33.10 2.97
2495 2984 3.499918 CCTTCAAAACACGATCAGAAGCT 59.500 43.478 0.00 0.00 33.10 3.74
2496 2985 3.251004 ACCTTCAAAACACGATCAGAAGC 59.749 43.478 0.00 0.00 33.10 3.86
2502 2991 4.201685 CGGTATGACCTTCAAAACACGATC 60.202 45.833 0.00 0.00 35.66 3.69
2506 2995 3.058501 CACCGGTATGACCTTCAAAACAC 60.059 47.826 6.87 0.00 35.66 3.32
2518 3007 2.799017 AGTGTACTGTCACCGGTATGA 58.201 47.619 6.87 0.00 38.91 2.15
2524 3013 4.552355 TCAATGTTAGTGTACTGTCACCG 58.448 43.478 0.00 0.00 38.91 4.94
2734 3231 3.505680 TGTAACACCATTCACATTGCCTC 59.494 43.478 0.00 0.00 0.00 4.70
2783 3287 7.033185 GTGATTGTTCCATTACCCATGTTAAC 58.967 38.462 0.00 0.00 31.70 2.01
2800 3304 8.039603 TGCTCATTTAATCGTTAGTGATTGTT 57.960 30.769 0.00 0.00 38.92 2.83
2801 3305 7.609760 TGCTCATTTAATCGTTAGTGATTGT 57.390 32.000 0.00 0.00 38.92 2.71
2812 3515 9.994432 AGATTACTTCTTTTGCTCATTTAATCG 57.006 29.630 0.00 0.00 31.58 3.34
2826 3529 7.718314 AGAAAACGGTGGTTAGATTACTTCTTT 59.282 33.333 0.00 0.00 34.62 2.52
2883 3601 2.507339 ATGGTTTCGCTGGTTTGTTG 57.493 45.000 0.00 0.00 0.00 3.33
2895 3613 7.094848 CCCCAATTGTTTGTGAATAATGGTTTC 60.095 37.037 4.43 0.00 28.57 2.78
2908 3626 2.618442 CAAGTGCCCCAATTGTTTGT 57.382 45.000 4.43 0.00 35.19 2.83
2953 4209 8.103948 ACAGACTTGAAGGAAATCAGTTAATG 57.896 34.615 0.00 0.00 0.00 1.90
3007 4263 6.522054 CAAACTAGAGACCAGAAAAGGTGTA 58.478 40.000 0.00 0.00 43.38 2.90
3010 4266 4.103311 AGCAAACTAGAGACCAGAAAAGGT 59.897 41.667 0.00 0.00 46.82 3.50
3011 4267 4.646572 AGCAAACTAGAGACCAGAAAAGG 58.353 43.478 0.00 0.00 0.00 3.11
3022 4278 5.971763 ACTGATGAAGGTAGCAAACTAGAG 58.028 41.667 0.00 0.00 0.00 2.43
3059 4315 7.336679 TGACTACTTGCATGCAACTAAACATAT 59.663 33.333 28.80 7.74 0.00 1.78
3144 4401 1.080298 GAAGCATGCCCTTGTGTGC 60.080 57.895 15.66 0.00 37.84 4.57
3203 4460 7.337942 GTCTGACAAGTGGATGAAGGATATTTT 59.662 37.037 2.24 0.00 0.00 1.82
3259 4523 3.263425 TCTGGTGGGAATTACAGTCCTTC 59.737 47.826 0.00 0.00 35.33 3.46
3267 4531 3.004752 AGCATGTCTGGTGGGAATTAC 57.995 47.619 0.00 0.00 0.00 1.89
3311 4575 4.531332 GTGCTGTGTGAGAGATTTCAAAC 58.469 43.478 0.00 0.00 36.13 2.93
3317 4581 1.341209 TGACGTGCTGTGTGAGAGATT 59.659 47.619 0.00 0.00 0.00 2.40
3319 4583 0.030773 GTGACGTGCTGTGTGAGAGA 59.969 55.000 0.00 0.00 0.00 3.10
3325 4589 0.035317 ATGATGGTGACGTGCTGTGT 59.965 50.000 0.00 0.00 0.00 3.72
3334 4627 2.887152 GGCATTCCCTAATGATGGTGAC 59.113 50.000 2.38 0.00 44.50 3.67
3361 4917 4.142902 CGAAACAGGATAAAGATGCAACGT 60.143 41.667 0.00 0.00 0.00 3.99
3538 5104 7.189693 TCATTCTTGTGACAAAGTGTACATC 57.810 36.000 0.00 0.00 0.00 3.06
4008 7418 2.811873 GCCCTCTCTTGTTGAAGAAGCA 60.812 50.000 0.00 0.00 37.77 3.91
4037 7449 6.882678 ACTGGGTACGCTTATAAGAAACAATT 59.117 34.615 16.85 0.00 0.00 2.32
4116 7539 9.330063 TCCATAATACATCAAGAACTGACATTC 57.670 33.333 0.00 0.00 36.69 2.67
4121 7544 6.591935 GGGTCCATAATACATCAAGAACTGA 58.408 40.000 0.00 0.00 38.81 3.41
4314 7767 4.952071 TCTCCAGATCATCATTCTCCAC 57.048 45.455 0.00 0.00 0.00 4.02
4349 7803 8.358582 AGAATTTGATACTGAAGAAGGCAAAT 57.641 30.769 0.00 0.00 37.61 2.32
4355 7809 9.658799 TGTTCCTAGAATTTGATACTGAAGAAG 57.341 33.333 0.00 0.00 0.00 2.85
4555 8511 1.666189 GTATGAGGCGACCTTTGAAGC 59.334 52.381 0.00 0.00 31.76 3.86
4614 8570 5.886715 TTTGCTTCATGTTTGACGAATTG 57.113 34.783 0.00 0.00 0.00 2.32
4698 8654 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
4751 8707 7.133133 AGAGGGAGAAACACTAGTGTAAAAA 57.867 36.000 28.13 0.00 44.13 1.94
4752 8708 6.325545 TGAGAGGGAGAAACACTAGTGTAAAA 59.674 38.462 28.13 2.37 44.13 1.52
4753 8709 5.836898 TGAGAGGGAGAAACACTAGTGTAAA 59.163 40.000 28.13 1.67 44.13 2.01
4754 8710 5.391256 TGAGAGGGAGAAACACTAGTGTAA 58.609 41.667 28.13 0.00 44.13 2.41
4755 8711 4.994282 TGAGAGGGAGAAACACTAGTGTA 58.006 43.478 28.13 5.79 44.13 2.90
4757 8713 6.531503 TTATGAGAGGGAGAAACACTAGTG 57.468 41.667 21.44 21.44 29.26 2.74
4761 8717 9.661954 TCTTATATTATGAGAGGGAGAAACACT 57.338 33.333 0.00 0.00 33.40 3.55
4762 8718 9.921637 CTCTTATATTATGAGAGGGAGAAACAC 57.078 37.037 14.69 0.00 38.83 3.32
4763 8719 9.661954 ACTCTTATATTATGAGAGGGAGAAACA 57.338 33.333 22.46 0.00 44.65 2.83
4764 8720 9.921637 CACTCTTATATTATGAGAGGGAGAAAC 57.078 37.037 22.46 0.00 46.20 2.78
4765 8721 9.661954 ACACTCTTATATTATGAGAGGGAGAAA 57.338 33.333 26.16 0.00 46.20 2.52
4766 8722 9.661954 AACACTCTTATATTATGAGAGGGAGAA 57.338 33.333 26.16 0.00 46.20 2.87
4767 8723 9.661954 AAACACTCTTATATTATGAGAGGGAGA 57.338 33.333 26.16 2.84 46.20 3.71
4789 8745 5.242434 AGTGTACTGTCAAGTGTCAAAACA 58.758 37.500 0.00 0.00 37.19 2.83
4790 8746 5.796350 AGTGTACTGTCAAGTGTCAAAAC 57.204 39.130 0.00 0.00 37.19 2.43
4791 8747 6.533723 CACTAGTGTACTGTCAAGTGTCAAAA 59.466 38.462 15.06 0.00 37.19 2.44
4792 8748 6.040247 CACTAGTGTACTGTCAAGTGTCAAA 58.960 40.000 15.06 0.00 37.19 2.69
4793 8749 5.126545 ACACTAGTGTACTGTCAAGTGTCAA 59.873 40.000 26.91 0.00 42.81 3.18
4794 8750 4.643334 ACACTAGTGTACTGTCAAGTGTCA 59.357 41.667 26.91 0.00 42.81 3.58
4795 8751 5.184340 ACACTAGTGTACTGTCAAGTGTC 57.816 43.478 26.91 0.00 42.81 3.67
4796 8752 6.704289 TTACACTAGTGTACTGTCAAGTGT 57.296 37.500 30.76 17.49 44.81 3.55
4797 8753 7.997107 TTTTACACTAGTGTACTGTCAAGTG 57.003 36.000 30.76 3.55 44.81 3.16
4821 8777 9.471702 CCTCCATTCCATAATATAAGAGCATTT 57.528 33.333 0.00 0.00 0.00 2.32
4822 8778 8.057623 CCCTCCATTCCATAATATAAGAGCATT 58.942 37.037 0.00 0.00 0.00 3.56
4823 8779 7.407033 TCCCTCCATTCCATAATATAAGAGCAT 59.593 37.037 0.00 0.00 0.00 3.79
4824 8780 6.735229 TCCCTCCATTCCATAATATAAGAGCA 59.265 38.462 0.00 0.00 0.00 4.26
4825 8781 7.092668 ACTCCCTCCATTCCATAATATAAGAGC 60.093 40.741 0.00 0.00 0.00 4.09
4826 8782 8.386012 ACTCCCTCCATTCCATAATATAAGAG 57.614 38.462 0.00 0.00 0.00 2.85
4827 8783 9.852784 TTACTCCCTCCATTCCATAATATAAGA 57.147 33.333 0.00 0.00 0.00 2.10
4836 8792 8.394040 CCTTAATAATTACTCCCTCCATTCCAT 58.606 37.037 0.00 0.00 0.00 3.41
4837 8793 7.694293 GCCTTAATAATTACTCCCTCCATTCCA 60.694 40.741 0.00 0.00 0.00 3.53
4838 8794 6.659668 GCCTTAATAATTACTCCCTCCATTCC 59.340 42.308 0.00 0.00 0.00 3.01
4839 8795 6.659668 GGCCTTAATAATTACTCCCTCCATTC 59.340 42.308 0.00 0.00 0.00 2.67
4840 8796 6.335580 AGGCCTTAATAATTACTCCCTCCATT 59.664 38.462 0.00 0.00 0.00 3.16
4841 8797 5.857845 AGGCCTTAATAATTACTCCCTCCAT 59.142 40.000 0.00 0.00 0.00 3.41
4842 8798 5.232347 AGGCCTTAATAATTACTCCCTCCA 58.768 41.667 0.00 0.00 0.00 3.86
4843 8799 5.548446 AGAGGCCTTAATAATTACTCCCTCC 59.452 44.000 6.77 0.00 37.61 4.30
4844 8800 6.689663 AGAGGCCTTAATAATTACTCCCTC 57.310 41.667 6.77 0.00 37.26 4.30
4845 8801 7.128883 TCAAAGAGGCCTTAATAATTACTCCCT 59.871 37.037 6.77 0.00 31.15 4.20
4846 8802 7.287810 TCAAAGAGGCCTTAATAATTACTCCC 58.712 38.462 6.77 0.00 31.15 4.30
4847 8803 8.926092 ATCAAAGAGGCCTTAATAATTACTCC 57.074 34.615 6.77 0.00 31.15 3.85
4849 8805 9.920946 TGAATCAAAGAGGCCTTAATAATTACT 57.079 29.630 6.77 0.00 31.15 2.24
4850 8806 9.952188 GTGAATCAAAGAGGCCTTAATAATTAC 57.048 33.333 6.77 0.00 31.15 1.89
4857 8813 4.042809 TCCTGTGAATCAAAGAGGCCTTAA 59.957 41.667 6.77 0.00 31.15 1.85
4905 8861 9.151177 AGCATGACAATCCAATCCTATATTTTT 57.849 29.630 0.00 0.00 0.00 1.94
4945 8901 2.986479 GCTTTAAGCACCGGTCATTTTG 59.014 45.455 12.54 0.00 41.89 2.44
4947 8903 1.544246 GGCTTTAAGCACCGGTCATTT 59.456 47.619 19.10 1.54 44.75 2.32
4948 8904 1.173913 GGCTTTAAGCACCGGTCATT 58.826 50.000 19.10 4.87 44.75 2.57
4964 8920 2.440817 CCCGAACCTATTCCGGGCT 61.441 63.158 0.00 0.00 39.88 5.19
4974 8930 0.185175 AGTTCAAAAGCCCCGAACCT 59.815 50.000 0.00 0.00 39.89 3.50
4978 8934 1.228429 CCCAGTTCAAAAGCCCCGA 60.228 57.895 0.00 0.00 0.00 5.14
4979 8935 1.530655 ACCCAGTTCAAAAGCCCCG 60.531 57.895 0.00 0.00 0.00 5.73
4980 8936 1.471829 CCACCCAGTTCAAAAGCCCC 61.472 60.000 0.00 0.00 0.00 5.80
4981 8937 0.759060 ACCACCCAGTTCAAAAGCCC 60.759 55.000 0.00 0.00 0.00 5.19
4982 8938 1.068588 GAACCACCCAGTTCAAAAGCC 59.931 52.381 0.00 0.00 44.55 4.35
4983 8939 2.509052 GAACCACCCAGTTCAAAAGC 57.491 50.000 0.00 0.00 44.55 3.51
4989 8945 2.104963 ACAGAGAAGAACCACCCAGTTC 59.895 50.000 0.00 0.00 45.34 3.01
4990 8946 2.127708 ACAGAGAAGAACCACCCAGTT 58.872 47.619 0.00 0.00 0.00 3.16
4991 8947 1.807814 ACAGAGAAGAACCACCCAGT 58.192 50.000 0.00 0.00 0.00 4.00
4992 8948 2.938956 AACAGAGAAGAACCACCCAG 57.061 50.000 0.00 0.00 0.00 4.45
4993 8949 2.507886 TGAAACAGAGAAGAACCACCCA 59.492 45.455 0.00 0.00 0.00 4.51
4994 8950 3.208747 TGAAACAGAGAAGAACCACCC 57.791 47.619 0.00 0.00 0.00 4.61
4995 8951 5.340803 GTTTTGAAACAGAGAAGAACCACC 58.659 41.667 1.90 0.00 38.74 4.61
4996 8952 5.028375 CGTTTTGAAACAGAGAAGAACCAC 58.972 41.667 7.32 0.00 38.81 4.16
4997 8953 4.095782 CCGTTTTGAAACAGAGAAGAACCA 59.904 41.667 7.32 0.00 38.81 3.67
4998 8954 4.095932 ACCGTTTTGAAACAGAGAAGAACC 59.904 41.667 7.32 0.00 38.81 3.62
5026 8982 5.624738 CGTTAGAGTGTGAAATAGGCCTTCT 60.625 44.000 12.58 6.83 0.00 2.85
5050 9009 8.194769 TGTTTGAAAGAAGGAAGAACATAAACC 58.805 33.333 0.00 0.00 0.00 3.27
5069 9028 3.020984 GAGTGAAACCACCCTGTTTGAA 58.979 45.455 0.00 0.00 38.51 2.69
5070 9029 2.025793 TGAGTGAAACCACCCTGTTTGA 60.026 45.455 0.00 0.00 38.51 2.69
5078 9037 4.430007 GAAAACCTTTGAGTGAAACCACC 58.570 43.478 0.00 0.00 37.80 4.61
5080 9039 3.759618 ACGAAAACCTTTGAGTGAAACCA 59.240 39.130 0.00 0.00 37.80 3.67
5081 9040 4.365899 ACGAAAACCTTTGAGTGAAACC 57.634 40.909 0.00 0.00 37.80 3.27
5087 9046 4.690184 AACGAAACGAAAACCTTTGAGT 57.310 36.364 0.00 0.00 0.00 3.41
5091 9050 3.444742 AGGGAAACGAAACGAAAACCTTT 59.555 39.130 0.00 0.00 0.00 3.11
5121 9080 2.662791 CGAAGCGTCTTGTGTTTGATGG 60.663 50.000 0.00 0.00 0.00 3.51
5133 9092 4.117661 GAGCGACCCGAAGCGTCT 62.118 66.667 0.00 0.00 38.61 4.18
5146 9105 2.358737 AGAGGGTTTTGGCGAGCG 60.359 61.111 0.00 0.00 0.00 5.03
5170 9129 4.230502 AGGGCCAAATAAGGAATTCTCTCA 59.769 41.667 6.18 0.00 0.00 3.27
5171 9130 4.797743 AGGGCCAAATAAGGAATTCTCTC 58.202 43.478 6.18 0.00 0.00 3.20
5172 9131 4.888626 AGGGCCAAATAAGGAATTCTCT 57.111 40.909 6.18 0.00 0.00 3.10
5173 9132 5.658634 AGAAAGGGCCAAATAAGGAATTCTC 59.341 40.000 6.18 0.00 0.00 2.87
5174 9133 5.593786 AGAAAGGGCCAAATAAGGAATTCT 58.406 37.500 6.18 0.00 0.00 2.40
5175 9134 5.939764 AGAAAGGGCCAAATAAGGAATTC 57.060 39.130 6.18 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.