Multiple sequence alignment - TraesCS7D01G193200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G193200 chr7D 100.000 2996 0 0 1 2996 149529057 149526062 0.000000e+00 5533.0
1 TraesCS7D01G193200 chr7D 89.263 1695 88 34 385 2010 148296812 148298481 0.000000e+00 2036.0
2 TraesCS7D01G193200 chr7D 93.689 713 35 1 2284 2996 149520382 149519680 0.000000e+00 1059.0
3 TraesCS7D01G193200 chr7D 84.615 403 32 11 2011 2383 148298517 148298919 1.010000e-99 374.0
4 TraesCS7D01G193200 chr7B 92.284 1607 86 18 432 2010 111367506 111369102 0.000000e+00 2246.0
5 TraesCS7D01G193200 chr7B 83.600 939 112 15 2086 2993 111370775 111371702 0.000000e+00 843.0
6 TraesCS7D01G193200 chr7B 87.029 239 29 2 132 368 313690788 313691026 4.920000e-68 268.0
7 TraesCS7D01G193200 chr7B 86.134 238 30 3 130 365 461743169 461743405 1.380000e-63 254.0
8 TraesCS7D01G193200 chr7B 95.062 81 4 0 365 445 111367408 111367488 8.720000e-26 128.0
9 TraesCS7D01G193200 chr7B 98.611 72 1 0 2011 2082 111369331 111369402 8.720000e-26 128.0
10 TraesCS7D01G193200 chr7B 81.197 117 22 0 261 377 188594051 188593935 8.840000e-16 95.3
11 TraesCS7D01G193200 chr7A 88.146 1721 88 44 385 2010 149601212 149602911 0.000000e+00 1941.0
12 TraesCS7D01G193200 chr7A 83.969 1023 114 24 2011 2996 149602947 149603956 0.000000e+00 935.0
13 TraesCS7D01G193200 chr7A 87.826 115 7 3 4 111 719474088 719473974 8.720000e-26 128.0
14 TraesCS7D01G193200 chr7A 83.898 118 12 2 1 111 186836429 186836546 4.080000e-19 106.0
15 TraesCS7D01G193200 chr7A 83.898 118 12 2 1 111 368197242 368197125 4.080000e-19 106.0
16 TraesCS7D01G193200 chr5D 79.921 757 135 14 2199 2943 403565112 403564361 9.450000e-150 540.0
17 TraesCS7D01G193200 chr5D 85.950 242 31 3 132 371 132475385 132475145 3.830000e-64 255.0
18 TraesCS7D01G193200 chr5D 79.116 249 46 6 131 375 413631632 413631878 1.850000e-37 167.0
19 TraesCS7D01G193200 chr3D 77.210 803 157 21 2199 2990 269183647 269184434 2.120000e-121 446.0
20 TraesCS7D01G193200 chr3D 77.363 804 145 28 2199 2981 525821876 525821089 2.740000e-120 442.0
21 TraesCS7D01G193200 chr3D 77.193 513 100 11 2199 2708 133273377 133272879 1.760000e-72 283.0
22 TraesCS7D01G193200 chr3D 85.714 238 33 1 132 368 297672509 297672272 1.780000e-62 250.0
23 TraesCS7D01G193200 chr3D 84.426 122 12 3 1 115 334169778 334169899 2.440000e-21 113.0
24 TraesCS7D01G193200 chr2D 77.210 803 155 22 2199 2990 3629074 3628289 7.620000e-121 444.0
25 TraesCS7D01G193200 chr2D 83.898 118 12 2 1 111 502288425 502288308 4.080000e-19 106.0
26 TraesCS7D01G193200 chr2D 76.000 225 40 11 166 384 37773571 37773787 1.470000e-18 104.0
27 TraesCS7D01G193200 chr2B 76.040 793 158 27 2199 2983 155080037 155079269 1.690000e-102 383.0
28 TraesCS7D01G193200 chr2B 82.323 396 56 12 2606 2990 718194095 718194487 6.190000e-87 331.0
29 TraesCS7D01G193200 chr2B 86.777 242 30 2 132 371 760870705 760870946 4.920000e-68 268.0
30 TraesCS7D01G193200 chr2B 85.306 245 33 3 130 371 652531767 652532011 1.780000e-62 250.0
31 TraesCS7D01G193200 chr6B 82.234 394 59 11 2606 2990 594544650 594544259 2.230000e-86 329.0
32 TraesCS7D01G193200 chr4B 74.969 807 152 29 2199 2995 265216040 265215274 2.880000e-85 326.0
33 TraesCS7D01G193200 chr1D 77.758 562 98 20 2436 2990 112478222 112477681 1.340000e-83 320.0
34 TraesCS7D01G193200 chr1D 86.475 244 30 3 132 372 462261720 462261477 6.370000e-67 265.0
35 TraesCS7D01G193200 chr1D 85.477 241 32 2 131 369 451388337 451388576 6.410000e-62 248.0
36 TraesCS7D01G193200 chr3A 76.413 513 105 8 2199 2708 408177329 408177828 2.290000e-66 263.0
37 TraesCS7D01G193200 chr3B 85.656 244 33 2 130 371 658251808 658251565 3.830000e-64 255.0
38 TraesCS7D01G193200 chr3B 83.267 251 39 3 130 378 81039921 81040170 8.360000e-56 228.0
39 TraesCS7D01G193200 chr3B 84.426 122 12 3 1 115 433578632 433578753 2.440000e-21 113.0
40 TraesCS7D01G193200 chr6D 81.518 303 53 3 2193 2493 255021384 255021083 2.310000e-61 246.0
41 TraesCS7D01G193200 chr5A 75.435 517 103 15 2199 2708 572953881 572954380 2.320000e-56 230.0
42 TraesCS7D01G193200 chr5A 74.855 517 106 15 2199 2708 572958955 572959454 2.340000e-51 213.0
43 TraesCS7D01G193200 chr4A 79.461 297 56 5 2199 2493 80028889 80028596 3.910000e-49 206.0
44 TraesCS7D01G193200 chr4A 84.956 113 11 3 5 111 615548374 615548262 3.160000e-20 110.0
45 TraesCS7D01G193200 chr1A 80.400 250 40 9 130 375 385034693 385034449 6.600000e-42 182.0
46 TraesCS7D01G193200 chr2A 85.714 119 9 4 1 111 166758368 166758250 5.250000e-23 119.0
47 TraesCS7D01G193200 chr2A 82.759 116 16 3 1 115 361019717 361019829 1.900000e-17 100.0
48 TraesCS7D01G193200 chr6A 75.299 251 54 8 132 377 376487946 376487699 2.440000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G193200 chr7D 149526062 149529057 2995 True 5533.00 5533 100.00000 1 2996 1 chr7D.!!$R2 2995
1 TraesCS7D01G193200 chr7D 148296812 148298919 2107 False 1205.00 2036 86.93900 385 2383 2 chr7D.!!$F1 1998
2 TraesCS7D01G193200 chr7D 149519680 149520382 702 True 1059.00 1059 93.68900 2284 2996 1 chr7D.!!$R1 712
3 TraesCS7D01G193200 chr7B 111367408 111371702 4294 False 836.25 2246 92.38925 365 2993 4 chr7B.!!$F3 2628
4 TraesCS7D01G193200 chr7A 149601212 149603956 2744 False 1438.00 1941 86.05750 385 2996 2 chr7A.!!$F2 2611
5 TraesCS7D01G193200 chr5D 403564361 403565112 751 True 540.00 540 79.92100 2199 2943 1 chr5D.!!$R2 744
6 TraesCS7D01G193200 chr3D 269183647 269184434 787 False 446.00 446 77.21000 2199 2990 1 chr3D.!!$F1 791
7 TraesCS7D01G193200 chr3D 525821089 525821876 787 True 442.00 442 77.36300 2199 2981 1 chr3D.!!$R3 782
8 TraesCS7D01G193200 chr2D 3628289 3629074 785 True 444.00 444 77.21000 2199 2990 1 chr2D.!!$R1 791
9 TraesCS7D01G193200 chr2B 155079269 155080037 768 True 383.00 383 76.04000 2199 2983 1 chr2B.!!$R1 784
10 TraesCS7D01G193200 chr4B 265215274 265216040 766 True 326.00 326 74.96900 2199 2995 1 chr4B.!!$R1 796
11 TraesCS7D01G193200 chr1D 112477681 112478222 541 True 320.00 320 77.75800 2436 2990 1 chr1D.!!$R1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 1029 0.035439 TCTTGCGTTCCTGATTCCCC 60.035 55.0 0.00 0.00 0.00 4.81 F
1004 1132 0.038251 AGCGAGAACTGCGACATGAA 60.038 50.0 0.00 0.00 37.44 2.57 F
1095 1223 0.101579 GCTGTAACCTCTCCGAGCTC 59.898 60.0 2.73 2.73 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2057 0.105964 AGTGCAGGCAGTCGTTGTTA 59.894 50.000 0.0 0.0 0.00 2.41 R
1909 2058 1.153168 AGTGCAGGCAGTCGTTGTT 60.153 52.632 0.0 0.0 0.00 2.83 R
2157 3909 1.831106 TGTCAGCGGTTGGATGTAGAT 59.169 47.619 0.0 0.0 32.65 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.190326 TCTCAAGAGGATGTAGTTTCTAAACA 57.810 34.615 8.21 0.00 41.30 2.83
26 27 8.816894 TCTCAAGAGGATGTAGTTTCTAAACAT 58.183 33.333 8.21 0.00 41.30 2.71
74 75 8.549338 AGCTAGTTAAATTGTCAACCTAGAAC 57.451 34.615 0.00 0.00 0.00 3.01
75 76 8.376270 AGCTAGTTAAATTGTCAACCTAGAACT 58.624 33.333 0.00 0.00 0.00 3.01
76 77 9.649167 GCTAGTTAAATTGTCAACCTAGAACTA 57.351 33.333 0.00 0.00 0.00 2.24
78 79 8.530269 AGTTAAATTGTCAACCTAGAACTACG 57.470 34.615 0.00 0.00 0.00 3.51
79 80 5.857822 AAATTGTCAACCTAGAACTACGC 57.142 39.130 0.00 0.00 0.00 4.42
80 81 4.530710 ATTGTCAACCTAGAACTACGCA 57.469 40.909 0.00 0.00 0.00 5.24
81 82 4.530710 TTGTCAACCTAGAACTACGCAT 57.469 40.909 0.00 0.00 0.00 4.73
82 83 5.648178 TTGTCAACCTAGAACTACGCATA 57.352 39.130 0.00 0.00 0.00 3.14
83 84 5.847111 TGTCAACCTAGAACTACGCATAT 57.153 39.130 0.00 0.00 0.00 1.78
84 85 5.588240 TGTCAACCTAGAACTACGCATATG 58.412 41.667 0.00 0.00 0.00 1.78
85 86 5.358725 TGTCAACCTAGAACTACGCATATGA 59.641 40.000 6.97 0.00 0.00 2.15
86 87 5.686397 GTCAACCTAGAACTACGCATATGAC 59.314 44.000 6.97 0.00 0.00 3.06
87 88 4.850347 ACCTAGAACTACGCATATGACC 57.150 45.455 6.97 0.00 0.00 4.02
88 89 4.471548 ACCTAGAACTACGCATATGACCT 58.528 43.478 6.97 0.00 0.00 3.85
89 90 5.628130 ACCTAGAACTACGCATATGACCTA 58.372 41.667 6.97 0.00 0.00 3.08
90 91 6.246919 ACCTAGAACTACGCATATGACCTAT 58.753 40.000 6.97 0.00 0.00 2.57
91 92 7.400439 ACCTAGAACTACGCATATGACCTATA 58.600 38.462 6.97 0.00 0.00 1.31
92 93 7.336427 ACCTAGAACTACGCATATGACCTATAC 59.664 40.741 6.97 0.00 0.00 1.47
93 94 7.336176 CCTAGAACTACGCATATGACCTATACA 59.664 40.741 6.97 0.00 0.00 2.29
94 95 6.910995 AGAACTACGCATATGACCTATACAC 58.089 40.000 6.97 0.00 0.00 2.90
95 96 6.715718 AGAACTACGCATATGACCTATACACT 59.284 38.462 6.97 0.00 0.00 3.55
96 97 6.255596 ACTACGCATATGACCTATACACTG 57.744 41.667 6.97 0.00 0.00 3.66
97 98 6.002082 ACTACGCATATGACCTATACACTGA 58.998 40.000 6.97 0.00 0.00 3.41
98 99 5.378292 ACGCATATGACCTATACACTGAG 57.622 43.478 6.97 0.00 0.00 3.35
99 100 5.070685 ACGCATATGACCTATACACTGAGA 58.929 41.667 6.97 0.00 0.00 3.27
100 101 5.712446 ACGCATATGACCTATACACTGAGAT 59.288 40.000 6.97 0.00 0.00 2.75
101 102 6.032717 CGCATATGACCTATACACTGAGATG 58.967 44.000 6.97 0.00 0.00 2.90
102 103 6.336566 GCATATGACCTATACACTGAGATGG 58.663 44.000 6.97 0.00 0.00 3.51
103 104 6.071108 GCATATGACCTATACACTGAGATGGT 60.071 42.308 6.97 0.00 0.00 3.55
104 105 5.798125 ATGACCTATACACTGAGATGGTG 57.202 43.478 0.00 0.00 40.19 4.17
105 106 3.960755 TGACCTATACACTGAGATGGTGG 59.039 47.826 0.00 0.00 38.83 4.61
106 107 3.309296 ACCTATACACTGAGATGGTGGG 58.691 50.000 0.00 0.00 38.83 4.61
107 108 3.052109 ACCTATACACTGAGATGGTGGGA 60.052 47.826 0.00 0.00 38.83 4.37
108 109 3.576118 CCTATACACTGAGATGGTGGGAG 59.424 52.174 0.00 0.00 38.83 4.30
109 110 2.623418 TACACTGAGATGGTGGGAGT 57.377 50.000 0.00 0.00 38.83 3.85
110 111 2.623418 ACACTGAGATGGTGGGAGTA 57.377 50.000 0.00 0.00 38.83 2.59
111 112 2.180276 ACACTGAGATGGTGGGAGTAC 58.820 52.381 0.00 0.00 38.83 2.73
112 113 2.225394 ACACTGAGATGGTGGGAGTACT 60.225 50.000 0.00 0.00 38.83 2.73
113 114 3.011369 ACACTGAGATGGTGGGAGTACTA 59.989 47.826 0.00 0.00 38.83 1.82
114 115 4.023980 CACTGAGATGGTGGGAGTACTAA 58.976 47.826 0.00 0.00 0.00 2.24
115 116 4.024670 ACTGAGATGGTGGGAGTACTAAC 58.975 47.826 0.00 0.00 0.00 2.34
116 117 4.023980 CTGAGATGGTGGGAGTACTAACA 58.976 47.826 0.00 0.00 0.00 2.41
117 118 4.023980 TGAGATGGTGGGAGTACTAACAG 58.976 47.826 0.00 0.00 0.00 3.16
118 119 4.024670 GAGATGGTGGGAGTACTAACAGT 58.975 47.826 0.00 0.00 0.00 3.55
119 120 4.024670 AGATGGTGGGAGTACTAACAGTC 58.975 47.826 0.00 0.00 0.00 3.51
120 121 2.532843 TGGTGGGAGTACTAACAGTCC 58.467 52.381 0.00 0.00 37.31 3.85
121 122 2.158279 TGGTGGGAGTACTAACAGTCCA 60.158 50.000 0.00 0.14 39.46 4.02
122 123 2.901839 GGTGGGAGTACTAACAGTCCAA 59.098 50.000 0.00 0.00 39.46 3.53
123 124 3.306571 GGTGGGAGTACTAACAGTCCAAC 60.307 52.174 0.00 0.00 40.16 3.77
124 125 3.322828 GTGGGAGTACTAACAGTCCAACA 59.677 47.826 0.00 0.00 40.48 3.33
125 126 3.322828 TGGGAGTACTAACAGTCCAACAC 59.677 47.826 0.00 0.00 39.46 3.32
126 127 3.577415 GGGAGTACTAACAGTCCAACACT 59.423 47.826 0.00 0.00 39.46 3.55
127 128 4.768968 GGGAGTACTAACAGTCCAACACTA 59.231 45.833 0.00 0.00 39.46 2.74
128 129 5.336293 GGGAGTACTAACAGTCCAACACTAC 60.336 48.000 0.00 0.00 39.46 2.73
129 130 5.242393 GGAGTACTAACAGTCCAACACTACA 59.758 44.000 0.00 0.00 37.87 2.74
130 131 6.328641 AGTACTAACAGTCCAACACTACAG 57.671 41.667 0.00 0.00 32.21 2.74
131 132 5.832060 AGTACTAACAGTCCAACACTACAGT 59.168 40.000 0.00 0.00 32.21 3.55
132 133 7.000472 AGTACTAACAGTCCAACACTACAGTA 59.000 38.462 0.00 0.00 32.21 2.74
133 134 6.081872 ACTAACAGTCCAACACTACAGTAC 57.918 41.667 0.00 0.00 32.21 2.73
134 135 5.832060 ACTAACAGTCCAACACTACAGTACT 59.168 40.000 0.00 0.00 32.21 2.73
135 136 7.000472 ACTAACAGTCCAACACTACAGTACTA 59.000 38.462 0.00 0.00 32.21 1.82
136 137 5.702349 ACAGTCCAACACTACAGTACTAC 57.298 43.478 0.00 0.00 32.21 2.73
137 138 5.135383 ACAGTCCAACACTACAGTACTACA 58.865 41.667 0.00 0.00 32.21 2.74
138 139 5.773680 ACAGTCCAACACTACAGTACTACAT 59.226 40.000 0.00 0.00 32.21 2.29
139 140 6.072064 ACAGTCCAACACTACAGTACTACATC 60.072 42.308 0.00 0.00 32.21 3.06
140 141 5.418209 AGTCCAACACTACAGTACTACATCC 59.582 44.000 0.00 0.00 31.37 3.51
141 142 4.397103 TCCAACACTACAGTACTACATCCG 59.603 45.833 0.00 0.00 0.00 4.18
142 143 4.157289 CCAACACTACAGTACTACATCCGT 59.843 45.833 0.00 0.00 0.00 4.69
143 144 5.330295 CAACACTACAGTACTACATCCGTC 58.670 45.833 0.00 0.00 0.00 4.79
144 145 3.944015 ACACTACAGTACTACATCCGTCC 59.056 47.826 0.00 0.00 0.00 4.79
145 146 4.197750 CACTACAGTACTACATCCGTCCT 58.802 47.826 0.00 0.00 0.00 3.85
146 147 4.035324 CACTACAGTACTACATCCGTCCTG 59.965 50.000 0.00 0.00 0.00 3.86
147 148 2.376109 ACAGTACTACATCCGTCCTGG 58.624 52.381 0.00 0.00 40.09 4.45
148 149 2.291411 ACAGTACTACATCCGTCCTGGT 60.291 50.000 0.00 0.00 39.52 4.00
149 150 2.758979 CAGTACTACATCCGTCCTGGTT 59.241 50.000 0.00 0.00 39.52 3.67
150 151 3.194968 CAGTACTACATCCGTCCTGGTTT 59.805 47.826 0.00 0.00 39.52 3.27
151 152 4.400251 CAGTACTACATCCGTCCTGGTTTA 59.600 45.833 0.00 0.00 39.52 2.01
152 153 5.068723 CAGTACTACATCCGTCCTGGTTTAT 59.931 44.000 0.00 0.00 39.52 1.40
153 154 5.659971 AGTACTACATCCGTCCTGGTTTATT 59.340 40.000 0.00 0.00 39.52 1.40
154 155 4.766375 ACTACATCCGTCCTGGTTTATTG 58.234 43.478 0.00 0.00 39.52 1.90
155 156 3.992943 ACATCCGTCCTGGTTTATTGA 57.007 42.857 0.00 0.00 39.52 2.57
156 157 4.503714 ACATCCGTCCTGGTTTATTGAT 57.496 40.909 0.00 0.00 39.52 2.57
157 158 4.451900 ACATCCGTCCTGGTTTATTGATC 58.548 43.478 0.00 0.00 39.52 2.92
158 159 3.553828 TCCGTCCTGGTTTATTGATCC 57.446 47.619 0.00 0.00 39.52 3.36
159 160 2.171870 TCCGTCCTGGTTTATTGATCCC 59.828 50.000 0.00 0.00 39.52 3.85
160 161 2.092646 CCGTCCTGGTTTATTGATCCCA 60.093 50.000 0.00 0.00 0.00 4.37
161 162 3.435026 CCGTCCTGGTTTATTGATCCCAT 60.435 47.826 0.00 0.00 0.00 4.00
162 163 3.815401 CGTCCTGGTTTATTGATCCCATC 59.185 47.826 0.00 0.00 0.00 3.51
163 164 4.685848 CGTCCTGGTTTATTGATCCCATCA 60.686 45.833 0.00 0.00 37.55 3.07
164 165 5.388654 GTCCTGGTTTATTGATCCCATCAT 58.611 41.667 0.00 0.00 39.39 2.45
165 166 6.542821 GTCCTGGTTTATTGATCCCATCATA 58.457 40.000 0.00 0.00 39.39 2.15
166 167 7.177878 GTCCTGGTTTATTGATCCCATCATAT 58.822 38.462 0.00 0.00 39.39 1.78
167 168 7.671398 GTCCTGGTTTATTGATCCCATCATATT 59.329 37.037 0.00 0.00 39.39 1.28
168 169 8.233820 TCCTGGTTTATTGATCCCATCATATTT 58.766 33.333 0.00 0.00 39.39 1.40
169 170 8.873144 CCTGGTTTATTGATCCCATCATATTTT 58.127 33.333 0.00 0.00 39.39 1.82
217 218 9.900710 TTTAACTAACGAAATGTTAATGCATGT 57.099 25.926 0.00 0.00 42.31 3.21
220 221 8.889849 ACTAACGAAATGTTAATGCATGTAAC 57.110 30.769 17.61 17.61 42.31 2.50
221 222 8.508062 ACTAACGAAATGTTAATGCATGTAACA 58.492 29.630 24.01 24.01 42.31 2.41
222 223 9.335891 CTAACGAAATGTTAATGCATGTAACAA 57.664 29.630 24.85 15.41 42.92 2.83
223 224 8.581057 AACGAAATGTTAATGCATGTAACAAA 57.419 26.923 24.85 12.51 42.92 2.83
224 225 8.581057 ACGAAATGTTAATGCATGTAACAAAA 57.419 26.923 24.85 12.04 42.92 2.44
225 226 9.035607 ACGAAATGTTAATGCATGTAACAAAAA 57.964 25.926 24.85 11.81 42.92 1.94
262 263 9.675464 AGAAACTATGTTTAAATACGGATCCAA 57.325 29.630 13.41 0.00 0.00 3.53
263 264 9.712359 GAAACTATGTTTAAATACGGATCCAAC 57.288 33.333 13.41 7.22 0.00 3.77
264 265 7.473027 ACTATGTTTAAATACGGATCCAACG 57.527 36.000 13.41 0.00 37.36 4.10
265 266 7.267128 ACTATGTTTAAATACGGATCCAACGA 58.733 34.615 13.41 0.00 34.93 3.85
266 267 5.783100 TGTTTAAATACGGATCCAACGAC 57.217 39.130 13.41 0.00 34.93 4.34
267 268 5.236282 TGTTTAAATACGGATCCAACGACA 58.764 37.500 13.41 2.45 34.93 4.35
268 269 5.875910 TGTTTAAATACGGATCCAACGACAT 59.124 36.000 13.41 0.00 34.93 3.06
269 270 7.040494 TGTTTAAATACGGATCCAACGACATA 58.960 34.615 13.41 0.00 34.93 2.29
270 271 7.548427 TGTTTAAATACGGATCCAACGACATAA 59.452 33.333 13.41 0.00 34.93 1.90
271 272 8.553696 GTTTAAATACGGATCCAACGACATAAT 58.446 33.333 13.41 0.00 34.93 1.28
272 273 8.665643 TTAAATACGGATCCAACGACATAATT 57.334 30.769 13.41 0.00 34.93 1.40
273 274 7.562454 AAATACGGATCCAACGACATAATTT 57.438 32.000 13.41 1.32 34.93 1.82
274 275 7.562454 AATACGGATCCAACGACATAATTTT 57.438 32.000 13.41 0.00 34.93 1.82
275 276 5.890424 ACGGATCCAACGACATAATTTTT 57.110 34.783 13.41 0.00 34.93 1.94
276 277 5.636837 ACGGATCCAACGACATAATTTTTG 58.363 37.500 13.41 0.00 34.93 2.44
277 278 4.499040 CGGATCCAACGACATAATTTTTGC 59.501 41.667 13.41 0.00 0.00 3.68
278 279 5.650543 GGATCCAACGACATAATTTTTGCT 58.349 37.500 6.95 0.00 0.00 3.91
279 280 6.457663 CGGATCCAACGACATAATTTTTGCTA 60.458 38.462 13.41 0.00 0.00 3.49
280 281 7.254852 GGATCCAACGACATAATTTTTGCTAA 58.745 34.615 6.95 0.00 0.00 3.09
281 282 7.220108 GGATCCAACGACATAATTTTTGCTAAC 59.780 37.037 6.95 0.00 0.00 2.34
282 283 6.971602 TCCAACGACATAATTTTTGCTAACA 58.028 32.000 0.00 0.00 0.00 2.41
283 284 7.598278 TCCAACGACATAATTTTTGCTAACAT 58.402 30.769 0.00 0.00 0.00 2.71
284 285 7.540400 TCCAACGACATAATTTTTGCTAACATG 59.460 33.333 0.00 0.00 0.00 3.21
285 286 6.869421 ACGACATAATTTTTGCTAACATGC 57.131 33.333 0.00 0.00 0.00 4.06
286 287 6.385843 ACGACATAATTTTTGCTAACATGCA 58.614 32.000 0.00 0.00 41.65 3.96
287 288 7.035004 ACGACATAATTTTTGCTAACATGCAT 58.965 30.769 0.00 0.00 42.96 3.96
288 289 7.545265 ACGACATAATTTTTGCTAACATGCATT 59.455 29.630 0.00 0.00 42.96 3.56
289 290 7.842239 CGACATAATTTTTGCTAACATGCATTG 59.158 33.333 0.00 0.00 42.96 2.82
290 291 8.550710 ACATAATTTTTGCTAACATGCATTGT 57.449 26.923 0.00 0.00 42.96 2.71
297 298 9.661187 TTTTTGCTAACATGCATTGTTATTTTG 57.339 25.926 16.74 9.89 46.88 2.44
298 299 7.959689 TTGCTAACATGCATTGTTATTTTGT 57.040 28.000 16.74 1.06 46.88 2.83
299 300 7.959689 TGCTAACATGCATTGTTATTTTGTT 57.040 28.000 16.74 10.56 46.88 2.83
300 301 9.481340 TTGCTAACATGCATTGTTATTTTGTTA 57.519 25.926 16.74 11.02 46.88 2.41
301 302 9.138062 TGCTAACATGCATTGTTATTTTGTTAG 57.862 29.630 19.51 19.51 46.88 2.34
302 303 9.139174 GCTAACATGCATTGTTATTTTGTTAGT 57.861 29.630 22.38 2.84 46.88 2.24
326 327 8.184192 AGTTAAATCTATGATCAAAGTTTGGCG 58.816 33.333 15.47 0.00 0.00 5.69
327 328 4.558538 ATCTATGATCAAAGTTTGGCGC 57.441 40.909 15.47 0.00 0.00 6.53
328 329 3.342719 TCTATGATCAAAGTTTGGCGCA 58.657 40.909 15.47 11.11 0.00 6.09
329 330 3.755905 TCTATGATCAAAGTTTGGCGCAA 59.244 39.130 15.47 0.00 0.00 4.85
330 331 2.879002 TGATCAAAGTTTGGCGCAAA 57.121 40.000 15.47 0.00 0.00 3.68
331 332 3.170791 TGATCAAAGTTTGGCGCAAAA 57.829 38.095 15.47 8.15 35.03 2.44
332 333 3.726607 TGATCAAAGTTTGGCGCAAAAT 58.273 36.364 14.14 6.35 35.03 1.82
333 334 4.876125 TGATCAAAGTTTGGCGCAAAATA 58.124 34.783 14.14 0.00 35.03 1.40
334 335 4.683781 TGATCAAAGTTTGGCGCAAAATAC 59.316 37.500 14.14 1.73 35.03 1.89
335 336 4.314740 TCAAAGTTTGGCGCAAAATACT 57.685 36.364 14.14 4.46 35.03 2.12
336 337 5.440234 TCAAAGTTTGGCGCAAAATACTA 57.560 34.783 14.14 0.00 35.03 1.82
337 338 5.833082 TCAAAGTTTGGCGCAAAATACTAA 58.167 33.333 14.14 0.00 35.03 2.24
338 339 5.918011 TCAAAGTTTGGCGCAAAATACTAAG 59.082 36.000 14.14 4.21 35.03 2.18
339 340 4.434713 AGTTTGGCGCAAAATACTAAGG 57.565 40.909 14.14 0.00 35.03 2.69
340 341 3.192633 AGTTTGGCGCAAAATACTAAGGG 59.807 43.478 14.14 0.00 35.03 3.95
341 342 2.500392 TGGCGCAAAATACTAAGGGT 57.500 45.000 10.83 0.00 0.00 4.34
342 343 2.088423 TGGCGCAAAATACTAAGGGTG 58.912 47.619 10.83 0.00 0.00 4.61
343 344 1.202256 GGCGCAAAATACTAAGGGTGC 60.202 52.381 10.83 0.00 0.00 5.01
344 345 1.202256 GCGCAAAATACTAAGGGTGCC 60.202 52.381 0.30 0.00 0.00 5.01
345 346 2.088423 CGCAAAATACTAAGGGTGCCA 58.912 47.619 0.00 0.00 0.00 4.92
346 347 2.490115 CGCAAAATACTAAGGGTGCCAA 59.510 45.455 0.00 0.00 0.00 4.52
347 348 3.130340 CGCAAAATACTAAGGGTGCCAAT 59.870 43.478 0.00 0.00 0.00 3.16
348 349 4.336993 CGCAAAATACTAAGGGTGCCAATA 59.663 41.667 0.00 0.00 0.00 1.90
349 350 5.163602 CGCAAAATACTAAGGGTGCCAATAA 60.164 40.000 0.00 0.00 0.00 1.40
350 351 6.626181 CGCAAAATACTAAGGGTGCCAATAAA 60.626 38.462 0.00 0.00 0.00 1.40
351 352 6.533723 GCAAAATACTAAGGGTGCCAATAAAC 59.466 38.462 0.00 0.00 0.00 2.01
352 353 6.785337 AAATACTAAGGGTGCCAATAAACC 57.215 37.500 0.00 0.00 35.59 3.27
353 354 3.818295 ACTAAGGGTGCCAATAAACCA 57.182 42.857 0.00 0.00 38.27 3.67
354 355 3.697166 ACTAAGGGTGCCAATAAACCAG 58.303 45.455 0.00 0.00 38.27 4.00
355 356 1.937191 AAGGGTGCCAATAAACCAGG 58.063 50.000 0.00 0.00 38.27 4.45
356 357 1.080638 AGGGTGCCAATAAACCAGGA 58.919 50.000 0.00 0.00 38.27 3.86
357 358 1.182667 GGGTGCCAATAAACCAGGAC 58.817 55.000 0.00 0.00 38.27 3.85
358 359 0.808755 GGTGCCAATAAACCAGGACG 59.191 55.000 0.00 0.00 36.41 4.79
359 360 0.808755 GTGCCAATAAACCAGGACGG 59.191 55.000 0.00 0.00 42.50 4.79
360 361 0.693622 TGCCAATAAACCAGGACGGA 59.306 50.000 0.00 0.00 38.63 4.69
361 362 1.339631 TGCCAATAAACCAGGACGGAG 60.340 52.381 0.00 0.00 38.63 4.63
362 363 2.017113 GCCAATAAACCAGGACGGAGG 61.017 57.143 0.00 0.00 38.63 4.30
363 364 1.280998 CCAATAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
439 474 2.738846 TCTGCGAGCTCTCAAATTGTTC 59.261 45.455 12.85 0.00 0.00 3.18
453 488 1.658994 TTGTTCGCGTTGACTCCTTT 58.341 45.000 5.77 0.00 0.00 3.11
455 490 1.595794 TGTTCGCGTTGACTCCTTTTC 59.404 47.619 5.77 0.00 0.00 2.29
457 492 3.054878 GTTCGCGTTGACTCCTTTTCTA 58.945 45.455 5.77 0.00 0.00 2.10
458 493 3.374220 TCGCGTTGACTCCTTTTCTAA 57.626 42.857 5.77 0.00 0.00 2.10
459 494 3.054878 TCGCGTTGACTCCTTTTCTAAC 58.945 45.455 5.77 0.00 0.00 2.34
460 495 2.157085 CGCGTTGACTCCTTTTCTAACC 59.843 50.000 0.00 0.00 0.00 2.85
462 497 3.751698 GCGTTGACTCCTTTTCTAACCAT 59.248 43.478 0.00 0.00 0.00 3.55
522 567 4.051922 GTCGCCAGTACTAGATTCCAATG 58.948 47.826 0.00 0.00 0.00 2.82
553 602 6.333416 TGCATTCGCTCCATAGATCTTATAC 58.667 40.000 0.00 0.00 39.64 1.47
558 607 7.089770 TCGCTCCATAGATCTTATACACATC 57.910 40.000 0.00 0.00 0.00 3.06
574 633 2.698797 CACATCCCGGTACCAATCTAGT 59.301 50.000 13.54 0.00 0.00 2.57
610 676 0.251916 TCGTTCTCGCCAAATGGGAT 59.748 50.000 0.90 0.00 38.95 3.85
611 677 1.483004 TCGTTCTCGCCAAATGGGATA 59.517 47.619 0.90 0.00 38.95 2.59
612 678 1.597663 CGTTCTCGCCAAATGGGATAC 59.402 52.381 0.90 0.00 40.01 2.24
633 706 7.976734 GGATACATGTAGTAACTCATAGCCATC 59.023 40.741 11.91 0.00 36.05 3.51
693 766 1.927174 CCTTGCCTCTCGTTTACATCG 59.073 52.381 0.00 0.00 0.00 3.84
699 772 2.683867 CCTCTCGTTTACATCGTCCTCT 59.316 50.000 0.00 0.00 0.00 3.69
825 935 5.510674 GTCGTACACGCATATATACATGTCC 59.489 44.000 0.00 0.00 39.60 4.02
907 1029 0.035439 TCTTGCGTTCCTGATTCCCC 60.035 55.000 0.00 0.00 0.00 4.81
909 1031 1.832719 TTGCGTTCCTGATTCCCCGA 61.833 55.000 0.00 0.00 0.00 5.14
1003 1131 0.808755 TAGCGAGAACTGCGACATGA 59.191 50.000 0.00 0.00 37.44 3.07
1004 1132 0.038251 AGCGAGAACTGCGACATGAA 60.038 50.000 0.00 0.00 37.44 2.57
1009 1137 1.001293 AGAACTGCGACATGAAGAGCA 59.999 47.619 0.00 4.38 38.03 4.26
1091 1219 2.050350 CGGGCTGTAACCTCTCCGA 61.050 63.158 0.00 0.00 39.83 4.55
1095 1223 0.101579 GCTGTAACCTCTCCGAGCTC 59.898 60.000 2.73 2.73 0.00 4.09
1200 1328 1.216710 CGTCTGCTTCCTCTCCACC 59.783 63.158 0.00 0.00 0.00 4.61
1243 1371 3.834799 GGTACGAGGAGCCCGTGG 61.835 72.222 11.55 0.00 40.76 4.94
1244 1372 3.834799 GTACGAGGAGCCCGTGGG 61.835 72.222 0.00 0.00 40.76 4.61
1359 1490 1.878522 GGACTACGCCATGACGCAG 60.879 63.158 0.00 0.00 36.19 5.18
1362 1493 1.589993 CTACGCCATGACGCAGGAG 60.590 63.158 0.00 0.00 36.19 3.69
1457 1588 2.200337 GGCACTGGTTCAACCACCC 61.200 63.158 4.67 2.66 44.79 4.61
1498 1629 2.358247 AGATCGCCGGCGTGTTTT 60.358 55.556 44.16 25.96 40.74 2.43
1724 1861 3.453070 GAGAGGTGCCCGAGGATGC 62.453 68.421 0.00 0.00 0.00 3.91
1727 1864 4.467084 GGTGCCCGAGGATGCGAA 62.467 66.667 0.00 0.00 0.00 4.70
1879 2028 2.526432 ACATCGTGAAGGACAGGTACT 58.474 47.619 0.00 0.00 43.88 2.73
1894 2043 2.521451 TACTGTGCCGGAAAGCCCA 61.521 57.895 5.05 0.00 34.14 5.36
1974 2123 2.078849 TCAACGACATACTGGTGCAG 57.921 50.000 0.00 0.00 37.52 4.41
1977 2126 2.299993 ACGACATACTGGTGCAGATG 57.700 50.000 0.00 0.00 35.18 2.90
1978 2127 1.134699 ACGACATACTGGTGCAGATGG 60.135 52.381 0.00 0.00 35.18 3.51
2110 3858 3.978855 TCGTCTAAATGTCTTGTCACGTG 59.021 43.478 9.94 9.94 0.00 4.49
2120 3872 4.142491 TGTCTTGTCACGTGCTTGAATTTT 60.142 37.500 11.67 0.00 0.00 1.82
2157 3909 2.101917 ACTTCTTTTCTTGTCCGTCGGA 59.898 45.455 10.71 10.71 0.00 4.55
2180 3932 1.374125 CATCCAACCGCTGACACGA 60.374 57.895 0.00 0.00 34.06 4.35
2184 3936 1.227999 CCAACCGCTGACACGACATT 61.228 55.000 0.00 0.00 34.06 2.71
2191 3943 2.143122 GCTGACACGACATTTTCCTCA 58.857 47.619 0.00 0.00 0.00 3.86
2192 3944 2.548057 GCTGACACGACATTTTCCTCAA 59.452 45.455 0.00 0.00 0.00 3.02
2193 3945 3.607078 GCTGACACGACATTTTCCTCAAC 60.607 47.826 0.00 0.00 0.00 3.18
2194 3946 3.536570 TGACACGACATTTTCCTCAACA 58.463 40.909 0.00 0.00 0.00 3.33
2195 3947 4.133820 TGACACGACATTTTCCTCAACAT 58.866 39.130 0.00 0.00 0.00 2.71
2262 4048 7.174946 TCAACATGAGAAAGTTTCCTATTGTCC 59.825 37.037 12.05 0.00 0.00 4.02
2294 4080 9.082313 AGAAACTTTGATGTTTGGATTATCACT 57.918 29.630 0.00 0.00 39.86 3.41
2364 4150 9.214957 AGATTTTGTATTCAGTGTATTGTTCGA 57.785 29.630 0.00 0.00 0.00 3.71
2472 4263 5.121768 ACAAAAATCGTCTTAATCCGAGGTG 59.878 40.000 3.49 2.13 36.41 4.00
2497 4288 9.653287 TGGTATGTAAAAGTTAGAGACATTGAG 57.347 33.333 0.00 0.00 33.05 3.02
2526 4317 1.305219 TACCATGAGGCGCAAAGTGC 61.305 55.000 10.83 0.00 39.06 4.40
2629 4422 3.881688 CTGAAGATGGCCTTGAATCGAAT 59.118 43.478 3.32 0.00 34.68 3.34
2642 4437 9.353999 GCCTTGAATCGAATAAAGTTAAACATT 57.646 29.630 0.00 0.00 0.00 2.71
2715 4510 1.480954 TCCGAGGTCATTTGTAGCCTC 59.519 52.381 0.00 0.00 42.90 4.70
2765 4563 4.641541 TCACACTTACCTAATCCGATTCGA 59.358 41.667 7.83 0.00 0.00 3.71
2811 4609 5.356470 CAGGATTTGGAATCCTTCTCTTGTC 59.644 44.000 17.35 0.00 45.78 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.190326 TGTTTAGAAACTACATCCTCTTGAGA 57.810 34.615 6.69 0.00 39.59 3.27
48 49 9.649167 GTTCTAGGTTGACAATTTAACTAGCTA 57.351 33.333 0.00 0.00 0.00 3.32
49 50 8.376270 AGTTCTAGGTTGACAATTTAACTAGCT 58.624 33.333 0.00 0.00 0.00 3.32
50 51 8.549338 AGTTCTAGGTTGACAATTTAACTAGC 57.451 34.615 0.00 0.00 0.00 3.42
52 53 9.630098 CGTAGTTCTAGGTTGACAATTTAACTA 57.370 33.333 0.00 0.32 0.00 2.24
53 54 7.117379 GCGTAGTTCTAGGTTGACAATTTAACT 59.883 37.037 0.00 1.19 0.00 2.24
54 55 7.095523 TGCGTAGTTCTAGGTTGACAATTTAAC 60.096 37.037 0.00 0.00 0.00 2.01
55 56 6.930164 TGCGTAGTTCTAGGTTGACAATTTAA 59.070 34.615 0.00 0.00 0.00 1.52
56 57 6.457355 TGCGTAGTTCTAGGTTGACAATTTA 58.543 36.000 0.00 0.00 0.00 1.40
57 58 5.302360 TGCGTAGTTCTAGGTTGACAATTT 58.698 37.500 0.00 0.00 0.00 1.82
58 59 4.890088 TGCGTAGTTCTAGGTTGACAATT 58.110 39.130 0.00 0.00 0.00 2.32
59 60 4.530710 TGCGTAGTTCTAGGTTGACAAT 57.469 40.909 0.00 0.00 0.00 2.71
60 61 4.530710 ATGCGTAGTTCTAGGTTGACAA 57.469 40.909 0.00 0.00 0.00 3.18
61 62 5.358725 TCATATGCGTAGTTCTAGGTTGACA 59.641 40.000 0.00 0.00 0.00 3.58
62 63 5.686397 GTCATATGCGTAGTTCTAGGTTGAC 59.314 44.000 0.00 0.00 0.00 3.18
63 64 5.221185 GGTCATATGCGTAGTTCTAGGTTGA 60.221 44.000 0.00 0.00 0.00 3.18
64 65 4.982916 GGTCATATGCGTAGTTCTAGGTTG 59.017 45.833 0.00 0.00 0.00 3.77
65 66 4.894114 AGGTCATATGCGTAGTTCTAGGTT 59.106 41.667 0.00 0.00 0.00 3.50
66 67 4.471548 AGGTCATATGCGTAGTTCTAGGT 58.528 43.478 0.00 0.00 0.00 3.08
67 68 6.761099 ATAGGTCATATGCGTAGTTCTAGG 57.239 41.667 0.00 0.00 0.00 3.02
68 69 8.176365 GTGTATAGGTCATATGCGTAGTTCTAG 58.824 40.741 0.00 0.00 29.60 2.43
69 70 7.881751 AGTGTATAGGTCATATGCGTAGTTCTA 59.118 37.037 0.00 0.00 29.60 2.10
70 71 6.715718 AGTGTATAGGTCATATGCGTAGTTCT 59.284 38.462 0.00 0.00 29.60 3.01
71 72 6.802348 CAGTGTATAGGTCATATGCGTAGTTC 59.198 42.308 0.00 0.00 29.60 3.01
72 73 6.489022 TCAGTGTATAGGTCATATGCGTAGTT 59.511 38.462 0.00 0.00 29.60 2.24
73 74 6.002082 TCAGTGTATAGGTCATATGCGTAGT 58.998 40.000 0.00 0.00 29.60 2.73
74 75 6.371825 TCTCAGTGTATAGGTCATATGCGTAG 59.628 42.308 0.00 0.00 29.60 3.51
75 76 6.235664 TCTCAGTGTATAGGTCATATGCGTA 58.764 40.000 0.00 0.36 29.60 4.42
76 77 5.070685 TCTCAGTGTATAGGTCATATGCGT 58.929 41.667 0.00 0.00 29.60 5.24
77 78 5.629079 TCTCAGTGTATAGGTCATATGCG 57.371 43.478 0.00 0.00 29.60 4.73
78 79 6.071108 ACCATCTCAGTGTATAGGTCATATGC 60.071 42.308 0.00 0.00 0.00 3.14
79 80 7.318893 CACCATCTCAGTGTATAGGTCATATG 58.681 42.308 0.00 0.00 0.00 1.78
80 81 6.438741 CCACCATCTCAGTGTATAGGTCATAT 59.561 42.308 0.00 0.00 33.20 1.78
81 82 5.775195 CCACCATCTCAGTGTATAGGTCATA 59.225 44.000 0.00 0.00 33.20 2.15
82 83 4.590647 CCACCATCTCAGTGTATAGGTCAT 59.409 45.833 0.00 0.00 33.20 3.06
83 84 3.960755 CCACCATCTCAGTGTATAGGTCA 59.039 47.826 0.00 0.00 33.20 4.02
84 85 3.322254 CCCACCATCTCAGTGTATAGGTC 59.678 52.174 0.00 0.00 33.20 3.85
85 86 3.052109 TCCCACCATCTCAGTGTATAGGT 60.052 47.826 0.00 0.00 33.20 3.08
86 87 3.576118 CTCCCACCATCTCAGTGTATAGG 59.424 52.174 0.00 0.00 33.20 2.57
87 88 4.219115 ACTCCCACCATCTCAGTGTATAG 58.781 47.826 0.00 0.00 33.20 1.31
88 89 4.265856 ACTCCCACCATCTCAGTGTATA 57.734 45.455 0.00 0.00 33.20 1.47
89 90 3.121929 ACTCCCACCATCTCAGTGTAT 57.878 47.619 0.00 0.00 33.20 2.29
90 91 2.623418 ACTCCCACCATCTCAGTGTA 57.377 50.000 0.00 0.00 33.20 2.90
91 92 2.180276 GTACTCCCACCATCTCAGTGT 58.820 52.381 0.00 0.00 33.20 3.55
92 93 2.461695 AGTACTCCCACCATCTCAGTG 58.538 52.381 0.00 0.00 34.91 3.66
93 94 2.930109 AGTACTCCCACCATCTCAGT 57.070 50.000 0.00 0.00 0.00 3.41
94 95 4.023980 TGTTAGTACTCCCACCATCTCAG 58.976 47.826 0.00 0.00 0.00 3.35
95 96 4.023980 CTGTTAGTACTCCCACCATCTCA 58.976 47.826 0.00 0.00 0.00 3.27
96 97 4.024670 ACTGTTAGTACTCCCACCATCTC 58.975 47.826 0.00 0.00 0.00 2.75
97 98 4.024670 GACTGTTAGTACTCCCACCATCT 58.975 47.826 0.00 0.00 0.00 2.90
98 99 3.132467 GGACTGTTAGTACTCCCACCATC 59.868 52.174 0.00 0.00 0.00 3.51
99 100 3.105283 GGACTGTTAGTACTCCCACCAT 58.895 50.000 0.00 0.00 0.00 3.55
100 101 2.158279 TGGACTGTTAGTACTCCCACCA 60.158 50.000 0.00 0.49 27.92 4.17
101 102 2.532843 TGGACTGTTAGTACTCCCACC 58.467 52.381 0.00 0.00 27.92 4.61
102 103 3.322828 TGTTGGACTGTTAGTACTCCCAC 59.677 47.826 0.00 0.00 27.92 4.61
103 104 3.322828 GTGTTGGACTGTTAGTACTCCCA 59.677 47.826 0.00 0.00 27.92 4.37
104 105 3.577415 AGTGTTGGACTGTTAGTACTCCC 59.423 47.826 0.00 0.00 31.75 4.30
105 106 4.868314 AGTGTTGGACTGTTAGTACTCC 57.132 45.455 0.00 0.00 31.75 3.85
106 107 6.016443 ACTGTAGTGTTGGACTGTTAGTACTC 60.016 42.308 0.00 0.00 35.96 2.59
107 108 5.832060 ACTGTAGTGTTGGACTGTTAGTACT 59.168 40.000 0.00 0.00 35.96 2.73
108 109 6.081872 ACTGTAGTGTTGGACTGTTAGTAC 57.918 41.667 0.00 0.00 35.96 2.73
109 110 7.000472 AGTACTGTAGTGTTGGACTGTTAGTA 59.000 38.462 0.00 0.00 35.96 1.82
110 111 5.832060 AGTACTGTAGTGTTGGACTGTTAGT 59.168 40.000 0.00 0.00 35.96 2.24
111 112 6.328641 AGTACTGTAGTGTTGGACTGTTAG 57.671 41.667 0.00 0.00 35.96 2.34
112 113 6.772233 TGTAGTACTGTAGTGTTGGACTGTTA 59.228 38.462 5.39 0.00 35.96 2.41
113 114 5.595542 TGTAGTACTGTAGTGTTGGACTGTT 59.404 40.000 5.39 0.00 35.96 3.16
114 115 5.135383 TGTAGTACTGTAGTGTTGGACTGT 58.865 41.667 5.39 0.00 35.96 3.55
115 116 5.700722 TGTAGTACTGTAGTGTTGGACTG 57.299 43.478 5.39 0.00 35.96 3.51
116 117 5.418209 GGATGTAGTACTGTAGTGTTGGACT 59.582 44.000 5.39 0.00 38.88 3.85
117 118 5.648572 GGATGTAGTACTGTAGTGTTGGAC 58.351 45.833 5.39 0.00 0.00 4.02
118 119 4.397103 CGGATGTAGTACTGTAGTGTTGGA 59.603 45.833 5.39 0.00 0.00 3.53
119 120 4.157289 ACGGATGTAGTACTGTAGTGTTGG 59.843 45.833 5.39 0.00 0.00 3.77
120 121 5.306532 ACGGATGTAGTACTGTAGTGTTG 57.693 43.478 5.39 0.00 0.00 3.33
121 122 4.397417 GGACGGATGTAGTACTGTAGTGTT 59.603 45.833 5.39 0.00 0.00 3.32
122 123 3.944015 GGACGGATGTAGTACTGTAGTGT 59.056 47.826 5.39 0.00 0.00 3.55
123 124 4.035324 CAGGACGGATGTAGTACTGTAGTG 59.965 50.000 5.39 0.00 43.66 2.74
124 125 4.197750 CAGGACGGATGTAGTACTGTAGT 58.802 47.826 5.39 0.22 43.66 2.73
125 126 3.564644 CCAGGACGGATGTAGTACTGTAG 59.435 52.174 5.39 0.00 46.41 2.74
126 127 3.054139 ACCAGGACGGATGTAGTACTGTA 60.054 47.826 5.39 0.00 46.41 2.74
127 128 2.291411 ACCAGGACGGATGTAGTACTGT 60.291 50.000 5.39 0.00 46.41 3.55
129 130 2.822707 ACCAGGACGGATGTAGTACT 57.177 50.000 0.00 0.00 38.63 2.73
130 131 3.881937 AAACCAGGACGGATGTAGTAC 57.118 47.619 0.00 0.00 38.63 2.73
131 132 5.657745 TCAATAAACCAGGACGGATGTAGTA 59.342 40.000 0.00 0.00 38.63 1.82
132 133 4.468510 TCAATAAACCAGGACGGATGTAGT 59.531 41.667 0.00 0.00 38.63 2.73
133 134 5.018539 TCAATAAACCAGGACGGATGTAG 57.981 43.478 0.00 0.00 38.63 2.74
134 135 5.454187 GGATCAATAAACCAGGACGGATGTA 60.454 44.000 0.00 0.00 38.63 2.29
135 136 3.992943 TCAATAAACCAGGACGGATGT 57.007 42.857 0.00 0.00 38.63 3.06
136 137 3.815401 GGATCAATAAACCAGGACGGATG 59.185 47.826 0.00 0.00 38.63 3.51
137 138 3.181443 GGGATCAATAAACCAGGACGGAT 60.181 47.826 0.00 0.00 38.63 4.18
138 139 2.171870 GGGATCAATAAACCAGGACGGA 59.828 50.000 0.00 0.00 38.63 4.69
139 140 2.092646 TGGGATCAATAAACCAGGACGG 60.093 50.000 0.00 0.00 42.50 4.79
140 141 3.275617 TGGGATCAATAAACCAGGACG 57.724 47.619 0.00 0.00 0.00 4.79
141 142 4.792068 TGATGGGATCAATAAACCAGGAC 58.208 43.478 0.00 0.00 36.11 3.85
142 143 5.668135 ATGATGGGATCAATAAACCAGGA 57.332 39.130 0.00 0.00 43.50 3.86
143 144 8.426569 AAATATGATGGGATCAATAAACCAGG 57.573 34.615 0.00 0.00 43.50 4.45
191 192 9.900710 ACATGCATTAACATTTCGTTAGTTAAA 57.099 25.926 0.00 0.00 41.10 1.52
194 195 9.337091 GTTACATGCATTAACATTTCGTTAGTT 57.663 29.630 18.70 0.00 41.10 2.24
195 196 8.508062 TGTTACATGCATTAACATTTCGTTAGT 58.492 29.630 20.77 6.21 41.10 2.24
196 197 8.888332 TGTTACATGCATTAACATTTCGTTAG 57.112 30.769 20.77 1.33 41.10 2.34
197 198 9.678941 TTTGTTACATGCATTAACATTTCGTTA 57.321 25.926 23.16 11.91 38.81 3.18
198 199 8.581057 TTTGTTACATGCATTAACATTTCGTT 57.419 26.923 23.16 0.00 38.81 3.85
199 200 8.581057 TTTTGTTACATGCATTAACATTTCGT 57.419 26.923 23.16 9.45 38.81 3.85
236 237 9.675464 TTGGATCCGTATTTAAACATAGTTTCT 57.325 29.630 7.39 0.00 0.00 2.52
237 238 9.712359 GTTGGATCCGTATTTAAACATAGTTTC 57.288 33.333 7.39 0.00 0.00 2.78
238 239 8.392612 CGTTGGATCCGTATTTAAACATAGTTT 58.607 33.333 7.39 0.51 0.00 2.66
239 240 7.765360 TCGTTGGATCCGTATTTAAACATAGTT 59.235 33.333 7.39 0.00 0.00 2.24
240 241 7.223387 GTCGTTGGATCCGTATTTAAACATAGT 59.777 37.037 7.39 0.00 0.00 2.12
241 242 7.223193 TGTCGTTGGATCCGTATTTAAACATAG 59.777 37.037 7.39 0.00 0.00 2.23
242 243 7.040494 TGTCGTTGGATCCGTATTTAAACATA 58.960 34.615 7.39 0.00 0.00 2.29
243 244 5.875910 TGTCGTTGGATCCGTATTTAAACAT 59.124 36.000 7.39 0.00 0.00 2.71
244 245 5.236282 TGTCGTTGGATCCGTATTTAAACA 58.764 37.500 7.39 0.76 0.00 2.83
245 246 5.783100 TGTCGTTGGATCCGTATTTAAAC 57.217 39.130 7.39 3.05 0.00 2.01
246 247 8.665643 ATTATGTCGTTGGATCCGTATTTAAA 57.334 30.769 7.39 0.00 0.00 1.52
247 248 8.665643 AATTATGTCGTTGGATCCGTATTTAA 57.334 30.769 7.39 0.06 0.00 1.52
248 249 8.665643 AAATTATGTCGTTGGATCCGTATTTA 57.334 30.769 7.39 0.00 0.00 1.40
249 250 7.562454 AAATTATGTCGTTGGATCCGTATTT 57.438 32.000 7.39 0.19 0.00 1.40
250 251 7.562454 AAAATTATGTCGTTGGATCCGTATT 57.438 32.000 7.39 0.00 0.00 1.89
251 252 7.414436 CAAAAATTATGTCGTTGGATCCGTAT 58.586 34.615 7.39 0.00 0.00 3.06
252 253 6.675971 GCAAAAATTATGTCGTTGGATCCGTA 60.676 38.462 7.39 0.00 0.00 4.02
253 254 5.636837 CAAAAATTATGTCGTTGGATCCGT 58.363 37.500 7.39 0.00 0.00 4.69
254 255 4.499040 GCAAAAATTATGTCGTTGGATCCG 59.501 41.667 7.39 0.00 0.00 4.18
255 256 5.650543 AGCAAAAATTATGTCGTTGGATCC 58.349 37.500 4.20 4.20 0.00 3.36
256 257 7.753132 TGTTAGCAAAAATTATGTCGTTGGATC 59.247 33.333 0.00 0.00 0.00 3.36
257 258 7.598278 TGTTAGCAAAAATTATGTCGTTGGAT 58.402 30.769 0.00 0.00 0.00 3.41
258 259 6.971602 TGTTAGCAAAAATTATGTCGTTGGA 58.028 32.000 0.00 0.00 0.00 3.53
259 260 7.665471 CATGTTAGCAAAAATTATGTCGTTGG 58.335 34.615 0.00 0.00 0.00 3.77
260 261 7.148836 TGCATGTTAGCAAAAATTATGTCGTTG 60.149 33.333 0.00 0.00 42.46 4.10
261 262 6.865726 TGCATGTTAGCAAAAATTATGTCGTT 59.134 30.769 0.00 0.00 42.46 3.85
262 263 6.385843 TGCATGTTAGCAAAAATTATGTCGT 58.614 32.000 0.00 0.00 42.46 4.34
263 264 6.867799 TGCATGTTAGCAAAAATTATGTCG 57.132 33.333 0.00 0.00 42.46 4.35
300 301 8.184192 CGCCAAACTTTGATCATAGATTTAACT 58.816 33.333 18.61 0.00 0.00 2.24
301 302 7.044052 GCGCCAAACTTTGATCATAGATTTAAC 60.044 37.037 18.61 9.70 0.00 2.01
302 303 6.972328 GCGCCAAACTTTGATCATAGATTTAA 59.028 34.615 18.61 0.00 0.00 1.52
303 304 6.094742 TGCGCCAAACTTTGATCATAGATTTA 59.905 34.615 18.61 0.00 0.00 1.40
304 305 5.105797 TGCGCCAAACTTTGATCATAGATTT 60.106 36.000 18.61 12.08 0.00 2.17
305 306 4.398988 TGCGCCAAACTTTGATCATAGATT 59.601 37.500 18.61 10.89 0.00 2.40
306 307 3.947196 TGCGCCAAACTTTGATCATAGAT 59.053 39.130 18.61 5.21 0.00 1.98
307 308 3.342719 TGCGCCAAACTTTGATCATAGA 58.657 40.909 18.61 0.00 0.00 1.98
308 309 3.763097 TGCGCCAAACTTTGATCATAG 57.237 42.857 4.18 11.18 0.00 2.23
309 310 4.511617 TTTGCGCCAAACTTTGATCATA 57.488 36.364 4.18 0.00 0.00 2.15
310 311 3.383620 TTTGCGCCAAACTTTGATCAT 57.616 38.095 4.18 0.00 0.00 2.45
311 312 2.879002 TTTGCGCCAAACTTTGATCA 57.121 40.000 4.18 0.00 0.00 2.92
312 313 4.923281 AGTATTTTGCGCCAAACTTTGATC 59.077 37.500 9.02 0.00 32.79 2.92
313 314 4.881920 AGTATTTTGCGCCAAACTTTGAT 58.118 34.783 9.02 0.00 32.79 2.57
314 315 4.314740 AGTATTTTGCGCCAAACTTTGA 57.685 36.364 9.02 0.00 32.79 2.69
315 316 5.118510 CCTTAGTATTTTGCGCCAAACTTTG 59.881 40.000 9.02 1.07 32.79 2.77
316 317 5.227152 CCTTAGTATTTTGCGCCAAACTTT 58.773 37.500 9.02 0.00 32.79 2.66
317 318 4.321675 CCCTTAGTATTTTGCGCCAAACTT 60.322 41.667 9.02 0.00 32.79 2.66
318 319 3.192633 CCCTTAGTATTTTGCGCCAAACT 59.807 43.478 9.02 6.31 32.79 2.66
319 320 3.057104 ACCCTTAGTATTTTGCGCCAAAC 60.057 43.478 9.02 0.00 32.79 2.93
320 321 3.057174 CACCCTTAGTATTTTGCGCCAAA 60.057 43.478 9.27 9.27 0.00 3.28
321 322 2.490115 CACCCTTAGTATTTTGCGCCAA 59.510 45.455 4.18 0.00 0.00 4.52
322 323 2.088423 CACCCTTAGTATTTTGCGCCA 58.912 47.619 4.18 0.00 0.00 5.69
323 324 1.202256 GCACCCTTAGTATTTTGCGCC 60.202 52.381 4.18 0.00 0.00 6.53
324 325 1.202256 GGCACCCTTAGTATTTTGCGC 60.202 52.381 0.00 0.00 0.00 6.09
325 326 2.088423 TGGCACCCTTAGTATTTTGCG 58.912 47.619 0.00 0.00 0.00 4.85
326 327 4.736126 ATTGGCACCCTTAGTATTTTGC 57.264 40.909 0.00 0.00 0.00 3.68
327 328 7.039270 GGTTTATTGGCACCCTTAGTATTTTG 58.961 38.462 0.00 0.00 0.00 2.44
328 329 6.726764 TGGTTTATTGGCACCCTTAGTATTTT 59.273 34.615 0.00 0.00 31.24 1.82
329 330 6.257586 TGGTTTATTGGCACCCTTAGTATTT 58.742 36.000 0.00 0.00 31.24 1.40
330 331 5.833340 TGGTTTATTGGCACCCTTAGTATT 58.167 37.500 0.00 0.00 31.24 1.89
331 332 5.445964 CTGGTTTATTGGCACCCTTAGTAT 58.554 41.667 0.00 0.00 31.24 2.12
332 333 4.324719 CCTGGTTTATTGGCACCCTTAGTA 60.325 45.833 0.00 0.00 31.24 1.82
333 334 3.563479 CCTGGTTTATTGGCACCCTTAGT 60.563 47.826 0.00 0.00 31.24 2.24
334 335 3.023832 CCTGGTTTATTGGCACCCTTAG 58.976 50.000 0.00 0.00 31.24 2.18
335 336 2.650322 TCCTGGTTTATTGGCACCCTTA 59.350 45.455 0.00 0.00 31.24 2.69
336 337 1.431243 TCCTGGTTTATTGGCACCCTT 59.569 47.619 0.00 0.00 31.24 3.95
337 338 1.080638 TCCTGGTTTATTGGCACCCT 58.919 50.000 0.00 0.00 31.24 4.34
338 339 1.182667 GTCCTGGTTTATTGGCACCC 58.817 55.000 0.00 0.00 31.24 4.61
339 340 0.808755 CGTCCTGGTTTATTGGCACC 59.191 55.000 0.00 0.00 0.00 5.01
340 341 0.808755 CCGTCCTGGTTTATTGGCAC 59.191 55.000 0.00 0.00 0.00 5.01
341 342 0.693622 TCCGTCCTGGTTTATTGGCA 59.306 50.000 0.00 0.00 39.52 4.92
342 343 1.379527 CTCCGTCCTGGTTTATTGGC 58.620 55.000 0.00 0.00 39.52 4.52
343 344 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
344 345 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
345 346 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
346 347 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
347 348 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
348 349 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
349 350 2.842645 ATACTACCTCCGTCCTGGTT 57.157 50.000 0.00 0.00 39.52 3.67
350 351 4.600983 AGTATATACTACCTCCGTCCTGGT 59.399 45.833 13.88 0.00 40.12 4.00
351 352 5.176741 AGTATATACTACCTCCGTCCTGG 57.823 47.826 13.88 0.00 34.13 4.45
352 353 6.700960 CGATAGTATATACTACCTCCGTCCTG 59.299 46.154 22.07 3.19 41.18 3.86
353 354 6.685116 GCGATAGTATATACTACCTCCGTCCT 60.685 46.154 22.07 5.80 41.18 3.85
354 355 5.465056 GCGATAGTATATACTACCTCCGTCC 59.535 48.000 22.07 9.71 41.18 4.79
355 356 6.279882 AGCGATAGTATATACTACCTCCGTC 58.720 44.000 22.07 14.30 41.18 4.79
356 357 6.127225 TGAGCGATAGTATATACTACCTCCGT 60.127 42.308 25.61 13.79 41.18 4.69
357 358 6.200665 GTGAGCGATAGTATATACTACCTCCG 59.799 46.154 25.61 22.97 41.18 4.63
358 359 7.274447 AGTGAGCGATAGTATATACTACCTCC 58.726 42.308 25.61 20.66 41.18 4.30
359 360 8.721019 AAGTGAGCGATAGTATATACTACCTC 57.279 38.462 22.07 23.21 41.18 3.85
360 361 8.948145 CAAAGTGAGCGATAGTATATACTACCT 58.052 37.037 22.07 17.79 41.18 3.08
361 362 7.697291 GCAAAGTGAGCGATAGTATATACTACC 59.303 40.741 22.07 13.65 41.18 3.18
362 363 8.235226 TGCAAAGTGAGCGATAGTATATACTAC 58.765 37.037 22.07 15.23 36.88 2.73
363 364 8.331730 TGCAAAGTGAGCGATAGTATATACTA 57.668 34.615 21.91 21.91 37.73 1.82
423 427 1.461127 ACGCGAACAATTTGAGAGCTC 59.539 47.619 15.93 5.27 0.00 4.09
439 474 2.157085 GGTTAGAAAAGGAGTCAACGCG 59.843 50.000 3.53 3.53 0.00 6.01
453 488 7.880713 TGAGCGCCAAATTATATATGGTTAGAA 59.119 33.333 2.29 0.00 36.57 2.10
455 490 7.609760 TGAGCGCCAAATTATATATGGTTAG 57.390 36.000 2.29 0.00 36.57 2.34
457 492 6.892658 TTGAGCGCCAAATTATATATGGTT 57.107 33.333 2.29 0.00 36.57 3.67
458 493 6.490040 AGTTTGAGCGCCAAATTATATATGGT 59.510 34.615 21.43 0.00 45.48 3.55
459 494 6.913170 AGTTTGAGCGCCAAATTATATATGG 58.087 36.000 21.43 0.00 45.48 2.74
460 495 7.023575 GGAGTTTGAGCGCCAAATTATATATG 58.976 38.462 21.43 0.00 45.48 1.78
462 497 5.178623 CGGAGTTTGAGCGCCAAATTATATA 59.821 40.000 21.43 1.40 45.48 0.86
503 541 5.283457 AGACATTGGAATCTAGTACTGGC 57.717 43.478 5.39 0.00 0.00 4.85
522 567 1.939974 TGGAGCGAATGCATGTAGAC 58.060 50.000 0.00 0.00 46.23 2.59
553 602 2.698797 ACTAGATTGGTACCGGGATGTG 59.301 50.000 6.32 0.00 0.00 3.21
558 607 4.464008 TGTACTACTAGATTGGTACCGGG 58.536 47.826 6.32 0.00 35.17 5.73
574 633 6.512903 CGAGAACGATATGAAGCCTTGTACTA 60.513 42.308 0.00 0.00 42.66 1.82
610 676 6.489022 ACGATGGCTATGAGTTACTACATGTA 59.511 38.462 5.25 5.25 0.00 2.29
611 677 5.302059 ACGATGGCTATGAGTTACTACATGT 59.698 40.000 2.69 2.69 0.00 3.21
612 678 5.773575 ACGATGGCTATGAGTTACTACATG 58.226 41.667 0.00 0.00 0.00 3.21
633 706 3.067833 GGAAGTTCTTGAGGAAGGAACG 58.932 50.000 2.25 0.00 34.23 3.95
693 766 3.306472 AGATGGAGTGGAGTAGAGGAC 57.694 52.381 0.00 0.00 0.00 3.85
699 772 4.264397 TGAGAGGAAAGATGGAGTGGAGTA 60.264 45.833 0.00 0.00 0.00 2.59
825 935 9.507329 AAGCCATTTTCTATGTATATACAGTGG 57.493 33.333 19.80 16.85 39.92 4.00
984 1112 0.808755 TCATGTCGCAGTTCTCGCTA 59.191 50.000 0.00 0.00 0.00 4.26
990 1118 1.127582 GTGCTCTTCATGTCGCAGTTC 59.872 52.381 0.00 0.00 32.38 3.01
1009 1137 2.049063 GCTGACGCACTTCTCCGT 60.049 61.111 0.00 0.00 40.85 4.69
1070 1198 2.284699 AGAGGTTACAGCCCGCCT 60.285 61.111 0.00 0.00 0.00 5.52
1095 1223 3.382832 AGGAACTCTGCCGGGTCG 61.383 66.667 2.18 0.00 0.00 4.79
1212 1340 3.434319 TACCGGTGCGTCGTCTCC 61.434 66.667 19.93 0.00 0.00 3.71
1226 1354 3.834799 CCACGGGCTCCTCGTACC 61.835 72.222 0.00 0.00 38.94 3.34
1240 1368 2.358737 CCAGAACTCGTGGCCCAC 60.359 66.667 2.98 2.98 0.00 4.61
1245 1373 2.738521 CACCGCCAGAACTCGTGG 60.739 66.667 0.00 0.00 38.21 4.94
1246 1374 2.738521 CCACCGCCAGAACTCGTG 60.739 66.667 0.00 0.00 0.00 4.35
1247 1375 4.003788 CCCACCGCCAGAACTCGT 62.004 66.667 0.00 0.00 0.00 4.18
1249 1377 2.047179 GACCCACCGCCAGAACTC 60.047 66.667 0.00 0.00 0.00 3.01
1251 1379 1.671379 GAAGACCCACCGCCAGAAC 60.671 63.158 0.00 0.00 0.00 3.01
1359 1490 1.079750 GTCCAGGAACAGCGTCTCC 60.080 63.158 0.00 0.00 0.00 3.71
1362 1493 3.112709 GCGTCCAGGAACAGCGTC 61.113 66.667 0.00 0.00 0.00 5.19
1547 1678 1.216977 CGGATCACCTTGCGGTACA 59.783 57.895 0.00 0.00 43.24 2.90
1572 1703 4.427312 ACTTTTCGTTGACGTACTCAAGT 58.573 39.130 3.25 0.00 39.69 3.16
1585 1716 2.654912 CGCCGCTCGACTTTTCGTT 61.655 57.895 0.00 0.00 46.01 3.85
1652 1789 1.520787 CGGTGATTCCAGGCGTACC 60.521 63.158 0.00 0.00 35.57 3.34
1661 1798 2.180204 CACGCATCCCGGTGATTCC 61.180 63.158 0.00 0.00 42.52 3.01
1665 1802 4.451150 GAGCACGCATCCCGGTGA 62.451 66.667 0.00 0.00 42.52 4.02
1724 1861 1.874019 CTCATCTCGGCCGTGTTCG 60.874 63.158 27.15 14.96 0.00 3.95
1726 1863 1.541310 TTCCTCATCTCGGCCGTGTT 61.541 55.000 27.15 15.39 0.00 3.32
1727 1864 1.949847 CTTCCTCATCTCGGCCGTGT 61.950 60.000 27.15 10.66 0.00 4.49
1908 2057 0.105964 AGTGCAGGCAGTCGTTGTTA 59.894 50.000 0.00 0.00 0.00 2.41
1909 2058 1.153168 AGTGCAGGCAGTCGTTGTT 60.153 52.632 0.00 0.00 0.00 2.83
1910 2059 1.889105 CAGTGCAGGCAGTCGTTGT 60.889 57.895 0.00 0.00 0.00 3.32
1997 2146 2.279741 CACGATGATCCGAACAATGGT 58.720 47.619 0.00 0.00 0.00 3.55
2083 3831 6.609533 GTGACAAGACATTTAGACGACTCTA 58.390 40.000 0.00 0.00 0.00 2.43
2084 3832 5.462405 GTGACAAGACATTTAGACGACTCT 58.538 41.667 0.00 0.00 0.00 3.24
2088 3836 3.978855 CACGTGACAAGACATTTAGACGA 59.021 43.478 10.90 0.00 0.00 4.20
2157 3909 1.831106 TGTCAGCGGTTGGATGTAGAT 59.169 47.619 0.00 0.00 32.65 1.98
2180 3932 6.322201 AGTTCTTGTCATGTTGAGGAAAATGT 59.678 34.615 0.00 0.00 0.00 2.71
2184 3936 7.873719 TTAAGTTCTTGTCATGTTGAGGAAA 57.126 32.000 0.00 0.00 0.00 3.13
2192 3944 8.462016 GCCATCTTAATTAAGTTCTTGTCATGT 58.538 33.333 21.69 0.00 34.93 3.21
2193 3945 7.917505 GGCCATCTTAATTAAGTTCTTGTCATG 59.082 37.037 21.69 15.28 34.93 3.07
2194 3946 7.836183 AGGCCATCTTAATTAAGTTCTTGTCAT 59.164 33.333 21.69 5.72 34.93 3.06
2195 3947 7.175104 AGGCCATCTTAATTAAGTTCTTGTCA 58.825 34.615 21.69 3.72 34.93 3.58
2254 4040 9.350357 CATCAAAGTTTCTCATTTGGACAATAG 57.650 33.333 0.00 0.00 37.09 1.73
2262 4048 8.597662 ATCCAAACATCAAAGTTTCTCATTTG 57.402 30.769 0.00 0.00 39.55 2.32
2294 4080 3.769844 GGCCCTTTAGATGAGATCGGATA 59.230 47.826 0.00 0.00 0.00 2.59
2364 4150 4.081476 GGCTTTCTTGGATGCTTAATTGGT 60.081 41.667 0.00 0.00 0.00 3.67
2449 4240 5.447279 CCACCTCGGATTAAGACGATTTTTG 60.447 44.000 4.97 1.75 38.56 2.44
2461 4252 6.549433 ACTTTTACATACCACCTCGGATTA 57.451 37.500 0.00 0.00 38.63 1.75
2472 4263 9.099454 CCTCAATGTCTCTAACTTTTACATACC 57.901 37.037 0.00 0.00 30.85 2.73
2497 4288 3.757248 CTCATGGTAGGGCCGCACC 62.757 68.421 19.97 19.97 41.21 5.01
2642 4437 8.697846 ATATTTCGACGAGATGAACAACTTTA 57.302 30.769 10.90 0.00 0.00 1.85
2715 4510 2.290641 CAGTTCGGTTTTTGGGTCTCAG 59.709 50.000 0.00 0.00 0.00 3.35
2765 4563 7.457535 TCCTGTCCAAATCTTTCCCAAATTAAT 59.542 33.333 0.00 0.00 0.00 1.40
2773 4571 4.081476 CCAAATCCTGTCCAAATCTTTCCC 60.081 45.833 0.00 0.00 0.00 3.97
2811 4609 4.452733 GGTGGCTCGACTTCCCCG 62.453 72.222 0.00 0.00 0.00 5.73
2867 4666 6.842163 AGTGGTAAATGATTGTTCGATTGTC 58.158 36.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.