Multiple sequence alignment - TraesCS7D01G192700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G192700 chr7D 100.000 3646 0 0 1 3646 148269241 148265596 0.000000e+00 6734.0
1 TraesCS7D01G192700 chr7D 77.273 572 95 22 2105 2646 148152657 148152091 1.650000e-78 303.0
2 TraesCS7D01G192700 chr7D 75.110 454 74 28 1643 2071 148153095 148152656 3.740000e-40 176.0
3 TraesCS7D01G192700 chr7A 91.759 1990 104 26 1324 3278 149426126 149424162 0.000000e+00 2712.0
4 TraesCS7D01G192700 chr7A 87.946 1037 53 24 263 1284 149427100 149426121 0.000000e+00 1157.0
5 TraesCS7D01G192700 chr7A 94.947 376 14 3 3276 3646 149421969 149421594 5.250000e-163 584.0
6 TraesCS7D01G192700 chr7A 79.821 669 115 15 1856 2507 149306958 149306293 1.530000e-128 470.0
7 TraesCS7D01G192700 chr7A 87.732 269 27 2 15 278 149467203 149466936 3.540000e-80 309.0
8 TraesCS7D01G192700 chr7A 89.744 156 16 0 1937 2092 149414731 149414576 2.220000e-47 200.0
9 TraesCS7D01G192700 chr7B 92.908 1269 57 19 1657 2917 111339634 111338391 0.000000e+00 1814.0
10 TraesCS7D01G192700 chr7B 90.625 1280 55 22 18 1284 111341163 111339936 0.000000e+00 1639.0
11 TraesCS7D01G192700 chr7B 89.074 659 52 12 2999 3646 111338000 111337351 0.000000e+00 800.0
12 TraesCS7D01G192700 chr7B 91.985 262 13 1 1368 1629 111339885 111339632 9.620000e-96 361.0
13 TraesCS7D01G192700 chr6A 86.567 67 7 2 2548 2613 521649826 521649891 5.050000e-09 73.1
14 TraesCS7D01G192700 chr6D 85.075 67 8 2 2548 2613 379338195 379338130 2.350000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G192700 chr7D 148265596 148269241 3645 True 6734.000000 6734 100.000000 1 3646 1 chr7D.!!$R1 3645
1 TraesCS7D01G192700 chr7D 148152091 148153095 1004 True 239.500000 303 76.191500 1643 2646 2 chr7D.!!$R2 1003
2 TraesCS7D01G192700 chr7A 149421594 149427100 5506 True 1484.333333 2712 91.550667 263 3646 3 chr7A.!!$R4 3383
3 TraesCS7D01G192700 chr7A 149306293 149306958 665 True 470.000000 470 79.821000 1856 2507 1 chr7A.!!$R1 651
4 TraesCS7D01G192700 chr7B 111337351 111341163 3812 True 1153.500000 1814 91.148000 18 3646 4 chr7B.!!$R1 3628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
562 572 0.390603 CGTACATCAACCCTGCGGAA 60.391 55.0 0.00 0.0 0.0 4.30 F
1384 1424 0.026803 CGGTAAGCGCATTTGAGAGC 59.973 55.0 11.47 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1852 1900 0.103208 CTCGGCCTACACCATGAGTC 59.897 60.0 0.0 0.0 0.0 3.36 R
2993 3112 0.806241 GAAAATCCGTAAAGCCCGCA 59.194 50.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.764128 TGTGCCCCCGAGGATCTC 60.764 66.667 0.00 0.00 38.24 2.75
41 42 1.262824 CCTAGCGCTCGAATTCGACG 61.263 60.000 30.62 30.62 44.22 5.12
43 44 0.588233 TAGCGCTCGAATTCGACGAC 60.588 55.000 34.99 28.40 44.22 4.34
57 58 3.740397 CGACGGCCGGAGTACACA 61.740 66.667 31.76 0.00 33.91 3.72
83 84 2.809601 CGGCGTGTTCCTTCTCCG 60.810 66.667 0.00 0.00 0.00 4.63
105 106 0.678950 GAGGTAGCCAGAGCCTCATC 59.321 60.000 5.08 0.00 45.93 2.92
110 111 2.100128 AGCCAGAGCCTCATCTACAT 57.900 50.000 0.00 0.00 41.25 2.29
137 138 5.276348 GCAATTTCAAAGTTTTGTCGTCCAG 60.276 40.000 4.67 0.00 39.18 3.86
181 182 6.574350 CCTAACTAAGATTCCACGAGTCAAT 58.426 40.000 0.00 0.00 0.00 2.57
234 235 6.364976 CGTATTTGGTCCCATTTCAAGTTTTC 59.635 38.462 0.00 0.00 0.00 2.29
267 268 1.034838 GCCCAATGCATACCGACCAA 61.035 55.000 0.00 0.00 40.77 3.67
296 297 0.824182 TACACCCAAACAAAGCCCGG 60.824 55.000 0.00 0.00 0.00 5.73
298 299 2.203567 CCCAAACAAAGCCCGGGA 60.204 61.111 29.31 0.00 39.44 5.14
299 300 1.834822 CCCAAACAAAGCCCGGGAA 60.835 57.895 29.31 0.00 39.44 3.97
300 301 1.403687 CCCAAACAAAGCCCGGGAAA 61.404 55.000 29.31 0.00 39.44 3.13
334 336 2.034999 TTTGGACCCCGACCATGC 59.965 61.111 0.00 0.00 37.26 4.06
555 565 4.753107 TCTTTTTCACTCGTACATCAACCC 59.247 41.667 0.00 0.00 0.00 4.11
557 567 3.313012 TTCACTCGTACATCAACCCTG 57.687 47.619 0.00 0.00 0.00 4.45
562 572 0.390603 CGTACATCAACCCTGCGGAA 60.391 55.000 0.00 0.00 0.00 4.30
563 573 1.084289 GTACATCAACCCTGCGGAAC 58.916 55.000 0.00 0.00 0.00 3.62
641 658 3.442167 AGCGCGCATCATGCCAAA 61.442 55.556 35.10 0.00 41.12 3.28
671 696 7.893658 TCTTCACCGAGAAAATTAGAAGTACT 58.106 34.615 0.00 0.00 35.40 2.73
711 736 5.650703 ACTCCAAAATATTAACGGACCAAGG 59.349 40.000 0.00 0.00 0.00 3.61
712 737 4.399934 TCCAAAATATTAACGGACCAAGGC 59.600 41.667 0.00 0.00 0.00 4.35
713 738 4.401202 CCAAAATATTAACGGACCAAGGCT 59.599 41.667 0.00 0.00 0.00 4.58
714 739 5.591067 CCAAAATATTAACGGACCAAGGCTA 59.409 40.000 0.00 0.00 0.00 3.93
715 740 6.238648 CCAAAATATTAACGGACCAAGGCTAG 60.239 42.308 0.00 0.00 0.00 3.42
716 741 2.327200 ATTAACGGACCAAGGCTAGC 57.673 50.000 6.04 6.04 0.00 3.42
717 742 0.978151 TTAACGGACCAAGGCTAGCA 59.022 50.000 18.24 0.00 0.00 3.49
757 785 1.807495 CTAGCTAGCGTGGCTACCCC 61.807 65.000 8.05 0.00 40.44 4.95
758 786 4.587189 GCTAGCGTGGCTACCCCG 62.587 72.222 0.00 0.00 40.44 5.73
759 787 3.912907 CTAGCGTGGCTACCCCGG 61.913 72.222 0.00 0.00 40.44 5.73
874 902 1.077501 CTGACCAATCACCGGCCAT 60.078 57.895 0.00 0.00 0.00 4.40
896 924 1.405105 GTCAGCCAAAGCAGAAACACA 59.595 47.619 0.00 0.00 43.56 3.72
923 951 2.964978 CCCTTCAAAAGCTGGCCG 59.035 61.111 0.00 0.00 0.00 6.13
963 991 2.850786 CTAGAGCGTCGCGTCTGCAA 62.851 60.000 21.72 7.88 42.97 4.08
976 1004 3.238441 CGTCTGCAAGTAACTGAGAGAC 58.762 50.000 0.00 0.00 33.76 3.36
984 1012 5.182380 GCAAGTAACTGAGAGACTAGTCTGT 59.818 44.000 29.84 25.71 40.61 3.41
1176 1204 3.358076 CTCGTCCCGGAGCTTGACC 62.358 68.421 0.73 0.00 0.00 4.02
1243 1271 3.385384 CCCTCGACCTGAGCAGCA 61.385 66.667 0.00 0.00 43.82 4.41
1278 1306 1.514811 GACGACGATCAAAGCGATGAG 59.485 52.381 0.00 0.00 33.17 2.90
1288 1316 3.567797 GCGATGAGCCAGCGTTCC 61.568 66.667 13.01 0.00 45.34 3.62
1289 1317 2.892425 CGATGAGCCAGCGTTCCC 60.892 66.667 4.92 0.00 38.50 3.97
1290 1318 2.586792 GATGAGCCAGCGTTCCCT 59.413 61.111 0.00 0.00 0.00 4.20
1291 1319 1.817099 GATGAGCCAGCGTTCCCTG 60.817 63.158 0.00 0.00 0.00 4.45
1292 1320 3.984193 ATGAGCCAGCGTTCCCTGC 62.984 63.158 0.00 0.00 0.00 4.85
1300 1328 4.351938 CGTTCCCTGCGGACGACA 62.352 66.667 0.00 0.00 38.14 4.35
1301 1329 2.432628 GTTCCCTGCGGACGACAG 60.433 66.667 0.00 2.70 38.14 3.51
1302 1330 4.373116 TTCCCTGCGGACGACAGC 62.373 66.667 2.81 2.81 38.14 4.40
1319 1347 2.505777 CGTGACGCCTGAGCAGAG 60.506 66.667 0.00 0.00 39.83 3.35
1320 1348 2.813042 GTGACGCCTGAGCAGAGC 60.813 66.667 0.00 0.43 39.83 4.09
1321 1349 3.305516 TGACGCCTGAGCAGAGCA 61.306 61.111 0.00 0.00 39.83 4.26
1322 1350 2.813042 GACGCCTGAGCAGAGCAC 60.813 66.667 0.00 0.00 39.83 4.40
1384 1424 0.026803 CGGTAAGCGCATTTGAGAGC 59.973 55.000 11.47 0.00 0.00 4.09
1390 1430 1.133253 CGCATTTGAGAGCACGGTG 59.867 57.895 3.15 3.15 0.00 4.94
1401 1441 2.677971 GCACGGTGCTGTCGATATT 58.322 52.632 25.08 0.00 40.96 1.28
1402 1442 0.301687 GCACGGTGCTGTCGATATTG 59.698 55.000 25.08 0.00 40.96 1.90
1403 1443 0.930310 CACGGTGCTGTCGATATTGG 59.070 55.000 0.00 0.00 0.00 3.16
1406 1446 0.179045 GGTGCTGTCGATATTGGCCT 60.179 55.000 3.32 0.00 0.00 5.19
1451 1491 2.579207 TGATAACTCTGGCTACGTGC 57.421 50.000 0.00 0.00 41.94 5.34
1474 1514 1.148157 CTTCATGCGTAGGTGAGGCG 61.148 60.000 0.00 0.00 42.06 5.52
1839 1887 2.989840 CAAGTGACGATGAAGACTGACC 59.010 50.000 0.00 0.00 0.00 4.02
1840 1888 2.520069 AGTGACGATGAAGACTGACCT 58.480 47.619 0.00 0.00 0.00 3.85
1842 1890 3.440872 AGTGACGATGAAGACTGACCTAC 59.559 47.826 0.00 0.00 0.00 3.18
1843 1891 3.190744 GTGACGATGAAGACTGACCTACA 59.809 47.826 0.00 0.00 0.00 2.74
1844 1892 4.017126 TGACGATGAAGACTGACCTACAT 58.983 43.478 0.00 0.00 0.00 2.29
1845 1893 4.142381 TGACGATGAAGACTGACCTACATG 60.142 45.833 0.00 0.00 0.00 3.21
1846 1894 3.131223 ACGATGAAGACTGACCTACATGG 59.869 47.826 0.00 0.00 42.93 3.66
2120 2182 0.034896 ACTGGTTCTTCCGCGTCAAT 59.965 50.000 4.92 0.00 39.52 2.57
2138 2200 2.641815 CAATTATCTCTGGGAGGGAGGG 59.358 54.545 0.00 0.00 0.00 4.30
2285 2347 1.216710 CAGCCTCGTCACCTTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
2288 2350 1.677966 CCTCGTCACCTTCCTCCGA 60.678 63.158 0.00 0.00 0.00 4.55
2393 2459 1.227468 GAGCATGGAGAGCATCGCA 60.227 57.895 0.00 0.00 42.67 5.10
2524 2605 1.405526 CCCCGACAATCACTTCGACAT 60.406 52.381 0.00 0.00 37.43 3.06
2778 2882 3.564511 CACCGCAAAAATTGTACTCCTG 58.435 45.455 0.00 0.00 0.00 3.86
2786 2890 6.145534 GCAAAAATTGTACTCCTGCTTAAACC 59.854 38.462 0.00 0.00 0.00 3.27
2787 2891 7.433680 CAAAAATTGTACTCCTGCTTAAACCT 58.566 34.615 0.00 0.00 0.00 3.50
2821 2925 3.855689 TGTACTACTTACGAAGTGGCC 57.144 47.619 0.00 0.00 45.73 5.36
2843 2947 4.082571 CCCATGATTCTGAAACTTGACACC 60.083 45.833 12.94 0.00 0.00 4.16
2898 3005 2.673368 CACTCTCATAAACTCGCCAACC 59.327 50.000 0.00 0.00 0.00 3.77
2902 3009 5.092554 TCTCATAAACTCGCCAACCATAA 57.907 39.130 0.00 0.00 0.00 1.90
2957 3065 7.610580 AAAAATGAGTGAATTTCAGGGGTAA 57.389 32.000 0.00 0.00 0.00 2.85
2960 3068 7.797121 AATGAGTGAATTTCAGGGGTAATTT 57.203 32.000 0.00 0.00 0.00 1.82
2961 3069 8.893563 AATGAGTGAATTTCAGGGGTAATTTA 57.106 30.769 0.00 0.00 0.00 1.40
2962 3070 8.893563 ATGAGTGAATTTCAGGGGTAATTTAA 57.106 30.769 0.00 0.00 0.00 1.52
3007 3424 3.132925 GTTTATATGCGGGCTTTACGGA 58.867 45.455 0.00 0.00 35.80 4.69
3037 3454 4.094294 GCGTACAATCTCACTTATTTGCCA 59.906 41.667 0.00 0.00 0.00 4.92
3151 3572 9.260002 GAGTAACAAAATGATTCAACAACCATT 57.740 29.630 0.00 0.00 0.00 3.16
3544 6173 8.978874 TGCAAAGATATATTGGACACTGTAAT 57.021 30.769 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.554036 GATCCTCGGGGGCACAGC 62.554 72.222 0.00 0.00 34.39 4.40
4 5 2.765807 AGATCCTCGGGGGCACAG 60.766 66.667 0.00 0.00 34.39 3.66
5 6 2.764128 GAGATCCTCGGGGGCACA 60.764 66.667 0.00 0.00 34.39 4.57
6 7 2.658321 TAGGAGATCCTCGGGGGCAC 62.658 65.000 0.00 0.00 44.77 5.01
7 8 2.373338 CTAGGAGATCCTCGGGGGCA 62.373 65.000 0.00 0.00 44.77 5.36
8 9 1.608046 CTAGGAGATCCTCGGGGGC 60.608 68.421 0.00 0.00 44.77 5.80
9 10 1.608046 GCTAGGAGATCCTCGGGGG 60.608 68.421 0.00 0.00 44.77 5.40
10 11 1.974343 CGCTAGGAGATCCTCGGGG 60.974 68.421 4.22 0.00 44.77 5.73
11 12 2.631580 GCGCTAGGAGATCCTCGGG 61.632 68.421 4.22 8.79 44.77 5.14
12 13 1.582610 GAGCGCTAGGAGATCCTCGG 61.583 65.000 11.50 1.25 44.77 4.63
13 14 1.873165 GAGCGCTAGGAGATCCTCG 59.127 63.158 11.50 5.16 44.77 4.63
14 15 0.604243 TCGAGCGCTAGGAGATCCTC 60.604 60.000 11.50 0.00 44.77 3.71
16 17 0.885196 ATTCGAGCGCTAGGAGATCC 59.115 55.000 11.50 0.00 0.00 3.36
41 42 2.181021 CTGTGTACTCCGGCCGTC 59.819 66.667 26.12 9.31 0.00 4.79
43 44 4.814294 GGCTGTGTACTCCGGCCG 62.814 72.222 21.04 21.04 44.01 6.13
69 70 2.809601 CGCCGGAGAAGGAACACG 60.810 66.667 5.05 0.00 0.00 4.49
110 111 6.419413 GGACGACAAAACTTTGAAATTGCATA 59.581 34.615 9.12 0.00 40.55 3.14
129 130 3.040147 TCCAAATTCTGTCTGGACGAC 57.960 47.619 0.00 0.00 43.14 4.34
137 138 3.823304 AGGCTTCAGTTCCAAATTCTGTC 59.177 43.478 0.00 0.00 0.00 3.51
181 182 4.023107 TCGTTGTTTGGTTGTTCACTGAAA 60.023 37.500 0.00 0.00 0.00 2.69
216 217 4.040339 ACCATGAAAACTTGAAATGGGACC 59.960 41.667 0.00 0.00 41.76 4.46
218 219 4.898265 TCACCATGAAAACTTGAAATGGGA 59.102 37.500 0.00 0.00 41.76 4.37
234 235 3.243636 GCATTGGGCTAGAATTCACCATG 60.244 47.826 8.44 7.86 40.25 3.66
267 268 4.380843 TGTTTGGGTGTATGAACTGGAT 57.619 40.909 0.00 0.00 0.00 3.41
343 345 1.894466 TCTTGGGGAAATGACGACGTA 59.106 47.619 0.00 0.00 0.00 3.57
438 443 2.184020 TTGTGTCATGGCCTCGGGAG 62.184 60.000 3.32 0.00 0.00 4.30
464 474 2.788786 GTCATGCGGTTGTTTTGACTTG 59.211 45.455 0.00 0.00 35.09 3.16
641 658 6.531021 TCTAATTTTCTCGGTGAAGAAACCT 58.469 36.000 0.00 0.00 43.18 3.50
671 696 3.086282 TGGAGTGAGCAGTTACGTGATA 58.914 45.455 0.00 0.00 0.00 2.15
711 736 2.096496 CACCAAACTGCATAGTGCTAGC 59.904 50.000 8.10 8.10 45.31 3.42
712 737 3.599343 TCACCAAACTGCATAGTGCTAG 58.401 45.455 3.41 2.38 45.31 3.42
713 738 3.694043 TCACCAAACTGCATAGTGCTA 57.306 42.857 3.41 0.00 45.31 3.49
714 739 2.566833 TCACCAAACTGCATAGTGCT 57.433 45.000 3.41 0.00 45.31 4.40
715 740 2.098117 GGATCACCAAACTGCATAGTGC 59.902 50.000 0.00 0.00 38.95 4.40
716 741 3.346315 TGGATCACCAAACTGCATAGTG 58.654 45.455 0.00 0.00 43.91 2.74
717 742 3.719268 TGGATCACCAAACTGCATAGT 57.281 42.857 0.00 0.00 43.91 2.12
757 785 2.336809 GAGCTGTCGATAGGGCCG 59.663 66.667 11.42 0.00 0.00 6.13
758 786 2.134287 TGGAGCTGTCGATAGGGCC 61.134 63.158 11.42 0.00 0.00 5.80
759 787 1.068250 GTGGAGCTGTCGATAGGGC 59.932 63.158 11.42 0.00 0.00 5.19
760 788 1.043116 TGGTGGAGCTGTCGATAGGG 61.043 60.000 11.42 0.00 0.00 3.53
761 789 0.824109 TTGGTGGAGCTGTCGATAGG 59.176 55.000 11.42 0.00 0.00 2.57
762 790 2.271800 GTTTGGTGGAGCTGTCGATAG 58.728 52.381 4.57 4.57 0.00 2.08
763 791 1.066430 GGTTTGGTGGAGCTGTCGATA 60.066 52.381 0.00 0.00 0.00 2.92
764 792 0.321653 GGTTTGGTGGAGCTGTCGAT 60.322 55.000 0.00 0.00 0.00 3.59
765 793 1.070786 GGTTTGGTGGAGCTGTCGA 59.929 57.895 0.00 0.00 0.00 4.20
840 868 1.135315 CAGCTGACGCGGGAATTTG 59.865 57.895 8.42 0.00 42.32 2.32
874 902 2.098614 TGTTTCTGCTTTGGCTGACAA 58.901 42.857 0.00 0.00 44.06 3.18
923 951 1.542915 TCACAGTACTAGGTTGGCGTC 59.457 52.381 0.00 0.00 0.00 5.19
963 991 6.116711 TCACAGACTAGTCTCTCAGTTACT 57.883 41.667 22.76 0.00 37.98 2.24
976 1004 3.667497 TGCAAGTTCCTCACAGACTAG 57.333 47.619 0.00 0.00 0.00 2.57
984 1012 1.179152 CCATGCATGCAAGTTCCTCA 58.821 50.000 26.68 0.00 0.00 3.86
1085 1113 1.009389 GGACTTGACGTTCCTCTGCG 61.009 60.000 0.00 0.00 0.00 5.18
1243 1271 0.397675 TCGTCATCCTCTGGCATCCT 60.398 55.000 0.00 0.00 0.00 3.24
1302 1330 2.505777 CTCTGCTCAGGCGTCACG 60.506 66.667 0.00 0.00 42.25 4.35
1303 1331 2.813042 GCTCTGCTCAGGCGTCAC 60.813 66.667 0.00 0.00 42.25 3.67
1304 1332 3.305516 TGCTCTGCTCAGGCGTCA 61.306 61.111 0.00 0.00 42.25 4.35
1305 1333 2.813042 GTGCTCTGCTCAGGCGTC 60.813 66.667 0.00 0.00 42.25 5.19
1306 1334 3.619767 TGTGCTCTGCTCAGGCGT 61.620 61.111 0.00 0.00 42.25 5.68
1307 1335 3.117171 GTGTGCTCTGCTCAGGCG 61.117 66.667 0.00 0.00 42.25 5.52
1308 1336 2.745492 GGTGTGCTCTGCTCAGGC 60.745 66.667 0.00 0.93 32.70 4.85
1309 1337 1.375652 CAGGTGTGCTCTGCTCAGG 60.376 63.158 0.00 0.00 32.70 3.86
1310 1338 4.280676 CAGGTGTGCTCTGCTCAG 57.719 61.111 0.00 0.00 32.70 3.35
1384 1424 0.930310 CCAATATCGACAGCACCGTG 59.070 55.000 0.00 0.00 0.00 4.94
1390 1430 2.135933 GTACAGGCCAATATCGACAGC 58.864 52.381 5.01 0.00 0.00 4.40
1401 1441 4.673298 CGGTGCACGTACAGGCCA 62.673 66.667 11.45 0.00 37.93 5.36
1403 1443 4.675029 ACCGGTGCACGTACAGGC 62.675 66.667 6.12 0.00 39.19 4.85
1406 1446 0.876777 CTCAAACCGGTGCACGTACA 60.877 55.000 8.52 0.00 42.24 2.90
1451 1491 0.108186 TCACCTACGCATGAAGCAGG 60.108 55.000 0.00 1.30 46.13 4.85
1474 1514 4.166888 TCCTCGAGCTGCATGGCC 62.167 66.667 6.99 0.00 0.00 5.36
1738 1778 3.073735 AGGCAGAGCAGGGAGTCG 61.074 66.667 0.00 0.00 0.00 4.18
1808 1848 6.430308 TCTTCATCGTCACTTGACTACTTACT 59.570 38.462 7.74 0.00 42.66 2.24
1809 1849 6.523893 GTCTTCATCGTCACTTGACTACTTAC 59.476 42.308 7.74 0.00 42.66 2.34
1849 1897 0.839946 GGCCTACACCATGAGTCCAT 59.160 55.000 0.00 0.00 0.00 3.41
1850 1898 1.613317 CGGCCTACACCATGAGTCCA 61.613 60.000 0.00 0.00 0.00 4.02
1851 1899 1.144057 CGGCCTACACCATGAGTCC 59.856 63.158 0.00 0.00 0.00 3.85
1852 1900 0.103208 CTCGGCCTACACCATGAGTC 59.897 60.000 0.00 0.00 0.00 3.36
1853 1901 1.330655 CCTCGGCCTACACCATGAGT 61.331 60.000 0.00 0.00 0.00 3.41
1855 1903 2.731571 GCCTCGGCCTACACCATGA 61.732 63.158 0.00 0.00 34.56 3.07
1856 1904 2.203070 GCCTCGGCCTACACCATG 60.203 66.667 0.00 0.00 34.56 3.66
2120 2182 0.104934 GCCCTCCCTCCCAGAGATAA 60.105 60.000 0.00 0.00 32.86 1.75
2285 2347 3.136123 TCGGGCGAGTAGGTTCGG 61.136 66.667 0.00 0.00 40.79 4.30
2288 2350 2.283388 TGGTCGGGCGAGTAGGTT 60.283 61.111 0.00 0.00 0.00 3.50
2321 2383 4.124351 TAGCCGCCGTCGAACCAG 62.124 66.667 0.00 0.00 38.10 4.00
2393 2459 1.692042 CACCCTCCTCAGCTCCCAT 60.692 63.158 0.00 0.00 0.00 4.00
2524 2605 1.609501 CCGTTCCTCCTCCACCTGA 60.610 63.158 0.00 0.00 0.00 3.86
2741 2843 4.255301 TGCGGTGGGTTTTATACAGTTAG 58.745 43.478 0.00 0.00 0.00 2.34
2807 2911 0.981183 TCATGGGCCACTTCGTAAGT 59.019 50.000 9.28 0.00 44.06 2.24
2808 2912 2.332063 ATCATGGGCCACTTCGTAAG 57.668 50.000 9.28 0.00 0.00 2.34
2809 2913 2.238646 AGAATCATGGGCCACTTCGTAA 59.761 45.455 9.28 0.00 0.00 3.18
2821 2925 4.082571 GGGTGTCAAGTTTCAGAATCATGG 60.083 45.833 0.00 0.00 0.00 3.66
2865 2972 8.115490 AGTTTATGAGAGTGCTTGCTAAATTT 57.885 30.769 0.00 0.00 0.00 1.82
2935 3043 7.797121 AATTACCCCTGAAATTCACTCATTT 57.203 32.000 0.00 0.00 0.00 2.32
2936 3044 7.797121 AAATTACCCCTGAAATTCACTCATT 57.203 32.000 0.00 0.00 0.00 2.57
2937 3045 8.893563 TTAAATTACCCCTGAAATTCACTCAT 57.106 30.769 0.00 0.00 0.00 2.90
2938 3046 7.947890 ACTTAAATTACCCCTGAAATTCACTCA 59.052 33.333 0.00 0.00 0.00 3.41
2974 3093 6.238925 GCCCGCATATAAACCTGAAGTTATTT 60.239 38.462 0.00 0.00 37.88 1.40
2993 3112 0.806241 GAAAATCCGTAAAGCCCGCA 59.194 50.000 0.00 0.00 0.00 5.69
2994 3113 1.092348 AGAAAATCCGTAAAGCCCGC 58.908 50.000 0.00 0.00 0.00 6.13
3007 3424 7.849804 ATAAGTGAGATTGTACGCAGAAAAT 57.150 32.000 0.00 0.00 0.00 1.82
3037 3454 8.883731 CCGTATCTTCATTTAACTTGATGAACT 58.116 33.333 7.06 0.00 37.35 3.01
3390 6009 7.504238 TGTTTGAAAGGTTGTGTATCTGGTAAT 59.496 33.333 0.00 0.00 0.00 1.89
3468 6097 4.082679 CGTATGAGAGGGGTAGCTATGTTC 60.083 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.