Multiple sequence alignment - TraesCS7D01G192500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G192500 chr7D 100.000 2950 0 0 1 2950 148159787 148162736 0.000000e+00 5448.0
1 TraesCS7D01G192500 chr7D 82.092 631 80 19 2244 2866 54844757 54845362 2.620000e-140 508.0
2 TraesCS7D01G192500 chr7D 95.349 43 2 0 2896 2938 155302891 155302933 5.280000e-08 69.4
3 TraesCS7D01G192500 chr7B 90.642 1464 93 20 806 2248 111317087 111318527 0.000000e+00 1905.0
4 TraesCS7D01G192500 chr7A 93.388 847 53 3 1401 2247 149315981 149316824 0.000000e+00 1251.0
5 TraesCS7D01G192500 chr7A 85.287 435 30 5 883 1316 149313051 149313452 4.550000e-113 418.0
6 TraesCS7D01G192500 chr7A 87.572 346 34 4 867 1212 149315535 149315871 2.760000e-105 392.0
7 TraesCS7D01G192500 chr7A 85.542 249 28 5 471 713 149315188 149315434 1.360000e-63 254.0
8 TraesCS7D01G192500 chr2D 90.340 559 42 9 2250 2802 533025667 533026219 0.000000e+00 723.0
9 TraesCS7D01G192500 chr2D 85.795 528 62 10 2273 2797 566724942 566725459 5.560000e-152 547.0
10 TraesCS7D01G192500 chr2D 93.007 143 10 0 2796 2938 533026256 533026398 2.980000e-50 209.0
11 TraesCS7D01G192500 chr2D 96.154 52 2 0 2896 2947 73740375 73740426 5.240000e-13 86.1
12 TraesCS7D01G192500 chr6A 87.500 632 60 16 2247 2868 16973014 16973636 0.000000e+00 712.0
13 TraesCS7D01G192500 chr6A 80.672 119 20 3 2833 2950 16973689 16973805 4.050000e-14 89.8
14 TraesCS7D01G192500 chr6B 85.103 631 77 13 2244 2866 533817813 533818434 1.930000e-176 628.0
15 TraesCS7D01G192500 chr6B 89.781 137 13 1 2796 2932 533818408 533818543 1.090000e-39 174.0
16 TraesCS7D01G192500 chr2B 86.176 557 50 7 2250 2802 588817703 588818236 7.090000e-161 577.0
17 TraesCS7D01G192500 chr1D 84.016 513 62 16 2250 2747 79993470 79992963 2.660000e-130 475.0
18 TraesCS7D01G192500 chr1D 78.090 712 118 31 2243 2932 82336587 82335892 1.640000e-112 416.0
19 TraesCS7D01G192500 chr1D 83.974 156 25 0 1000 1155 63543582 63543737 1.830000e-32 150.0
20 TraesCS7D01G192500 chr1D 94.231 52 3 0 2898 2949 74290522 74290471 2.440000e-11 80.5
21 TraesCS7D01G192500 chr1B 83.883 515 58 20 2250 2747 131547482 131546976 4.450000e-128 468.0
22 TraesCS7D01G192500 chr1B 85.000 160 24 0 996 1155 101519241 101519400 2.350000e-36 163.0
23 TraesCS7D01G192500 chr1B 84.713 157 24 0 999 1155 101591798 101591642 1.090000e-34 158.0
24 TraesCS7D01G192500 chr5D 85.315 429 57 6 2250 2675 59847681 59847256 3.490000e-119 438.0
25 TraesCS7D01G192500 chr5D 83.832 167 23 4 996 1159 371872974 371872809 3.940000e-34 156.0
26 TraesCS7D01G192500 chr1A 85.350 157 23 0 999 1155 61575844 61576000 2.350000e-36 163.0
27 TraesCS7D01G192500 chr1A 82.803 157 27 0 999 1155 61713671 61713827 1.100000e-29 141.0
28 TraesCS7D01G192500 chr2A 90.909 55 5 0 2896 2950 506291 506345 1.130000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G192500 chr7D 148159787 148162736 2949 False 5448.00 5448 100.00000 1 2950 1 chr7D.!!$F2 2949
1 TraesCS7D01G192500 chr7D 54844757 54845362 605 False 508.00 508 82.09200 2244 2866 1 chr7D.!!$F1 622
2 TraesCS7D01G192500 chr7B 111317087 111318527 1440 False 1905.00 1905 90.64200 806 2248 1 chr7B.!!$F1 1442
3 TraesCS7D01G192500 chr7A 149313051 149316824 3773 False 578.75 1251 87.94725 471 2247 4 chr7A.!!$F1 1776
4 TraesCS7D01G192500 chr2D 566724942 566725459 517 False 547.00 547 85.79500 2273 2797 1 chr2D.!!$F2 524
5 TraesCS7D01G192500 chr2D 533025667 533026398 731 False 466.00 723 91.67350 2250 2938 2 chr2D.!!$F3 688
6 TraesCS7D01G192500 chr6A 16973014 16973805 791 False 400.90 712 84.08600 2247 2950 2 chr6A.!!$F1 703
7 TraesCS7D01G192500 chr6B 533817813 533818543 730 False 401.00 628 87.44200 2244 2932 2 chr6B.!!$F1 688
8 TraesCS7D01G192500 chr2B 588817703 588818236 533 False 577.00 577 86.17600 2250 2802 1 chr2B.!!$F1 552
9 TraesCS7D01G192500 chr1D 79992963 79993470 507 True 475.00 475 84.01600 2250 2747 1 chr1D.!!$R2 497
10 TraesCS7D01G192500 chr1D 82335892 82336587 695 True 416.00 416 78.09000 2243 2932 1 chr1D.!!$R3 689
11 TraesCS7D01G192500 chr1B 131546976 131547482 506 True 468.00 468 83.88300 2250 2747 1 chr1B.!!$R2 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 668 0.029567 CCATAGTCGACGACTCTGCC 59.97 60.0 32.32 3.06 42.4 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2609 5160 0.037697 TGCACATCGACGGCTAAACT 60.038 50.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.593875 TTAACATTATTTTTCACATGCAGGC 57.406 32.000 0.00 0.00 0.00 4.85
64 65 4.175516 ACATTATTTTTCACATGCAGGCG 58.824 39.130 0.00 0.00 0.00 5.52
65 66 2.276472 TATTTTTCACATGCAGGCGC 57.724 45.000 0.00 0.00 39.24 6.53
76 77 4.746951 CAGGCGCACGTGCACATG 62.747 66.667 37.03 31.45 42.21 3.21
79 80 4.450122 GCGCACGTGCACATGGAG 62.450 66.667 37.03 21.20 42.21 3.86
80 81 3.043713 CGCACGTGCACATGGAGT 61.044 61.111 37.03 1.38 42.21 3.85
81 82 2.863153 GCACGTGCACATGGAGTC 59.137 61.111 34.52 0.76 41.59 3.36
82 83 3.015293 GCACGTGCACATGGAGTCG 62.015 63.158 34.52 0.88 41.59 4.18
83 84 1.372872 CACGTGCACATGGAGTCGA 60.373 57.895 18.64 0.00 0.00 4.20
84 85 0.943835 CACGTGCACATGGAGTCGAA 60.944 55.000 18.64 0.00 0.00 3.71
85 86 0.037326 ACGTGCACATGGAGTCGAAT 60.037 50.000 18.64 0.00 0.00 3.34
86 87 1.078709 CGTGCACATGGAGTCGAATT 58.921 50.000 18.64 0.00 0.00 2.17
87 88 1.201954 CGTGCACATGGAGTCGAATTG 60.202 52.381 18.64 0.00 0.00 2.32
88 89 1.131126 GTGCACATGGAGTCGAATTGG 59.869 52.381 13.17 0.00 0.00 3.16
89 90 1.003003 TGCACATGGAGTCGAATTGGA 59.997 47.619 0.00 0.00 0.00 3.53
90 91 2.292267 GCACATGGAGTCGAATTGGAT 58.708 47.619 0.00 0.00 0.00 3.41
91 92 2.684881 GCACATGGAGTCGAATTGGATT 59.315 45.455 0.00 0.00 0.00 3.01
92 93 3.129287 GCACATGGAGTCGAATTGGATTT 59.871 43.478 0.00 0.00 0.00 2.17
93 94 4.380867 GCACATGGAGTCGAATTGGATTTT 60.381 41.667 0.00 0.00 0.00 1.82
94 95 5.335127 CACATGGAGTCGAATTGGATTTTC 58.665 41.667 0.00 0.00 0.00 2.29
95 96 4.094887 ACATGGAGTCGAATTGGATTTTCG 59.905 41.667 0.00 0.00 45.51 3.46
96 97 3.006940 TGGAGTCGAATTGGATTTTCGG 58.993 45.455 6.04 0.00 44.55 4.30
97 98 2.354821 GGAGTCGAATTGGATTTTCGGG 59.645 50.000 6.04 0.00 44.55 5.14
98 99 3.267483 GAGTCGAATTGGATTTTCGGGA 58.733 45.455 6.04 0.00 44.55 5.14
99 100 3.681593 AGTCGAATTGGATTTTCGGGAA 58.318 40.909 6.04 0.00 44.55 3.97
100 101 4.076394 AGTCGAATTGGATTTTCGGGAAA 58.924 39.130 6.04 0.00 44.55 3.13
101 102 4.156008 AGTCGAATTGGATTTTCGGGAAAG 59.844 41.667 6.04 0.00 44.55 2.62
102 103 4.155280 GTCGAATTGGATTTTCGGGAAAGA 59.845 41.667 6.04 0.00 44.55 2.52
103 104 4.762765 TCGAATTGGATTTTCGGGAAAGAA 59.237 37.500 6.04 0.00 44.55 2.52
104 105 5.417580 TCGAATTGGATTTTCGGGAAAGAAT 59.582 36.000 6.04 0.00 44.55 2.40
105 106 5.743872 CGAATTGGATTTTCGGGAAAGAATC 59.256 40.000 0.00 0.00 41.62 2.52
106 107 6.404734 CGAATTGGATTTTCGGGAAAGAATCT 60.405 38.462 6.04 0.00 41.62 2.40
107 108 5.643379 TTGGATTTTCGGGAAAGAATCTG 57.357 39.130 6.04 0.00 0.00 2.90
108 109 4.662278 TGGATTTTCGGGAAAGAATCTGT 58.338 39.130 6.04 0.00 0.00 3.41
109 110 5.076873 TGGATTTTCGGGAAAGAATCTGTT 58.923 37.500 6.04 0.00 0.00 3.16
110 111 5.538433 TGGATTTTCGGGAAAGAATCTGTTT 59.462 36.000 6.04 0.00 0.00 2.83
111 112 6.041523 TGGATTTTCGGGAAAGAATCTGTTTT 59.958 34.615 6.04 0.00 0.00 2.43
112 113 6.929049 GGATTTTCGGGAAAGAATCTGTTTTT 59.071 34.615 6.04 0.00 0.00 1.94
147 148 9.912634 AACATTGTTGGATTTTCTACATAAGTG 57.087 29.630 0.15 0.00 0.00 3.16
148 149 8.028938 ACATTGTTGGATTTTCTACATAAGTGC 58.971 33.333 0.00 0.00 0.00 4.40
149 150 7.517614 TTGTTGGATTTTCTACATAAGTGCA 57.482 32.000 0.00 0.00 0.00 4.57
150 151 7.517614 TGTTGGATTTTCTACATAAGTGCAA 57.482 32.000 0.00 0.00 0.00 4.08
151 152 7.946207 TGTTGGATTTTCTACATAAGTGCAAA 58.054 30.769 0.00 0.00 27.85 3.68
152 153 8.584157 TGTTGGATTTTCTACATAAGTGCAAAT 58.416 29.630 0.00 0.00 27.85 2.32
153 154 9.423061 GTTGGATTTTCTACATAAGTGCAAATT 57.577 29.630 0.00 0.00 27.85 1.82
154 155 9.995003 TTGGATTTTCTACATAAGTGCAAATTT 57.005 25.926 0.00 0.00 0.00 1.82
155 156 9.995003 TGGATTTTCTACATAAGTGCAAATTTT 57.005 25.926 0.00 0.00 0.00 1.82
160 161 8.984891 TTCTACATAAGTGCAAATTTTCATGG 57.015 30.769 0.00 0.00 0.00 3.66
161 162 8.347004 TCTACATAAGTGCAAATTTTCATGGA 57.653 30.769 0.00 0.00 0.00 3.41
162 163 8.461222 TCTACATAAGTGCAAATTTTCATGGAG 58.539 33.333 0.00 0.00 0.00 3.86
163 164 7.230849 ACATAAGTGCAAATTTTCATGGAGA 57.769 32.000 0.00 0.00 0.00 3.71
164 165 7.669427 ACATAAGTGCAAATTTTCATGGAGAA 58.331 30.769 0.00 0.00 0.00 2.87
165 166 8.149647 ACATAAGTGCAAATTTTCATGGAGAAA 58.850 29.630 0.00 0.00 44.21 2.52
179 180 7.333528 TCATGGAGAAAAACATACCTAATGC 57.666 36.000 0.00 0.00 39.39 3.56
180 181 7.118723 TCATGGAGAAAAACATACCTAATGCT 58.881 34.615 0.00 0.00 39.39 3.79
181 182 7.283127 TCATGGAGAAAAACATACCTAATGCTC 59.717 37.037 0.00 0.00 39.39 4.26
182 183 6.721318 TGGAGAAAAACATACCTAATGCTCT 58.279 36.000 0.00 0.00 39.39 4.09
183 184 6.599244 TGGAGAAAAACATACCTAATGCTCTG 59.401 38.462 0.00 0.00 39.39 3.35
184 185 6.823689 GGAGAAAAACATACCTAATGCTCTGA 59.176 38.462 0.00 0.00 39.39 3.27
185 186 7.336931 GGAGAAAAACATACCTAATGCTCTGAA 59.663 37.037 0.00 0.00 39.39 3.02
186 187 8.635765 AGAAAAACATACCTAATGCTCTGAAA 57.364 30.769 0.00 0.00 39.39 2.69
187 188 9.077885 AGAAAAACATACCTAATGCTCTGAAAA 57.922 29.630 0.00 0.00 39.39 2.29
188 189 9.691362 GAAAAACATACCTAATGCTCTGAAAAA 57.309 29.630 0.00 0.00 39.39 1.94
189 190 9.476202 AAAAACATACCTAATGCTCTGAAAAAC 57.524 29.630 0.00 0.00 39.39 2.43
190 191 7.759489 AACATACCTAATGCTCTGAAAAACA 57.241 32.000 0.00 0.00 39.39 2.83
191 192 7.759489 ACATACCTAATGCTCTGAAAAACAA 57.241 32.000 0.00 0.00 39.39 2.83
192 193 8.353423 ACATACCTAATGCTCTGAAAAACAAT 57.647 30.769 0.00 0.00 39.39 2.71
193 194 8.806146 ACATACCTAATGCTCTGAAAAACAATT 58.194 29.630 0.00 0.00 39.39 2.32
194 195 9.079833 CATACCTAATGCTCTGAAAAACAATTG 57.920 33.333 3.24 3.24 0.00 2.32
195 196 7.288810 ACCTAATGCTCTGAAAAACAATTGA 57.711 32.000 13.59 0.00 0.00 2.57
196 197 7.899973 ACCTAATGCTCTGAAAAACAATTGAT 58.100 30.769 13.59 0.00 0.00 2.57
197 198 9.023962 ACCTAATGCTCTGAAAAACAATTGATA 57.976 29.630 13.59 0.00 0.00 2.15
198 199 9.294030 CCTAATGCTCTGAAAAACAATTGATAC 57.706 33.333 13.59 0.00 0.00 2.24
200 201 8.976986 AATGCTCTGAAAAACAATTGATACTC 57.023 30.769 13.59 4.14 0.00 2.59
201 202 6.913170 TGCTCTGAAAAACAATTGATACTCC 58.087 36.000 13.59 0.00 0.00 3.85
202 203 6.489700 TGCTCTGAAAAACAATTGATACTCCA 59.510 34.615 13.59 2.18 0.00 3.86
203 204 7.014134 TGCTCTGAAAAACAATTGATACTCCAA 59.986 33.333 13.59 0.00 0.00 3.53
204 205 7.867403 GCTCTGAAAAACAATTGATACTCCAAA 59.133 33.333 13.59 0.00 0.00 3.28
205 206 9.748708 CTCTGAAAAACAATTGATACTCCAAAA 57.251 29.630 13.59 0.00 0.00 2.44
294 295 9.502091 TCATTTTTGTAGTTACTATTCAGCACT 57.498 29.630 0.00 0.00 0.00 4.40
297 298 8.896320 TTTTGTAGTTACTATTCAGCACTTGA 57.104 30.769 0.00 0.00 0.00 3.02
298 299 8.534333 TTTGTAGTTACTATTCAGCACTTGAG 57.466 34.615 0.00 0.00 37.07 3.02
299 300 7.462571 TGTAGTTACTATTCAGCACTTGAGA 57.537 36.000 0.00 0.00 37.07 3.27
300 301 8.067751 TGTAGTTACTATTCAGCACTTGAGAT 57.932 34.615 0.00 0.00 37.07 2.75
301 302 8.191446 TGTAGTTACTATTCAGCACTTGAGATC 58.809 37.037 0.00 0.00 37.07 2.75
302 303 7.416964 AGTTACTATTCAGCACTTGAGATCT 57.583 36.000 0.00 0.00 37.07 2.75
303 304 7.264221 AGTTACTATTCAGCACTTGAGATCTG 58.736 38.462 0.00 0.00 37.07 2.90
304 305 5.021033 ACTATTCAGCACTTGAGATCTGG 57.979 43.478 0.00 0.00 37.07 3.86
305 306 4.713814 ACTATTCAGCACTTGAGATCTGGA 59.286 41.667 0.00 0.00 37.07 3.86
306 307 4.774660 ATTCAGCACTTGAGATCTGGAT 57.225 40.909 0.00 0.00 37.07 3.41
307 308 4.564782 TTCAGCACTTGAGATCTGGATT 57.435 40.909 0.00 0.00 37.07 3.01
308 309 5.682234 TTCAGCACTTGAGATCTGGATTA 57.318 39.130 0.00 0.00 37.07 1.75
309 310 5.273674 TCAGCACTTGAGATCTGGATTAG 57.726 43.478 0.00 0.00 0.00 1.73
310 311 4.100653 TCAGCACTTGAGATCTGGATTAGG 59.899 45.833 0.00 0.00 0.00 2.69
311 312 4.100653 CAGCACTTGAGATCTGGATTAGGA 59.899 45.833 0.00 0.00 0.00 2.94
312 313 4.718774 AGCACTTGAGATCTGGATTAGGAA 59.281 41.667 0.00 0.00 0.00 3.36
313 314 5.190528 AGCACTTGAGATCTGGATTAGGAAA 59.809 40.000 0.00 0.00 0.00 3.13
314 315 5.882557 GCACTTGAGATCTGGATTAGGAAAA 59.117 40.000 0.00 0.00 0.00 2.29
315 316 6.183360 GCACTTGAGATCTGGATTAGGAAAAC 60.183 42.308 0.00 0.00 0.00 2.43
316 317 6.881065 CACTTGAGATCTGGATTAGGAAAACA 59.119 38.462 0.00 0.00 0.00 2.83
317 318 7.391554 CACTTGAGATCTGGATTAGGAAAACAA 59.608 37.037 0.00 0.00 0.00 2.83
318 319 8.112183 ACTTGAGATCTGGATTAGGAAAACAAT 58.888 33.333 0.00 0.00 0.00 2.71
319 320 8.884124 TTGAGATCTGGATTAGGAAAACAATT 57.116 30.769 0.00 0.00 0.00 2.32
320 321 8.884124 TGAGATCTGGATTAGGAAAACAATTT 57.116 30.769 0.00 0.00 0.00 1.82
321 322 8.742777 TGAGATCTGGATTAGGAAAACAATTTG 58.257 33.333 0.00 0.00 0.00 2.32
322 323 8.071177 AGATCTGGATTAGGAAAACAATTTGG 57.929 34.615 0.00 0.00 0.00 3.28
323 324 7.895429 AGATCTGGATTAGGAAAACAATTTGGA 59.105 33.333 0.00 0.00 0.00 3.53
324 325 7.227049 TCTGGATTAGGAAAACAATTTGGAC 57.773 36.000 0.78 0.00 0.00 4.02
325 326 6.210584 TCTGGATTAGGAAAACAATTTGGACC 59.789 38.462 0.78 0.00 0.00 4.46
326 327 6.081356 TGGATTAGGAAAACAATTTGGACCT 58.919 36.000 0.78 6.33 0.00 3.85
327 328 6.556874 TGGATTAGGAAAACAATTTGGACCTT 59.443 34.615 0.78 0.00 0.00 3.50
328 329 6.873605 GGATTAGGAAAACAATTTGGACCTTG 59.126 38.462 0.78 0.00 0.00 3.61
329 330 4.071961 AGGAAAACAATTTGGACCTTGC 57.928 40.909 0.78 0.00 0.00 4.01
330 331 3.138304 GGAAAACAATTTGGACCTTGCC 58.862 45.455 0.78 0.00 0.00 4.52
331 332 3.181455 GGAAAACAATTTGGACCTTGCCT 60.181 43.478 0.78 0.00 0.00 4.75
332 333 4.450976 GAAAACAATTTGGACCTTGCCTT 58.549 39.130 0.78 0.00 0.00 4.35
333 334 4.502105 AAACAATTTGGACCTTGCCTTT 57.498 36.364 0.78 0.00 0.00 3.11
334 335 3.473923 ACAATTTGGACCTTGCCTTTG 57.526 42.857 0.78 0.00 0.00 2.77
335 336 2.771372 ACAATTTGGACCTTGCCTTTGT 59.229 40.909 0.78 0.00 0.00 2.83
336 337 3.181466 ACAATTTGGACCTTGCCTTTGTC 60.181 43.478 0.78 0.00 0.00 3.18
337 338 2.151502 TTTGGACCTTGCCTTTGTCA 57.848 45.000 0.00 0.00 0.00 3.58
338 339 2.380064 TTGGACCTTGCCTTTGTCAT 57.620 45.000 0.00 0.00 0.00 3.06
339 340 2.380064 TGGACCTTGCCTTTGTCATT 57.620 45.000 0.00 0.00 0.00 2.57
340 341 2.238521 TGGACCTTGCCTTTGTCATTC 58.761 47.619 0.00 0.00 0.00 2.67
341 342 2.238521 GGACCTTGCCTTTGTCATTCA 58.761 47.619 0.00 0.00 0.00 2.57
342 343 2.029918 GGACCTTGCCTTTGTCATTCAC 60.030 50.000 0.00 0.00 0.00 3.18
343 344 1.963515 ACCTTGCCTTTGTCATTCACC 59.036 47.619 0.00 0.00 0.00 4.02
344 345 1.068333 CCTTGCCTTTGTCATTCACCG 60.068 52.381 0.00 0.00 0.00 4.94
345 346 0.313672 TTGCCTTTGTCATTCACCGC 59.686 50.000 0.00 0.00 0.00 5.68
346 347 1.212751 GCCTTTGTCATTCACCGCC 59.787 57.895 0.00 0.00 0.00 6.13
347 348 1.523154 GCCTTTGTCATTCACCGCCA 61.523 55.000 0.00 0.00 0.00 5.69
348 349 0.240945 CCTTTGTCATTCACCGCCAC 59.759 55.000 0.00 0.00 0.00 5.01
349 350 0.240945 CTTTGTCATTCACCGCCACC 59.759 55.000 0.00 0.00 0.00 4.61
350 351 1.175983 TTTGTCATTCACCGCCACCC 61.176 55.000 0.00 0.00 0.00 4.61
351 352 2.063015 TTGTCATTCACCGCCACCCT 62.063 55.000 0.00 0.00 0.00 4.34
352 353 2.040544 GTCATTCACCGCCACCCTG 61.041 63.158 0.00 0.00 0.00 4.45
353 354 2.034066 CATTCACCGCCACCCTGT 59.966 61.111 0.00 0.00 0.00 4.00
354 355 1.603455 CATTCACCGCCACCCTGTT 60.603 57.895 0.00 0.00 0.00 3.16
355 356 1.303317 ATTCACCGCCACCCTGTTC 60.303 57.895 0.00 0.00 0.00 3.18
356 357 1.779061 ATTCACCGCCACCCTGTTCT 61.779 55.000 0.00 0.00 0.00 3.01
357 358 1.990160 TTCACCGCCACCCTGTTCTT 61.990 55.000 0.00 0.00 0.00 2.52
358 359 1.966451 CACCGCCACCCTGTTCTTC 60.966 63.158 0.00 0.00 0.00 2.87
359 360 2.147387 ACCGCCACCCTGTTCTTCT 61.147 57.895 0.00 0.00 0.00 2.85
360 361 1.376037 CCGCCACCCTGTTCTTCTC 60.376 63.158 0.00 0.00 0.00 2.87
361 362 1.376037 CGCCACCCTGTTCTTCTCC 60.376 63.158 0.00 0.00 0.00 3.71
362 363 1.831652 CGCCACCCTGTTCTTCTCCT 61.832 60.000 0.00 0.00 0.00 3.69
363 364 0.402121 GCCACCCTGTTCTTCTCCTT 59.598 55.000 0.00 0.00 0.00 3.36
364 365 1.202940 GCCACCCTGTTCTTCTCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
365 366 2.784347 CCACCCTGTTCTTCTCCTTTC 58.216 52.381 0.00 0.00 0.00 2.62
366 367 2.553247 CCACCCTGTTCTTCTCCTTTCC 60.553 54.545 0.00 0.00 0.00 3.13
367 368 1.705745 ACCCTGTTCTTCTCCTTTCCC 59.294 52.381 0.00 0.00 0.00 3.97
368 369 1.988846 CCCTGTTCTTCTCCTTTCCCT 59.011 52.381 0.00 0.00 0.00 4.20
369 370 2.026729 CCCTGTTCTTCTCCTTTCCCTC 60.027 54.545 0.00 0.00 0.00 4.30
370 371 2.909662 CCTGTTCTTCTCCTTTCCCTCT 59.090 50.000 0.00 0.00 0.00 3.69
371 372 3.055458 CCTGTTCTTCTCCTTTCCCTCTC 60.055 52.174 0.00 0.00 0.00 3.20
372 373 2.563179 TGTTCTTCTCCTTTCCCTCTCG 59.437 50.000 0.00 0.00 0.00 4.04
373 374 1.853963 TCTTCTCCTTTCCCTCTCGG 58.146 55.000 0.00 0.00 0.00 4.63
374 375 1.077334 TCTTCTCCTTTCCCTCTCGGT 59.923 52.381 0.00 0.00 0.00 4.69
375 376 1.478916 CTTCTCCTTTCCCTCTCGGTC 59.521 57.143 0.00 0.00 0.00 4.79
376 377 0.705253 TCTCCTTTCCCTCTCGGTCT 59.295 55.000 0.00 0.00 0.00 3.85
377 378 1.107945 CTCCTTTCCCTCTCGGTCTC 58.892 60.000 0.00 0.00 0.00 3.36
378 379 0.408309 TCCTTTCCCTCTCGGTCTCA 59.592 55.000 0.00 0.00 0.00 3.27
379 380 0.533032 CCTTTCCCTCTCGGTCTCAC 59.467 60.000 0.00 0.00 0.00 3.51
380 381 0.171455 CTTTCCCTCTCGGTCTCACG 59.829 60.000 0.00 0.00 0.00 4.35
381 382 1.248785 TTTCCCTCTCGGTCTCACGG 61.249 60.000 0.00 0.00 0.00 4.94
382 383 2.361357 CCCTCTCGGTCTCACGGT 60.361 66.667 0.00 0.00 0.00 4.83
383 384 2.408241 CCCTCTCGGTCTCACGGTC 61.408 68.421 0.00 0.00 0.00 4.79
384 385 2.408241 CCTCTCGGTCTCACGGTCC 61.408 68.421 0.00 0.00 0.00 4.46
385 386 2.745100 TCTCGGTCTCACGGTCCG 60.745 66.667 10.48 10.48 44.76 4.79
386 387 4.477975 CTCGGTCTCACGGTCCGC 62.478 72.222 12.28 0.00 43.35 5.54
389 390 4.353437 GGTCTCACGGTCCGCGTT 62.353 66.667 12.28 0.00 0.00 4.84
390 391 3.103911 GTCTCACGGTCCGCGTTG 61.104 66.667 12.28 2.14 0.00 4.10
391 392 3.598715 TCTCACGGTCCGCGTTGT 61.599 61.111 12.28 0.00 0.00 3.32
392 393 2.660552 CTCACGGTCCGCGTTGTT 60.661 61.111 12.28 0.00 0.00 2.83
393 394 2.654912 CTCACGGTCCGCGTTGTTC 61.655 63.158 12.28 0.00 0.00 3.18
394 395 2.660552 CACGGTCCGCGTTGTTCT 60.661 61.111 12.28 0.00 0.00 3.01
395 396 2.355481 ACGGTCCGCGTTGTTCTC 60.355 61.111 12.28 0.00 0.00 2.87
396 397 2.049433 CGGTCCGCGTTGTTCTCT 60.049 61.111 4.92 0.00 0.00 3.10
397 398 2.087009 CGGTCCGCGTTGTTCTCTC 61.087 63.158 4.92 0.00 0.00 3.20
398 399 1.737008 GGTCCGCGTTGTTCTCTCC 60.737 63.158 4.92 0.00 0.00 3.71
399 400 1.737008 GTCCGCGTTGTTCTCTCCC 60.737 63.158 4.92 0.00 0.00 4.30
400 401 2.809601 CCGCGTTGTTCTCTCCCG 60.810 66.667 4.92 0.00 0.00 5.14
401 402 3.479269 CGCGTTGTTCTCTCCCGC 61.479 66.667 0.00 0.00 40.87 6.13
402 403 3.119096 GCGTTGTTCTCTCCCGCC 61.119 66.667 0.00 0.00 38.52 6.13
403 404 2.809601 CGTTGTTCTCTCCCGCCG 60.810 66.667 0.00 0.00 0.00 6.46
404 405 2.654877 GTTGTTCTCTCCCGCCGA 59.345 61.111 0.00 0.00 0.00 5.54
405 406 1.737008 GTTGTTCTCTCCCGCCGAC 60.737 63.158 0.00 0.00 0.00 4.79
406 407 2.204461 TTGTTCTCTCCCGCCGACA 61.204 57.895 0.00 0.00 0.00 4.35
407 408 2.154798 TTGTTCTCTCCCGCCGACAG 62.155 60.000 0.00 0.00 0.00 3.51
408 409 3.760035 TTCTCTCCCGCCGACAGC 61.760 66.667 0.00 0.00 38.52 4.40
425 426 2.811317 CGAAGAGCACCTCGCCAC 60.811 66.667 0.00 0.00 44.04 5.01
426 427 2.343758 GAAGAGCACCTCGCCACA 59.656 61.111 0.00 0.00 44.04 4.17
427 428 2.029844 GAAGAGCACCTCGCCACAC 61.030 63.158 0.00 0.00 44.04 3.82
428 429 3.537206 AAGAGCACCTCGCCACACC 62.537 63.158 0.00 0.00 44.04 4.16
432 433 4.394712 CACCTCGCCACACCCCTC 62.395 72.222 0.00 0.00 0.00 4.30
466 467 4.971125 GCCGCGCCCTGGATCTAC 62.971 72.222 0.00 0.00 0.00 2.59
467 468 4.301027 CCGCGCCCTGGATCTACC 62.301 72.222 0.00 0.00 39.54 3.18
468 469 3.227276 CGCGCCCTGGATCTACCT 61.227 66.667 0.00 0.00 39.86 3.08
469 470 2.423446 GCGCCCTGGATCTACCTG 59.577 66.667 0.00 0.00 39.86 4.00
470 471 2.423446 CGCCCTGGATCTACCTGC 59.577 66.667 0.00 0.00 39.86 4.85
471 472 2.423446 GCCCTGGATCTACCTGCG 59.577 66.667 0.00 0.00 39.86 5.18
472 473 2.423446 CCCTGGATCTACCTGCGC 59.577 66.667 0.00 0.00 39.86 6.09
473 474 2.423446 CCTGGATCTACCTGCGCC 59.577 66.667 4.18 0.00 39.86 6.53
474 475 2.028190 CTGGATCTACCTGCGCCG 59.972 66.667 4.18 0.00 39.86 6.46
475 476 4.221422 TGGATCTACCTGCGCCGC 62.221 66.667 4.18 0.00 39.86 6.53
476 477 4.971125 GGATCTACCTGCGCCGCC 62.971 72.222 6.63 0.00 35.41 6.13
489 490 4.379243 CCGCCGTCAGCAAGGTCT 62.379 66.667 0.00 0.00 44.04 3.85
490 491 3.114616 CGCCGTCAGCAAGGTCTG 61.115 66.667 0.00 0.00 44.04 3.51
491 492 2.743928 GCCGTCAGCAAGGTCTGG 60.744 66.667 0.00 0.00 42.97 3.86
492 493 3.059982 CCGTCAGCAAGGTCTGGA 58.940 61.111 0.00 0.00 34.91 3.86
493 494 1.599047 CCGTCAGCAAGGTCTGGAT 59.401 57.895 0.00 0.00 34.91 3.41
494 495 0.742281 CCGTCAGCAAGGTCTGGATG 60.742 60.000 0.00 0.00 34.91 3.51
495 496 0.036952 CGTCAGCAAGGTCTGGATGT 60.037 55.000 0.00 0.00 34.91 3.06
496 497 1.731720 GTCAGCAAGGTCTGGATGTC 58.268 55.000 0.00 0.00 34.91 3.06
497 498 0.615331 TCAGCAAGGTCTGGATGTCC 59.385 55.000 0.00 0.00 34.91 4.02
498 499 0.393537 CAGCAAGGTCTGGATGTCCC 60.394 60.000 0.00 0.00 34.29 4.46
499 500 1.077429 GCAAGGTCTGGATGTCCCC 60.077 63.158 0.00 0.00 34.29 4.81
500 501 1.852157 GCAAGGTCTGGATGTCCCCA 61.852 60.000 0.00 0.00 34.29 4.96
501 502 0.921896 CAAGGTCTGGATGTCCCCAT 59.078 55.000 0.00 0.00 35.33 4.00
502 503 0.921896 AAGGTCTGGATGTCCCCATG 59.078 55.000 0.00 0.00 35.33 3.66
503 504 0.990282 AGGTCTGGATGTCCCCATGG 60.990 60.000 4.14 4.14 35.33 3.66
504 505 1.152881 GTCTGGATGTCCCCATGGC 60.153 63.158 6.09 0.00 35.33 4.40
505 506 2.196776 CTGGATGTCCCCATGGCC 59.803 66.667 6.09 0.00 35.33 5.36
506 507 3.779850 CTGGATGTCCCCATGGCCG 62.780 68.421 6.09 0.00 35.33 6.13
507 508 3.809013 GGATGTCCCCATGGCCGT 61.809 66.667 6.09 0.00 0.00 5.68
508 509 2.203209 GATGTCCCCATGGCCGTC 60.203 66.667 6.09 3.54 0.00 4.79
509 510 2.692368 ATGTCCCCATGGCCGTCT 60.692 61.111 6.09 0.00 0.00 4.18
510 511 2.666596 GATGTCCCCATGGCCGTCTC 62.667 65.000 6.09 0.00 0.00 3.36
511 512 4.176752 GTCCCCATGGCCGTCTCC 62.177 72.222 6.09 0.00 0.00 3.71
512 513 4.414956 TCCCCATGGCCGTCTCCT 62.415 66.667 6.09 0.00 0.00 3.69
513 514 3.411517 CCCCATGGCCGTCTCCTT 61.412 66.667 6.09 0.00 0.00 3.36
514 515 2.190578 CCCATGGCCGTCTCCTTC 59.809 66.667 6.09 0.00 0.00 3.46
515 516 2.370445 CCCATGGCCGTCTCCTTCT 61.370 63.158 6.09 0.00 0.00 2.85
516 517 1.144936 CCATGGCCGTCTCCTTCTC 59.855 63.158 0.00 0.00 0.00 2.87
517 518 1.333636 CCATGGCCGTCTCCTTCTCT 61.334 60.000 0.00 0.00 0.00 3.10
518 519 0.539051 CATGGCCGTCTCCTTCTCTT 59.461 55.000 0.00 0.00 0.00 2.85
519 520 1.065854 CATGGCCGTCTCCTTCTCTTT 60.066 52.381 0.00 0.00 0.00 2.52
520 521 1.933021 TGGCCGTCTCCTTCTCTTTA 58.067 50.000 0.00 0.00 0.00 1.85
521 522 1.549170 TGGCCGTCTCCTTCTCTTTAC 59.451 52.381 0.00 0.00 0.00 2.01
522 523 1.134759 GGCCGTCTCCTTCTCTTTACC 60.135 57.143 0.00 0.00 0.00 2.85
523 524 1.826096 GCCGTCTCCTTCTCTTTACCT 59.174 52.381 0.00 0.00 0.00 3.08
524 525 2.159212 GCCGTCTCCTTCTCTTTACCTC 60.159 54.545 0.00 0.00 0.00 3.85
525 526 2.427812 CCGTCTCCTTCTCTTTACCTCC 59.572 54.545 0.00 0.00 0.00 4.30
526 527 2.427812 CGTCTCCTTCTCTTTACCTCCC 59.572 54.545 0.00 0.00 0.00 4.30
527 528 2.767394 GTCTCCTTCTCTTTACCTCCCC 59.233 54.545 0.00 0.00 0.00 4.81
528 529 2.120312 CTCCTTCTCTTTACCTCCCCC 58.880 57.143 0.00 0.00 0.00 5.40
529 530 1.439543 TCCTTCTCTTTACCTCCCCCA 59.560 52.381 0.00 0.00 0.00 4.96
530 531 1.840635 CCTTCTCTTTACCTCCCCCAG 59.159 57.143 0.00 0.00 0.00 4.45
538 539 4.354943 CCTCCCCCAGGTCCCACT 62.355 72.222 0.00 0.00 37.53 4.00
539 540 2.689034 CTCCCCCAGGTCCCACTC 60.689 72.222 0.00 0.00 0.00 3.51
540 541 4.348495 TCCCCCAGGTCCCACTCC 62.348 72.222 0.00 0.00 0.00 3.85
541 542 4.354943 CCCCCAGGTCCCACTCCT 62.355 72.222 0.00 0.00 35.45 3.69
545 546 4.087892 CAGGTCCCACTCCTGCCG 62.088 72.222 0.00 0.00 44.46 5.69
560 561 4.344474 CCGCCGTCGCCTAGATCC 62.344 72.222 0.00 0.00 0.00 3.36
561 562 4.344474 CGCCGTCGCCTAGATCCC 62.344 72.222 0.00 0.00 0.00 3.85
562 563 4.344474 GCCGTCGCCTAGATCCCG 62.344 72.222 0.00 0.00 0.00 5.14
563 564 2.593725 CCGTCGCCTAGATCCCGA 60.594 66.667 0.00 0.00 0.00 5.14
564 565 2.618219 CCGTCGCCTAGATCCCGAG 61.618 68.421 0.00 0.00 0.00 4.63
565 566 2.646143 GTCGCCTAGATCCCGAGC 59.354 66.667 0.00 0.00 0.00 5.03
566 567 2.597805 TCGCCTAGATCCCGAGCC 60.598 66.667 0.00 0.00 0.00 4.70
567 568 3.686045 CGCCTAGATCCCGAGCCC 61.686 72.222 0.00 0.00 0.00 5.19
568 569 3.315140 GCCTAGATCCCGAGCCCC 61.315 72.222 0.00 0.00 0.00 5.80
569 570 2.604991 CCTAGATCCCGAGCCCCC 60.605 72.222 0.00 0.00 0.00 5.40
584 585 4.767255 CCCCACAGCGTGCTCCTC 62.767 72.222 0.00 0.00 31.34 3.71
585 586 4.767255 CCCACAGCGTGCTCCTCC 62.767 72.222 0.00 0.00 31.34 4.30
586 587 3.699894 CCACAGCGTGCTCCTCCT 61.700 66.667 0.00 0.00 31.34 3.69
587 588 2.125753 CACAGCGTGCTCCTCCTC 60.126 66.667 0.00 0.00 0.00 3.71
588 589 3.386237 ACAGCGTGCTCCTCCTCC 61.386 66.667 0.00 0.00 0.00 4.30
589 590 3.073735 CAGCGTGCTCCTCCTCCT 61.074 66.667 0.00 0.00 0.00 3.69
590 591 3.073735 AGCGTGCTCCTCCTCCTG 61.074 66.667 0.00 0.00 0.00 3.86
591 592 4.828925 GCGTGCTCCTCCTCCTGC 62.829 72.222 0.00 0.00 0.00 4.85
592 593 4.154347 CGTGCTCCTCCTCCTGCC 62.154 72.222 0.00 0.00 0.00 4.85
593 594 3.005539 GTGCTCCTCCTCCTGCCA 61.006 66.667 0.00 0.00 0.00 4.92
594 595 2.203983 TGCTCCTCCTCCTGCCAA 60.204 61.111 0.00 0.00 0.00 4.52
595 596 2.270527 GCTCCTCCTCCTGCCAAC 59.729 66.667 0.00 0.00 0.00 3.77
596 597 2.581354 CTCCTCCTCCTGCCAACG 59.419 66.667 0.00 0.00 0.00 4.10
597 598 2.203788 TCCTCCTCCTGCCAACGT 60.204 61.111 0.00 0.00 0.00 3.99
598 599 0.970937 CTCCTCCTCCTGCCAACGTA 60.971 60.000 0.00 0.00 0.00 3.57
599 600 0.970937 TCCTCCTCCTGCCAACGTAG 60.971 60.000 0.00 0.00 0.00 3.51
600 601 1.153549 CTCCTCCTGCCAACGTAGC 60.154 63.158 3.62 3.62 0.00 3.58
601 602 2.125106 CCTCCTGCCAACGTAGCC 60.125 66.667 7.92 0.00 0.00 3.93
602 603 2.125106 CTCCTGCCAACGTAGCCC 60.125 66.667 7.92 0.00 0.00 5.19
603 604 2.925706 TCCTGCCAACGTAGCCCA 60.926 61.111 7.92 0.00 0.00 5.36
604 605 2.436646 CCTGCCAACGTAGCCCAG 60.437 66.667 7.92 3.74 0.00 4.45
605 606 2.436646 CTGCCAACGTAGCCCAGG 60.437 66.667 7.92 0.00 0.00 4.45
606 607 4.715523 TGCCAACGTAGCCCAGGC 62.716 66.667 0.00 0.00 45.41 4.85
616 617 3.639445 GCCCAGGCTCAGAGATCA 58.361 61.111 0.00 0.00 38.26 2.92
617 618 1.446791 GCCCAGGCTCAGAGATCAG 59.553 63.158 0.00 0.00 38.26 2.90
618 619 1.446791 CCCAGGCTCAGAGATCAGC 59.553 63.158 0.00 0.00 34.65 4.26
619 620 1.067749 CCAGGCTCAGAGATCAGCG 59.932 63.158 0.00 0.00 36.41 5.18
620 621 1.674764 CCAGGCTCAGAGATCAGCGT 61.675 60.000 0.00 0.00 36.41 5.07
621 622 0.175302 CAGGCTCAGAGATCAGCGTT 59.825 55.000 0.00 0.00 36.41 4.84
622 623 0.459489 AGGCTCAGAGATCAGCGTTC 59.541 55.000 0.00 0.00 36.41 3.95
623 624 0.529555 GGCTCAGAGATCAGCGTTCC 60.530 60.000 0.00 0.00 36.41 3.62
624 625 0.529555 GCTCAGAGATCAGCGTTCCC 60.530 60.000 0.00 0.00 0.00 3.97
625 626 0.103937 CTCAGAGATCAGCGTTCCCC 59.896 60.000 0.00 0.00 0.00 4.81
626 627 1.144936 CAGAGATCAGCGTTCCCCC 59.855 63.158 0.00 0.00 0.00 5.40
647 648 3.801997 CCCCCGCCAGATGCTTCT 61.802 66.667 0.00 0.00 38.05 2.85
648 649 2.203126 CCCCGCCAGATGCTTCTC 60.203 66.667 0.00 0.00 38.05 2.87
649 650 2.203126 CCCGCCAGATGCTTCTCC 60.203 66.667 0.00 0.00 38.05 3.71
650 651 2.586245 CCGCCAGATGCTTCTCCA 59.414 61.111 0.00 0.00 38.05 3.86
651 652 1.147824 CCGCCAGATGCTTCTCCAT 59.852 57.895 0.00 0.00 38.05 3.41
652 653 0.394192 CCGCCAGATGCTTCTCCATA 59.606 55.000 0.00 0.00 38.05 2.74
653 654 1.607509 CCGCCAGATGCTTCTCCATAG 60.608 57.143 0.00 0.00 38.05 2.23
654 655 1.069823 CGCCAGATGCTTCTCCATAGT 59.930 52.381 0.00 0.00 38.05 2.12
655 656 2.765122 GCCAGATGCTTCTCCATAGTC 58.235 52.381 0.00 0.00 36.87 2.59
656 657 2.865670 GCCAGATGCTTCTCCATAGTCG 60.866 54.545 0.00 0.00 36.87 4.18
657 658 2.625314 CCAGATGCTTCTCCATAGTCGA 59.375 50.000 0.00 0.00 0.00 4.20
658 659 3.551863 CCAGATGCTTCTCCATAGTCGAC 60.552 52.174 7.70 7.70 0.00 4.20
659 660 2.292016 AGATGCTTCTCCATAGTCGACG 59.708 50.000 10.46 0.00 0.00 5.12
660 661 1.746470 TGCTTCTCCATAGTCGACGA 58.254 50.000 10.46 5.12 0.00 4.20
661 662 1.400846 TGCTTCTCCATAGTCGACGAC 59.599 52.381 20.25 20.25 0.00 4.34
662 663 1.671845 GCTTCTCCATAGTCGACGACT 59.328 52.381 31.23 31.23 45.54 4.18
663 664 2.286536 GCTTCTCCATAGTCGACGACTC 60.287 54.545 32.32 12.26 42.40 3.36
664 665 2.983907 TCTCCATAGTCGACGACTCT 57.016 50.000 32.32 21.04 42.40 3.24
665 666 2.552031 TCTCCATAGTCGACGACTCTG 58.448 52.381 32.32 29.52 42.40 3.35
666 667 1.003331 CTCCATAGTCGACGACTCTGC 60.003 57.143 32.32 3.86 42.40 4.26
667 668 0.029567 CCATAGTCGACGACTCTGCC 59.970 60.000 32.32 3.06 42.40 4.85
668 669 0.316278 CATAGTCGACGACTCTGCCG 60.316 60.000 32.32 14.24 42.40 5.69
669 670 2.049475 ATAGTCGACGACTCTGCCGC 62.049 60.000 32.32 1.47 42.40 6.53
685 686 4.678743 GCCCCTGCTTCCGGGTTT 62.679 66.667 0.00 0.00 41.85 3.27
686 687 2.117423 CCCCTGCTTCCGGGTTTT 59.883 61.111 0.00 0.00 40.24 2.43
687 688 1.977009 CCCCTGCTTCCGGGTTTTC 60.977 63.158 0.00 0.00 40.24 2.29
688 689 1.977009 CCCTGCTTCCGGGTTTTCC 60.977 63.158 0.00 0.00 36.91 3.13
697 698 2.675423 GGGTTTTCCGCCCTGACC 60.675 66.667 0.00 0.00 42.81 4.02
698 699 2.114411 GGTTTTCCGCCCTGACCA 59.886 61.111 0.00 0.00 0.00 4.02
699 700 1.529713 GGTTTTCCGCCCTGACCAA 60.530 57.895 0.00 0.00 0.00 3.67
700 701 1.110518 GGTTTTCCGCCCTGACCAAA 61.111 55.000 0.00 0.00 0.00 3.28
701 702 0.031585 GTTTTCCGCCCTGACCAAAC 59.968 55.000 0.00 0.00 0.00 2.93
702 703 0.106419 TTTTCCGCCCTGACCAAACT 60.106 50.000 0.00 0.00 0.00 2.66
703 704 0.821711 TTTCCGCCCTGACCAAACTG 60.822 55.000 0.00 0.00 0.00 3.16
704 705 1.701031 TTCCGCCCTGACCAAACTGA 61.701 55.000 0.00 0.00 0.00 3.41
705 706 1.228124 CCGCCCTGACCAAACTGAA 60.228 57.895 0.00 0.00 0.00 3.02
706 707 0.821711 CCGCCCTGACCAAACTGAAA 60.822 55.000 0.00 0.00 0.00 2.69
707 708 1.247567 CGCCCTGACCAAACTGAAAT 58.752 50.000 0.00 0.00 0.00 2.17
708 709 1.068333 CGCCCTGACCAAACTGAAATG 60.068 52.381 0.00 0.00 0.00 2.32
709 710 1.963515 GCCCTGACCAAACTGAAATGT 59.036 47.619 0.00 0.00 0.00 2.71
710 711 2.365293 GCCCTGACCAAACTGAAATGTT 59.635 45.455 0.00 0.00 0.00 2.71
711 712 3.799917 GCCCTGACCAAACTGAAATGTTG 60.800 47.826 0.00 0.00 0.00 3.33
712 713 3.243839 CCCTGACCAAACTGAAATGTTGG 60.244 47.826 0.16 0.16 0.00 3.77
713 714 3.383761 CTGACCAAACTGAAATGTTGGC 58.616 45.455 1.61 0.00 0.00 4.52
714 715 3.030291 TGACCAAACTGAAATGTTGGCT 58.970 40.909 1.61 0.00 0.00 4.75
715 716 3.068024 TGACCAAACTGAAATGTTGGCTC 59.932 43.478 1.61 0.84 0.00 4.70
716 717 2.365293 ACCAAACTGAAATGTTGGCTCC 59.635 45.455 1.61 0.00 0.00 4.70
717 718 2.629617 CCAAACTGAAATGTTGGCTCCT 59.370 45.455 0.00 0.00 0.00 3.69
718 719 3.826157 CCAAACTGAAATGTTGGCTCCTA 59.174 43.478 0.00 0.00 0.00 2.94
719 720 4.463891 CCAAACTGAAATGTTGGCTCCTAT 59.536 41.667 0.00 0.00 0.00 2.57
720 721 5.652014 CCAAACTGAAATGTTGGCTCCTATA 59.348 40.000 0.00 0.00 0.00 1.31
721 722 6.183360 CCAAACTGAAATGTTGGCTCCTATAG 60.183 42.308 0.00 0.00 0.00 1.31
722 723 5.957771 ACTGAAATGTTGGCTCCTATAGA 57.042 39.130 0.00 0.00 0.00 1.98
723 724 6.313519 ACTGAAATGTTGGCTCCTATAGAA 57.686 37.500 0.00 0.00 0.00 2.10
724 725 6.721318 ACTGAAATGTTGGCTCCTATAGAAA 58.279 36.000 0.00 0.00 0.00 2.52
725 726 7.175104 ACTGAAATGTTGGCTCCTATAGAAAA 58.825 34.615 0.00 0.00 0.00 2.29
726 727 7.836183 ACTGAAATGTTGGCTCCTATAGAAAAT 59.164 33.333 0.00 0.00 0.00 1.82
727 728 8.593945 TGAAATGTTGGCTCCTATAGAAAATT 57.406 30.769 0.00 0.00 0.00 1.82
728 729 8.686334 TGAAATGTTGGCTCCTATAGAAAATTC 58.314 33.333 0.00 0.00 0.00 2.17
729 730 8.829373 AAATGTTGGCTCCTATAGAAAATTCT 57.171 30.769 0.00 0.77 41.24 2.40
730 731 9.920946 AAATGTTGGCTCCTATAGAAAATTCTA 57.079 29.630 0.00 5.41 43.35 2.10
731 732 9.920946 AATGTTGGCTCCTATAGAAAATTCTAA 57.079 29.630 6.95 0.00 42.55 2.10
733 734 9.920946 TGTTGGCTCCTATAGAAAATTCTAATT 57.079 29.630 6.95 0.00 42.55 1.40
736 737 9.354673 TGGCTCCTATAGAAAATTCTAATTTGG 57.645 33.333 6.95 7.17 42.55 3.28
737 738 9.355916 GGCTCCTATAGAAAATTCTAATTTGGT 57.644 33.333 6.95 0.00 42.55 3.67
797 798 9.929180 TTATATTTGGATAACTGAATCTCGAGG 57.071 33.333 13.56 0.00 0.00 4.63
798 799 4.672587 TTGGATAACTGAATCTCGAGGG 57.327 45.455 13.56 1.02 0.00 4.30
799 800 3.910989 TGGATAACTGAATCTCGAGGGA 58.089 45.455 13.56 0.00 0.00 4.20
800 801 4.286707 TGGATAACTGAATCTCGAGGGAA 58.713 43.478 13.56 0.00 0.00 3.97
801 802 4.714802 TGGATAACTGAATCTCGAGGGAAA 59.285 41.667 13.56 0.00 0.00 3.13
802 803 5.188948 TGGATAACTGAATCTCGAGGGAAAA 59.811 40.000 13.56 0.00 0.00 2.29
803 804 6.113411 GGATAACTGAATCTCGAGGGAAAAA 58.887 40.000 13.56 0.00 0.00 1.94
823 824 3.757745 AAAGGACAACAACAGTGTTCG 57.242 42.857 5.27 4.81 45.00 3.95
824 825 1.663695 AGGACAACAACAGTGTTCGG 58.336 50.000 5.27 0.00 45.00 4.30
828 829 1.101049 CAACAACAGTGTTCGGCCCT 61.101 55.000 5.27 0.00 45.00 5.19
829 830 0.818040 AACAACAGTGTTCGGCCCTC 60.818 55.000 5.27 0.00 45.00 4.30
830 831 2.030562 AACAGTGTTCGGCCCTCG 59.969 61.111 1.64 0.00 40.90 4.63
831 832 2.803817 AACAGTGTTCGGCCCTCGT 61.804 57.895 1.64 0.00 40.32 4.18
833 834 4.003788 AGTGTTCGGCCCTCGTGG 62.004 66.667 0.00 0.00 40.32 4.94
835 836 3.552384 TGTTCGGCCCTCGTGGTT 61.552 61.111 0.00 0.00 40.32 3.67
838 839 3.109592 TTCGGCCCTCGTGGTTTGT 62.110 57.895 0.00 0.00 40.32 2.83
839 840 2.593436 CGGCCCTCGTGGTTTGTT 60.593 61.111 0.00 0.00 36.04 2.83
858 859 1.360911 GGCGCCGGAACAAGAAAAA 59.639 52.632 12.58 0.00 0.00 1.94
861 862 1.799548 GCGCCGGAACAAGAAAAACAA 60.800 47.619 5.05 0.00 0.00 2.83
862 863 1.849829 CGCCGGAACAAGAAAAACAAC 59.150 47.619 5.05 0.00 0.00 3.32
882 883 5.531287 ACAACATTCTTGAGGACCTACAAAC 59.469 40.000 0.00 0.00 0.00 2.93
887 893 0.690762 TGAGGACCTACAAACCAGCC 59.309 55.000 0.00 0.00 0.00 4.85
911 917 3.916392 AAAGGGACGCGCACTCTCG 62.916 63.158 5.73 0.00 0.00 4.04
944 951 1.530013 ATTGCCTTCTGCCTGCACAC 61.530 55.000 0.00 0.00 40.16 3.82
957 964 2.978010 CACACCGCAACCACCCTC 60.978 66.667 0.00 0.00 0.00 4.30
997 1004 1.198637 GACAGCATCACTTCCACAAGC 59.801 52.381 0.00 0.00 32.09 4.01
1003 1011 3.581755 CATCACTTCCACAAGCAAATGG 58.418 45.455 0.00 0.00 37.32 3.16
1155 1163 1.066143 CACCTCGCCAGGAATGTAAGT 60.066 52.381 3.62 0.00 43.65 2.24
1157 1165 3.039011 ACCTCGCCAGGAATGTAAGTAT 58.961 45.455 3.62 0.00 43.65 2.12
1168 1176 7.773224 CCAGGAATGTAAGTATGATAAACACCA 59.227 37.037 0.00 0.00 0.00 4.17
1171 1179 8.612619 GGAATGTAAGTATGATAAACACCACAG 58.387 37.037 0.00 0.00 0.00 3.66
1172 1180 9.162764 GAATGTAAGTATGATAAACACCACAGT 57.837 33.333 0.00 0.00 0.00 3.55
1173 1181 9.515226 AATGTAAGTATGATAAACACCACAGTT 57.485 29.630 0.00 0.00 0.00 3.16
1174 1182 8.317891 TGTAAGTATGATAAACACCACAGTTG 57.682 34.615 0.00 0.00 0.00 3.16
1195 1210 3.637229 TGTCCTCCTTCTATTCGGTCATC 59.363 47.826 0.00 0.00 0.00 2.92
1216 1231 0.731417 TAGTTCGTCGGCTGCTAGAC 59.269 55.000 15.22 15.22 0.00 2.59
1217 1232 0.961358 AGTTCGTCGGCTGCTAGACT 60.961 55.000 20.05 6.55 35.38 3.24
1218 1233 0.109226 GTTCGTCGGCTGCTAGACTT 60.109 55.000 20.05 0.00 35.38 3.01
1219 1234 0.170561 TTCGTCGGCTGCTAGACTTC 59.829 55.000 20.05 2.55 35.38 3.01
1220 1235 0.958876 TCGTCGGCTGCTAGACTTCA 60.959 55.000 20.05 7.24 35.38 3.02
1221 1236 0.524392 CGTCGGCTGCTAGACTTCAG 60.524 60.000 20.05 0.00 35.38 3.02
1222 1237 0.179124 GTCGGCTGCTAGACTTCAGG 60.179 60.000 17.03 0.00 34.74 3.86
1223 1238 0.323451 TCGGCTGCTAGACTTCAGGA 60.323 55.000 0.00 0.00 0.00 3.86
1224 1239 0.102120 CGGCTGCTAGACTTCAGGAG 59.898 60.000 0.00 0.00 34.81 3.69
1250 1265 0.605589 AGTGCTGACAGGCTACTCAC 59.394 55.000 4.26 2.72 0.00 3.51
1310 1325 2.679837 GCTTTTCAAGATGGCGATCTCA 59.320 45.455 11.98 0.00 38.03 3.27
1329 3835 0.534412 ATCCTCTTCGGTGAGCTGTG 59.466 55.000 0.00 0.00 33.02 3.66
1342 3848 5.390567 CGGTGAGCTGTGTAGTTAAATTTCC 60.391 44.000 0.00 0.00 0.00 3.13
1344 3850 6.128254 GGTGAGCTGTGTAGTTAAATTTCCTC 60.128 42.308 0.00 0.00 0.00 3.71
1349 3855 4.925054 TGTGTAGTTAAATTTCCTCGGACG 59.075 41.667 0.00 0.00 0.00 4.79
1361 3867 7.653767 ATTTCCTCGGACGTTCATATATTTC 57.346 36.000 0.00 0.00 0.00 2.17
1380 3887 1.689813 TCTTGACTCACTACCCGCAAA 59.310 47.619 0.00 0.00 0.00 3.68
1389 3896 3.632604 TCACTACCCGCAAACAAATCAAA 59.367 39.130 0.00 0.00 0.00 2.69
1394 3901 5.461032 ACCCGCAAACAAATCAAAGATTA 57.539 34.783 0.00 0.00 0.00 1.75
1398 3905 7.093945 ACCCGCAAACAAATCAAAGATTACTAT 60.094 33.333 0.00 0.00 0.00 2.12
1430 3937 6.704493 ACTTGCTTGAGTAAATCGAACAAGTA 59.296 34.615 11.12 0.00 42.30 2.24
1453 3963 9.712305 AGTATAATCTTGGTTTCATATTCCTCG 57.288 33.333 0.00 0.00 0.00 4.63
1595 4105 3.044894 TGCCATGGTAGACATATGGACA 58.955 45.455 14.67 11.11 43.15 4.02
1605 4115 4.023980 AGACATATGGACAGAGGTCGAAA 58.976 43.478 7.80 0.00 45.28 3.46
1606 4116 4.651503 AGACATATGGACAGAGGTCGAAAT 59.348 41.667 7.80 0.00 45.28 2.17
1610 4120 6.042093 ACATATGGACAGAGGTCGAAATACAT 59.958 38.462 7.80 0.00 45.28 2.29
1700 4210 4.083581 CACGAATCAAAGGATTGTGGAC 57.916 45.455 0.00 0.00 43.69 4.02
1711 4221 1.880027 GATTGTGGACGAAAGCTTGGT 59.120 47.619 0.00 0.49 0.00 3.67
1739 4249 6.325286 AGGCGAAGAAGGTTCTAGAAATCTAT 59.675 38.462 6.78 3.48 36.28 1.98
1857 4367 2.010145 GCCTTATGCGTCTCTGTTCA 57.990 50.000 0.00 0.00 0.00 3.18
2004 4515 5.316987 TCTGGTTTGAATTTCTTCTCCTCC 58.683 41.667 0.00 0.00 32.29 4.30
2007 4518 3.417069 TTGAATTTCTTCTCCTCCGCA 57.583 42.857 0.00 0.00 32.29 5.69
2107 4618 8.967918 ACAAGCTATACTTTGTAGTATGACTCA 58.032 33.333 7.82 0.00 45.11 3.41
2115 4626 3.250744 TGTAGTATGACTCAGTTTGCGC 58.749 45.455 0.00 0.00 0.00 6.09
2221 4732 0.604578 AGTGCACAACATGGATTGCC 59.395 50.000 21.04 4.47 33.86 4.52
2227 4738 2.487762 CACAACATGGATTGCCTACGTT 59.512 45.455 0.00 0.00 32.47 3.99
2248 4759 7.219322 ACGTTTTTGTATACTTTGTAGGACCT 58.781 34.615 4.17 0.00 0.00 3.85
2488 5037 4.255301 AGTCATAATTTTTGGACCGCGTA 58.745 39.130 4.92 0.00 0.00 4.42
2500 5049 3.118542 GGACCGCGTATCGAAATTAAGT 58.881 45.455 4.92 0.00 41.67 2.24
2511 5060 7.901377 CGTATCGAAATTAAGTTCCGTTTTCAT 59.099 33.333 9.88 0.00 0.00 2.57
2609 5160 0.107410 AGTCTCCGTTTGGTGCAACA 60.107 50.000 0.00 0.00 39.98 3.33
2640 5191 3.679980 GTCGATGTGCAACTAGTTGACAT 59.320 43.478 34.43 32.71 42.93 3.06
2744 5317 0.890542 TGCAATTTCGTCTGCTGCCT 60.891 50.000 0.00 0.00 39.38 4.75
2755 5328 0.390860 CTGCTGCCTCGGCTAACTAT 59.609 55.000 9.65 0.00 42.51 2.12
2767 5340 5.448654 TCGGCTAACTATCCTGGTTAACTA 58.551 41.667 5.42 0.00 0.00 2.24
2814 5430 1.004560 CCGCAGTCCATGTGTCAGT 60.005 57.895 0.00 0.00 37.75 3.41
2893 5510 0.391661 CATGTACAACTCCCGCAGCT 60.392 55.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.502387 GCCTGCATGTGAAAAATAATGTTAAAA 58.498 29.630 0.00 0.00 0.00 1.52
38 39 7.148672 CGCCTGCATGTGAAAAATAATGTTAAA 60.149 33.333 0.00 0.00 0.00 1.52
39 40 6.309980 CGCCTGCATGTGAAAAATAATGTTAA 59.690 34.615 0.00 0.00 0.00 2.01
40 41 5.804473 CGCCTGCATGTGAAAAATAATGTTA 59.196 36.000 0.00 0.00 0.00 2.41
41 42 4.626604 CGCCTGCATGTGAAAAATAATGTT 59.373 37.500 0.00 0.00 0.00 2.71
42 43 4.175516 CGCCTGCATGTGAAAAATAATGT 58.824 39.130 0.00 0.00 0.00 2.71
43 44 3.000523 GCGCCTGCATGTGAAAAATAATG 59.999 43.478 6.73 0.00 42.15 1.90
44 45 3.189285 GCGCCTGCATGTGAAAAATAAT 58.811 40.909 6.73 0.00 42.15 1.28
45 46 2.605030 GCGCCTGCATGTGAAAAATAA 58.395 42.857 6.73 0.00 42.15 1.40
46 47 2.276472 GCGCCTGCATGTGAAAAATA 57.724 45.000 6.73 0.00 42.15 1.40
47 48 3.126729 GCGCCTGCATGTGAAAAAT 57.873 47.368 6.73 0.00 42.15 1.82
48 49 4.651585 GCGCCTGCATGTGAAAAA 57.348 50.000 6.73 0.00 42.15 1.94
63 64 3.015293 GACTCCATGTGCACGTGCG 62.015 63.158 33.22 23.83 45.83 5.34
64 65 2.863153 GACTCCATGTGCACGTGC 59.137 61.111 33.11 33.11 42.50 5.34
65 66 0.943835 TTCGACTCCATGTGCACGTG 60.944 55.000 28.62 28.62 0.00 4.49
66 67 0.037326 ATTCGACTCCATGTGCACGT 60.037 50.000 13.13 9.52 0.00 4.49
67 68 1.078709 AATTCGACTCCATGTGCACG 58.921 50.000 13.13 0.00 0.00 5.34
68 69 1.131126 CCAATTCGACTCCATGTGCAC 59.869 52.381 10.75 10.75 0.00 4.57
69 70 1.003003 TCCAATTCGACTCCATGTGCA 59.997 47.619 0.00 0.00 0.00 4.57
70 71 1.737838 TCCAATTCGACTCCATGTGC 58.262 50.000 0.00 0.00 0.00 4.57
71 72 4.970662 AAATCCAATTCGACTCCATGTG 57.029 40.909 0.00 0.00 0.00 3.21
72 73 5.567138 GAAAATCCAATTCGACTCCATGT 57.433 39.130 0.00 0.00 0.00 3.21
81 82 4.695217 TCTTTCCCGAAAATCCAATTCG 57.305 40.909 1.93 1.93 46.86 3.34
82 83 6.753744 CAGATTCTTTCCCGAAAATCCAATTC 59.246 38.462 0.00 0.00 0.00 2.17
83 84 6.211384 ACAGATTCTTTCCCGAAAATCCAATT 59.789 34.615 0.00 0.00 0.00 2.32
84 85 5.716703 ACAGATTCTTTCCCGAAAATCCAAT 59.283 36.000 0.00 0.00 0.00 3.16
85 86 5.076873 ACAGATTCTTTCCCGAAAATCCAA 58.923 37.500 0.00 0.00 0.00 3.53
86 87 4.662278 ACAGATTCTTTCCCGAAAATCCA 58.338 39.130 0.00 0.00 0.00 3.41
87 88 5.644977 AACAGATTCTTTCCCGAAAATCC 57.355 39.130 0.00 0.00 0.00 3.01
88 89 7.946655 AAAAACAGATTCTTTCCCGAAAATC 57.053 32.000 0.00 0.00 0.00 2.17
121 122 9.912634 CACTTATGTAGAAAATCCAACAATGTT 57.087 29.630 0.00 0.00 0.00 2.71
122 123 8.028938 GCACTTATGTAGAAAATCCAACAATGT 58.971 33.333 0.00 0.00 0.00 2.71
123 124 8.028354 TGCACTTATGTAGAAAATCCAACAATG 58.972 33.333 0.00 0.00 0.00 2.82
124 125 8.121305 TGCACTTATGTAGAAAATCCAACAAT 57.879 30.769 0.00 0.00 0.00 2.71
125 126 7.517614 TGCACTTATGTAGAAAATCCAACAA 57.482 32.000 0.00 0.00 0.00 2.83
126 127 7.517614 TTGCACTTATGTAGAAAATCCAACA 57.482 32.000 0.00 0.00 0.00 3.33
127 128 8.986477 ATTTGCACTTATGTAGAAAATCCAAC 57.014 30.769 0.00 0.00 0.00 3.77
128 129 9.995003 AAATTTGCACTTATGTAGAAAATCCAA 57.005 25.926 0.00 0.00 0.00 3.53
129 130 9.995003 AAAATTTGCACTTATGTAGAAAATCCA 57.005 25.926 0.00 0.00 0.00 3.41
134 135 9.421806 CCATGAAAATTTGCACTTATGTAGAAA 57.578 29.630 0.00 0.00 0.00 2.52
135 136 8.801299 TCCATGAAAATTTGCACTTATGTAGAA 58.199 29.630 0.00 0.00 0.00 2.10
136 137 8.347004 TCCATGAAAATTTGCACTTATGTAGA 57.653 30.769 0.00 0.00 0.00 2.59
137 138 8.461222 TCTCCATGAAAATTTGCACTTATGTAG 58.539 33.333 0.00 0.00 0.00 2.74
138 139 8.347004 TCTCCATGAAAATTTGCACTTATGTA 57.653 30.769 0.00 0.00 0.00 2.29
139 140 7.230849 TCTCCATGAAAATTTGCACTTATGT 57.769 32.000 0.00 0.00 0.00 2.29
140 141 8.537049 TTTCTCCATGAAAATTTGCACTTATG 57.463 30.769 0.00 0.00 41.23 1.90
153 154 8.250332 GCATTAGGTATGTTTTTCTCCATGAAA 58.750 33.333 0.00 0.00 38.38 2.69
154 155 7.615365 AGCATTAGGTATGTTTTTCTCCATGAA 59.385 33.333 0.00 0.00 36.57 2.57
155 156 7.118723 AGCATTAGGTATGTTTTTCTCCATGA 58.881 34.615 0.00 0.00 36.57 3.07
156 157 7.284034 AGAGCATTAGGTATGTTTTTCTCCATG 59.716 37.037 0.00 0.00 36.57 3.66
157 158 7.284034 CAGAGCATTAGGTATGTTTTTCTCCAT 59.716 37.037 0.00 0.00 36.57 3.41
158 159 6.599244 CAGAGCATTAGGTATGTTTTTCTCCA 59.401 38.462 0.00 0.00 36.57 3.86
159 160 6.823689 TCAGAGCATTAGGTATGTTTTTCTCC 59.176 38.462 0.00 0.00 36.00 3.71
160 161 7.849804 TCAGAGCATTAGGTATGTTTTTCTC 57.150 36.000 0.00 0.00 36.00 2.87
161 162 8.635765 TTTCAGAGCATTAGGTATGTTTTTCT 57.364 30.769 0.00 0.00 36.00 2.52
162 163 9.691362 TTTTTCAGAGCATTAGGTATGTTTTTC 57.309 29.630 0.00 0.00 36.00 2.29
163 164 9.476202 GTTTTTCAGAGCATTAGGTATGTTTTT 57.524 29.630 0.00 0.00 36.00 1.94
164 165 8.637986 TGTTTTTCAGAGCATTAGGTATGTTTT 58.362 29.630 0.00 0.00 36.00 2.43
165 166 8.177119 TGTTTTTCAGAGCATTAGGTATGTTT 57.823 30.769 0.00 0.00 36.00 2.83
166 167 7.759489 TGTTTTTCAGAGCATTAGGTATGTT 57.241 32.000 0.00 0.00 36.00 2.71
167 168 7.759489 TTGTTTTTCAGAGCATTAGGTATGT 57.241 32.000 0.00 0.00 36.00 2.29
168 169 9.079833 CAATTGTTTTTCAGAGCATTAGGTATG 57.920 33.333 0.00 0.00 35.88 2.39
169 170 9.023962 TCAATTGTTTTTCAGAGCATTAGGTAT 57.976 29.630 5.13 0.00 0.00 2.73
170 171 8.402798 TCAATTGTTTTTCAGAGCATTAGGTA 57.597 30.769 5.13 0.00 0.00 3.08
171 172 7.288810 TCAATTGTTTTTCAGAGCATTAGGT 57.711 32.000 5.13 0.00 0.00 3.08
172 173 9.294030 GTATCAATTGTTTTTCAGAGCATTAGG 57.706 33.333 5.13 0.00 0.00 2.69
175 176 8.031277 GGAGTATCAATTGTTTTTCAGAGCATT 58.969 33.333 5.13 0.00 36.25 3.56
176 177 7.177216 TGGAGTATCAATTGTTTTTCAGAGCAT 59.823 33.333 5.13 0.00 36.25 3.79
177 178 6.489700 TGGAGTATCAATTGTTTTTCAGAGCA 59.510 34.615 5.13 0.00 36.25 4.26
178 179 6.913170 TGGAGTATCAATTGTTTTTCAGAGC 58.087 36.000 5.13 0.00 36.25 4.09
179 180 9.748708 TTTTGGAGTATCAATTGTTTTTCAGAG 57.251 29.630 5.13 0.00 36.25 3.35
268 269 9.502091 AGTGCTGAATAGTAACTACAAAAATGA 57.498 29.630 0.00 0.00 0.00 2.57
271 272 9.332502 TCAAGTGCTGAATAGTAACTACAAAAA 57.667 29.630 0.00 0.00 0.00 1.94
272 273 8.896320 TCAAGTGCTGAATAGTAACTACAAAA 57.104 30.769 0.00 0.00 0.00 2.44
273 274 8.364894 TCTCAAGTGCTGAATAGTAACTACAAA 58.635 33.333 0.00 0.00 32.17 2.83
274 275 7.892609 TCTCAAGTGCTGAATAGTAACTACAA 58.107 34.615 0.00 0.00 32.17 2.41
275 276 7.462571 TCTCAAGTGCTGAATAGTAACTACA 57.537 36.000 0.00 0.00 32.17 2.74
276 277 8.410141 AGATCTCAAGTGCTGAATAGTAACTAC 58.590 37.037 0.00 0.00 32.17 2.73
277 278 8.409371 CAGATCTCAAGTGCTGAATAGTAACTA 58.591 37.037 0.00 0.00 32.17 2.24
278 279 7.264221 CAGATCTCAAGTGCTGAATAGTAACT 58.736 38.462 0.00 0.00 32.17 2.24
279 280 6.478344 CCAGATCTCAAGTGCTGAATAGTAAC 59.522 42.308 0.00 0.00 32.17 2.50
280 281 6.381133 TCCAGATCTCAAGTGCTGAATAGTAA 59.619 38.462 0.00 0.00 32.17 2.24
281 282 5.893824 TCCAGATCTCAAGTGCTGAATAGTA 59.106 40.000 0.00 0.00 32.17 1.82
282 283 4.713814 TCCAGATCTCAAGTGCTGAATAGT 59.286 41.667 0.00 0.00 32.17 2.12
283 284 5.273674 TCCAGATCTCAAGTGCTGAATAG 57.726 43.478 0.00 0.00 32.17 1.73
284 285 5.883685 ATCCAGATCTCAAGTGCTGAATA 57.116 39.130 0.00 0.00 32.17 1.75
285 286 4.774660 ATCCAGATCTCAAGTGCTGAAT 57.225 40.909 0.00 0.00 32.17 2.57
286 287 4.564782 AATCCAGATCTCAAGTGCTGAA 57.435 40.909 0.00 0.00 32.17 3.02
287 288 4.100653 CCTAATCCAGATCTCAAGTGCTGA 59.899 45.833 0.00 0.00 0.00 4.26
288 289 4.100653 TCCTAATCCAGATCTCAAGTGCTG 59.899 45.833 0.00 0.00 0.00 4.41
289 290 4.293494 TCCTAATCCAGATCTCAAGTGCT 58.707 43.478 0.00 0.00 0.00 4.40
290 291 4.679373 TCCTAATCCAGATCTCAAGTGC 57.321 45.455 0.00 0.00 0.00 4.40
291 292 6.881065 TGTTTTCCTAATCCAGATCTCAAGTG 59.119 38.462 0.00 0.00 0.00 3.16
292 293 7.020827 TGTTTTCCTAATCCAGATCTCAAGT 57.979 36.000 0.00 0.00 0.00 3.16
293 294 7.928307 TTGTTTTCCTAATCCAGATCTCAAG 57.072 36.000 0.00 0.00 0.00 3.02
294 295 8.884124 AATTGTTTTCCTAATCCAGATCTCAA 57.116 30.769 0.00 0.00 0.00 3.02
295 296 8.742777 CAAATTGTTTTCCTAATCCAGATCTCA 58.257 33.333 0.00 0.00 0.00 3.27
296 297 8.193438 CCAAATTGTTTTCCTAATCCAGATCTC 58.807 37.037 0.00 0.00 0.00 2.75
297 298 7.895429 TCCAAATTGTTTTCCTAATCCAGATCT 59.105 33.333 0.00 0.00 0.00 2.75
298 299 7.976175 GTCCAAATTGTTTTCCTAATCCAGATC 59.024 37.037 0.00 0.00 0.00 2.75
299 300 7.093333 GGTCCAAATTGTTTTCCTAATCCAGAT 60.093 37.037 0.00 0.00 0.00 2.90
300 301 6.210584 GGTCCAAATTGTTTTCCTAATCCAGA 59.789 38.462 0.00 0.00 0.00 3.86
301 302 6.211384 AGGTCCAAATTGTTTTCCTAATCCAG 59.789 38.462 0.00 0.00 0.00 3.86
302 303 6.081356 AGGTCCAAATTGTTTTCCTAATCCA 58.919 36.000 0.00 0.00 0.00 3.41
303 304 6.605471 AGGTCCAAATTGTTTTCCTAATCC 57.395 37.500 0.00 0.00 0.00 3.01
304 305 6.368791 GCAAGGTCCAAATTGTTTTCCTAATC 59.631 38.462 0.00 0.00 0.00 1.75
305 306 6.230472 GCAAGGTCCAAATTGTTTTCCTAAT 58.770 36.000 0.00 0.00 0.00 1.73
306 307 5.454045 GGCAAGGTCCAAATTGTTTTCCTAA 60.454 40.000 0.00 0.00 0.00 2.69
307 308 4.039852 GGCAAGGTCCAAATTGTTTTCCTA 59.960 41.667 0.00 0.00 0.00 2.94
308 309 3.181455 GGCAAGGTCCAAATTGTTTTCCT 60.181 43.478 0.00 0.00 0.00 3.36
309 310 3.138304 GGCAAGGTCCAAATTGTTTTCC 58.862 45.455 0.00 0.00 0.00 3.13
310 311 4.071961 AGGCAAGGTCCAAATTGTTTTC 57.928 40.909 0.00 0.00 0.00 2.29
311 312 4.502105 AAGGCAAGGTCCAAATTGTTTT 57.498 36.364 0.00 0.00 0.00 2.43
312 313 4.198530 CAAAGGCAAGGTCCAAATTGTTT 58.801 39.130 0.00 0.00 0.00 2.83
313 314 3.199727 ACAAAGGCAAGGTCCAAATTGTT 59.800 39.130 0.00 0.00 30.68 2.83
314 315 2.771372 ACAAAGGCAAGGTCCAAATTGT 59.229 40.909 0.00 0.00 0.00 2.71
315 316 3.181467 TGACAAAGGCAAGGTCCAAATTG 60.181 43.478 0.00 0.00 0.00 2.32
316 317 3.037549 TGACAAAGGCAAGGTCCAAATT 58.962 40.909 0.00 0.00 0.00 1.82
317 318 2.676748 TGACAAAGGCAAGGTCCAAAT 58.323 42.857 0.00 0.00 0.00 2.32
318 319 2.151502 TGACAAAGGCAAGGTCCAAA 57.848 45.000 0.00 0.00 0.00 3.28
319 320 2.380064 ATGACAAAGGCAAGGTCCAA 57.620 45.000 0.00 0.00 0.00 3.53
320 321 2.238521 GAATGACAAAGGCAAGGTCCA 58.761 47.619 0.00 0.00 0.00 4.02
321 322 2.029918 GTGAATGACAAAGGCAAGGTCC 60.030 50.000 0.00 0.00 0.00 4.46
322 323 2.029918 GGTGAATGACAAAGGCAAGGTC 60.030 50.000 0.00 0.00 0.00 3.85
323 324 1.963515 GGTGAATGACAAAGGCAAGGT 59.036 47.619 0.00 0.00 0.00 3.50
324 325 1.068333 CGGTGAATGACAAAGGCAAGG 60.068 52.381 0.00 0.00 0.00 3.61
325 326 1.666888 GCGGTGAATGACAAAGGCAAG 60.667 52.381 0.00 0.00 0.00 4.01
326 327 0.313672 GCGGTGAATGACAAAGGCAA 59.686 50.000 0.00 0.00 0.00 4.52
327 328 1.523154 GGCGGTGAATGACAAAGGCA 61.523 55.000 0.00 0.00 34.63 4.75
328 329 1.212751 GGCGGTGAATGACAAAGGC 59.787 57.895 0.00 0.00 0.00 4.35
329 330 0.240945 GTGGCGGTGAATGACAAAGG 59.759 55.000 0.00 0.00 0.00 3.11
330 331 0.240945 GGTGGCGGTGAATGACAAAG 59.759 55.000 0.00 0.00 0.00 2.77
331 332 1.175983 GGGTGGCGGTGAATGACAAA 61.176 55.000 0.00 0.00 0.00 2.83
332 333 1.602323 GGGTGGCGGTGAATGACAA 60.602 57.895 0.00 0.00 0.00 3.18
333 334 2.033448 GGGTGGCGGTGAATGACA 59.967 61.111 0.00 0.00 0.00 3.58
334 335 2.040544 CAGGGTGGCGGTGAATGAC 61.041 63.158 0.00 0.00 0.00 3.06
335 336 2.063015 AACAGGGTGGCGGTGAATGA 62.063 55.000 0.00 0.00 0.00 2.57
336 337 1.586154 GAACAGGGTGGCGGTGAATG 61.586 60.000 0.00 0.00 0.00 2.67
337 338 1.303317 GAACAGGGTGGCGGTGAAT 60.303 57.895 0.00 0.00 0.00 2.57
338 339 1.990160 AAGAACAGGGTGGCGGTGAA 61.990 55.000 0.00 0.00 0.00 3.18
339 340 2.391724 GAAGAACAGGGTGGCGGTGA 62.392 60.000 0.00 0.00 0.00 4.02
340 341 1.966451 GAAGAACAGGGTGGCGGTG 60.966 63.158 0.00 0.00 0.00 4.94
341 342 2.113243 GAGAAGAACAGGGTGGCGGT 62.113 60.000 0.00 0.00 0.00 5.68
342 343 1.376037 GAGAAGAACAGGGTGGCGG 60.376 63.158 0.00 0.00 0.00 6.13
343 344 1.376037 GGAGAAGAACAGGGTGGCG 60.376 63.158 0.00 0.00 0.00 5.69
344 345 0.402121 AAGGAGAAGAACAGGGTGGC 59.598 55.000 0.00 0.00 0.00 5.01
345 346 2.553247 GGAAAGGAGAAGAACAGGGTGG 60.553 54.545 0.00 0.00 0.00 4.61
346 347 2.553247 GGGAAAGGAGAAGAACAGGGTG 60.553 54.545 0.00 0.00 0.00 4.61
347 348 1.705745 GGGAAAGGAGAAGAACAGGGT 59.294 52.381 0.00 0.00 0.00 4.34
348 349 1.988846 AGGGAAAGGAGAAGAACAGGG 59.011 52.381 0.00 0.00 0.00 4.45
349 350 2.909662 AGAGGGAAAGGAGAAGAACAGG 59.090 50.000 0.00 0.00 0.00 4.00
350 351 3.367910 CGAGAGGGAAAGGAGAAGAACAG 60.368 52.174 0.00 0.00 0.00 3.16
351 352 2.563179 CGAGAGGGAAAGGAGAAGAACA 59.437 50.000 0.00 0.00 0.00 3.18
352 353 3.239587 CGAGAGGGAAAGGAGAAGAAC 57.760 52.381 0.00 0.00 0.00 3.01
367 368 3.188965 GGACCGTGAGACCGAGAG 58.811 66.667 0.00 0.00 0.00 3.20
379 380 2.049433 AGAGAACAACGCGGACCG 60.049 61.111 12.47 10.29 44.21 4.79
380 381 1.737008 GGAGAGAACAACGCGGACC 60.737 63.158 12.47 0.00 0.00 4.46
381 382 1.737008 GGGAGAGAACAACGCGGAC 60.737 63.158 12.47 0.00 0.00 4.79
382 383 2.654877 GGGAGAGAACAACGCGGA 59.345 61.111 12.47 0.00 0.00 5.54
383 384 2.809601 CGGGAGAGAACAACGCGG 60.810 66.667 12.47 0.00 36.59 6.46
384 385 3.479269 GCGGGAGAGAACAACGCG 61.479 66.667 3.53 3.53 40.84 6.01
386 387 2.809601 CGGCGGGAGAGAACAACG 60.810 66.667 0.00 0.00 0.00 4.10
387 388 1.737008 GTCGGCGGGAGAGAACAAC 60.737 63.158 7.21 0.00 0.00 3.32
388 389 2.154798 CTGTCGGCGGGAGAGAACAA 62.155 60.000 7.21 0.00 38.28 2.83
389 390 2.599281 TGTCGGCGGGAGAGAACA 60.599 61.111 7.21 0.00 0.00 3.18
390 391 2.182030 CTGTCGGCGGGAGAGAAC 59.818 66.667 7.21 0.00 38.28 3.01
391 392 3.760035 GCTGTCGGCGGGAGAGAA 61.760 66.667 7.21 0.00 38.28 2.87
400 401 3.482783 GTGCTCTTCGCTGTCGGC 61.483 66.667 0.00 0.00 40.11 5.54
401 402 2.811317 GGTGCTCTTCGCTGTCGG 60.811 66.667 0.00 0.00 40.11 4.79
402 403 1.803519 GAGGTGCTCTTCGCTGTCG 60.804 63.158 0.00 0.00 40.11 4.35
403 404 1.803519 CGAGGTGCTCTTCGCTGTC 60.804 63.158 7.37 0.00 40.11 3.51
404 405 2.259818 CGAGGTGCTCTTCGCTGT 59.740 61.111 7.37 0.00 40.11 4.40
408 409 2.811317 GTGGCGAGGTGCTCTTCG 60.811 66.667 15.02 15.02 45.43 3.79
409 410 2.029844 GTGTGGCGAGGTGCTCTTC 61.030 63.158 0.00 0.00 45.43 2.87
410 411 2.031163 GTGTGGCGAGGTGCTCTT 59.969 61.111 0.00 0.00 45.43 2.85
411 412 4.008933 GGTGTGGCGAGGTGCTCT 62.009 66.667 0.00 0.00 45.43 4.09
415 416 4.394712 GAGGGGTGTGGCGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
449 450 4.971125 GTAGATCCAGGGCGCGGC 62.971 72.222 26.39 26.39 0.00 6.53
450 451 4.301027 GGTAGATCCAGGGCGCGG 62.301 72.222 8.83 0.00 35.97 6.46
451 452 3.227276 AGGTAGATCCAGGGCGCG 61.227 66.667 0.00 0.00 39.02 6.86
452 453 2.423446 CAGGTAGATCCAGGGCGC 59.577 66.667 0.00 0.00 39.02 6.53
453 454 2.423446 GCAGGTAGATCCAGGGCG 59.577 66.667 0.00 0.00 39.02 6.13
454 455 2.423446 CGCAGGTAGATCCAGGGC 59.577 66.667 0.00 0.00 39.02 5.19
455 456 2.423446 GCGCAGGTAGATCCAGGG 59.577 66.667 0.30 0.00 39.02 4.45
456 457 2.423446 GGCGCAGGTAGATCCAGG 59.577 66.667 10.83 0.00 39.02 4.45
457 458 2.028190 CGGCGCAGGTAGATCCAG 59.972 66.667 10.83 0.00 39.02 3.86
458 459 4.221422 GCGGCGCAGGTAGATCCA 62.221 66.667 29.21 0.00 39.02 3.41
459 460 4.971125 GGCGGCGCAGGTAGATCC 62.971 72.222 34.36 8.86 0.00 3.36
472 473 4.379243 AGACCTTGCTGACGGCGG 62.379 66.667 13.24 0.00 45.43 6.13
473 474 3.114616 CAGACCTTGCTGACGGCG 61.115 66.667 4.80 4.80 45.43 6.46
474 475 2.527951 ATCCAGACCTTGCTGACGGC 62.528 60.000 0.00 0.00 38.14 5.68
475 476 0.742281 CATCCAGACCTTGCTGACGG 60.742 60.000 0.00 0.00 38.14 4.79
476 477 0.036952 ACATCCAGACCTTGCTGACG 60.037 55.000 0.00 0.00 38.14 4.35
477 478 1.677217 GGACATCCAGACCTTGCTGAC 60.677 57.143 0.00 0.00 38.14 3.51
478 479 0.615331 GGACATCCAGACCTTGCTGA 59.385 55.000 0.00 0.00 38.14 4.26
479 480 0.393537 GGGACATCCAGACCTTGCTG 60.394 60.000 0.00 0.00 37.91 4.41
480 481 1.566298 GGGGACATCCAGACCTTGCT 61.566 60.000 0.00 0.00 37.91 3.91
481 482 1.077429 GGGGACATCCAGACCTTGC 60.077 63.158 0.00 0.00 37.91 4.01
482 483 2.386864 TGGGGACATCCAGACCTTG 58.613 57.895 0.00 0.00 37.91 3.61
493 494 3.399181 GAGACGGCCATGGGGACA 61.399 66.667 15.13 0.00 45.55 4.02
494 495 4.176752 GGAGACGGCCATGGGGAC 62.177 72.222 15.13 0.00 39.68 4.46
495 496 3.943137 AAGGAGACGGCCATGGGGA 62.943 63.158 15.13 0.00 35.59 4.81
496 497 3.406595 GAAGGAGACGGCCATGGGG 62.407 68.421 15.13 0.00 37.18 4.96
497 498 2.190578 GAAGGAGACGGCCATGGG 59.809 66.667 15.13 0.00 0.00 4.00
498 499 1.144936 GAGAAGGAGACGGCCATGG 59.855 63.158 7.63 7.63 0.00 3.66
499 500 0.539051 AAGAGAAGGAGACGGCCATG 59.461 55.000 2.24 0.00 0.00 3.66
500 501 1.280457 AAAGAGAAGGAGACGGCCAT 58.720 50.000 2.24 0.00 0.00 4.40
501 502 1.549170 GTAAAGAGAAGGAGACGGCCA 59.451 52.381 2.24 0.00 0.00 5.36
502 503 1.134759 GGTAAAGAGAAGGAGACGGCC 60.135 57.143 0.00 0.00 0.00 6.13
503 504 1.826096 AGGTAAAGAGAAGGAGACGGC 59.174 52.381 0.00 0.00 0.00 5.68
504 505 2.427812 GGAGGTAAAGAGAAGGAGACGG 59.572 54.545 0.00 0.00 0.00 4.79
505 506 2.427812 GGGAGGTAAAGAGAAGGAGACG 59.572 54.545 0.00 0.00 0.00 4.18
506 507 2.767394 GGGGAGGTAAAGAGAAGGAGAC 59.233 54.545 0.00 0.00 0.00 3.36
507 508 2.292984 GGGGGAGGTAAAGAGAAGGAGA 60.293 54.545 0.00 0.00 0.00 3.71
508 509 2.120312 GGGGGAGGTAAAGAGAAGGAG 58.880 57.143 0.00 0.00 0.00 3.69
509 510 1.439543 TGGGGGAGGTAAAGAGAAGGA 59.560 52.381 0.00 0.00 0.00 3.36
510 511 1.840635 CTGGGGGAGGTAAAGAGAAGG 59.159 57.143 0.00 0.00 0.00 3.46
511 512 1.840635 CCTGGGGGAGGTAAAGAGAAG 59.159 57.143 0.00 0.00 37.02 2.85
512 513 1.966845 CCTGGGGGAGGTAAAGAGAA 58.033 55.000 0.00 0.00 37.02 2.87
513 514 3.732159 CCTGGGGGAGGTAAAGAGA 57.268 57.895 0.00 0.00 37.02 3.10
522 523 2.689034 GAGTGGGACCTGGGGGAG 60.689 72.222 0.00 0.00 36.25 4.30
523 524 4.348495 GGAGTGGGACCTGGGGGA 62.348 72.222 0.00 0.00 36.25 4.81
524 525 4.354943 AGGAGTGGGACCTGGGGG 62.355 72.222 0.00 0.00 36.30 5.40
543 544 4.344474 GGATCTAGGCGACGGCGG 62.344 72.222 15.06 12.80 41.24 6.13
544 545 4.344474 GGGATCTAGGCGACGGCG 62.344 72.222 16.29 6.12 41.24 6.46
545 546 4.344474 CGGGATCTAGGCGACGGC 62.344 72.222 14.41 14.41 38.90 5.68
546 547 2.593725 TCGGGATCTAGGCGACGG 60.594 66.667 0.00 0.00 0.00 4.79
547 548 2.947542 CTCGGGATCTAGGCGACG 59.052 66.667 0.00 0.00 0.00 5.12
548 549 2.646143 GCTCGGGATCTAGGCGAC 59.354 66.667 0.00 0.00 0.00 5.19
549 550 2.597805 GGCTCGGGATCTAGGCGA 60.598 66.667 0.00 0.00 0.00 5.54
550 551 3.686045 GGGCTCGGGATCTAGGCG 61.686 72.222 0.00 0.00 39.08 5.52
551 552 3.315140 GGGGCTCGGGATCTAGGC 61.315 72.222 0.00 7.85 37.55 3.93
552 553 2.604991 GGGGGCTCGGGATCTAGG 60.605 72.222 0.00 0.00 0.00 3.02
567 568 4.767255 GAGGAGCACGCTGTGGGG 62.767 72.222 0.00 0.00 33.64 4.96
568 569 4.767255 GGAGGAGCACGCTGTGGG 62.767 72.222 0.00 0.00 33.64 4.61
569 570 3.655810 GAGGAGGAGCACGCTGTGG 62.656 68.421 0.00 0.00 33.64 4.17
570 571 2.125753 GAGGAGGAGCACGCTGTG 60.126 66.667 0.00 4.61 36.51 3.66
571 572 3.386237 GGAGGAGGAGCACGCTGT 61.386 66.667 0.00 0.00 0.00 4.40
572 573 3.073735 AGGAGGAGGAGCACGCTG 61.074 66.667 0.00 0.00 0.00 5.18
573 574 3.073735 CAGGAGGAGGAGCACGCT 61.074 66.667 0.00 0.00 0.00 5.07
574 575 4.828925 GCAGGAGGAGGAGCACGC 62.829 72.222 0.00 0.00 0.00 5.34
575 576 4.154347 GGCAGGAGGAGGAGCACG 62.154 72.222 0.00 0.00 0.00 5.34
576 577 2.596851 TTGGCAGGAGGAGGAGCAC 61.597 63.158 0.00 0.00 0.00 4.40
577 578 2.203983 TTGGCAGGAGGAGGAGCA 60.204 61.111 0.00 0.00 0.00 4.26
578 579 2.270527 GTTGGCAGGAGGAGGAGC 59.729 66.667 0.00 0.00 0.00 4.70
579 580 0.970937 TACGTTGGCAGGAGGAGGAG 60.971 60.000 0.00 0.00 0.00 3.69
580 581 0.970937 CTACGTTGGCAGGAGGAGGA 60.971 60.000 0.00 0.00 0.00 3.71
581 582 1.517832 CTACGTTGGCAGGAGGAGG 59.482 63.158 0.00 0.00 0.00 4.30
582 583 1.153549 GCTACGTTGGCAGGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
583 584 2.656069 GGCTACGTTGGCAGGAGGA 61.656 63.158 18.04 0.00 0.00 3.71
584 585 2.125106 GGCTACGTTGGCAGGAGG 60.125 66.667 18.04 0.00 0.00 4.30
585 586 2.125106 GGGCTACGTTGGCAGGAG 60.125 66.667 23.40 0.17 0.00 3.69
586 587 2.925706 TGGGCTACGTTGGCAGGA 60.926 61.111 23.40 5.60 0.00 3.86
587 588 2.436646 CTGGGCTACGTTGGCAGG 60.437 66.667 23.40 12.12 0.00 4.85
588 589 2.436646 CCTGGGCTACGTTGGCAG 60.437 66.667 23.40 17.39 0.00 4.85
589 590 4.715523 GCCTGGGCTACGTTGGCA 62.716 66.667 23.40 9.99 42.79 4.92
599 600 1.446791 CTGATCTCTGAGCCTGGGC 59.553 63.158 3.00 3.00 42.33 5.36
600 601 1.446791 GCTGATCTCTGAGCCTGGG 59.553 63.158 0.00 0.00 0.00 4.45
601 602 1.067749 CGCTGATCTCTGAGCCTGG 59.932 63.158 0.00 0.00 30.98 4.45
602 603 0.175302 AACGCTGATCTCTGAGCCTG 59.825 55.000 0.00 0.31 30.98 4.85
603 604 0.459489 GAACGCTGATCTCTGAGCCT 59.541 55.000 0.00 0.00 30.98 4.58
604 605 0.529555 GGAACGCTGATCTCTGAGCC 60.530 60.000 0.00 0.00 30.98 4.70
605 606 0.529555 GGGAACGCTGATCTCTGAGC 60.530 60.000 0.00 0.00 0.00 4.26
606 607 0.103937 GGGGAACGCTGATCTCTGAG 59.896 60.000 0.00 0.00 38.67 3.35
607 608 1.330655 GGGGGAACGCTGATCTCTGA 61.331 60.000 0.00 0.00 42.66 3.27
608 609 1.144936 GGGGGAACGCTGATCTCTG 59.855 63.158 0.00 0.00 42.66 3.35
609 610 3.635510 GGGGGAACGCTGATCTCT 58.364 61.111 0.00 0.00 42.66 3.10
635 636 2.765122 GACTATGGAGAAGCATCTGGC 58.235 52.381 0.00 0.00 45.30 4.85
636 637 2.625314 TCGACTATGGAGAAGCATCTGG 59.375 50.000 0.00 0.00 35.54 3.86
637 638 3.637432 GTCGACTATGGAGAAGCATCTG 58.363 50.000 8.70 0.00 35.54 2.90
638 639 2.292016 CGTCGACTATGGAGAAGCATCT 59.708 50.000 14.70 0.00 39.10 2.90
639 640 2.290916 TCGTCGACTATGGAGAAGCATC 59.709 50.000 14.70 0.00 0.00 3.91
640 641 2.033550 GTCGTCGACTATGGAGAAGCAT 59.966 50.000 18.09 0.00 0.00 3.79
641 642 1.400846 GTCGTCGACTATGGAGAAGCA 59.599 52.381 18.09 0.00 0.00 3.91
642 643 1.671845 AGTCGTCGACTATGGAGAAGC 59.328 52.381 25.94 0.00 41.51 3.86
643 644 3.001838 CAGAGTCGTCGACTATGGAGAAG 59.998 52.174 32.49 13.54 44.89 2.85
644 645 2.937149 CAGAGTCGTCGACTATGGAGAA 59.063 50.000 32.49 0.00 44.89 2.87
645 646 2.552031 CAGAGTCGTCGACTATGGAGA 58.448 52.381 32.49 0.00 44.89 3.71
650 651 2.015382 CGGCAGAGTCGTCGACTAT 58.985 57.895 27.03 21.81 43.53 2.12
651 652 2.747822 GCGGCAGAGTCGTCGACTA 61.748 63.158 27.03 0.00 43.53 2.59
652 653 4.104417 GCGGCAGAGTCGTCGACT 62.104 66.667 27.28 27.28 46.42 4.18
671 672 3.681473 GGAAAACCCGGAAGCAGG 58.319 61.111 0.73 0.00 0.00 4.85
681 682 1.110518 TTTGGTCAGGGCGGAAAACC 61.111 55.000 0.00 0.00 0.00 3.27
682 683 0.031585 GTTTGGTCAGGGCGGAAAAC 59.968 55.000 0.00 0.00 0.00 2.43
683 684 0.106419 AGTTTGGTCAGGGCGGAAAA 60.106 50.000 0.00 0.00 0.00 2.29
684 685 0.821711 CAGTTTGGTCAGGGCGGAAA 60.822 55.000 0.00 0.00 0.00 3.13
685 686 1.228124 CAGTTTGGTCAGGGCGGAA 60.228 57.895 0.00 0.00 0.00 4.30
686 687 1.701031 TTCAGTTTGGTCAGGGCGGA 61.701 55.000 0.00 0.00 0.00 5.54
687 688 0.821711 TTTCAGTTTGGTCAGGGCGG 60.822 55.000 0.00 0.00 0.00 6.13
688 689 1.068333 CATTTCAGTTTGGTCAGGGCG 60.068 52.381 0.00 0.00 0.00 6.13
689 690 1.963515 ACATTTCAGTTTGGTCAGGGC 59.036 47.619 0.00 0.00 0.00 5.19
690 691 3.243839 CCAACATTTCAGTTTGGTCAGGG 60.244 47.826 0.00 0.00 0.00 4.45
691 692 3.799917 GCCAACATTTCAGTTTGGTCAGG 60.800 47.826 1.79 0.00 0.00 3.86
692 693 3.068590 AGCCAACATTTCAGTTTGGTCAG 59.931 43.478 1.79 0.00 0.00 3.51
693 694 3.030291 AGCCAACATTTCAGTTTGGTCA 58.970 40.909 1.79 0.00 0.00 4.02
694 695 3.552890 GGAGCCAACATTTCAGTTTGGTC 60.553 47.826 1.79 0.00 39.51 4.02
695 696 2.365293 GGAGCCAACATTTCAGTTTGGT 59.635 45.455 1.79 0.00 0.00 3.67
696 697 2.629617 AGGAGCCAACATTTCAGTTTGG 59.370 45.455 0.00 0.00 0.00 3.28
697 698 5.649782 ATAGGAGCCAACATTTCAGTTTG 57.350 39.130 0.00 0.00 0.00 2.93
698 699 6.721318 TCTATAGGAGCCAACATTTCAGTTT 58.279 36.000 0.00 0.00 0.00 2.66
699 700 6.313519 TCTATAGGAGCCAACATTTCAGTT 57.686 37.500 0.00 0.00 0.00 3.16
700 701 5.957771 TCTATAGGAGCCAACATTTCAGT 57.042 39.130 0.00 0.00 0.00 3.41
701 702 7.630242 TTTTCTATAGGAGCCAACATTTCAG 57.370 36.000 0.00 0.00 0.00 3.02
702 703 8.593945 AATTTTCTATAGGAGCCAACATTTCA 57.406 30.769 0.00 0.00 0.00 2.69
703 704 8.907885 AGAATTTTCTATAGGAGCCAACATTTC 58.092 33.333 0.00 0.00 35.34 2.17
704 705 8.829373 AGAATTTTCTATAGGAGCCAACATTT 57.171 30.769 0.00 0.00 35.34 2.32
705 706 9.920946 TTAGAATTTTCTATAGGAGCCAACATT 57.079 29.630 0.00 0.00 39.36 2.71
707 708 9.920946 AATTAGAATTTTCTATAGGAGCCAACA 57.079 29.630 0.00 0.00 39.36 3.33
710 711 9.354673 CCAAATTAGAATTTTCTATAGGAGCCA 57.645 33.333 0.00 0.00 39.36 4.75
711 712 9.355916 ACCAAATTAGAATTTTCTATAGGAGCC 57.644 33.333 0.00 0.00 39.36 4.70
771 772 9.929180 CCTCGAGATTCAGTTATCCAAATATAA 57.071 33.333 15.71 0.00 0.00 0.98
772 773 8.531982 CCCTCGAGATTCAGTTATCCAAATATA 58.468 37.037 15.71 0.00 0.00 0.86
773 774 7.235606 TCCCTCGAGATTCAGTTATCCAAATAT 59.764 37.037 15.71 0.00 0.00 1.28
774 775 6.553476 TCCCTCGAGATTCAGTTATCCAAATA 59.447 38.462 15.71 0.00 0.00 1.40
775 776 5.366768 TCCCTCGAGATTCAGTTATCCAAAT 59.633 40.000 15.71 0.00 0.00 2.32
776 777 4.714802 TCCCTCGAGATTCAGTTATCCAAA 59.285 41.667 15.71 0.00 0.00 3.28
777 778 4.286707 TCCCTCGAGATTCAGTTATCCAA 58.713 43.478 15.71 0.00 0.00 3.53
778 779 3.910989 TCCCTCGAGATTCAGTTATCCA 58.089 45.455 15.71 0.00 0.00 3.41
779 780 4.939052 TTCCCTCGAGATTCAGTTATCC 57.061 45.455 15.71 0.00 0.00 2.59
801 802 4.481463 CGAACACTGTTGTTGTCCTTTTT 58.519 39.130 0.00 0.00 46.43 1.94
802 803 3.119637 CCGAACACTGTTGTTGTCCTTTT 60.120 43.478 0.00 0.00 46.43 2.27
803 804 2.422127 CCGAACACTGTTGTTGTCCTTT 59.578 45.455 0.00 0.00 46.43 3.11
804 805 2.014128 CCGAACACTGTTGTTGTCCTT 58.986 47.619 0.00 0.00 46.43 3.36
811 812 1.227853 GAGGGCCGAACACTGTTGT 60.228 57.895 0.00 0.00 37.67 3.32
823 824 2.561037 CCAACAAACCACGAGGGCC 61.561 63.158 3.29 0.00 42.05 5.80
824 825 3.039134 CCAACAAACCACGAGGGC 58.961 61.111 3.29 0.00 42.05 5.19
828 829 3.587933 GGCGCCAACAAACCACGA 61.588 61.111 24.80 0.00 0.00 4.35
829 830 4.973360 CGGCGCCAACAAACCACG 62.973 66.667 28.98 3.82 0.00 4.94
830 831 4.639171 CCGGCGCCAACAAACCAC 62.639 66.667 28.98 0.00 0.00 4.16
831 832 4.877619 TCCGGCGCCAACAAACCA 62.878 61.111 28.98 0.00 0.00 3.67
833 834 2.354188 GTTCCGGCGCCAACAAAC 60.354 61.111 28.98 19.30 0.00 2.93
835 836 2.829003 TTGTTCCGGCGCCAACAA 60.829 55.556 30.63 30.63 39.61 2.83
838 839 1.384989 TTTTCTTGTTCCGGCGCCAA 61.385 50.000 28.98 11.78 0.00 4.52
839 840 1.384989 TTTTTCTTGTTCCGGCGCCA 61.385 50.000 28.98 4.32 0.00 5.69
858 859 4.974645 TGTAGGTCCTCAAGAATGTTGT 57.025 40.909 0.00 0.00 0.00 3.32
861 862 4.104102 TGGTTTGTAGGTCCTCAAGAATGT 59.896 41.667 0.00 0.00 0.00 2.71
862 863 4.651778 TGGTTTGTAGGTCCTCAAGAATG 58.348 43.478 0.00 0.00 0.00 2.67
882 883 1.452108 GTCCCTTTCGATGGGCTGG 60.452 63.158 16.62 0.00 44.23 4.85
887 893 3.564027 GCGCGTCCCTTTCGATGG 61.564 66.667 8.43 0.00 0.00 3.51
944 951 1.672356 CAAGAGAGGGTGGTTGCGG 60.672 63.158 0.00 0.00 0.00 5.69
957 964 2.628178 TCCGGTGGCAGTATATCAAGAG 59.372 50.000 0.00 0.00 0.00 2.85
997 1004 2.179018 CTTCACCGGCGCCATTTG 59.821 61.111 28.98 19.39 0.00 2.32
1003 1011 3.723348 GAACACCTTCACCGGCGC 61.723 66.667 0.00 0.00 0.00 6.53
1155 1163 6.121776 AGGACAACTGTGGTGTTTATCATA 57.878 37.500 0.00 0.00 0.00 2.15
1157 1165 4.385825 GAGGACAACTGTGGTGTTTATCA 58.614 43.478 0.00 0.00 0.00 2.15
1168 1176 3.195825 CCGAATAGAAGGAGGACAACTGT 59.804 47.826 0.00 0.00 0.00 3.55
1171 1179 3.194968 TGACCGAATAGAAGGAGGACAAC 59.805 47.826 0.00 0.00 0.00 3.32
1172 1180 3.437213 TGACCGAATAGAAGGAGGACAA 58.563 45.455 0.00 0.00 0.00 3.18
1173 1181 3.095912 TGACCGAATAGAAGGAGGACA 57.904 47.619 0.00 0.00 0.00 4.02
1174 1182 3.892588 AGATGACCGAATAGAAGGAGGAC 59.107 47.826 0.00 0.00 0.00 3.85
1195 1210 1.400846 TCTAGCAGCCGACGAACTAAG 59.599 52.381 0.00 0.00 0.00 2.18
1216 1231 1.275856 AGCACTCTGAAGCTCCTGAAG 59.724 52.381 0.00 0.00 36.00 3.02
1217 1232 1.001746 CAGCACTCTGAAGCTCCTGAA 59.998 52.381 1.70 0.00 42.95 3.02
1218 1233 0.607112 CAGCACTCTGAAGCTCCTGA 59.393 55.000 1.70 0.00 42.95 3.86
1219 1234 0.607112 TCAGCACTCTGAAGCTCCTG 59.393 55.000 1.70 0.00 45.69 3.86
1220 1235 3.063915 TCAGCACTCTGAAGCTCCT 57.936 52.632 1.70 0.00 45.69 3.69
1250 1265 3.010734 CTGCAAGAAGGCACCACAGTG 62.011 57.143 0.00 0.00 41.74 3.66
1294 1309 2.298446 GAGGATGAGATCGCCATCTTGA 59.702 50.000 21.92 0.00 39.71 3.02
1310 1325 0.534412 CACAGCTCACCGAAGAGGAT 59.466 55.000 6.28 0.00 45.00 3.24
1329 3835 5.634859 TGAACGTCCGAGGAAATTTAACTAC 59.365 40.000 0.00 0.00 0.00 2.73
1342 3848 6.918569 AGTCAAGAAATATATGAACGTCCGAG 59.081 38.462 0.00 0.00 0.00 4.63
1344 3850 6.695713 TGAGTCAAGAAATATATGAACGTCCG 59.304 38.462 0.00 0.00 0.00 4.79
1349 3855 9.262358 GGGTAGTGAGTCAAGAAATATATGAAC 57.738 37.037 0.00 0.00 0.00 3.18
1361 3867 1.798813 GTTTGCGGGTAGTGAGTCAAG 59.201 52.381 0.00 0.00 0.00 3.02
1398 3905 8.766000 TCGATTTACTCAAGCAAGTTGTATTA 57.234 30.769 4.48 0.00 37.43 0.98
1401 3908 6.480651 TGTTCGATTTACTCAAGCAAGTTGTA 59.519 34.615 4.48 0.00 37.43 2.41
1430 3937 8.210946 TCACGAGGAATATGAAACCAAGATTAT 58.789 33.333 0.00 0.00 0.00 1.28
1450 3957 8.467402 AGAAATTAGTAAACATGAGTCACGAG 57.533 34.615 0.00 0.00 0.00 4.18
1595 4105 6.281405 GTGGTATTGATGTATTTCGACCTCT 58.719 40.000 0.00 0.00 0.00 3.69
1605 4115 1.073284 GGCCGGGTGGTATTGATGTAT 59.927 52.381 2.18 0.00 37.67 2.29
1606 4116 0.470766 GGCCGGGTGGTATTGATGTA 59.529 55.000 2.18 0.00 37.67 2.29
1610 4120 2.285818 AGGGCCGGGTGGTATTGA 60.286 61.111 2.18 0.00 37.67 2.57
1700 4210 1.207593 CGCCTTCACCAAGCTTTCG 59.792 57.895 0.00 0.00 0.00 3.46
1711 4221 3.162666 TCTAGAACCTTCTTCGCCTTCA 58.837 45.455 0.00 0.00 38.70 3.02
1739 4249 0.467290 GTTTGGACAGGTGGGCTTCA 60.467 55.000 0.00 0.00 0.00 3.02
1857 4367 2.005370 TTCACGTGAGGGTAGGAGTT 57.995 50.000 19.11 0.00 34.73 3.01
2004 4515 0.109827 TTCGATGTTGCCACAATGCG 60.110 50.000 0.00 0.00 36.16 4.73
2007 4518 4.724074 AATCATTCGATGTTGCCACAAT 57.276 36.364 0.00 0.00 36.16 2.71
2107 4618 1.102978 AACAAACTGGAGCGCAAACT 58.897 45.000 11.47 0.00 0.00 2.66
2115 4626 6.677781 TGAACACTAAGAAACAAACTGGAG 57.322 37.500 0.00 0.00 0.00 3.86
2166 4677 3.058293 ACATTCGACACACGCATCATTTT 60.058 39.130 0.00 0.00 42.26 1.82
2168 4679 2.076100 ACATTCGACACACGCATCATT 58.924 42.857 0.00 0.00 42.26 2.57
2169 4680 1.394572 CACATTCGACACACGCATCAT 59.605 47.619 0.00 0.00 42.26 2.45
2180 4691 8.995906 GCACTTGTAATATTTTACACATTCGAC 58.004 33.333 8.09 0.00 45.60 4.20
2221 4732 8.650714 GGTCCTACAAAGTATACAAAAACGTAG 58.349 37.037 5.50 6.75 0.00 3.51
2227 4738 7.970102 AGACAGGTCCTACAAAGTATACAAAA 58.030 34.615 5.50 0.00 0.00 2.44
2326 4844 5.188988 AGGGGGACAAACTATTACCTTTC 57.811 43.478 0.00 0.00 0.00 2.62
2393 4941 9.590451 CATGGATGCTTTTGTAATATTTTCTGT 57.410 29.630 0.00 0.00 0.00 3.41
2479 5028 3.118542 ACTTAATTTCGATACGCGGTCC 58.881 45.455 12.47 0.00 41.33 4.46
2480 5029 4.317628 GGAACTTAATTTCGATACGCGGTC 60.318 45.833 12.47 7.44 41.33 4.79
2488 5037 6.959311 CGATGAAAACGGAACTTAATTTCGAT 59.041 34.615 5.64 0.00 42.46 3.59
2500 5049 2.291190 GGTTCCAACGATGAAAACGGAA 59.709 45.455 0.00 0.00 35.94 4.30
2511 5060 3.296836 TCGCGAGGGTTCCAACGA 61.297 61.111 3.71 0.00 0.00 3.85
2609 5160 0.037697 TGCACATCGACGGCTAAACT 60.038 50.000 0.00 0.00 0.00 2.66
2744 5317 4.284178 AGTTAACCAGGATAGTTAGCCGA 58.716 43.478 0.88 0.00 36.72 5.54
2767 5340 2.101770 GCGCGGCGACTACTAAGT 59.898 61.111 28.54 0.00 39.21 2.24
2798 5371 3.045601 AGTTACTGACACATGGACTGC 57.954 47.619 0.00 0.00 0.00 4.40
2814 5430 2.494471 CACACCCTGACCGACATAGTTA 59.506 50.000 0.00 0.00 0.00 2.24
2893 5510 2.089017 GCATAGTCGCACATGCACA 58.911 52.632 4.49 0.00 45.51 4.57
2898 5515 2.363359 TCTCATCAGCATAGTCGCACAT 59.637 45.455 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.