Multiple sequence alignment - TraesCS7D01G191800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G191800 chr7D 100.000 3233 0 0 1 3233 147410347 147413579 0.000000e+00 5971.0
1 TraesCS7D01G191800 chr7D 81.319 273 44 3 1365 1635 101806876 101807143 7.020000e-52 215.0
2 TraesCS7D01G191800 chr7D 89.796 49 5 0 61 109 79630589 79630541 2.690000e-06 63.9
3 TraesCS7D01G191800 chr7D 100.000 31 0 0 73 103 63568294 63568324 1.250000e-04 58.4
4 TraesCS7D01G191800 chr7A 91.257 3111 159 45 168 3203 148655988 148659060 0.000000e+00 4133.0
5 TraesCS7D01G191800 chr7A 76.417 441 83 14 1204 1635 105863312 105863740 5.430000e-53 219.0
6 TraesCS7D01G191800 chr7A 80.889 225 33 7 2714 2931 148810193 148810414 5.550000e-38 169.0
7 TraesCS7D01G191800 chr7A 89.655 58 6 0 1927 1984 148809442 148809499 1.240000e-09 75.0
8 TraesCS7D01G191800 chr7B 92.535 2907 164 31 170 3051 110307619 110310497 0.000000e+00 4117.0
9 TraesCS7D01G191800 chr7B 84.828 290 20 15 169 449 110253226 110253500 1.480000e-68 270.0
10 TraesCS7D01G191800 chr7B 79.433 282 45 5 1365 1635 59311683 59311962 1.530000e-43 187.0
11 TraesCS7D01G191800 chr7B 87.719 114 9 3 2532 2641 110347986 110348098 9.410000e-26 128.0
12 TraesCS7D01G191800 chr7B 89.655 58 6 0 1927 1984 110344761 110344818 1.240000e-09 75.0
13 TraesCS7D01G191800 chr7B 89.796 49 5 0 61 109 26881672 26881624 2.690000e-06 63.9
14 TraesCS7D01G191800 chr7B 86.792 53 7 0 225 277 418853946 418853998 3.480000e-05 60.2
15 TraesCS7D01G191800 chr5D 84.000 200 27 5 86 282 221001743 221001940 1.530000e-43 187.0
16 TraesCS7D01G191800 chr5D 88.136 59 6 1 65 122 300725328 300725386 5.790000e-08 69.4
17 TraesCS7D01G191800 chr4D 80.252 238 42 5 63 299 508266427 508266194 1.190000e-39 174.0
18 TraesCS7D01G191800 chr5A 82.738 168 25 4 90 255 295315184 295315349 2.600000e-31 147.0
19 TraesCS7D01G191800 chr1D 80.808 198 17 10 57 252 282185890 282185712 5.630000e-28 135.0
20 TraesCS7D01G191800 chr2B 96.970 33 0 1 154 186 75758699 75758668 2.000000e-03 54.7
21 TraesCS7D01G191800 chr2D 100.000 28 0 0 71 98 614462890 614462917 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G191800 chr7D 147410347 147413579 3232 False 5971 5971 100.000 1 3233 1 chr7D.!!$F3 3232
1 TraesCS7D01G191800 chr7A 148655988 148659060 3072 False 4133 4133 91.257 168 3203 1 chr7A.!!$F2 3035
2 TraesCS7D01G191800 chr7B 110307619 110310497 2878 False 4117 4117 92.535 170 3051 1 chr7B.!!$F3 2881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.256177 TTGCAACGGGGGCATACATA 59.744 50.0 0.00 0.00 41.58 2.29 F
1827 1882 0.238553 GGCTCGGCAAGTTCAAGAAC 59.761 55.0 4.82 4.82 41.45 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 1954 0.109272 CATCCAAACTGCTGCTGCTG 60.109 55.0 18.66 18.66 42.7 4.41 R
3040 3125 0.179004 TGTCCTTGTCCCAAACGCAT 60.179 50.0 0.00 0.00 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.722526 TTGGAGATGGAAAAGAAGGTCA 57.277 40.909 0.00 0.00 0.00 4.02
22 23 4.934797 TGGAGATGGAAAAGAAGGTCAT 57.065 40.909 0.00 0.00 0.00 3.06
23 24 4.592942 TGGAGATGGAAAAGAAGGTCATG 58.407 43.478 0.00 0.00 0.00 3.07
24 25 3.950395 GGAGATGGAAAAGAAGGTCATGG 59.050 47.826 0.00 0.00 0.00 3.66
25 26 4.324563 GGAGATGGAAAAGAAGGTCATGGA 60.325 45.833 0.00 0.00 0.00 3.41
26 27 5.256474 GAGATGGAAAAGAAGGTCATGGAA 58.744 41.667 0.00 0.00 0.00 3.53
27 28 5.835582 AGATGGAAAAGAAGGTCATGGAAT 58.164 37.500 0.00 0.00 0.00 3.01
28 29 6.973642 AGATGGAAAAGAAGGTCATGGAATA 58.026 36.000 0.00 0.00 0.00 1.75
29 30 7.059156 AGATGGAAAAGAAGGTCATGGAATAG 58.941 38.462 0.00 0.00 0.00 1.73
30 31 4.949856 TGGAAAAGAAGGTCATGGAATAGC 59.050 41.667 0.00 0.00 0.00 2.97
31 32 4.949856 GGAAAAGAAGGTCATGGAATAGCA 59.050 41.667 0.00 0.00 0.00 3.49
32 33 5.595952 GGAAAAGAAGGTCATGGAATAGCAT 59.404 40.000 0.00 0.00 0.00 3.79
33 34 6.772716 GGAAAAGAAGGTCATGGAATAGCATA 59.227 38.462 0.00 0.00 0.00 3.14
34 35 7.255277 GGAAAAGAAGGTCATGGAATAGCATAC 60.255 40.741 0.00 0.00 0.00 2.39
35 36 5.894298 AGAAGGTCATGGAATAGCATACA 57.106 39.130 0.00 0.00 0.00 2.29
36 37 5.615289 AGAAGGTCATGGAATAGCATACAC 58.385 41.667 0.00 0.00 0.00 2.90
37 38 3.995199 AGGTCATGGAATAGCATACACG 58.005 45.455 0.00 0.00 0.00 4.49
38 39 3.641436 AGGTCATGGAATAGCATACACGA 59.359 43.478 0.00 0.00 0.00 4.35
39 40 4.100963 AGGTCATGGAATAGCATACACGAA 59.899 41.667 0.00 0.00 0.00 3.85
40 41 4.449068 GGTCATGGAATAGCATACACGAAG 59.551 45.833 0.00 0.00 0.00 3.79
41 42 4.058124 TCATGGAATAGCATACACGAAGC 58.942 43.478 0.00 0.00 0.00 3.86
42 43 3.819564 TGGAATAGCATACACGAAGCT 57.180 42.857 0.00 0.00 42.14 3.74
43 44 4.137116 TGGAATAGCATACACGAAGCTT 57.863 40.909 0.00 0.00 39.68 3.74
44 45 5.270893 TGGAATAGCATACACGAAGCTTA 57.729 39.130 0.00 0.00 39.68 3.09
45 46 5.289595 TGGAATAGCATACACGAAGCTTAG 58.710 41.667 0.00 0.68 39.68 2.18
46 47 4.150804 GGAATAGCATACACGAAGCTTAGC 59.849 45.833 6.47 0.00 39.68 3.09
47 48 2.969628 AGCATACACGAAGCTTAGCT 57.030 45.000 0.00 0.00 42.56 3.32
62 63 5.714047 AGCTTAGCTTTTAATTTGACCAGC 58.286 37.500 0.00 0.00 33.89 4.85
63 64 5.478332 AGCTTAGCTTTTAATTTGACCAGCT 59.522 36.000 0.00 0.00 40.65 4.24
64 65 6.659242 AGCTTAGCTTTTAATTTGACCAGCTA 59.341 34.615 0.00 0.00 38.54 3.32
65 66 7.176690 AGCTTAGCTTTTAATTTGACCAGCTAA 59.823 33.333 0.00 10.23 43.97 3.09
66 67 7.976175 GCTTAGCTTTTAATTTGACCAGCTAAT 59.024 33.333 10.91 0.00 44.67 1.73
67 68 9.860898 CTTAGCTTTTAATTTGACCAGCTAATT 57.139 29.630 10.91 0.00 44.67 1.40
68 69 9.638239 TTAGCTTTTAATTTGACCAGCTAATTG 57.362 29.630 7.23 0.00 42.26 2.32
69 70 7.670364 AGCTTTTAATTTGACCAGCTAATTGT 58.330 30.769 2.32 0.00 35.83 2.71
70 71 7.814587 AGCTTTTAATTTGACCAGCTAATTGTC 59.185 33.333 2.32 0.89 35.83 3.18
71 72 7.063426 GCTTTTAATTTGACCAGCTAATTGTCC 59.937 37.037 2.32 0.00 34.54 4.02
72 73 4.701956 AATTTGACCAGCTAATTGTCCG 57.298 40.909 0.00 0.00 32.07 4.79
73 74 2.851263 TTGACCAGCTAATTGTCCGT 57.149 45.000 0.00 0.00 0.00 4.69
74 75 2.093306 TGACCAGCTAATTGTCCGTG 57.907 50.000 0.00 0.00 0.00 4.94
75 76 0.727398 GACCAGCTAATTGTCCGTGC 59.273 55.000 0.00 0.00 0.00 5.34
76 77 1.019278 ACCAGCTAATTGTCCGTGCG 61.019 55.000 0.00 0.00 0.00 5.34
77 78 1.019278 CCAGCTAATTGTCCGTGCGT 61.019 55.000 0.00 0.00 0.00 5.24
78 79 0.796312 CAGCTAATTGTCCGTGCGTT 59.204 50.000 0.00 0.00 0.00 4.84
79 80 0.796312 AGCTAATTGTCCGTGCGTTG 59.204 50.000 0.00 0.00 0.00 4.10
80 81 0.793104 GCTAATTGTCCGTGCGTTGC 60.793 55.000 0.00 0.00 0.00 4.17
81 82 0.515127 CTAATTGTCCGTGCGTTGCA 59.485 50.000 0.00 0.00 35.60 4.08
82 83 0.945099 TAATTGTCCGTGCGTTGCAA 59.055 45.000 0.00 0.00 41.47 4.08
83 84 0.593773 AATTGTCCGTGCGTTGCAAC 60.594 50.000 19.89 19.89 41.47 4.17
93 94 2.882132 GTTGCAACGGGGGCATAC 59.118 61.111 14.90 0.00 41.58 2.39
94 95 1.974343 GTTGCAACGGGGGCATACA 60.974 57.895 14.90 0.00 41.58 2.29
95 96 1.000270 TTGCAACGGGGGCATACAT 60.000 52.632 0.00 0.00 41.58 2.29
96 97 0.256177 TTGCAACGGGGGCATACATA 59.744 50.000 0.00 0.00 41.58 2.29
97 98 0.476338 TGCAACGGGGGCATACATAT 59.524 50.000 0.00 0.00 36.11 1.78
98 99 1.133637 TGCAACGGGGGCATACATATT 60.134 47.619 0.00 0.00 36.11 1.28
99 100 1.539827 GCAACGGGGGCATACATATTC 59.460 52.381 0.00 0.00 0.00 1.75
100 101 2.814097 GCAACGGGGGCATACATATTCT 60.814 50.000 0.00 0.00 0.00 2.40
101 102 3.558321 GCAACGGGGGCATACATATTCTA 60.558 47.826 0.00 0.00 0.00 2.10
102 103 4.253685 CAACGGGGGCATACATATTCTAG 58.746 47.826 0.00 0.00 0.00 2.43
103 104 2.236395 ACGGGGGCATACATATTCTAGC 59.764 50.000 0.00 0.00 0.00 3.42
104 105 2.738643 CGGGGGCATACATATTCTAGCG 60.739 54.545 0.00 0.00 0.00 4.26
105 106 2.420129 GGGGGCATACATATTCTAGCGG 60.420 54.545 0.00 0.00 0.00 5.52
106 107 2.236395 GGGGCATACATATTCTAGCGGT 59.764 50.000 0.00 0.00 0.00 5.68
107 108 3.522553 GGGCATACATATTCTAGCGGTC 58.477 50.000 0.00 0.00 0.00 4.79
108 109 3.522553 GGCATACATATTCTAGCGGTCC 58.477 50.000 0.00 0.00 0.00 4.46
109 110 3.056107 GGCATACATATTCTAGCGGTCCA 60.056 47.826 0.00 0.00 0.00 4.02
110 111 4.562757 GGCATACATATTCTAGCGGTCCAA 60.563 45.833 0.00 0.00 0.00 3.53
111 112 5.178797 GCATACATATTCTAGCGGTCCAAT 58.821 41.667 0.00 0.00 0.00 3.16
112 113 6.338146 GCATACATATTCTAGCGGTCCAATA 58.662 40.000 0.00 0.00 0.00 1.90
113 114 6.255887 GCATACATATTCTAGCGGTCCAATAC 59.744 42.308 0.00 0.00 0.00 1.89
114 115 5.148651 ACATATTCTAGCGGTCCAATACC 57.851 43.478 0.00 0.00 45.77 2.73
125 126 3.757745 GTCCAATACCAATTGTGTCCG 57.242 47.619 4.43 0.00 40.84 4.79
126 127 3.340034 GTCCAATACCAATTGTGTCCGA 58.660 45.455 4.43 0.00 40.84 4.55
127 128 3.126343 GTCCAATACCAATTGTGTCCGAC 59.874 47.826 4.43 0.00 40.84 4.79
128 129 3.078097 CCAATACCAATTGTGTCCGACA 58.922 45.455 4.43 0.00 40.84 4.35
129 130 3.694072 CCAATACCAATTGTGTCCGACAT 59.306 43.478 4.13 0.00 40.84 3.06
130 131 4.878971 CCAATACCAATTGTGTCCGACATA 59.121 41.667 4.13 0.00 40.84 2.29
131 132 5.355630 CCAATACCAATTGTGTCCGACATAA 59.644 40.000 12.47 12.47 40.84 1.90
132 133 6.127869 CCAATACCAATTGTGTCCGACATAAA 60.128 38.462 13.87 8.14 40.84 1.40
133 134 7.416213 CCAATACCAATTGTGTCCGACATAAAT 60.416 37.037 13.87 9.87 40.84 1.40
134 135 5.560966 ACCAATTGTGTCCGACATAAATC 57.439 39.130 13.87 0.00 33.03 2.17
135 136 5.253330 ACCAATTGTGTCCGACATAAATCT 58.747 37.500 13.87 0.94 33.03 2.40
136 137 5.710099 ACCAATTGTGTCCGACATAAATCTT 59.290 36.000 13.87 2.82 33.03 2.40
137 138 6.882140 ACCAATTGTGTCCGACATAAATCTTA 59.118 34.615 13.87 0.00 33.03 2.10
138 139 7.148306 ACCAATTGTGTCCGACATAAATCTTAC 60.148 37.037 13.87 0.00 33.03 2.34
139 140 7.148323 CCAATTGTGTCCGACATAAATCTTACA 60.148 37.037 13.87 0.00 33.03 2.41
140 141 6.715344 TTGTGTCCGACATAAATCTTACAC 57.285 37.500 8.14 0.00 33.40 2.90
141 142 4.860352 TGTGTCCGACATAAATCTTACACG 59.140 41.667 4.13 0.00 35.91 4.49
142 143 3.861113 TGTCCGACATAAATCTTACACGC 59.139 43.478 0.00 0.00 0.00 5.34
143 144 3.861113 GTCCGACATAAATCTTACACGCA 59.139 43.478 0.00 0.00 0.00 5.24
144 145 4.506654 GTCCGACATAAATCTTACACGCAT 59.493 41.667 0.00 0.00 0.00 4.73
145 146 4.743151 TCCGACATAAATCTTACACGCATC 59.257 41.667 0.00 0.00 0.00 3.91
146 147 4.506288 CCGACATAAATCTTACACGCATCA 59.494 41.667 0.00 0.00 0.00 3.07
147 148 5.177511 CCGACATAAATCTTACACGCATCAT 59.822 40.000 0.00 0.00 0.00 2.45
148 149 6.364976 CCGACATAAATCTTACACGCATCATA 59.635 38.462 0.00 0.00 0.00 2.15
149 150 7.063426 CCGACATAAATCTTACACGCATCATAT 59.937 37.037 0.00 0.00 0.00 1.78
150 151 8.435430 CGACATAAATCTTACACGCATCATATT 58.565 33.333 0.00 0.00 0.00 1.28
151 152 9.746711 GACATAAATCTTACACGCATCATATTC 57.253 33.333 0.00 0.00 0.00 1.75
152 153 9.494271 ACATAAATCTTACACGCATCATATTCT 57.506 29.630 0.00 0.00 0.00 2.40
162 163 8.621532 ACACGCATCATATTCTATATTTTGGT 57.378 30.769 0.00 0.00 0.00 3.67
163 164 9.719355 ACACGCATCATATTCTATATTTTGGTA 57.281 29.630 0.00 0.00 0.00 3.25
235 240 9.974980 TTGATTTAGGTGAAATTTTGGTAAGAC 57.025 29.630 0.00 0.00 37.90 3.01
255 260 9.495754 GTAAGACTTGATTTGATTTGAGTATGC 57.504 33.333 0.00 0.00 0.00 3.14
269 275 5.772393 TGAGTATGCTTAGGGGAAAGAAA 57.228 39.130 0.00 0.00 0.00 2.52
271 277 5.117406 AGTATGCTTAGGGGAAAGAAAGG 57.883 43.478 0.00 0.00 0.00 3.11
356 363 6.476243 TTTCTTTCTATTTACACGGTGCTC 57.524 37.500 8.30 0.00 0.00 4.26
525 563 1.153823 CTACTGTCCTCGCAACCGG 60.154 63.158 0.00 0.00 34.56 5.28
526 564 2.558554 CTACTGTCCTCGCAACCGGG 62.559 65.000 6.32 0.00 34.56 5.73
710 761 2.041405 CTCCCCTCCACTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
728 782 4.704833 CTCCCCACACAGCCACCG 62.705 72.222 0.00 0.00 0.00 4.94
730 784 4.263572 CCCCACACAGCCACCGAA 62.264 66.667 0.00 0.00 0.00 4.30
731 785 2.669569 CCCACACAGCCACCGAAG 60.670 66.667 0.00 0.00 0.00 3.79
1410 1465 1.341531 CTGTTCCACCTTCACGACTCT 59.658 52.381 0.00 0.00 0.00 3.24
1551 1606 3.394836 GAGGACAGGCTCCGGCTT 61.395 66.667 0.00 0.00 45.10 4.35
1584 1639 1.675641 GCACGCCTTCCACCTGAAT 60.676 57.895 0.00 0.00 31.06 2.57
1827 1882 0.238553 GGCTCGGCAAGTTCAAGAAC 59.761 55.000 4.82 4.82 41.45 3.01
1854 1909 2.270986 CCAGGGTGCTGTTGAAGGC 61.271 63.158 0.00 0.00 0.00 4.35
1899 1954 0.759060 GGAGGGAGGAAGGAGAGAGC 60.759 65.000 0.00 0.00 0.00 4.09
2064 2119 3.376859 GTGTGAATGCCGACATTATGGAA 59.623 43.478 0.00 0.00 46.59 3.53
2083 2138 3.996363 GGAAGGAAAGAAAATTTGCGCAT 59.004 39.130 12.75 0.00 0.00 4.73
2227 2282 2.375146 GCACCGGGGATAAATTGAACT 58.625 47.619 8.67 0.00 0.00 3.01
2301 2356 5.878116 AGTGCTACGCCATTAATTTCTTACA 59.122 36.000 0.00 0.00 0.00 2.41
2378 2433 4.150897 TCATGGGGAGATAAGTTTTCCG 57.849 45.455 0.00 0.00 31.59 4.30
2379 2434 3.521937 TCATGGGGAGATAAGTTTTCCGT 59.478 43.478 0.00 0.00 31.59 4.69
2380 2435 4.717778 TCATGGGGAGATAAGTTTTCCGTA 59.282 41.667 0.00 0.00 31.59 4.02
2475 2530 4.580167 TGCTTTGCTTGTGTTCTTGTATCT 59.420 37.500 0.00 0.00 0.00 1.98
2487 2542 7.042051 TGTGTTCTTGTATCTGTTTGAAGCTAC 60.042 37.037 0.00 0.00 0.00 3.58
2506 2561 6.352516 AGCTACCTTCATATTCCTGAAACTG 58.647 40.000 0.00 0.00 34.86 3.16
2507 2562 5.008118 GCTACCTTCATATTCCTGAAACTGC 59.992 44.000 0.00 0.00 34.86 4.40
2546 2601 7.862873 GCTCAAAGTAAAGTTAGCATTGACTTT 59.137 33.333 6.69 6.69 45.28 2.66
2575 2630 9.171877 AGTTCCAATCTTGTCATTCTTTCTATC 57.828 33.333 0.00 0.00 0.00 2.08
2589 2644 9.288124 CATTCTTTCTATCGCAGTAGATGATAG 57.712 37.037 2.78 2.78 41.78 2.08
2629 2684 9.204570 TGAGTTTTGCTTCAGTACTAATTAGAC 57.795 33.333 19.38 12.07 0.00 2.59
2635 2690 8.135382 TGCTTCAGTACTAATTAGACCTTCTT 57.865 34.615 19.38 0.00 0.00 2.52
2738 2803 4.848562 TGCTATCACATAGAAGGGTACG 57.151 45.455 0.00 0.00 34.77 3.67
2740 2805 3.056749 GCTATCACATAGAAGGGTACGGG 60.057 52.174 0.00 0.00 34.77 5.28
2742 2807 0.756903 CACATAGAAGGGTACGGGGG 59.243 60.000 0.00 0.00 0.00 5.40
2762 2828 6.517013 GGGGGAAATCTTCTTTCTATAGGT 57.483 41.667 0.00 0.00 0.00 3.08
2764 2830 7.451732 GGGGGAAATCTTCTTTCTATAGGTAC 58.548 42.308 0.00 0.00 0.00 3.34
2765 2831 7.072076 GGGGGAAATCTTCTTTCTATAGGTACA 59.928 40.741 0.00 0.00 0.00 2.90
2788 2854 6.014669 ACAAATGCTTAGGGCTAAATGAAACA 60.015 34.615 0.00 0.00 42.39 2.83
2800 2866 7.398746 GGCTAAATGAAACAAACAACTCAAAC 58.601 34.615 0.00 0.00 0.00 2.93
2801 2867 7.398746 GCTAAATGAAACAAACAACTCAAACC 58.601 34.615 0.00 0.00 0.00 3.27
2877 2943 3.068165 GGTTCTTGTTTCAGTTTGGAGGG 59.932 47.826 0.00 0.00 0.00 4.30
2899 2973 3.084039 TGGTGCAAATGTCTTGAGATCC 58.916 45.455 0.00 0.00 0.00 3.36
2906 2980 4.686191 AATGTCTTGAGATCCTGCCTAG 57.314 45.455 0.00 0.00 0.00 3.02
2920 2994 3.136763 CTGCCTAGTTGTGATGCATAGG 58.863 50.000 0.00 1.53 34.47 2.57
2922 2996 2.486191 GCCTAGTTGTGATGCATAGGCT 60.486 50.000 21.86 9.61 45.61 4.58
2931 3005 3.806521 GTGATGCATAGGCTAGACACTTG 59.193 47.826 0.00 0.00 41.91 3.16
2950 3024 3.737559 TGTGGATGCTGATTAAAGGGT 57.262 42.857 0.00 0.00 0.00 4.34
2954 3028 3.138283 TGGATGCTGATTAAAGGGTAGGG 59.862 47.826 0.00 0.00 0.00 3.53
2960 3034 2.169769 TGATTAAAGGGTAGGGCACTCG 59.830 50.000 0.00 0.00 30.38 4.18
3009 3083 3.372554 GAGTAGGCGGGCACTCACC 62.373 68.421 20.75 3.72 40.74 4.02
3019 3093 1.339727 GGGCACTCACCGGATAAGTTT 60.340 52.381 9.46 0.00 0.00 2.66
3025 3099 3.270877 CTCACCGGATAAGTTTGGAAGG 58.729 50.000 9.46 0.00 0.00 3.46
3028 3102 1.014352 CGGATAAGTTTGGAAGGCGG 58.986 55.000 0.00 0.00 0.00 6.13
3040 3125 5.633655 TTGGAAGGCGGGTAGATTATTTA 57.366 39.130 0.00 0.00 0.00 1.40
3043 3128 4.395231 GGAAGGCGGGTAGATTATTTATGC 59.605 45.833 0.00 0.00 0.00 3.14
3074 3159 4.058817 CAAGGACACAAGGTCTAACTCAC 58.941 47.826 0.00 0.00 46.16 3.51
3084 3169 8.470805 CACAAGGTCTAACTCACAGTATCTATT 58.529 37.037 0.00 0.00 0.00 1.73
3085 3170 9.036980 ACAAGGTCTAACTCACAGTATCTATTT 57.963 33.333 0.00 0.00 0.00 1.40
3086 3171 9.877178 CAAGGTCTAACTCACAGTATCTATTTT 57.123 33.333 0.00 0.00 0.00 1.82
3125 3210 8.573885 CAGGTCATTATCTGAATTGTTGCATAT 58.426 33.333 0.00 0.00 35.72 1.78
3133 3218 4.757594 TGAATTGTTGCATATCCCTTTGC 58.242 39.130 0.00 0.00 39.33 3.68
3144 3229 5.472137 GCATATCCCTTTGCGAATACCTTTA 59.528 40.000 0.00 0.00 0.00 1.85
3149 3234 5.530915 TCCCTTTGCGAATACCTTTATGATG 59.469 40.000 0.00 0.00 0.00 3.07
3152 3237 6.389830 TTTGCGAATACCTTTATGATGCAT 57.610 33.333 0.00 0.00 0.00 3.96
3185 3270 8.217111 TGATATGTCTGAGCAAAACCCATATTA 58.783 33.333 0.00 0.00 0.00 0.98
3193 3278 9.561069 CTGAGCAAAACCCATATTACTATTACT 57.439 33.333 0.00 0.00 0.00 2.24
3210 3295 8.289939 ACTATTACTAGCAACTGTACTAAGCA 57.710 34.615 0.00 0.00 0.00 3.91
3211 3296 8.746530 ACTATTACTAGCAACTGTACTAAGCAA 58.253 33.333 0.00 0.00 0.00 3.91
3212 3297 9.582431 CTATTACTAGCAACTGTACTAAGCAAA 57.418 33.333 0.00 0.00 0.00 3.68
3213 3298 8.842358 ATTACTAGCAACTGTACTAAGCAAAA 57.158 30.769 0.00 0.00 0.00 2.44
3214 3299 8.842358 TTACTAGCAACTGTACTAAGCAAAAT 57.158 30.769 0.00 0.00 0.00 1.82
3215 3300 9.932207 TTACTAGCAACTGTACTAAGCAAAATA 57.068 29.630 0.00 0.00 0.00 1.40
3216 3301 8.842358 ACTAGCAACTGTACTAAGCAAAATAA 57.158 30.769 0.00 0.00 0.00 1.40
3217 3302 9.280174 ACTAGCAACTGTACTAAGCAAAATAAA 57.720 29.630 0.00 0.00 0.00 1.40
3218 3303 9.543018 CTAGCAACTGTACTAAGCAAAATAAAC 57.457 33.333 0.00 0.00 0.00 2.01
3219 3304 8.166422 AGCAACTGTACTAAGCAAAATAAACT 57.834 30.769 0.00 0.00 0.00 2.66
3220 3305 8.076178 AGCAACTGTACTAAGCAAAATAAACTG 58.924 33.333 0.00 0.00 0.00 3.16
3221 3306 7.860872 GCAACTGTACTAAGCAAAATAAACTGT 59.139 33.333 0.00 0.00 0.00 3.55
3222 3307 9.730420 CAACTGTACTAAGCAAAATAAACTGTT 57.270 29.630 0.00 0.00 0.00 3.16
3226 3311 9.866936 TGTACTAAGCAAAATAAACTGTTAACG 57.133 29.630 0.26 0.00 0.00 3.18
3227 3312 7.847166 ACTAAGCAAAATAAACTGTTAACGC 57.153 32.000 0.26 0.00 0.00 4.84
3228 3313 7.419204 ACTAAGCAAAATAAACTGTTAACGCA 58.581 30.769 0.26 0.00 0.00 5.24
3229 3314 8.079809 ACTAAGCAAAATAAACTGTTAACGCAT 58.920 29.630 0.26 0.00 0.00 4.73
3230 3315 9.549509 CTAAGCAAAATAAACTGTTAACGCATA 57.450 29.630 0.26 0.00 0.00 3.14
3231 3316 8.804688 AAGCAAAATAAACTGTTAACGCATAA 57.195 26.923 0.26 0.00 0.00 1.90
3232 3317 8.222984 AGCAAAATAAACTGTTAACGCATAAC 57.777 30.769 0.26 5.09 43.52 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.950395 CCATGACCTTCTTTTCCATCTCC 59.050 47.826 0.00 0.00 0.00 3.71
3 4 4.848357 TCCATGACCTTCTTTTCCATCTC 58.152 43.478 0.00 0.00 0.00 2.75
4 5 4.934797 TCCATGACCTTCTTTTCCATCT 57.065 40.909 0.00 0.00 0.00 2.90
5 6 6.238869 GCTATTCCATGACCTTCTTTTCCATC 60.239 42.308 0.00 0.00 0.00 3.51
6 7 5.595952 GCTATTCCATGACCTTCTTTTCCAT 59.404 40.000 0.00 0.00 0.00 3.41
7 8 4.949856 GCTATTCCATGACCTTCTTTTCCA 59.050 41.667 0.00 0.00 0.00 3.53
8 9 4.949856 TGCTATTCCATGACCTTCTTTTCC 59.050 41.667 0.00 0.00 0.00 3.13
9 10 6.705863 ATGCTATTCCATGACCTTCTTTTC 57.294 37.500 0.00 0.00 0.00 2.29
10 11 7.067494 GTGTATGCTATTCCATGACCTTCTTTT 59.933 37.037 0.00 0.00 0.00 2.27
11 12 6.543831 GTGTATGCTATTCCATGACCTTCTTT 59.456 38.462 0.00 0.00 0.00 2.52
12 13 6.058183 GTGTATGCTATTCCATGACCTTCTT 58.942 40.000 0.00 0.00 0.00 2.52
13 14 5.615289 GTGTATGCTATTCCATGACCTTCT 58.385 41.667 0.00 0.00 0.00 2.85
14 15 4.449068 CGTGTATGCTATTCCATGACCTTC 59.551 45.833 0.00 0.00 0.00 3.46
15 16 4.100963 TCGTGTATGCTATTCCATGACCTT 59.899 41.667 0.00 0.00 0.00 3.50
16 17 3.641436 TCGTGTATGCTATTCCATGACCT 59.359 43.478 0.00 0.00 0.00 3.85
17 18 3.990092 TCGTGTATGCTATTCCATGACC 58.010 45.455 0.00 0.00 0.00 4.02
18 19 4.084328 GCTTCGTGTATGCTATTCCATGAC 60.084 45.833 0.00 0.00 0.00 3.06
19 20 4.058124 GCTTCGTGTATGCTATTCCATGA 58.942 43.478 0.00 0.00 0.00 3.07
20 21 4.060900 AGCTTCGTGTATGCTATTCCATG 58.939 43.478 0.00 0.00 36.86 3.66
21 22 4.342862 AGCTTCGTGTATGCTATTCCAT 57.657 40.909 0.00 0.00 36.86 3.41
22 23 3.819564 AGCTTCGTGTATGCTATTCCA 57.180 42.857 0.00 0.00 36.86 3.53
23 24 4.150804 GCTAAGCTTCGTGTATGCTATTCC 59.849 45.833 0.00 0.00 37.60 3.01
24 25 4.985409 AGCTAAGCTTCGTGTATGCTATTC 59.015 41.667 0.00 0.00 37.60 1.75
25 26 4.950050 AGCTAAGCTTCGTGTATGCTATT 58.050 39.130 0.00 0.00 37.60 1.73
26 27 4.592485 AGCTAAGCTTCGTGTATGCTAT 57.408 40.909 0.00 0.00 37.60 2.97
27 28 4.386867 AAGCTAAGCTTCGTGTATGCTA 57.613 40.909 0.00 0.00 46.77 3.49
28 29 2.969628 AGCTAAGCTTCGTGTATGCT 57.030 45.000 0.00 0.00 40.15 3.79
39 40 5.478332 AGCTGGTCAAATTAAAAGCTAAGCT 59.522 36.000 0.00 0.00 42.56 3.74
40 41 5.714047 AGCTGGTCAAATTAAAAGCTAAGC 58.286 37.500 0.00 0.00 39.14 3.09
43 44 8.802267 ACAATTAGCTGGTCAAATTAAAAGCTA 58.198 29.630 0.00 0.00 41.11 3.32
44 45 7.670364 ACAATTAGCTGGTCAAATTAAAAGCT 58.330 30.769 0.00 0.00 43.15 3.74
45 46 7.063426 GGACAATTAGCTGGTCAAATTAAAAGC 59.937 37.037 0.00 0.00 33.26 3.51
46 47 7.273381 CGGACAATTAGCTGGTCAAATTAAAAG 59.727 37.037 0.00 0.00 33.26 2.27
47 48 7.087639 CGGACAATTAGCTGGTCAAATTAAAA 58.912 34.615 0.00 0.00 33.26 1.52
48 49 6.207810 ACGGACAATTAGCTGGTCAAATTAAA 59.792 34.615 0.00 0.00 33.26 1.52
49 50 5.708230 ACGGACAATTAGCTGGTCAAATTAA 59.292 36.000 0.00 0.00 33.26 1.40
50 51 5.123186 CACGGACAATTAGCTGGTCAAATTA 59.877 40.000 0.00 0.00 33.26 1.40
51 52 4.079253 ACGGACAATTAGCTGGTCAAATT 58.921 39.130 0.00 0.00 33.26 1.82
52 53 3.440173 CACGGACAATTAGCTGGTCAAAT 59.560 43.478 0.00 0.00 33.26 2.32
53 54 2.811431 CACGGACAATTAGCTGGTCAAA 59.189 45.455 0.00 0.00 33.26 2.69
54 55 2.422597 CACGGACAATTAGCTGGTCAA 58.577 47.619 0.00 0.00 33.26 3.18
55 56 1.943968 GCACGGACAATTAGCTGGTCA 60.944 52.381 0.00 0.00 33.26 4.02
56 57 0.727398 GCACGGACAATTAGCTGGTC 59.273 55.000 0.00 0.00 0.00 4.02
57 58 1.019278 CGCACGGACAATTAGCTGGT 61.019 55.000 0.00 0.00 0.00 4.00
58 59 1.019278 ACGCACGGACAATTAGCTGG 61.019 55.000 0.00 0.00 0.00 4.85
59 60 0.796312 AACGCACGGACAATTAGCTG 59.204 50.000 0.00 0.00 0.00 4.24
60 61 0.796312 CAACGCACGGACAATTAGCT 59.204 50.000 0.00 0.00 0.00 3.32
61 62 0.793104 GCAACGCACGGACAATTAGC 60.793 55.000 0.00 0.00 0.00 3.09
62 63 0.515127 TGCAACGCACGGACAATTAG 59.485 50.000 0.00 0.00 31.71 1.73
63 64 0.945099 TTGCAACGCACGGACAATTA 59.055 45.000 0.00 0.00 38.71 1.40
64 65 0.593773 GTTGCAACGCACGGACAATT 60.594 50.000 14.90 0.00 38.71 2.32
65 66 1.008995 GTTGCAACGCACGGACAAT 60.009 52.632 14.90 0.00 38.71 2.71
66 67 2.405594 GTTGCAACGCACGGACAA 59.594 55.556 14.90 0.00 38.71 3.18
67 68 3.931130 CGTTGCAACGCACGGACA 61.931 61.111 35.89 0.00 46.06 4.02
76 77 1.319614 ATGTATGCCCCCGTTGCAAC 61.320 55.000 19.89 19.89 42.92 4.17
77 78 0.256177 TATGTATGCCCCCGTTGCAA 59.744 50.000 0.00 0.00 42.92 4.08
78 79 0.476338 ATATGTATGCCCCCGTTGCA 59.524 50.000 0.00 0.00 43.97 4.08
79 80 1.539827 GAATATGTATGCCCCCGTTGC 59.460 52.381 0.00 0.00 0.00 4.17
80 81 3.140325 AGAATATGTATGCCCCCGTTG 57.860 47.619 0.00 0.00 0.00 4.10
81 82 3.307480 GCTAGAATATGTATGCCCCCGTT 60.307 47.826 0.00 0.00 0.00 4.44
82 83 2.236395 GCTAGAATATGTATGCCCCCGT 59.764 50.000 0.00 0.00 0.00 5.28
83 84 2.738643 CGCTAGAATATGTATGCCCCCG 60.739 54.545 0.00 0.00 0.00 5.73
84 85 2.420129 CCGCTAGAATATGTATGCCCCC 60.420 54.545 0.00 0.00 0.00 5.40
85 86 2.236395 ACCGCTAGAATATGTATGCCCC 59.764 50.000 0.00 0.00 0.00 5.80
86 87 3.522553 GACCGCTAGAATATGTATGCCC 58.477 50.000 0.00 0.00 0.00 5.36
87 88 3.056107 TGGACCGCTAGAATATGTATGCC 60.056 47.826 0.00 0.00 0.00 4.40
88 89 4.188247 TGGACCGCTAGAATATGTATGC 57.812 45.455 0.00 0.00 0.00 3.14
89 90 6.757010 GGTATTGGACCGCTAGAATATGTATG 59.243 42.308 0.00 0.00 38.87 2.39
90 91 6.875076 GGTATTGGACCGCTAGAATATGTAT 58.125 40.000 0.00 0.00 38.87 2.29
91 92 6.276832 GGTATTGGACCGCTAGAATATGTA 57.723 41.667 0.00 0.00 38.87 2.29
92 93 5.148651 GGTATTGGACCGCTAGAATATGT 57.851 43.478 0.00 0.00 38.87 2.29
105 106 3.126343 GTCGGACACAATTGGTATTGGAC 59.874 47.826 10.83 6.27 44.42 4.02
106 107 3.244596 TGTCGGACACAATTGGTATTGGA 60.245 43.478 10.83 0.00 44.42 3.53
107 108 3.078097 TGTCGGACACAATTGGTATTGG 58.922 45.455 10.83 0.00 44.42 3.16
108 109 4.963276 ATGTCGGACACAATTGGTATTG 57.037 40.909 13.92 1.13 45.39 1.90
109 110 7.556275 AGATTTATGTCGGACACAATTGGTATT 59.444 33.333 13.92 0.00 38.97 1.89
110 111 7.054124 AGATTTATGTCGGACACAATTGGTAT 58.946 34.615 13.92 0.00 38.97 2.73
111 112 6.411376 AGATTTATGTCGGACACAATTGGTA 58.589 36.000 13.92 0.00 38.97 3.25
112 113 5.253330 AGATTTATGTCGGACACAATTGGT 58.747 37.500 13.92 4.83 38.97 3.67
113 114 5.818136 AGATTTATGTCGGACACAATTGG 57.182 39.130 13.92 1.35 38.97 3.16
114 115 7.692291 GTGTAAGATTTATGTCGGACACAATTG 59.308 37.037 13.92 3.24 38.97 2.32
115 116 7.412563 CGTGTAAGATTTATGTCGGACACAATT 60.413 37.037 13.92 4.53 38.97 2.32
116 117 6.035650 CGTGTAAGATTTATGTCGGACACAAT 59.964 38.462 13.92 14.14 38.97 2.71
117 118 5.346551 CGTGTAAGATTTATGTCGGACACAA 59.653 40.000 13.92 5.16 38.97 3.33
118 119 4.860352 CGTGTAAGATTTATGTCGGACACA 59.140 41.667 13.92 0.00 37.92 3.72
119 120 4.259690 GCGTGTAAGATTTATGTCGGACAC 60.260 45.833 13.92 0.00 36.29 3.67
120 121 3.861113 GCGTGTAAGATTTATGTCGGACA 59.139 43.478 14.01 14.01 0.00 4.02
121 122 3.861113 TGCGTGTAAGATTTATGTCGGAC 59.139 43.478 0.00 0.00 0.00 4.79
122 123 4.112716 TGCGTGTAAGATTTATGTCGGA 57.887 40.909 0.00 0.00 0.00 4.55
123 124 4.506288 TGATGCGTGTAAGATTTATGTCGG 59.494 41.667 0.00 0.00 0.00 4.79
124 125 5.635549 TGATGCGTGTAAGATTTATGTCG 57.364 39.130 0.00 0.00 0.00 4.35
125 126 9.746711 GAATATGATGCGTGTAAGATTTATGTC 57.253 33.333 0.00 0.00 0.00 3.06
126 127 9.494271 AGAATATGATGCGTGTAAGATTTATGT 57.506 29.630 0.00 0.00 0.00 2.29
136 137 9.719355 ACCAAAATATAGAATATGATGCGTGTA 57.281 29.630 0.00 0.00 0.00 2.90
137 138 8.621532 ACCAAAATATAGAATATGATGCGTGT 57.378 30.769 0.00 0.00 0.00 4.49
167 168 9.056005 CCCTATCGATACTGAAATCAAATCAAA 57.944 33.333 0.00 0.00 0.00 2.69
168 169 8.428852 TCCCTATCGATACTGAAATCAAATCAA 58.571 33.333 0.00 0.00 0.00 2.57
180 181 8.718102 TTTTCTTTCTTTCCCTATCGATACTG 57.282 34.615 0.00 0.00 0.00 2.74
186 187 8.349983 TCAAAACTTTTCTTTCTTTCCCTATCG 58.650 33.333 0.00 0.00 0.00 2.92
217 222 8.764287 CAAATCAAGTCTTACCAAAATTTCACC 58.236 33.333 0.00 0.00 0.00 4.02
235 240 8.133627 CCCTAAGCATACTCAAATCAAATCAAG 58.866 37.037 0.00 0.00 0.00 3.02
255 260 5.707764 CAGAACTTCCTTTCTTTCCCCTAAG 59.292 44.000 0.00 0.00 33.31 2.18
269 275 1.902508 TCGCCTCAATCAGAACTTCCT 59.097 47.619 0.00 0.00 0.00 3.36
271 277 3.238108 TCTCGCCTCAATCAGAACTTC 57.762 47.619 0.00 0.00 0.00 3.01
710 761 4.351054 GGTGGCTGTGTGGGGAGG 62.351 72.222 0.00 0.00 0.00 4.30
728 782 1.025041 GATTGCGGTGGGAATCCTTC 58.975 55.000 0.00 0.00 43.05 3.46
729 783 3.191182 GATTGCGGTGGGAATCCTT 57.809 52.632 0.00 0.00 43.05 3.36
730 784 4.986467 GATTGCGGTGGGAATCCT 57.014 55.556 0.00 0.00 43.05 3.24
742 796 2.110006 GAGGAGGCGGAGGATTGC 59.890 66.667 0.00 0.00 0.00 3.56
815 869 1.449778 GGCGCTAGGGACCAAGAAC 60.450 63.158 11.61 0.00 0.00 3.01
1584 1639 1.925415 GCAGCCATGTGTCGATGCAA 61.925 55.000 5.24 0.00 33.92 4.08
1668 1723 1.996898 TCGAAATCGAACATCGGGTTG 59.003 47.619 14.99 0.00 46.30 3.77
1695 1750 4.035102 AGCCGCCCTTCCTCCAAC 62.035 66.667 0.00 0.00 0.00 3.77
1782 1837 0.790814 GGAACACTCTTTTCTCGGCG 59.209 55.000 0.00 0.00 0.00 6.46
1854 1909 3.554692 GCAGAATCGCCGTGTCCG 61.555 66.667 0.00 0.00 0.00 4.79
1899 1954 0.109272 CATCCAAACTGCTGCTGCTG 60.109 55.000 18.66 18.66 42.70 4.41
2064 2119 3.006752 TCCATGCGCAAATTTTCTTTCCT 59.993 39.130 17.11 0.00 0.00 3.36
2083 2138 1.073923 GAAGCTCTCCCCTTTGTTCCA 59.926 52.381 0.00 0.00 0.00 3.53
2112 2167 5.065731 CAGATTAGACCACTGCCAAATCTTC 59.934 44.000 0.00 0.00 32.76 2.87
2155 2210 3.940221 GCTTCTGAACAATCATCTGAGCT 59.060 43.478 0.00 0.00 34.37 4.09
2227 2282 4.340950 TCACAGTACAGAGTCACATCACAA 59.659 41.667 0.00 0.00 0.00 3.33
2333 2388 9.632807 TGAGATTAACCAATTCCAATTAAAACG 57.367 29.630 0.00 0.00 0.00 3.60
2376 2431 1.112113 AGGTGGCATGACTACTACGG 58.888 55.000 0.00 0.00 0.00 4.02
2378 2433 4.159879 ACAGTAAGGTGGCATGACTACTAC 59.840 45.833 0.00 0.00 0.00 2.73
2379 2434 4.350245 ACAGTAAGGTGGCATGACTACTA 58.650 43.478 0.00 0.00 0.00 1.82
2380 2435 3.173965 ACAGTAAGGTGGCATGACTACT 58.826 45.455 0.00 0.00 0.00 2.57
2475 2530 6.599244 CAGGAATATGAAGGTAGCTTCAAACA 59.401 38.462 33.94 23.78 45.07 2.83
2487 2542 4.946157 AGTGCAGTTTCAGGAATATGAAGG 59.054 41.667 0.00 0.00 40.16 3.46
2506 2561 5.113502 ACTTTGAGCATTCTTGTAAGTGC 57.886 39.130 0.00 0.45 37.84 4.40
2507 2562 8.345565 ACTTTACTTTGAGCATTCTTGTAAGTG 58.654 33.333 0.00 0.00 0.00 3.16
2546 2601 9.354673 AGAAAGAATGACAAGATTGGAACTAAA 57.645 29.630 0.00 0.00 0.00 1.85
2709 2774 8.754080 ACCCTTCTATGTGATAGCATATAGTTC 58.246 37.037 20.03 0.00 43.06 3.01
2719 2784 3.510360 CCCCGTACCCTTCTATGTGATAG 59.490 52.174 0.00 0.00 0.00 2.08
2724 2789 3.235628 CCCCCGTACCCTTCTATGT 57.764 57.895 0.00 0.00 0.00 2.29
2740 2805 8.030913 TGTACCTATAGAAAGAAGATTTCCCC 57.969 38.462 0.00 0.00 0.00 4.81
2788 2854 2.456577 AGCACCAGGTTTGAGTTGTTT 58.543 42.857 0.00 0.00 0.00 2.83
2800 2866 2.289072 CCACCGATAAGATAGCACCAGG 60.289 54.545 0.00 0.00 0.00 4.45
2801 2867 2.365617 ACCACCGATAAGATAGCACCAG 59.634 50.000 0.00 0.00 0.00 4.00
2877 2943 3.119708 GGATCTCAAGACATTTGCACCAC 60.120 47.826 0.00 0.00 0.00 4.16
2899 2973 3.136763 CCTATGCATCACAACTAGGCAG 58.863 50.000 0.19 0.00 37.96 4.85
2906 2980 3.557595 GTGTCTAGCCTATGCATCACAAC 59.442 47.826 0.19 0.00 41.13 3.32
2920 2994 2.005451 CAGCATCCACAAGTGTCTAGC 58.995 52.381 0.00 0.00 0.00 3.42
2922 2996 4.558226 AATCAGCATCCACAAGTGTCTA 57.442 40.909 0.00 0.00 0.00 2.59
2931 3005 4.137543 CCTACCCTTTAATCAGCATCCAC 58.862 47.826 0.00 0.00 0.00 4.02
2960 3034 3.622060 TTTCGGTAGCAGCCCCAGC 62.622 63.158 0.00 0.00 40.32 4.85
3009 3083 1.014352 CCGCCTTCCAAACTTATCCG 58.986 55.000 0.00 0.00 0.00 4.18
3019 3093 5.556915 CATAAATAATCTACCCGCCTTCCA 58.443 41.667 0.00 0.00 0.00 3.53
3025 3099 5.144359 CAAACGCATAAATAATCTACCCGC 58.856 41.667 0.00 0.00 0.00 6.13
3028 3102 6.261381 TGTCCCAAACGCATAAATAATCTACC 59.739 38.462 0.00 0.00 0.00 3.18
3040 3125 0.179004 TGTCCTTGTCCCAAACGCAT 60.179 50.000 0.00 0.00 0.00 4.73
3043 3128 1.333619 CTTGTGTCCTTGTCCCAAACG 59.666 52.381 0.00 0.00 0.00 3.60
3084 3169 9.153721 GATAATGACCTGCATGAAAATTCAAAA 57.846 29.630 0.00 0.00 41.13 2.44
3085 3170 8.533657 AGATAATGACCTGCATGAAAATTCAAA 58.466 29.630 0.00 0.00 41.13 2.69
3086 3171 7.977293 CAGATAATGACCTGCATGAAAATTCAA 59.023 33.333 0.00 0.00 41.13 2.69
3100 3185 8.701908 ATATGCAACAATTCAGATAATGACCT 57.298 30.769 0.00 0.00 37.77 3.85
3102 3187 8.025445 GGGATATGCAACAATTCAGATAATGAC 58.975 37.037 0.00 0.00 37.77 3.06
3125 3210 5.105567 TCATAAAGGTATTCGCAAAGGGA 57.894 39.130 0.00 0.00 0.00 4.20
3144 3229 9.734984 TCAGACATATCAAGATTAATGCATCAT 57.265 29.630 0.00 0.00 0.00 2.45
3149 3234 7.430992 TGCTCAGACATATCAAGATTAATGC 57.569 36.000 0.00 0.00 0.00 3.56
3152 3237 8.677300 GGTTTTGCTCAGACATATCAAGATTAA 58.323 33.333 0.00 0.00 0.00 1.40
3160 3245 7.516198 AATATGGGTTTTGCTCAGACATATC 57.484 36.000 0.00 0.00 31.10 1.63
3166 3251 9.555727 GTAATAGTAATATGGGTTTTGCTCAGA 57.444 33.333 0.00 0.00 0.00 3.27
3185 3270 8.289939 TGCTTAGTACAGTTGCTAGTAATAGT 57.710 34.615 0.00 1.67 0.00 2.12
3193 3278 9.280174 AGTTTATTTTGCTTAGTACAGTTGCTA 57.720 29.630 0.00 0.00 0.00 3.49
3203 3288 7.419204 TGCGTTAACAGTTTATTTTGCTTAGT 58.581 30.769 6.39 0.00 0.00 2.24
3204 3289 7.845617 TGCGTTAACAGTTTATTTTGCTTAG 57.154 32.000 6.39 0.00 0.00 2.18
3205 3290 9.894783 TTATGCGTTAACAGTTTATTTTGCTTA 57.105 25.926 6.39 0.00 0.00 3.09
3206 3291 8.696175 GTTATGCGTTAACAGTTTATTTTGCTT 58.304 29.630 6.39 0.00 40.04 3.91
3207 3292 8.222984 GTTATGCGTTAACAGTTTATTTTGCT 57.777 30.769 6.39 0.00 40.04 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.