Multiple sequence alignment - TraesCS7D01G190600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G190600 chr7D 100.000 3590 0 0 1 3590 146089727 146093316 0.000000e+00 6630.0
1 TraesCS7D01G190600 chr7A 95.710 1958 66 9 841 2784 146908148 146910101 0.000000e+00 3134.0
2 TraesCS7D01G190600 chr7A 86.312 526 45 18 161 686 146907512 146908010 6.780000e-152 547.0
3 TraesCS7D01G190600 chr7A 91.197 284 23 2 2987 3268 146936796 146937079 5.620000e-103 385.0
4 TraesCS7D01G190600 chr7A 90.303 165 9 2 1 165 146900381 146900538 3.630000e-50 209.0
5 TraesCS7D01G190600 chr7A 88.119 101 10 2 3430 3528 146938431 146938531 6.300000e-23 119.0
6 TraesCS7D01G190600 chr7A 86.364 66 9 0 2802 2867 19260889 19260954 4.970000e-09 73.1
7 TraesCS7D01G190600 chr7A 84.722 72 11 0 2796 2867 128402797 128402868 4.970000e-09 73.1
8 TraesCS7D01G190600 chr7B 94.759 1927 76 15 833 2744 108248845 108250761 0.000000e+00 2976.0
9 TraesCS7D01G190600 chr7B 91.094 393 17 8 5 392 108247940 108248319 1.910000e-142 516.0
10 TraesCS7D01G190600 chr7B 87.919 298 22 4 391 686 108248427 108248712 4.440000e-89 339.0
11 TraesCS7D01G190600 chr7B 90.476 126 12 0 3450 3575 108272843 108272968 2.220000e-37 167.0
12 TraesCS7D01G190600 chr3B 86.992 1476 176 7 1012 2473 133384566 133386039 0.000000e+00 1648.0
13 TraesCS7D01G190600 chr3B 85.307 1613 198 25 1001 2594 132999447 133001039 0.000000e+00 1629.0
14 TraesCS7D01G190600 chr3B 87.500 72 9 0 2796 2867 690728499 690728428 2.300000e-12 84.2
15 TraesCS7D01G190600 chr3A 86.131 1543 185 20 1000 2523 100959905 100958373 0.000000e+00 1637.0
16 TraesCS7D01G190600 chr3A 86.730 1477 174 14 1012 2471 101569160 101567689 0.000000e+00 1622.0
17 TraesCS7D01G190600 chr3A 86.214 1516 179 19 1012 2510 101608029 101609531 0.000000e+00 1615.0
18 TraesCS7D01G190600 chr3A 83.705 1031 140 15 1001 2008 101102192 101101167 0.000000e+00 948.0
19 TraesCS7D01G190600 chr3A 85.021 474 69 2 2001 2473 101100255 101099783 6.970000e-132 481.0
20 TraesCS7D01G190600 chr3A 82.353 68 7 4 2801 2866 32645921 32645857 2.000000e-03 54.7
21 TraesCS7D01G190600 chr3D 86.585 1476 178 12 1012 2471 84884177 84885648 0.000000e+00 1611.0
22 TraesCS7D01G190600 chr6D 82.653 98 11 6 2796 2888 380820939 380820843 8.260000e-12 82.4
23 TraesCS7D01G190600 chr2D 83.333 72 12 0 2796 2867 20325550 20325621 2.310000e-07 67.6
24 TraesCS7D01G190600 chr2B 97.297 37 1 0 2795 2831 463366721 463366757 2.990000e-06 63.9
25 TraesCS7D01G190600 chr1A 78.351 97 16 5 2795 2888 577466320 577466414 1.390000e-04 58.4
26 TraesCS7D01G190600 chr5B 81.333 75 9 4 2796 2867 683500884 683500956 5.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G190600 chr7D 146089727 146093316 3589 False 6630.0 6630 100.000000 1 3590 1 chr7D.!!$F1 3589
1 TraesCS7D01G190600 chr7A 146907512 146910101 2589 False 1840.5 3134 91.011000 161 2784 2 chr7A.!!$F4 2623
2 TraesCS7D01G190600 chr7A 146936796 146938531 1735 False 252.0 385 89.658000 2987 3528 2 chr7A.!!$F5 541
3 TraesCS7D01G190600 chr7B 108247940 108250761 2821 False 1277.0 2976 91.257333 5 2744 3 chr7B.!!$F2 2739
4 TraesCS7D01G190600 chr3B 133384566 133386039 1473 False 1648.0 1648 86.992000 1012 2473 1 chr3B.!!$F2 1461
5 TraesCS7D01G190600 chr3B 132999447 133001039 1592 False 1629.0 1629 85.307000 1001 2594 1 chr3B.!!$F1 1593
6 TraesCS7D01G190600 chr3A 100958373 100959905 1532 True 1637.0 1637 86.131000 1000 2523 1 chr3A.!!$R2 1523
7 TraesCS7D01G190600 chr3A 101567689 101569160 1471 True 1622.0 1622 86.730000 1012 2471 1 chr3A.!!$R3 1459
8 TraesCS7D01G190600 chr3A 101608029 101609531 1502 False 1615.0 1615 86.214000 1012 2510 1 chr3A.!!$F1 1498
9 TraesCS7D01G190600 chr3A 101099783 101102192 2409 True 714.5 948 84.363000 1001 2473 2 chr3A.!!$R4 1472
10 TraesCS7D01G190600 chr3D 84884177 84885648 1471 False 1611.0 1611 86.585000 1012 2471 1 chr3D.!!$F1 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 992 0.042448 GTGACAACAAAGACGACCGC 60.042 55.000 0.0 0.0 0.0 5.68 F
1611 1793 1.004560 CGTGGAGAAGGAGCAGCAA 60.005 57.895 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2413 3520 1.690219 ATCATGTCCTCCAGGTCGGC 61.69 60.0 0.0 0.0 36.34 5.54 R
3152 4278 0.109597 CGTCTGTTCCCAAATGCAGC 60.11 55.0 0.0 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.606725 CTGGATCTCGTTTCAGATGCAC 59.393 50.000 2.49 0.00 43.94 4.57
128 129 1.407258 CACGAAACCACCAAACCACAT 59.593 47.619 0.00 0.00 0.00 3.21
131 132 2.030628 CGAAACCACCAAACCACATACC 60.031 50.000 0.00 0.00 0.00 2.73
142 143 3.974871 ACCACATACCGTCAAACAAAC 57.025 42.857 0.00 0.00 0.00 2.93
181 183 3.071479 CCGAGGACTAGATCACTAGAGC 58.929 54.545 10.60 3.35 46.34 4.09
291 297 0.927083 CGCCCGTACGATTACACGAG 60.927 60.000 18.76 0.00 40.56 4.18
295 301 1.463805 CGTACGATTACACGAGCCAG 58.536 55.000 10.44 0.00 40.56 4.85
328 334 1.064314 CCCGACCCCATTGATTGGTTA 60.064 52.381 0.00 0.00 44.83 2.85
403 518 1.646189 CGCTTCTAGAAACCAGCTCC 58.354 55.000 6.63 0.00 0.00 4.70
409 524 4.478206 TCTAGAAACCAGCTCCAATCTG 57.522 45.455 0.00 0.00 0.00 2.90
420 535 0.918983 TCCAATCTGGATCCCCACAC 59.081 55.000 9.90 0.00 42.67 3.82
422 537 0.106519 CAATCTGGATCCCCACACCC 60.107 60.000 9.90 0.00 37.58 4.61
423 538 0.552367 AATCTGGATCCCCACACCCA 60.552 55.000 9.90 0.00 37.58 4.51
425 540 2.121735 TGGATCCCCACACCCACA 60.122 61.111 9.90 0.00 37.58 4.17
426 541 2.202236 CTGGATCCCCACACCCACAG 62.202 65.000 9.90 0.00 37.58 3.66
427 542 2.231380 GGATCCCCACACCCACAGT 61.231 63.158 0.00 0.00 0.00 3.55
429 544 0.112412 GATCCCCACACCCACAGTTT 59.888 55.000 0.00 0.00 0.00 2.66
430 545 0.112412 ATCCCCACACCCACAGTTTC 59.888 55.000 0.00 0.00 0.00 2.78
431 546 1.896660 CCCCACACCCACAGTTTCG 60.897 63.158 0.00 0.00 0.00 3.46
432 547 1.153046 CCCACACCCACAGTTTCGT 60.153 57.895 0.00 0.00 0.00 3.85
433 548 1.444119 CCCACACCCACAGTTTCGTG 61.444 60.000 0.00 0.00 36.61 4.35
434 549 0.462937 CCACACCCACAGTTTCGTGA 60.463 55.000 0.00 0.00 39.34 4.35
435 550 0.655733 CACACCCACAGTTTCGTGAC 59.344 55.000 0.00 0.00 39.34 3.67
436 551 0.808453 ACACCCACAGTTTCGTGACG 60.808 55.000 0.00 0.00 39.34 4.35
487 602 2.181021 CTGCGTCCACGTAGGTCC 59.819 66.667 9.13 0.00 45.99 4.46
489 604 4.139234 GCGTCCACGTAGGTCCCC 62.139 72.222 0.36 0.00 42.22 4.81
509 624 4.796231 GCCCGCGACTCACACGAT 62.796 66.667 8.23 0.00 0.00 3.73
510 625 2.126071 CCCGCGACTCACACGATT 60.126 61.111 8.23 0.00 0.00 3.34
512 627 2.391821 CGCGACTCACACGATTGC 59.608 61.111 0.00 0.00 0.00 3.56
533 648 2.874780 GTAGCTCACGTGTCGCCG 60.875 66.667 22.37 7.72 0.00 6.46
557 672 1.887956 GCAACAGAAGATGGCCAGGAA 60.888 52.381 13.05 0.00 0.00 3.36
559 674 0.329596 ACAGAAGATGGCCAGGAACC 59.670 55.000 13.05 0.00 0.00 3.62
577 692 4.107051 GACGCATGTGTGGCCTGC 62.107 66.667 18.34 3.64 35.73 4.85
599 714 2.267961 GGTAACCCCACGCTCCTG 59.732 66.667 0.00 0.00 0.00 3.86
629 744 2.646175 GCCTAGCCACCACTCGACA 61.646 63.158 0.00 0.00 0.00 4.35
686 803 4.396357 TCTCAACTTCTCTCCTTCCTCT 57.604 45.455 0.00 0.00 0.00 3.69
687 804 5.522315 TCTCAACTTCTCTCCTTCCTCTA 57.478 43.478 0.00 0.00 0.00 2.43
688 805 5.258051 TCTCAACTTCTCTCCTTCCTCTAC 58.742 45.833 0.00 0.00 0.00 2.59
689 806 4.999310 TCAACTTCTCTCCTTCCTCTACA 58.001 43.478 0.00 0.00 0.00 2.74
690 807 5.013547 TCAACTTCTCTCCTTCCTCTACAG 58.986 45.833 0.00 0.00 0.00 2.74
691 808 4.668138 ACTTCTCTCCTTCCTCTACAGT 57.332 45.455 0.00 0.00 0.00 3.55
692 809 4.595986 ACTTCTCTCCTTCCTCTACAGTC 58.404 47.826 0.00 0.00 0.00 3.51
693 810 4.291249 ACTTCTCTCCTTCCTCTACAGTCT 59.709 45.833 0.00 0.00 0.00 3.24
694 811 5.489637 ACTTCTCTCCTTCCTCTACAGTCTA 59.510 44.000 0.00 0.00 0.00 2.59
695 812 5.362105 TCTCTCCTTCCTCTACAGTCTAC 57.638 47.826 0.00 0.00 0.00 2.59
696 813 4.783763 TCTCTCCTTCCTCTACAGTCTACA 59.216 45.833 0.00 0.00 0.00 2.74
697 814 4.846040 TCTCCTTCCTCTACAGTCTACAC 58.154 47.826 0.00 0.00 0.00 2.90
698 815 4.288887 TCTCCTTCCTCTACAGTCTACACA 59.711 45.833 0.00 0.00 0.00 3.72
699 816 4.333690 TCCTTCCTCTACAGTCTACACAC 58.666 47.826 0.00 0.00 0.00 3.82
700 817 4.079970 CCTTCCTCTACAGTCTACACACA 58.920 47.826 0.00 0.00 0.00 3.72
701 818 4.082679 CCTTCCTCTACAGTCTACACACAC 60.083 50.000 0.00 0.00 0.00 3.82
702 819 4.094830 TCCTCTACAGTCTACACACACA 57.905 45.455 0.00 0.00 0.00 3.72
703 820 3.819337 TCCTCTACAGTCTACACACACAC 59.181 47.826 0.00 0.00 0.00 3.82
704 821 3.568430 CCTCTACAGTCTACACACACACA 59.432 47.826 0.00 0.00 0.00 3.72
705 822 4.537965 CTCTACAGTCTACACACACACAC 58.462 47.826 0.00 0.00 0.00 3.82
706 823 3.949113 TCTACAGTCTACACACACACACA 59.051 43.478 0.00 0.00 0.00 3.72
707 824 2.888594 ACAGTCTACACACACACACAC 58.111 47.619 0.00 0.00 0.00 3.82
708 825 2.232696 ACAGTCTACACACACACACACA 59.767 45.455 0.00 0.00 0.00 3.72
709 826 2.603110 CAGTCTACACACACACACACAC 59.397 50.000 0.00 0.00 0.00 3.82
712 829 0.906066 TACACACACACACACACCCT 59.094 50.000 0.00 0.00 0.00 4.34
717 834 0.461339 ACACACACACACCCTTCGAC 60.461 55.000 0.00 0.00 0.00 4.20
728 845 1.423845 CCTTCGACGGGCAATTTCG 59.576 57.895 0.00 0.00 0.00 3.46
735 852 0.608035 ACGGGCAATTTCGTCCATGT 60.608 50.000 0.00 0.00 34.20 3.21
736 853 0.179166 CGGGCAATTTCGTCCATGTG 60.179 55.000 0.00 0.00 0.00 3.21
738 855 0.243365 GGCAATTTCGTCCATGTGCA 59.757 50.000 3.50 0.00 33.66 4.57
739 856 1.339711 GCAATTTCGTCCATGTGCAC 58.660 50.000 10.75 10.75 32.29 4.57
752 869 3.381983 TGCACATCTCCGCCGTCT 61.382 61.111 0.00 0.00 0.00 4.18
766 883 2.733593 GTCTGTCACGTCACGCCC 60.734 66.667 0.00 0.00 0.00 6.13
767 884 4.337060 TCTGTCACGTCACGCCCG 62.337 66.667 0.00 0.00 0.00 6.13
768 885 4.337060 CTGTCACGTCACGCCCGA 62.337 66.667 0.00 0.00 0.00 5.14
790 937 2.456119 CGTCCTCAGCAACATCGGC 61.456 63.158 0.00 0.00 0.00 5.54
820 967 1.326245 CGCGTCACAAAAACTCACAGA 59.674 47.619 0.00 0.00 0.00 3.41
821 968 2.597505 CGCGTCACAAAAACTCACAGAG 60.598 50.000 0.00 0.00 35.52 3.35
822 969 2.851008 GCGTCACAAAAACTCACAGAGC 60.851 50.000 0.00 0.00 32.04 4.09
823 970 2.286418 CGTCACAAAAACTCACAGAGCC 60.286 50.000 0.00 0.00 32.04 4.70
824 971 1.939934 TCACAAAAACTCACAGAGCCG 59.060 47.619 0.00 0.00 32.04 5.52
825 972 1.002468 CACAAAAACTCACAGAGCCGG 60.002 52.381 0.00 0.00 32.04 6.13
826 973 0.593128 CAAAAACTCACAGAGCCGGG 59.407 55.000 2.18 0.00 32.04 5.73
827 974 0.182775 AAAAACTCACAGAGCCGGGT 59.817 50.000 5.45 5.45 32.04 5.28
828 975 0.535102 AAAACTCACAGAGCCGGGTG 60.535 55.000 12.94 6.55 36.36 4.61
829 976 1.407656 AAACTCACAGAGCCGGGTGA 61.408 55.000 12.94 11.28 41.44 4.02
830 977 2.100879 AACTCACAGAGCCGGGTGAC 62.101 60.000 12.94 0.00 39.00 3.67
831 978 2.523168 TCACAGAGCCGGGTGACA 60.523 61.111 12.94 0.00 39.00 3.58
832 979 2.099652 CTCACAGAGCCGGGTGACAA 62.100 60.000 12.94 0.00 39.00 3.18
833 980 1.961277 CACAGAGCCGGGTGACAAC 60.961 63.158 12.94 0.00 37.18 3.32
834 981 2.425592 CAGAGCCGGGTGACAACA 59.574 61.111 12.94 0.00 0.00 3.33
835 982 1.227823 CAGAGCCGGGTGACAACAA 60.228 57.895 12.94 0.00 0.00 2.83
845 992 0.042448 GTGACAACAAAGACGACCGC 60.042 55.000 0.00 0.00 0.00 5.68
869 1016 2.447443 CTAGGTGTCTCACAGCCACTA 58.553 52.381 2.28 0.00 46.99 2.74
887 1034 1.933853 CTAACCAGCTACGCCACAATC 59.066 52.381 0.00 0.00 0.00 2.67
900 1047 4.156008 ACGCCACAATCAACCTTCTTAATC 59.844 41.667 0.00 0.00 0.00 1.75
913 1061 1.098050 CTTAATCCCACAGCTGTGCC 58.902 55.000 36.38 0.00 44.34 5.01
942 1104 2.924290 GTTACCGCTATATAGCTGCTGC 59.076 50.000 27.71 7.62 46.85 5.25
965 1127 1.079543 GAGCAAGCGAGCCAGAGAA 60.080 57.895 0.00 0.00 34.23 2.87
968 1130 1.784062 CAAGCGAGCCAGAGAAACG 59.216 57.895 0.00 0.00 0.00 3.60
970 1132 3.491652 GCGAGCCAGAGAAACGCC 61.492 66.667 0.00 0.00 42.79 5.68
972 1134 2.048127 GAGCCAGAGAAACGCCGT 60.048 61.111 0.00 0.00 0.00 5.68
1458 1635 2.122167 CGCCTACTTCCTCCTCGCT 61.122 63.158 0.00 0.00 0.00 4.93
1610 1792 2.659016 CGTGGAGAAGGAGCAGCA 59.341 61.111 0.00 0.00 0.00 4.41
1611 1793 1.004560 CGTGGAGAAGGAGCAGCAA 60.005 57.895 0.00 0.00 0.00 3.91
1675 1857 4.847516 CGTTCCGCGGCATCGAGA 62.848 66.667 23.51 0.00 38.46 4.04
1830 2018 4.400109 GTCTCGTGGCTCGACGCA 62.400 66.667 7.67 0.00 44.01 5.24
2413 3520 4.107051 AAGGCGGGTCGTCGTACG 62.107 66.667 9.53 9.53 44.19 3.67
2511 3618 3.591254 GACGTCCCTGCTTTCCGCT 62.591 63.158 3.51 0.00 40.11 5.52
2606 3713 1.093496 TGAGCTGCATCTCGCCATTG 61.093 55.000 12.62 0.00 41.33 2.82
2675 3783 2.930040 CAACAGTCGATACCACCATGTC 59.070 50.000 0.00 0.00 0.00 3.06
2694 3810 3.197766 TGTCGAAGTAGCCAATTCATCCT 59.802 43.478 0.00 0.00 0.00 3.24
2750 3875 3.326747 AGTGTATCTTTGGCGTCACTTC 58.673 45.455 0.00 0.00 33.26 3.01
2761 3886 2.222819 GGCGTCACTTCACGAATCAATC 60.223 50.000 0.00 0.00 42.69 2.67
2787 3912 6.798427 TCCATATGGATAGTTCATAGGCTC 57.202 41.667 20.98 0.00 39.78 4.70
2788 3913 6.263754 TCCATATGGATAGTTCATAGGCTCA 58.736 40.000 20.98 0.00 39.78 4.26
2789 3914 6.382282 TCCATATGGATAGTTCATAGGCTCAG 59.618 42.308 20.98 0.00 39.78 3.35
2790 3915 4.550076 ATGGATAGTTCATAGGCTCAGC 57.450 45.455 0.00 0.00 0.00 4.26
2791 3916 3.581101 TGGATAGTTCATAGGCTCAGCT 58.419 45.455 0.00 0.00 0.00 4.24
2792 3917 3.576118 TGGATAGTTCATAGGCTCAGCTC 59.424 47.826 0.00 0.00 0.00 4.09
2793 3918 3.576118 GGATAGTTCATAGGCTCAGCTCA 59.424 47.826 0.00 0.00 0.00 4.26
2794 3919 4.039730 GGATAGTTCATAGGCTCAGCTCAA 59.960 45.833 0.00 0.00 0.00 3.02
2795 3920 5.279910 GGATAGTTCATAGGCTCAGCTCAAT 60.280 44.000 0.00 0.00 0.00 2.57
2796 3921 3.806380 AGTTCATAGGCTCAGCTCAATG 58.194 45.455 0.00 0.00 0.00 2.82
2797 3922 2.877168 GTTCATAGGCTCAGCTCAATGG 59.123 50.000 0.00 0.00 0.00 3.16
2798 3923 2.121948 TCATAGGCTCAGCTCAATGGT 58.878 47.619 0.00 0.00 0.00 3.55
2799 3924 2.507058 TCATAGGCTCAGCTCAATGGTT 59.493 45.455 0.00 0.00 0.00 3.67
2800 3925 3.054139 TCATAGGCTCAGCTCAATGGTTT 60.054 43.478 0.00 0.00 0.00 3.27
2801 3926 4.164030 TCATAGGCTCAGCTCAATGGTTTA 59.836 41.667 0.00 0.00 0.00 2.01
2802 3927 3.659183 AGGCTCAGCTCAATGGTTTAT 57.341 42.857 0.00 0.00 0.00 1.40
2803 3928 3.285484 AGGCTCAGCTCAATGGTTTATG 58.715 45.455 0.00 0.00 0.00 1.90
2804 3929 3.054139 AGGCTCAGCTCAATGGTTTATGA 60.054 43.478 0.00 0.00 0.00 2.15
2805 3930 3.696051 GGCTCAGCTCAATGGTTTATGAA 59.304 43.478 0.00 0.00 0.00 2.57
2806 3931 4.340381 GGCTCAGCTCAATGGTTTATGAAT 59.660 41.667 0.00 0.00 0.00 2.57
2807 3932 5.506982 GGCTCAGCTCAATGGTTTATGAATC 60.507 44.000 0.00 0.00 0.00 2.52
2808 3933 5.298777 GCTCAGCTCAATGGTTTATGAATCT 59.701 40.000 0.00 0.00 0.00 2.40
2809 3934 6.183360 GCTCAGCTCAATGGTTTATGAATCTT 60.183 38.462 0.00 0.00 0.00 2.40
2810 3935 7.092137 TCAGCTCAATGGTTTATGAATCTTG 57.908 36.000 0.00 0.00 0.00 3.02
2811 3936 6.885918 TCAGCTCAATGGTTTATGAATCTTGA 59.114 34.615 0.00 0.00 0.00 3.02
2812 3937 7.558807 TCAGCTCAATGGTTTATGAATCTTGAT 59.441 33.333 0.00 0.00 0.00 2.57
2813 3938 7.648112 CAGCTCAATGGTTTATGAATCTTGATG 59.352 37.037 0.00 0.00 0.00 3.07
2814 3939 7.341256 AGCTCAATGGTTTATGAATCTTGATGT 59.659 33.333 0.00 0.00 0.00 3.06
2815 3940 8.623903 GCTCAATGGTTTATGAATCTTGATGTA 58.376 33.333 0.00 0.00 0.00 2.29
2849 3974 7.956420 ATTTCTGTTAGTCGTTGTATTGTCA 57.044 32.000 0.00 0.00 0.00 3.58
2850 3975 7.956420 TTTCTGTTAGTCGTTGTATTGTCAT 57.044 32.000 0.00 0.00 0.00 3.06
2851 3976 9.647797 ATTTCTGTTAGTCGTTGTATTGTCATA 57.352 29.630 0.00 0.00 0.00 2.15
2852 3977 8.683550 TTCTGTTAGTCGTTGTATTGTCATAG 57.316 34.615 0.00 0.00 0.00 2.23
2853 3978 7.823665 TCTGTTAGTCGTTGTATTGTCATAGT 58.176 34.615 0.00 0.00 0.00 2.12
2854 3979 8.301720 TCTGTTAGTCGTTGTATTGTCATAGTT 58.698 33.333 0.00 0.00 0.00 2.24
2855 3980 9.563898 CTGTTAGTCGTTGTATTGTCATAGTTA 57.436 33.333 0.00 0.00 0.00 2.24
2856 3981 9.911138 TGTTAGTCGTTGTATTGTCATAGTTAA 57.089 29.630 0.00 0.00 0.00 2.01
2860 3985 9.871238 AGTCGTTGTATTGTCATAGTTAAAGAT 57.129 29.630 0.00 0.00 0.00 2.40
2861 3986 9.901724 GTCGTTGTATTGTCATAGTTAAAGATG 57.098 33.333 0.00 0.00 0.00 2.90
2862 3987 9.863845 TCGTTGTATTGTCATAGTTAAAGATGA 57.136 29.630 0.00 0.00 0.00 2.92
2882 4007 9.950496 AAGATGAATAGTCTAAAAGCTTTCTCA 57.050 29.630 13.10 6.02 0.00 3.27
2883 4008 9.950496 AGATGAATAGTCTAAAAGCTTTCTCAA 57.050 29.630 13.10 0.00 0.00 3.02
2907 4032 7.971183 AAAAAGAAGTCTCGATTCTTAAGCT 57.029 32.000 11.78 0.00 44.25 3.74
2909 4034 8.696410 AAAAGAAGTCTCGATTCTTAAGCTAG 57.304 34.615 11.78 0.00 44.25 3.42
2910 4035 7.633193 AAGAAGTCTCGATTCTTAAGCTAGA 57.367 36.000 10.10 0.00 43.44 2.43
2911 4036 7.817418 AGAAGTCTCGATTCTTAAGCTAGAT 57.183 36.000 0.00 0.00 33.16 1.98
2912 4037 7.648142 AGAAGTCTCGATTCTTAAGCTAGATG 58.352 38.462 0.00 0.00 33.16 2.90
2913 4038 7.500892 AGAAGTCTCGATTCTTAAGCTAGATGA 59.499 37.037 0.00 0.00 33.16 2.92
2914 4039 7.575414 AGTCTCGATTCTTAAGCTAGATGAA 57.425 36.000 0.00 0.00 0.00 2.57
2915 4040 7.422399 AGTCTCGATTCTTAAGCTAGATGAAC 58.578 38.462 0.00 0.00 0.00 3.18
2916 4041 6.358558 GTCTCGATTCTTAAGCTAGATGAACG 59.641 42.308 0.00 0.82 0.00 3.95
2917 4042 5.520632 TCGATTCTTAAGCTAGATGAACGG 58.479 41.667 0.00 0.00 0.00 4.44
2918 4043 5.298527 TCGATTCTTAAGCTAGATGAACGGA 59.701 40.000 0.00 0.00 0.00 4.69
2919 4044 6.016192 TCGATTCTTAAGCTAGATGAACGGAT 60.016 38.462 0.00 0.00 0.00 4.18
2920 4045 6.088749 CGATTCTTAAGCTAGATGAACGGATG 59.911 42.308 0.00 0.00 0.00 3.51
2921 4046 6.465439 TTCTTAAGCTAGATGAACGGATGA 57.535 37.500 0.00 0.00 0.00 2.92
2922 4047 6.656632 TCTTAAGCTAGATGAACGGATGAT 57.343 37.500 0.00 0.00 0.00 2.45
2923 4048 6.450545 TCTTAAGCTAGATGAACGGATGATG 58.549 40.000 0.00 0.00 0.00 3.07
2924 4049 4.679373 AAGCTAGATGAACGGATGATGT 57.321 40.909 0.00 0.00 0.00 3.06
2925 4050 4.250116 AGCTAGATGAACGGATGATGTC 57.750 45.455 0.00 0.00 0.00 3.06
2926 4051 3.638627 AGCTAGATGAACGGATGATGTCA 59.361 43.478 0.00 0.00 0.00 3.58
2927 4052 4.282957 AGCTAGATGAACGGATGATGTCAT 59.717 41.667 0.00 0.00 39.70 3.06
2928 4053 4.388165 GCTAGATGAACGGATGATGTCATG 59.612 45.833 0.00 0.00 36.57 3.07
2929 4054 3.136763 AGATGAACGGATGATGTCATGC 58.863 45.455 0.00 2.23 40.68 4.06
2930 4055 2.399916 TGAACGGATGATGTCATGCA 57.600 45.000 13.69 0.00 43.71 3.96
2931 4056 2.921821 TGAACGGATGATGTCATGCAT 58.078 42.857 13.69 0.00 43.71 3.96
2932 4057 2.614983 TGAACGGATGATGTCATGCATG 59.385 45.455 21.07 21.07 43.71 4.06
2933 4058 1.601166 ACGGATGATGTCATGCATGG 58.399 50.000 25.97 9.33 43.71 3.66
2934 4059 1.141455 ACGGATGATGTCATGCATGGA 59.859 47.619 25.97 13.72 43.71 3.41
2935 4060 1.534163 CGGATGATGTCATGCATGGAC 59.466 52.381 25.97 20.89 43.71 4.02
2936 4061 1.534163 GGATGATGTCATGCATGGACG 59.466 52.381 25.97 0.63 43.13 4.79
2937 4062 2.486918 GATGATGTCATGCATGGACGA 58.513 47.619 25.97 13.06 38.06 4.20
2938 4063 1.944032 TGATGTCATGCATGGACGAG 58.056 50.000 25.97 0.00 38.06 4.18
2939 4064 1.224075 GATGTCATGCATGGACGAGG 58.776 55.000 25.97 0.00 38.06 4.63
2940 4065 0.179037 ATGTCATGCATGGACGAGGG 60.179 55.000 25.97 0.00 38.10 4.30
2941 4066 1.524621 GTCATGCATGGACGAGGGG 60.525 63.158 25.97 0.00 0.00 4.79
2942 4067 1.688884 TCATGCATGGACGAGGGGA 60.689 57.895 25.97 0.55 0.00 4.81
2943 4068 1.056125 TCATGCATGGACGAGGGGAT 61.056 55.000 25.97 0.00 0.00 3.85
2944 4069 0.604780 CATGCATGGACGAGGGGATC 60.605 60.000 19.40 0.00 0.00 3.36
2945 4070 1.056125 ATGCATGGACGAGGGGATCA 61.056 55.000 0.00 0.00 0.00 2.92
2946 4071 1.227674 GCATGGACGAGGGGATCAC 60.228 63.158 0.00 0.00 0.00 3.06
2947 4072 1.971505 GCATGGACGAGGGGATCACA 61.972 60.000 0.00 0.00 0.00 3.58
2948 4073 0.179073 CATGGACGAGGGGATCACAC 60.179 60.000 0.00 0.00 0.00 3.82
2949 4074 0.325671 ATGGACGAGGGGATCACACT 60.326 55.000 0.00 0.00 0.00 3.55
2950 4075 1.257750 TGGACGAGGGGATCACACTG 61.258 60.000 0.00 0.00 0.00 3.66
2951 4076 1.517832 GACGAGGGGATCACACTGG 59.482 63.158 0.00 0.00 0.00 4.00
2952 4077 2.187946 CGAGGGGATCACACTGGC 59.812 66.667 0.00 0.00 0.00 4.85
2953 4078 2.362369 CGAGGGGATCACACTGGCT 61.362 63.158 0.00 0.00 0.00 4.75
2954 4079 1.043116 CGAGGGGATCACACTGGCTA 61.043 60.000 0.00 0.00 0.00 3.93
2955 4080 1.204146 GAGGGGATCACACTGGCTAA 58.796 55.000 0.00 0.00 0.00 3.09
2956 4081 1.139853 GAGGGGATCACACTGGCTAAG 59.860 57.143 0.00 0.00 0.00 2.18
2957 4082 0.464554 GGGGATCACACTGGCTAAGC 60.465 60.000 0.00 0.00 0.00 3.09
2958 4083 0.253044 GGGATCACACTGGCTAAGCA 59.747 55.000 0.00 0.00 0.00 3.91
2959 4084 1.340017 GGGATCACACTGGCTAAGCAA 60.340 52.381 0.00 0.00 0.00 3.91
2960 4085 1.740025 GGATCACACTGGCTAAGCAAC 59.260 52.381 0.00 0.00 0.00 4.17
2961 4086 1.394917 GATCACACTGGCTAAGCAACG 59.605 52.381 0.00 0.00 0.00 4.10
2962 4087 0.602638 TCACACTGGCTAAGCAACGG 60.603 55.000 0.00 0.00 0.00 4.44
2963 4088 1.966451 ACACTGGCTAAGCAACGGC 60.966 57.895 0.00 0.00 41.61 5.68
2973 4098 2.202349 GCAACGGCGCTCATTGTC 60.202 61.111 6.90 2.91 0.00 3.18
2974 4099 2.965147 GCAACGGCGCTCATTGTCA 61.965 57.895 6.90 0.00 0.00 3.58
2975 4100 1.573932 CAACGGCGCTCATTGTCAA 59.426 52.632 6.90 0.00 0.00 3.18
2976 4101 0.168788 CAACGGCGCTCATTGTCAAT 59.831 50.000 6.90 0.00 0.00 2.57
2977 4102 0.447801 AACGGCGCTCATTGTCAATC 59.552 50.000 6.90 0.00 0.00 2.67
2978 4103 0.673333 ACGGCGCTCATTGTCAATCA 60.673 50.000 6.90 0.00 0.00 2.57
2979 4104 0.659427 CGGCGCTCATTGTCAATCAT 59.341 50.000 7.64 0.00 0.00 2.45
2980 4105 1.866601 CGGCGCTCATTGTCAATCATA 59.133 47.619 7.64 0.00 0.00 2.15
2981 4106 2.096565 CGGCGCTCATTGTCAATCATAG 60.097 50.000 7.64 0.00 0.00 2.23
2982 4107 2.874701 GGCGCTCATTGTCAATCATAGT 59.125 45.455 7.64 0.00 0.00 2.12
2983 4108 3.303593 GGCGCTCATTGTCAATCATAGTG 60.304 47.826 7.64 2.31 0.00 2.74
2984 4109 3.557185 GCGCTCATTGTCAATCATAGTGA 59.443 43.478 0.00 1.93 0.00 3.41
2985 4110 4.034394 GCGCTCATTGTCAATCATAGTGAA 59.966 41.667 0.00 0.00 0.00 3.18
2990 4115 5.812127 TCATTGTCAATCATAGTGAAGTCGG 59.188 40.000 0.00 0.00 0.00 4.79
2995 4120 2.941453 TCATAGTGAAGTCGGACTGC 57.059 50.000 12.12 10.66 0.00 4.40
3047 4172 4.145052 AGGACAAGGAAACAAACAGATCC 58.855 43.478 0.00 0.00 0.00 3.36
3049 4174 2.884639 ACAAGGAAACAAACAGATCCCG 59.115 45.455 0.00 0.00 32.15 5.14
3086 4211 3.908103 AGTTGGGGAGTTTAGCTTCTGTA 59.092 43.478 0.00 0.00 0.00 2.74
3087 4212 4.020128 AGTTGGGGAGTTTAGCTTCTGTAG 60.020 45.833 0.00 0.00 0.00 2.74
3088 4213 3.786553 TGGGGAGTTTAGCTTCTGTAGA 58.213 45.455 0.00 0.00 0.00 2.59
3089 4214 4.362677 TGGGGAGTTTAGCTTCTGTAGAT 58.637 43.478 0.00 0.00 0.00 1.98
3091 4216 5.962031 TGGGGAGTTTAGCTTCTGTAGATTA 59.038 40.000 0.00 0.00 0.00 1.75
3092 4217 6.098409 TGGGGAGTTTAGCTTCTGTAGATTAG 59.902 42.308 0.00 0.00 0.00 1.73
3093 4218 5.986741 GGGAGTTTAGCTTCTGTAGATTAGC 59.013 44.000 0.00 0.00 0.00 3.09
3094 4219 6.407074 GGGAGTTTAGCTTCTGTAGATTAGCA 60.407 42.308 0.00 0.00 36.11 3.49
3095 4220 6.699642 GGAGTTTAGCTTCTGTAGATTAGCAG 59.300 42.308 0.00 0.00 36.11 4.24
3122 4248 4.642437 TGTGAATGTTGTTAGCCAAGTTCA 59.358 37.500 0.00 0.00 36.92 3.18
3138 4264 5.336770 CCAAGTTCAGTCTATCTAGCACACA 60.337 44.000 0.00 0.00 0.00 3.72
3141 4267 5.124776 AGTTCAGTCTATCTAGCACACAGAC 59.875 44.000 0.00 0.00 36.67 3.51
3142 4268 4.589908 TCAGTCTATCTAGCACACAGACA 58.410 43.478 0.00 0.00 38.45 3.41
3143 4269 4.637977 TCAGTCTATCTAGCACACAGACAG 59.362 45.833 0.00 0.00 38.45 3.51
3144 4270 3.380004 AGTCTATCTAGCACACAGACAGC 59.620 47.826 0.00 0.00 38.45 4.40
3145 4271 3.129462 GTCTATCTAGCACACAGACAGCA 59.871 47.826 0.00 0.00 36.48 4.41
3146 4272 2.669300 ATCTAGCACACAGACAGCAG 57.331 50.000 0.00 0.00 0.00 4.24
3147 4273 1.332195 TCTAGCACACAGACAGCAGT 58.668 50.000 0.00 0.00 0.00 4.40
3148 4274 1.270826 TCTAGCACACAGACAGCAGTC 59.729 52.381 0.05 0.05 45.31 3.51
3162 4289 1.888018 CAGTCTGGGCTGCATTTGG 59.112 57.895 0.50 0.00 0.00 3.28
3165 4292 0.899717 GTCTGGGCTGCATTTGGGAA 60.900 55.000 0.50 0.00 0.00 3.97
3180 4307 6.183360 GCATTTGGGAACAGACGATATTGTTA 60.183 38.462 0.00 0.00 44.54 2.41
3185 4312 7.557724 TGGGAACAGACGATATTGTTATGTTA 58.442 34.615 19.76 8.65 37.63 2.41
3268 4395 5.358298 AAGAAGATAAAAGTTGCGTCACC 57.642 39.130 0.00 0.00 0.00 4.02
3270 4397 3.418684 AGATAAAAGTTGCGTCACCCT 57.581 42.857 0.00 0.00 0.00 4.34
3271 4398 3.335579 AGATAAAAGTTGCGTCACCCTC 58.664 45.455 0.00 0.00 0.00 4.30
3272 4399 2.922740 TAAAAGTTGCGTCACCCTCT 57.077 45.000 0.00 0.00 0.00 3.69
3273 4400 1.594331 AAAAGTTGCGTCACCCTCTC 58.406 50.000 0.00 0.00 0.00 3.20
3274 4401 0.468226 AAAGTTGCGTCACCCTCTCA 59.532 50.000 0.00 0.00 0.00 3.27
3275 4402 0.687354 AAGTTGCGTCACCCTCTCAT 59.313 50.000 0.00 0.00 0.00 2.90
3276 4403 1.557099 AGTTGCGTCACCCTCTCATA 58.443 50.000 0.00 0.00 0.00 2.15
3277 4404 1.899814 AGTTGCGTCACCCTCTCATAA 59.100 47.619 0.00 0.00 0.00 1.90
3278 4405 2.301870 AGTTGCGTCACCCTCTCATAAA 59.698 45.455 0.00 0.00 0.00 1.40
3279 4406 2.380084 TGCGTCACCCTCTCATAAAC 57.620 50.000 0.00 0.00 0.00 2.01
3280 4407 1.621317 TGCGTCACCCTCTCATAAACA 59.379 47.619 0.00 0.00 0.00 2.83
3281 4408 2.271800 GCGTCACCCTCTCATAAACAG 58.728 52.381 0.00 0.00 0.00 3.16
3282 4409 2.893637 CGTCACCCTCTCATAAACAGG 58.106 52.381 0.00 0.00 0.00 4.00
3283 4410 2.233922 CGTCACCCTCTCATAAACAGGT 59.766 50.000 0.00 0.00 0.00 4.00
3284 4411 3.676324 CGTCACCCTCTCATAAACAGGTC 60.676 52.174 0.00 0.00 0.00 3.85
3285 4412 3.260884 GTCACCCTCTCATAAACAGGTCA 59.739 47.826 0.00 0.00 0.00 4.02
3286 4413 4.080863 GTCACCCTCTCATAAACAGGTCAT 60.081 45.833 0.00 0.00 0.00 3.06
3287 4414 4.080919 TCACCCTCTCATAAACAGGTCATG 60.081 45.833 0.00 0.00 0.00 3.07
3288 4415 3.846588 ACCCTCTCATAAACAGGTCATGT 59.153 43.478 0.00 0.00 46.97 3.21
3289 4416 4.080863 ACCCTCTCATAAACAGGTCATGTC 60.081 45.833 0.00 0.00 43.00 3.06
3290 4417 4.115516 CCTCTCATAAACAGGTCATGTCG 58.884 47.826 0.00 0.00 43.00 4.35
3291 4418 3.521560 TCTCATAAACAGGTCATGTCGC 58.478 45.455 0.00 0.00 43.00 5.19
3292 4419 2.609459 CTCATAAACAGGTCATGTCGCC 59.391 50.000 0.00 0.00 43.00 5.54
3293 4420 2.027653 TCATAAACAGGTCATGTCGCCA 60.028 45.455 0.00 0.00 43.00 5.69
3294 4421 1.803334 TAAACAGGTCATGTCGCCAC 58.197 50.000 0.00 0.00 43.00 5.01
3295 4422 1.227999 AAACAGGTCATGTCGCCACG 61.228 55.000 0.00 0.00 43.00 4.94
3296 4423 3.490759 CAGGTCATGTCGCCACGC 61.491 66.667 0.00 0.00 0.00 5.34
3297 4424 4.002506 AGGTCATGTCGCCACGCA 62.003 61.111 0.00 0.00 0.00 5.24
3298 4425 3.788766 GGTCATGTCGCCACGCAC 61.789 66.667 0.00 0.00 0.00 5.34
3299 4426 3.041351 GTCATGTCGCCACGCACA 61.041 61.111 0.00 0.00 0.00 4.57
3300 4427 2.280457 TCATGTCGCCACGCACAA 60.280 55.556 0.00 0.00 0.00 3.33
3301 4428 1.670730 TCATGTCGCCACGCACAAT 60.671 52.632 0.00 0.00 0.00 2.71
3302 4429 1.512522 CATGTCGCCACGCACAATG 60.513 57.895 0.00 0.00 0.00 2.82
3303 4430 1.670730 ATGTCGCCACGCACAATGA 60.671 52.632 0.00 0.00 0.00 2.57
3311 4438 1.872952 CCACGCACAATGAACTTGAGA 59.127 47.619 0.00 0.00 38.29 3.27
3315 4442 3.248602 ACGCACAATGAACTTGAGAAGAC 59.751 43.478 0.00 0.00 38.29 3.01
3331 4458 5.419155 TGAGAAGACGATCCAGATTACAAGT 59.581 40.000 0.00 0.00 0.00 3.16
3380 4536 3.631453 AGCCGAGCTTGATTGTTGA 57.369 47.368 1.22 0.00 33.89 3.18
3381 4537 1.446907 AGCCGAGCTTGATTGTTGAG 58.553 50.000 1.22 0.00 33.89 3.02
3382 4538 1.160137 GCCGAGCTTGATTGTTGAGT 58.840 50.000 1.22 0.00 0.00 3.41
3389 5762 4.489810 AGCTTGATTGTTGAGTCTCTACG 58.510 43.478 9.44 0.00 0.00 3.51
3393 5766 0.242825 TTGTTGAGTCTCTACGCGGG 59.757 55.000 12.47 2.47 0.00 6.13
3414 5788 4.023279 GGGCCAACCTTGCTTTTATTTTTG 60.023 41.667 4.39 0.00 35.85 2.44
3418 5792 6.016360 GCCAACCTTGCTTTTATTTTTGGATT 60.016 34.615 0.00 0.00 35.28 3.01
3423 5797 8.769891 ACCTTGCTTTTATTTTTGGATTAAACG 58.230 29.630 0.00 0.00 0.00 3.60
3424 5798 8.227119 CCTTGCTTTTATTTTTGGATTAAACGG 58.773 33.333 0.00 0.00 0.00 4.44
3425 5799 7.659652 TGCTTTTATTTTTGGATTAAACGGG 57.340 32.000 0.00 0.00 0.00 5.28
3426 5800 6.147985 TGCTTTTATTTTTGGATTAAACGGGC 59.852 34.615 0.00 0.00 0.00 6.13
3427 5801 6.402766 GCTTTTATTTTTGGATTAAACGGGCC 60.403 38.462 0.00 0.00 0.00 5.80
3428 5802 5.740290 TTATTTTTGGATTAAACGGGCCA 57.260 34.783 4.39 0.00 0.00 5.36
3429 5803 3.669251 TTTTTGGATTAAACGGGCCAG 57.331 42.857 4.39 1.85 0.00 4.85
3430 5804 0.892063 TTTGGATTAAACGGGCCAGC 59.108 50.000 4.39 0.00 0.00 4.85
3431 5805 0.039035 TTGGATTAAACGGGCCAGCT 59.961 50.000 4.39 0.00 0.00 4.24
3432 5806 0.039035 TGGATTAAACGGGCCAGCTT 59.961 50.000 4.39 0.00 0.00 3.74
3433 5807 1.182667 GGATTAAACGGGCCAGCTTT 58.817 50.000 4.39 6.87 0.00 3.51
3434 5808 1.548719 GGATTAAACGGGCCAGCTTTT 59.451 47.619 4.39 0.29 0.00 2.27
3435 5809 2.028476 GGATTAAACGGGCCAGCTTTTT 60.028 45.455 4.39 0.00 0.00 1.94
3478 5852 4.702131 GCCTTGCTAATCCTACATTATGGG 59.298 45.833 0.00 0.00 0.00 4.00
3481 5855 3.270877 GCTAATCCTACATTATGGGCCG 58.729 50.000 0.00 0.00 0.00 6.13
3498 5872 2.010043 GCCGGACCGAGCTATTTTTCA 61.010 52.381 17.49 0.00 0.00 2.69
3500 5874 1.327764 CGGACCGAGCTATTTTTCAGC 59.672 52.381 8.64 0.00 39.41 4.26
3516 5890 3.454719 TCAGCAAGAAAATGGATCCCA 57.545 42.857 9.90 0.00 38.19 4.37
3528 5902 1.123077 GGATCCCAGCCCAAATTTCC 58.877 55.000 0.00 0.00 0.00 3.13
3529 5903 1.343377 GGATCCCAGCCCAAATTTCCT 60.343 52.381 0.00 0.00 0.00 3.36
3530 5904 2.470990 GATCCCAGCCCAAATTTCCTT 58.529 47.619 0.00 0.00 0.00 3.36
3531 5905 2.414250 TCCCAGCCCAAATTTCCTTT 57.586 45.000 0.00 0.00 0.00 3.11
3532 5906 2.700354 TCCCAGCCCAAATTTCCTTTT 58.300 42.857 0.00 0.00 0.00 2.27
3533 5907 2.371510 TCCCAGCCCAAATTTCCTTTTG 59.628 45.455 0.00 0.00 36.55 2.44
3540 5914 3.490439 CAAATTTCCTTTTGGGGTGCT 57.510 42.857 0.00 0.00 40.87 4.40
3541 5915 3.402110 CAAATTTCCTTTTGGGGTGCTC 58.598 45.455 0.00 0.00 40.87 4.26
3542 5916 2.397044 ATTTCCTTTTGGGGTGCTCA 57.603 45.000 0.00 0.00 40.87 4.26
3543 5917 2.397044 TTTCCTTTTGGGGTGCTCAT 57.603 45.000 0.00 0.00 40.87 2.90
3544 5918 1.923356 TTCCTTTTGGGGTGCTCATC 58.077 50.000 0.00 0.00 40.87 2.92
3545 5919 0.776810 TCCTTTTGGGGTGCTCATCA 59.223 50.000 0.00 0.00 40.87 3.07
3546 5920 1.146774 TCCTTTTGGGGTGCTCATCAA 59.853 47.619 0.00 0.00 40.87 2.57
3547 5921 1.547372 CCTTTTGGGGTGCTCATCAAG 59.453 52.381 0.00 0.00 35.46 3.02
3548 5922 1.547372 CTTTTGGGGTGCTCATCAAGG 59.453 52.381 0.00 0.00 0.00 3.61
3549 5923 0.899717 TTTGGGGTGCTCATCAAGGC 60.900 55.000 0.00 0.00 0.00 4.35
3550 5924 1.792757 TTGGGGTGCTCATCAAGGCT 61.793 55.000 0.00 0.00 0.00 4.58
3551 5925 1.000396 GGGGTGCTCATCAAGGCTT 60.000 57.895 0.00 0.00 0.00 4.35
3552 5926 1.318158 GGGGTGCTCATCAAGGCTTG 61.318 60.000 21.17 21.17 0.00 4.01
3553 5927 0.322816 GGGTGCTCATCAAGGCTTGA 60.323 55.000 30.29 30.29 45.01 3.02
3561 5935 1.304282 TCAAGGCTTGATCCTGGCC 59.696 57.895 25.38 11.27 45.57 5.36
3562 5936 1.755783 CAAGGCTTGATCCTGGCCC 60.756 63.158 22.64 0.00 46.31 5.80
3563 5937 2.240918 AAGGCTTGATCCTGGCCCA 61.241 57.895 14.40 0.00 46.31 5.36
3564 5938 1.803453 AAGGCTTGATCCTGGCCCAA 61.803 55.000 14.40 0.00 46.31 4.12
3565 5939 1.305213 GGCTTGATCCTGGCCCAAA 60.305 57.895 0.00 0.00 39.96 3.28
3566 5940 1.325476 GGCTTGATCCTGGCCCAAAG 61.325 60.000 0.00 0.00 39.96 2.77
3567 5941 0.613012 GCTTGATCCTGGCCCAAAGT 60.613 55.000 0.00 0.00 0.00 2.66
3568 5942 1.340991 GCTTGATCCTGGCCCAAAGTA 60.341 52.381 0.00 0.00 0.00 2.24
3569 5943 2.369394 CTTGATCCTGGCCCAAAGTAC 58.631 52.381 0.00 0.00 0.00 2.73
3570 5944 1.367346 TGATCCTGGCCCAAAGTACA 58.633 50.000 0.00 0.00 0.00 2.90
3571 5945 1.707989 TGATCCTGGCCCAAAGTACAA 59.292 47.619 0.00 0.00 0.00 2.41
3572 5946 2.290896 TGATCCTGGCCCAAAGTACAAG 60.291 50.000 0.00 0.00 0.00 3.16
3573 5947 0.251165 TCCTGGCCCAAAGTACAAGC 60.251 55.000 0.00 0.00 0.00 4.01
3574 5948 1.250840 CCTGGCCCAAAGTACAAGCC 61.251 60.000 0.00 0.02 44.13 4.35
3575 5949 4.511838 GGCCCAAAGTACAAGCCA 57.488 55.556 0.00 0.00 43.32 4.75
3576 5950 2.740121 GGCCCAAAGTACAAGCCAA 58.260 52.632 0.00 0.00 43.32 4.52
3577 5951 1.044611 GGCCCAAAGTACAAGCCAAA 58.955 50.000 0.00 0.00 43.32 3.28
3578 5952 1.270094 GGCCCAAAGTACAAGCCAAAC 60.270 52.381 0.00 0.00 43.32 2.93
3579 5953 1.686587 GCCCAAAGTACAAGCCAAACT 59.313 47.619 0.00 0.00 0.00 2.66
3580 5954 2.288213 GCCCAAAGTACAAGCCAAACTC 60.288 50.000 0.00 0.00 0.00 3.01
3581 5955 2.031157 CCCAAAGTACAAGCCAAACTCG 60.031 50.000 0.00 0.00 0.00 4.18
3582 5956 2.875933 CCAAAGTACAAGCCAAACTCGA 59.124 45.455 0.00 0.00 0.00 4.04
3583 5957 3.502211 CCAAAGTACAAGCCAAACTCGAT 59.498 43.478 0.00 0.00 0.00 3.59
3584 5958 4.378459 CCAAAGTACAAGCCAAACTCGATC 60.378 45.833 0.00 0.00 0.00 3.69
3585 5959 3.963428 AGTACAAGCCAAACTCGATCT 57.037 42.857 0.00 0.00 0.00 2.75
3586 5960 3.589988 AGTACAAGCCAAACTCGATCTG 58.410 45.455 0.00 0.00 0.00 2.90
3587 5961 2.839486 ACAAGCCAAACTCGATCTGA 57.161 45.000 0.00 0.00 0.00 3.27
3588 5962 3.340814 ACAAGCCAAACTCGATCTGAT 57.659 42.857 0.00 0.00 0.00 2.90
3589 5963 3.265791 ACAAGCCAAACTCGATCTGATC 58.734 45.455 7.60 7.60 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.497273 TGCATCTGAAACGAGATCCAGA 59.503 45.455 0.00 0.00 39.60 3.86
1 2 2.606725 GTGCATCTGAAACGAGATCCAG 59.393 50.000 0.00 0.00 29.72 3.86
2 3 2.028203 TGTGCATCTGAAACGAGATCCA 60.028 45.455 0.00 0.00 29.72 3.41
3 4 2.621338 TGTGCATCTGAAACGAGATCC 58.379 47.619 0.00 0.00 29.72 3.36
10 11 2.331194 GTGCCATTGTGCATCTGAAAC 58.669 47.619 0.00 0.00 44.30 2.78
64 65 1.165907 ATATGCACATTCCCGCACGG 61.166 55.000 1.02 1.02 41.79 4.94
65 66 0.235665 GATATGCACATTCCCGCACG 59.764 55.000 0.00 0.00 41.79 5.34
66 67 1.532868 GAGATATGCACATTCCCGCAC 59.467 52.381 0.00 0.00 41.79 5.34
67 68 1.873486 CGAGATATGCACATTCCCGCA 60.873 52.381 0.00 0.00 43.45 5.69
68 69 0.792640 CGAGATATGCACATTCCCGC 59.207 55.000 0.00 0.00 0.00 6.13
69 70 0.792640 GCGAGATATGCACATTCCCG 59.207 55.000 0.00 0.00 0.00 5.14
128 129 2.747989 TGTTGCTGTTTGTTTGACGGTA 59.252 40.909 0.00 0.00 0.00 4.02
131 132 4.325741 TGATTTGTTGCTGTTTGTTTGACG 59.674 37.500 0.00 0.00 0.00 4.35
142 143 1.602668 CGGGTTGGTGATTTGTTGCTG 60.603 52.381 0.00 0.00 0.00 4.41
181 183 1.098050 CTTTTGCGAATGGAGGGAGG 58.902 55.000 0.00 0.00 0.00 4.30
355 361 2.809601 GGTGACGTGTGCGCCTAG 60.810 66.667 4.18 0.00 42.83 3.02
403 518 0.106519 GGGTGTGGGGATCCAGATTG 60.107 60.000 15.23 0.00 45.05 2.67
409 524 1.789576 AACTGTGGGTGTGGGGATCC 61.790 60.000 1.92 1.92 0.00 3.36
420 535 1.068417 TCCGTCACGAAACTGTGGG 59.932 57.895 0.00 0.00 40.31 4.61
422 537 1.545614 CGGTCCGTCACGAAACTGTG 61.546 60.000 0.00 0.00 41.28 3.66
423 538 1.299620 CGGTCCGTCACGAAACTGT 60.300 57.895 0.00 0.00 0.00 3.55
425 540 1.008079 GTCGGTCCGTCACGAAACT 60.008 57.895 11.88 0.00 41.17 2.66
426 541 2.359791 CGTCGGTCCGTCACGAAAC 61.360 63.158 17.94 3.55 41.17 2.78
427 542 2.051076 CGTCGGTCCGTCACGAAA 60.051 61.111 17.94 0.00 41.17 3.46
512 627 1.226046 CGACACGTGAGCTACCGAG 60.226 63.158 25.01 6.03 0.00 4.63
517 632 3.359523 ACGGCGACACGTGAGCTA 61.360 61.111 28.71 0.00 46.64 3.32
533 648 1.154150 GCCATCTTCTGTTGCGCAC 60.154 57.895 11.12 6.28 0.00 5.34
559 674 3.792047 CAGGCCACACATGCGTCG 61.792 66.667 5.01 0.00 0.00 5.12
577 692 2.506881 GCGTGGGGTTACCGTACG 60.507 66.667 19.65 19.65 45.23 3.67
599 714 1.008309 GCTAGGCGAGGACGTGATC 60.008 63.158 0.00 0.00 41.98 2.92
629 744 2.564721 GCGCCAAGCCAAAGGAAGT 61.565 57.895 0.00 0.00 40.81 3.01
686 803 3.444388 TGTGTGTGTGTGTGTAGACTGTA 59.556 43.478 0.00 0.00 0.00 2.74
687 804 2.232696 TGTGTGTGTGTGTGTAGACTGT 59.767 45.455 0.00 0.00 0.00 3.55
688 805 2.603110 GTGTGTGTGTGTGTGTAGACTG 59.397 50.000 0.00 0.00 0.00 3.51
689 806 2.418197 GGTGTGTGTGTGTGTGTAGACT 60.418 50.000 0.00 0.00 0.00 3.24
690 807 1.931172 GGTGTGTGTGTGTGTGTAGAC 59.069 52.381 0.00 0.00 0.00 2.59
691 808 1.134640 GGGTGTGTGTGTGTGTGTAGA 60.135 52.381 0.00 0.00 0.00 2.59
692 809 1.134521 AGGGTGTGTGTGTGTGTGTAG 60.135 52.381 0.00 0.00 0.00 2.74
693 810 0.906066 AGGGTGTGTGTGTGTGTGTA 59.094 50.000 0.00 0.00 0.00 2.90
694 811 0.037590 AAGGGTGTGTGTGTGTGTGT 59.962 50.000 0.00 0.00 0.00 3.72
695 812 0.732571 GAAGGGTGTGTGTGTGTGTG 59.267 55.000 0.00 0.00 0.00 3.82
696 813 0.742990 CGAAGGGTGTGTGTGTGTGT 60.743 55.000 0.00 0.00 0.00 3.72
697 814 0.461163 TCGAAGGGTGTGTGTGTGTG 60.461 55.000 0.00 0.00 0.00 3.82
698 815 0.461339 GTCGAAGGGTGTGTGTGTGT 60.461 55.000 0.00 0.00 0.00 3.72
699 816 1.487452 CGTCGAAGGGTGTGTGTGTG 61.487 60.000 0.00 0.00 0.00 3.82
700 817 1.227147 CGTCGAAGGGTGTGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
701 818 1.954146 CCGTCGAAGGGTGTGTGTG 60.954 63.158 9.83 0.00 0.00 3.82
702 819 2.420043 CCGTCGAAGGGTGTGTGT 59.580 61.111 9.83 0.00 0.00 3.72
703 820 2.357034 CCCGTCGAAGGGTGTGTG 60.357 66.667 26.55 1.44 46.38 3.82
712 829 2.155665 GACGAAATTGCCCGTCGAA 58.844 52.632 10.93 0.00 44.23 3.71
717 834 0.179166 CACATGGACGAAATTGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
720 837 1.335780 TGTGCACATGGACGAAATTGC 60.336 47.619 17.42 0.00 39.39 3.56
728 845 1.709147 GCGGAGATGTGCACATGGAC 61.709 60.000 35.92 23.58 36.57 4.02
735 852 3.381983 AGACGGCGGAGATGTGCA 61.382 61.111 13.24 0.00 0.00 4.57
736 853 2.887568 CAGACGGCGGAGATGTGC 60.888 66.667 13.24 0.00 0.00 4.57
738 855 1.977009 TGACAGACGGCGGAGATGT 60.977 57.895 13.24 10.09 0.00 3.06
739 856 1.517257 GTGACAGACGGCGGAGATG 60.517 63.158 13.24 6.60 0.00 2.90
752 869 4.634133 GTCGGGCGTGACGTGACA 62.634 66.667 17.47 0.00 0.00 3.58
764 881 4.477975 GCTGAGGACGTCGTCGGG 62.478 72.222 35.39 27.30 41.85 5.14
766 883 2.081212 GTTGCTGAGGACGTCGTCG 61.081 63.158 27.52 22.81 43.34 5.12
767 884 0.388649 ATGTTGCTGAGGACGTCGTC 60.389 55.000 27.00 27.00 0.00 4.20
768 885 0.388649 GATGTTGCTGAGGACGTCGT 60.389 55.000 11.12 11.12 0.00 4.34
772 891 2.456119 GCCGATGTTGCTGAGGACG 61.456 63.158 0.00 0.00 0.00 4.79
820 967 0.818040 GTCTTTGTTGTCACCCGGCT 60.818 55.000 0.00 0.00 0.00 5.52
821 968 1.652563 GTCTTTGTTGTCACCCGGC 59.347 57.895 0.00 0.00 0.00 6.13
822 969 0.531090 TCGTCTTTGTTGTCACCCGG 60.531 55.000 0.00 0.00 0.00 5.73
823 970 0.580104 GTCGTCTTTGTTGTCACCCG 59.420 55.000 0.00 0.00 0.00 5.28
824 971 0.942252 GGTCGTCTTTGTTGTCACCC 59.058 55.000 0.00 0.00 0.00 4.61
825 972 0.580104 CGGTCGTCTTTGTTGTCACC 59.420 55.000 0.00 0.00 0.00 4.02
826 973 0.042448 GCGGTCGTCTTTGTTGTCAC 60.042 55.000 0.00 0.00 0.00 3.67
827 974 1.484227 CGCGGTCGTCTTTGTTGTCA 61.484 55.000 0.00 0.00 0.00 3.58
828 975 1.200839 CGCGGTCGTCTTTGTTGTC 59.799 57.895 0.00 0.00 0.00 3.18
829 976 3.315796 CGCGGTCGTCTTTGTTGT 58.684 55.556 0.00 0.00 0.00 3.32
845 992 0.171455 GCTGTGAGACACCTAGGACG 59.829 60.000 17.98 8.68 32.73 4.79
887 1034 3.441572 CAGCTGTGGGATTAAGAAGGTTG 59.558 47.826 5.25 0.00 0.00 3.77
959 1121 0.734253 CTCCTCACGGCGTTTCTCTG 60.734 60.000 11.19 0.00 0.00 3.35
961 1123 2.095252 GCTCCTCACGGCGTTTCTC 61.095 63.158 11.19 0.00 0.00 2.87
972 1134 1.979155 CCTCTCCGTGTGCTCCTCA 60.979 63.158 0.00 0.00 0.00 3.86
976 1138 2.219325 CTGACCCTCTCCGTGTGCTC 62.219 65.000 0.00 0.00 0.00 4.26
981 1143 2.888863 GCTCTGACCCTCTCCGTG 59.111 66.667 0.00 0.00 0.00 4.94
982 1144 2.559922 ATCGCTCTGACCCTCTCCGT 62.560 60.000 0.00 0.00 0.00 4.69
983 1145 1.826054 ATCGCTCTGACCCTCTCCG 60.826 63.158 0.00 0.00 0.00 4.63
1272 1449 2.354805 GGCCTGGAAGAACTTGACGTAT 60.355 50.000 0.00 0.00 34.07 3.06
1458 1635 2.043551 TTGGCCAGGTTGTGCACA 60.044 55.556 17.42 17.42 0.00 4.57
2413 3520 1.690219 ATCATGTCCTCCAGGTCGGC 61.690 60.000 0.00 0.00 36.34 5.54
2675 3783 3.941483 ACAAGGATGAATTGGCTACTTCG 59.059 43.478 0.00 0.00 31.76 3.79
2750 3875 6.806388 TCCATATGGATTGATTGATTCGTG 57.194 37.500 20.98 0.00 39.78 4.35
2780 3905 3.659183 AAACCATTGAGCTGAGCCTAT 57.341 42.857 0.00 0.00 0.00 2.57
2781 3906 4.164030 TCATAAACCATTGAGCTGAGCCTA 59.836 41.667 0.00 0.00 0.00 3.93
2782 3907 3.054139 TCATAAACCATTGAGCTGAGCCT 60.054 43.478 0.00 0.00 0.00 4.58
2783 3908 3.282021 TCATAAACCATTGAGCTGAGCC 58.718 45.455 0.00 0.00 0.00 4.70
2784 3909 4.970662 TTCATAAACCATTGAGCTGAGC 57.029 40.909 0.00 0.00 0.00 4.26
2785 3910 6.939132 AGATTCATAAACCATTGAGCTGAG 57.061 37.500 0.00 0.00 0.00 3.35
2786 3911 6.885918 TCAAGATTCATAAACCATTGAGCTGA 59.114 34.615 0.00 0.00 0.00 4.26
2787 3912 7.092137 TCAAGATTCATAAACCATTGAGCTG 57.908 36.000 0.00 0.00 0.00 4.24
2788 3913 7.341256 ACATCAAGATTCATAAACCATTGAGCT 59.659 33.333 0.00 0.00 0.00 4.09
2789 3914 7.486647 ACATCAAGATTCATAAACCATTGAGC 58.513 34.615 0.00 0.00 0.00 4.26
2823 3948 9.478768 TGACAATACAACGACTAACAGAAATAA 57.521 29.630 0.00 0.00 0.00 1.40
2824 3949 9.647797 ATGACAATACAACGACTAACAGAAATA 57.352 29.630 0.00 0.00 0.00 1.40
2825 3950 7.956420 TGACAATACAACGACTAACAGAAAT 57.044 32.000 0.00 0.00 0.00 2.17
2826 3951 7.956420 ATGACAATACAACGACTAACAGAAA 57.044 32.000 0.00 0.00 0.00 2.52
2827 3952 8.301720 ACTATGACAATACAACGACTAACAGAA 58.698 33.333 0.00 0.00 0.00 3.02
2828 3953 7.823665 ACTATGACAATACAACGACTAACAGA 58.176 34.615 0.00 0.00 0.00 3.41
2829 3954 8.462143 AACTATGACAATACAACGACTAACAG 57.538 34.615 0.00 0.00 0.00 3.16
2830 3955 9.911138 TTAACTATGACAATACAACGACTAACA 57.089 29.630 0.00 0.00 0.00 2.41
2834 3959 9.871238 ATCTTTAACTATGACAATACAACGACT 57.129 29.630 0.00 0.00 0.00 4.18
2835 3960 9.901724 CATCTTTAACTATGACAATACAACGAC 57.098 33.333 0.00 0.00 0.00 4.34
2836 3961 9.863845 TCATCTTTAACTATGACAATACAACGA 57.136 29.630 0.00 0.00 0.00 3.85
2856 3981 9.950496 TGAGAAAGCTTTTAGACTATTCATCTT 57.050 29.630 14.05 0.00 0.00 2.40
2857 3982 9.950496 TTGAGAAAGCTTTTAGACTATTCATCT 57.050 29.630 14.05 0.29 0.00 2.90
2883 4008 7.971183 AGCTTAAGAATCGAGACTTCTTTTT 57.029 32.000 15.57 0.00 41.78 1.94
2884 4009 8.524487 TCTAGCTTAAGAATCGAGACTTCTTTT 58.476 33.333 15.57 5.16 41.78 2.27
2885 4010 8.057536 TCTAGCTTAAGAATCGAGACTTCTTT 57.942 34.615 15.57 3.39 41.78 2.52
2886 4011 7.633193 TCTAGCTTAAGAATCGAGACTTCTT 57.367 36.000 14.92 14.92 43.49 2.52
2887 4012 7.500892 TCATCTAGCTTAAGAATCGAGACTTCT 59.499 37.037 6.67 2.41 34.46 2.85
2888 4013 7.644490 TCATCTAGCTTAAGAATCGAGACTTC 58.356 38.462 6.67 0.07 0.00 3.01
2889 4014 7.575414 TCATCTAGCTTAAGAATCGAGACTT 57.425 36.000 6.67 10.78 0.00 3.01
2890 4015 7.422399 GTTCATCTAGCTTAAGAATCGAGACT 58.578 38.462 6.67 0.00 0.00 3.24
2891 4016 6.358558 CGTTCATCTAGCTTAAGAATCGAGAC 59.641 42.308 6.67 0.00 0.00 3.36
2892 4017 6.431278 CGTTCATCTAGCTTAAGAATCGAGA 58.569 40.000 6.67 0.36 0.00 4.04
2893 4018 5.627367 CCGTTCATCTAGCTTAAGAATCGAG 59.373 44.000 6.67 0.00 0.00 4.04
2894 4019 5.298527 TCCGTTCATCTAGCTTAAGAATCGA 59.701 40.000 6.67 0.00 0.00 3.59
2895 4020 5.520632 TCCGTTCATCTAGCTTAAGAATCG 58.479 41.667 6.67 0.00 0.00 3.34
2896 4021 7.148641 TCATCCGTTCATCTAGCTTAAGAATC 58.851 38.462 6.67 0.00 0.00 2.52
2897 4022 7.055667 TCATCCGTTCATCTAGCTTAAGAAT 57.944 36.000 6.67 0.00 0.00 2.40
2898 4023 6.465439 TCATCCGTTCATCTAGCTTAAGAA 57.535 37.500 6.67 0.00 0.00 2.52
2899 4024 6.040955 ACATCATCCGTTCATCTAGCTTAAGA 59.959 38.462 6.67 0.00 0.00 2.10
2900 4025 6.219473 ACATCATCCGTTCATCTAGCTTAAG 58.781 40.000 0.00 0.00 0.00 1.85
2901 4026 6.161855 ACATCATCCGTTCATCTAGCTTAA 57.838 37.500 0.00 0.00 0.00 1.85
2902 4027 5.301805 TGACATCATCCGTTCATCTAGCTTA 59.698 40.000 0.00 0.00 0.00 3.09
2903 4028 4.100035 TGACATCATCCGTTCATCTAGCTT 59.900 41.667 0.00 0.00 0.00 3.74
2904 4029 3.638627 TGACATCATCCGTTCATCTAGCT 59.361 43.478 0.00 0.00 0.00 3.32
2905 4030 3.982475 TGACATCATCCGTTCATCTAGC 58.018 45.455 0.00 0.00 0.00 3.42
2906 4031 4.388165 GCATGACATCATCCGTTCATCTAG 59.612 45.833 0.00 0.00 33.61 2.43
2907 4032 4.202243 TGCATGACATCATCCGTTCATCTA 60.202 41.667 0.00 0.00 33.61 1.98
2908 4033 3.136763 GCATGACATCATCCGTTCATCT 58.863 45.455 0.00 0.00 33.61 2.90
2909 4034 2.874086 TGCATGACATCATCCGTTCATC 59.126 45.455 0.00 0.00 33.61 2.92
2910 4035 2.921821 TGCATGACATCATCCGTTCAT 58.078 42.857 0.00 0.00 33.61 2.57
2911 4036 2.399916 TGCATGACATCATCCGTTCA 57.600 45.000 0.00 0.00 33.61 3.18
2912 4037 2.031420 CCATGCATGACATCATCCGTTC 60.031 50.000 28.31 0.00 36.64 3.95
2913 4038 1.951602 CCATGCATGACATCATCCGTT 59.048 47.619 28.31 0.00 36.64 4.44
2914 4039 1.141455 TCCATGCATGACATCATCCGT 59.859 47.619 28.31 0.00 36.64 4.69
2915 4040 1.534163 GTCCATGCATGACATCATCCG 59.466 52.381 28.31 7.82 36.64 4.18
2916 4041 1.534163 CGTCCATGCATGACATCATCC 59.466 52.381 28.31 5.25 36.64 3.51
2917 4042 2.479275 CTCGTCCATGCATGACATCATC 59.521 50.000 28.31 8.52 36.64 2.92
2918 4043 2.490991 CTCGTCCATGCATGACATCAT 58.509 47.619 28.31 0.00 36.64 2.45
2919 4044 1.473788 CCTCGTCCATGCATGACATCA 60.474 52.381 28.31 6.69 36.64 3.07
2920 4045 1.224075 CCTCGTCCATGCATGACATC 58.776 55.000 28.31 13.02 36.64 3.06
2921 4046 0.179037 CCCTCGTCCATGCATGACAT 60.179 55.000 28.31 0.00 40.66 3.06
2922 4047 1.221566 CCCTCGTCCATGCATGACA 59.778 57.895 28.31 11.17 0.00 3.58
2923 4048 1.524621 CCCCTCGTCCATGCATGAC 60.525 63.158 28.31 20.56 0.00 3.06
2924 4049 1.056125 ATCCCCTCGTCCATGCATGA 61.056 55.000 28.31 11.26 0.00 3.07
2925 4050 0.604780 GATCCCCTCGTCCATGCATG 60.605 60.000 20.19 20.19 0.00 4.06
2926 4051 1.056125 TGATCCCCTCGTCCATGCAT 61.056 55.000 0.00 0.00 0.00 3.96
2927 4052 1.688884 TGATCCCCTCGTCCATGCA 60.689 57.895 0.00 0.00 0.00 3.96
2928 4053 1.227674 GTGATCCCCTCGTCCATGC 60.228 63.158 0.00 0.00 0.00 4.06
2929 4054 0.179073 GTGTGATCCCCTCGTCCATG 60.179 60.000 0.00 0.00 0.00 3.66
2930 4055 0.325671 AGTGTGATCCCCTCGTCCAT 60.326 55.000 0.00 0.00 0.00 3.41
2931 4056 1.078528 AGTGTGATCCCCTCGTCCA 59.921 57.895 0.00 0.00 0.00 4.02
2932 4057 1.517832 CAGTGTGATCCCCTCGTCC 59.482 63.158 0.00 0.00 0.00 4.79
2933 4058 1.517832 CCAGTGTGATCCCCTCGTC 59.482 63.158 0.00 0.00 0.00 4.20
2934 4059 2.660064 GCCAGTGTGATCCCCTCGT 61.660 63.158 0.00 0.00 0.00 4.18
2935 4060 1.043116 TAGCCAGTGTGATCCCCTCG 61.043 60.000 0.00 0.00 0.00 4.63
2936 4061 1.139853 CTTAGCCAGTGTGATCCCCTC 59.860 57.143 0.00 0.00 0.00 4.30
2937 4062 1.207791 CTTAGCCAGTGTGATCCCCT 58.792 55.000 0.00 0.00 0.00 4.79
2938 4063 0.464554 GCTTAGCCAGTGTGATCCCC 60.465 60.000 0.00 0.00 0.00 4.81
2939 4064 0.253044 TGCTTAGCCAGTGTGATCCC 59.747 55.000 0.29 0.00 0.00 3.85
2940 4065 1.740025 GTTGCTTAGCCAGTGTGATCC 59.260 52.381 0.29 0.00 0.00 3.36
2941 4066 1.394917 CGTTGCTTAGCCAGTGTGATC 59.605 52.381 0.29 0.00 0.00 2.92
2942 4067 1.442769 CGTTGCTTAGCCAGTGTGAT 58.557 50.000 0.29 0.00 0.00 3.06
2943 4068 0.602638 CCGTTGCTTAGCCAGTGTGA 60.603 55.000 0.29 0.00 0.00 3.58
2944 4069 1.868997 CCGTTGCTTAGCCAGTGTG 59.131 57.895 0.29 0.00 0.00 3.82
2945 4070 1.966451 GCCGTTGCTTAGCCAGTGT 60.966 57.895 0.29 0.00 33.53 3.55
2946 4071 2.870372 GCCGTTGCTTAGCCAGTG 59.130 61.111 0.29 0.00 33.53 3.66
2947 4072 2.742372 CGCCGTTGCTTAGCCAGT 60.742 61.111 0.29 0.00 34.43 4.00
2948 4073 4.166011 GCGCCGTTGCTTAGCCAG 62.166 66.667 0.29 0.00 34.43 4.85
2949 4074 4.697756 AGCGCCGTTGCTTAGCCA 62.698 61.111 2.29 0.00 44.46 4.75
2956 4081 2.202349 GACAATGAGCGCCGTTGC 60.202 61.111 22.65 15.10 43.80 4.17
2957 4082 0.168788 ATTGACAATGAGCGCCGTTG 59.831 50.000 21.69 21.69 45.12 4.10
2958 4083 0.447801 GATTGACAATGAGCGCCGTT 59.552 50.000 5.14 0.00 0.00 4.44
2959 4084 0.673333 TGATTGACAATGAGCGCCGT 60.673 50.000 5.14 0.00 0.00 5.68
2960 4085 0.659427 ATGATTGACAATGAGCGCCG 59.341 50.000 5.14 0.00 0.00 6.46
2961 4086 2.874701 ACTATGATTGACAATGAGCGCC 59.125 45.455 5.14 0.00 0.00 6.53
2962 4087 3.557185 TCACTATGATTGACAATGAGCGC 59.443 43.478 5.14 0.00 0.00 5.92
2963 4088 5.292834 ACTTCACTATGATTGACAATGAGCG 59.707 40.000 5.14 0.00 0.00 5.03
2964 4089 6.509199 CGACTTCACTATGATTGACAATGAGC 60.509 42.308 5.14 0.00 0.00 4.26
2965 4090 6.019237 CCGACTTCACTATGATTGACAATGAG 60.019 42.308 5.14 2.90 0.00 2.90
2966 4091 5.812127 CCGACTTCACTATGATTGACAATGA 59.188 40.000 5.14 0.00 0.00 2.57
2967 4092 5.812127 TCCGACTTCACTATGATTGACAATG 59.188 40.000 5.14 0.00 0.00 2.82
2968 4093 5.812642 GTCCGACTTCACTATGATTGACAAT 59.187 40.000 0.00 0.00 0.00 2.71
2969 4094 5.047306 AGTCCGACTTCACTATGATTGACAA 60.047 40.000 0.00 0.00 0.00 3.18
2970 4095 4.462834 AGTCCGACTTCACTATGATTGACA 59.537 41.667 0.00 0.00 0.00 3.58
2971 4096 4.800993 CAGTCCGACTTCACTATGATTGAC 59.199 45.833 0.00 0.00 0.00 3.18
2972 4097 4.678044 GCAGTCCGACTTCACTATGATTGA 60.678 45.833 0.00 0.00 0.00 2.57
2973 4098 3.553511 GCAGTCCGACTTCACTATGATTG 59.446 47.826 0.00 0.00 0.00 2.67
2974 4099 3.735208 CGCAGTCCGACTTCACTATGATT 60.735 47.826 0.00 0.00 40.02 2.57
2975 4100 2.223595 CGCAGTCCGACTTCACTATGAT 60.224 50.000 0.00 0.00 40.02 2.45
2976 4101 1.132453 CGCAGTCCGACTTCACTATGA 59.868 52.381 0.00 0.00 40.02 2.15
2977 4102 1.550065 CGCAGTCCGACTTCACTATG 58.450 55.000 0.00 0.00 40.02 2.23
2978 4103 0.179134 GCGCAGTCCGACTTCACTAT 60.179 55.000 0.30 0.00 40.02 2.12
2979 4104 1.211969 GCGCAGTCCGACTTCACTA 59.788 57.895 0.30 0.00 40.02 2.74
2980 4105 2.049063 GCGCAGTCCGACTTCACT 60.049 61.111 0.30 0.00 40.02 3.41
2981 4106 3.112709 GGCGCAGTCCGACTTCAC 61.113 66.667 10.83 0.00 43.29 3.18
3023 4148 4.981806 TCTGTTTGTTTCCTTGTCCTTG 57.018 40.909 0.00 0.00 0.00 3.61
3047 4172 5.107133 CCCAACTATAGTGAAGTAACACGG 58.893 45.833 6.06 0.00 44.35 4.94
3049 4174 6.070938 ACTCCCCAACTATAGTGAAGTAACAC 60.071 42.308 6.06 0.00 40.60 3.32
3086 4211 4.785346 ACATTCACATCCCTGCTAATCT 57.215 40.909 0.00 0.00 0.00 2.40
3087 4212 4.641989 ACAACATTCACATCCCTGCTAATC 59.358 41.667 0.00 0.00 0.00 1.75
3088 4213 4.603131 ACAACATTCACATCCCTGCTAAT 58.397 39.130 0.00 0.00 0.00 1.73
3089 4214 4.032960 ACAACATTCACATCCCTGCTAA 57.967 40.909 0.00 0.00 0.00 3.09
3091 4216 2.592102 ACAACATTCACATCCCTGCT 57.408 45.000 0.00 0.00 0.00 4.24
3092 4217 3.428045 GCTAACAACATTCACATCCCTGC 60.428 47.826 0.00 0.00 0.00 4.85
3093 4218 3.129287 GGCTAACAACATTCACATCCCTG 59.871 47.826 0.00 0.00 0.00 4.45
3094 4219 3.245229 TGGCTAACAACATTCACATCCCT 60.245 43.478 0.00 0.00 0.00 4.20
3095 4220 3.088532 TGGCTAACAACATTCACATCCC 58.911 45.455 0.00 0.00 0.00 3.85
3122 4248 3.380004 GCTGTCTGTGTGCTAGATAGACT 59.620 47.826 0.00 0.00 38.76 3.24
3144 4270 1.601419 CCCAAATGCAGCCCAGACTG 61.601 60.000 0.00 0.00 40.80 3.51
3145 4271 1.304713 CCCAAATGCAGCCCAGACT 60.305 57.895 0.00 0.00 0.00 3.24
3146 4272 0.899717 TTCCCAAATGCAGCCCAGAC 60.900 55.000 0.00 0.00 0.00 3.51
3147 4273 0.899717 GTTCCCAAATGCAGCCCAGA 60.900 55.000 0.00 0.00 0.00 3.86
3148 4274 1.186917 TGTTCCCAAATGCAGCCCAG 61.187 55.000 0.00 0.00 0.00 4.45
3149 4275 1.152376 TGTTCCCAAATGCAGCCCA 60.152 52.632 0.00 0.00 0.00 5.36
3150 4276 0.899717 TCTGTTCCCAAATGCAGCCC 60.900 55.000 0.00 0.00 0.00 5.19
3152 4278 0.109597 CGTCTGTTCCCAAATGCAGC 60.110 55.000 0.00 0.00 0.00 5.25
3153 4279 1.522668 TCGTCTGTTCCCAAATGCAG 58.477 50.000 0.00 0.00 0.00 4.41
3160 4287 5.984725 ACATAACAATATCGTCTGTTCCCA 58.015 37.500 0.00 0.00 37.05 4.37
3162 4289 8.009974 GCATAACATAACAATATCGTCTGTTCC 58.990 37.037 0.00 0.00 37.05 3.62
3165 4292 6.145534 CGGCATAACATAACAATATCGTCTGT 59.854 38.462 0.00 0.00 0.00 3.41
3180 4307 1.819928 TGTTCTGCACGGCATAACAT 58.180 45.000 18.79 0.00 45.70 2.71
3185 4312 1.002257 TCCATGTTCTGCACGGCAT 60.002 52.632 0.00 0.00 38.13 4.40
3201 4328 8.535335 TGAATATGTTGATAGAGGAATAGCTCC 58.465 37.037 0.00 0.00 45.81 4.70
3247 4374 3.751698 GGGTGACGCAACTTTTATCTTCT 59.248 43.478 0.00 0.00 0.00 2.85
3268 4395 4.115516 CGACATGACCTGTTTATGAGAGG 58.884 47.826 0.00 0.00 44.34 3.69
3270 4397 3.521560 GCGACATGACCTGTTTATGAGA 58.478 45.455 0.00 0.00 38.54 3.27
3271 4398 2.609459 GGCGACATGACCTGTTTATGAG 59.391 50.000 0.00 0.00 38.54 2.90
3272 4399 2.027653 TGGCGACATGACCTGTTTATGA 60.028 45.455 0.00 0.00 38.54 2.15
3273 4400 2.095853 GTGGCGACATGACCTGTTTATG 59.904 50.000 0.00 0.00 46.14 1.90
3274 4401 2.356135 GTGGCGACATGACCTGTTTAT 58.644 47.619 0.00 0.00 46.14 1.40
3275 4402 1.803334 GTGGCGACATGACCTGTTTA 58.197 50.000 0.00 0.00 46.14 2.01
3276 4403 2.629002 GTGGCGACATGACCTGTTT 58.371 52.632 0.00 0.00 46.14 2.83
3277 4404 4.379174 GTGGCGACATGACCTGTT 57.621 55.556 0.00 0.00 46.14 3.16
3285 4412 1.233950 TTCATTGTGCGTGGCGACAT 61.234 50.000 0.00 0.00 46.14 3.06
3286 4413 1.889573 TTCATTGTGCGTGGCGACA 60.890 52.632 0.00 0.00 38.70 4.35
3287 4414 1.440353 GTTCATTGTGCGTGGCGAC 60.440 57.895 0.00 0.00 0.00 5.19
3288 4415 1.163420 AAGTTCATTGTGCGTGGCGA 61.163 50.000 0.00 0.00 0.00 5.54
3289 4416 0.998226 CAAGTTCATTGTGCGTGGCG 60.998 55.000 0.00 0.00 33.95 5.69
3290 4417 0.310543 TCAAGTTCATTGTGCGTGGC 59.689 50.000 0.00 0.00 40.05 5.01
3291 4418 1.872952 TCTCAAGTTCATTGTGCGTGG 59.127 47.619 0.00 0.00 40.05 4.94
3292 4419 3.248363 TCTTCTCAAGTTCATTGTGCGTG 59.752 43.478 0.00 0.00 40.05 5.34
3293 4420 3.248602 GTCTTCTCAAGTTCATTGTGCGT 59.751 43.478 0.00 0.00 40.05 5.24
3294 4421 3.662713 CGTCTTCTCAAGTTCATTGTGCG 60.663 47.826 0.00 0.00 40.05 5.34
3295 4422 3.494626 TCGTCTTCTCAAGTTCATTGTGC 59.505 43.478 0.00 0.00 40.05 4.57
3296 4423 5.163913 GGATCGTCTTCTCAAGTTCATTGTG 60.164 44.000 0.00 0.00 40.05 3.33
3297 4424 4.932200 GGATCGTCTTCTCAAGTTCATTGT 59.068 41.667 0.00 0.00 40.05 2.71
3298 4425 4.931601 TGGATCGTCTTCTCAAGTTCATTG 59.068 41.667 0.00 0.00 40.52 2.82
3299 4426 5.047021 TCTGGATCGTCTTCTCAAGTTCATT 60.047 40.000 0.00 0.00 0.00 2.57
3300 4427 4.464244 TCTGGATCGTCTTCTCAAGTTCAT 59.536 41.667 0.00 0.00 0.00 2.57
3301 4428 3.826729 TCTGGATCGTCTTCTCAAGTTCA 59.173 43.478 0.00 0.00 0.00 3.18
3302 4429 4.442375 TCTGGATCGTCTTCTCAAGTTC 57.558 45.455 0.00 0.00 0.00 3.01
3303 4430 5.413309 AATCTGGATCGTCTTCTCAAGTT 57.587 39.130 0.00 0.00 0.00 2.66
3311 4438 5.186021 ACTGACTTGTAATCTGGATCGTCTT 59.814 40.000 0.00 0.00 0.00 3.01
3315 4442 4.998788 TGACTGACTTGTAATCTGGATCG 58.001 43.478 0.00 0.00 0.00 3.69
3347 4503 3.417185 CTCGGCTTGATTAAAAACGCTC 58.583 45.455 0.00 0.00 0.00 5.03
3373 4529 1.135083 CCCGCGTAGAGACTCAACAAT 60.135 52.381 4.92 0.00 0.00 2.71
3374 4530 0.242825 CCCGCGTAGAGACTCAACAA 59.757 55.000 4.92 0.00 0.00 2.83
3376 4532 1.516603 GCCCGCGTAGAGACTCAAC 60.517 63.158 4.92 0.00 0.00 3.18
3377 4533 2.707849 GGCCCGCGTAGAGACTCAA 61.708 63.158 4.92 0.00 0.00 3.02
3379 4535 2.707849 TTGGCCCGCGTAGAGACTC 61.708 63.158 4.92 0.00 0.00 3.36
3380 4536 2.678934 TTGGCCCGCGTAGAGACT 60.679 61.111 4.92 0.00 0.00 3.24
3381 4537 2.508663 GTTGGCCCGCGTAGAGAC 60.509 66.667 4.92 0.00 0.00 3.36
3382 4538 3.766691 GGTTGGCCCGCGTAGAGA 61.767 66.667 4.92 0.00 0.00 3.10
3389 5762 1.811645 TAAAAGCAAGGTTGGCCCGC 61.812 55.000 0.00 0.00 38.74 6.13
3393 5766 4.819088 TCCAAAAATAAAAGCAAGGTTGGC 59.181 37.500 0.00 0.00 35.34 4.52
3414 5788 1.182667 AAAGCTGGCCCGTTTAATCC 58.817 50.000 0.00 0.00 0.00 3.01
3433 5807 4.202212 GCTGGCCCAGTTTCTTAAGAAAAA 60.202 41.667 27.81 8.70 44.58 1.94
3434 5808 3.320826 GCTGGCCCAGTTTCTTAAGAAAA 59.679 43.478 27.81 12.69 44.58 2.29
3435 5809 2.890945 GCTGGCCCAGTTTCTTAAGAAA 59.109 45.455 23.65 23.65 35.53 2.52
3436 5810 2.514803 GCTGGCCCAGTTTCTTAAGAA 58.485 47.619 13.99 13.99 33.43 2.52
3437 5811 1.271926 GGCTGGCCCAGTTTCTTAAGA 60.272 52.381 13.35 0.00 33.43 2.10
3438 5812 1.177401 GGCTGGCCCAGTTTCTTAAG 58.823 55.000 13.35 0.00 33.43 1.85
3439 5813 0.777446 AGGCTGGCCCAGTTTCTTAA 59.223 50.000 13.35 0.00 36.58 1.85
3440 5814 0.777446 AAGGCTGGCCCAGTTTCTTA 59.223 50.000 13.35 0.00 36.58 2.10
3441 5815 0.829182 CAAGGCTGGCCCAGTTTCTT 60.829 55.000 13.35 10.90 36.58 2.52
3442 5816 1.228675 CAAGGCTGGCCCAGTTTCT 60.229 57.895 13.35 5.14 36.58 2.52
3443 5817 2.935740 GCAAGGCTGGCCCAGTTTC 61.936 63.158 13.35 2.74 36.58 2.78
3444 5818 2.080336 TAGCAAGGCTGGCCCAGTTT 62.080 55.000 13.35 4.71 40.10 2.66
3445 5819 2.080336 TTAGCAAGGCTGGCCCAGTT 62.080 55.000 13.35 0.00 40.10 3.16
3446 5820 1.867595 ATTAGCAAGGCTGGCCCAGT 61.868 55.000 13.35 0.00 40.10 4.00
3447 5821 1.076485 ATTAGCAAGGCTGGCCCAG 60.076 57.895 11.06 6.32 40.10 4.45
3478 5852 0.656259 GAAAAATAGCTCGGTCCGGC 59.344 55.000 12.29 13.71 0.00 6.13
3481 5855 2.356135 TGCTGAAAAATAGCTCGGTCC 58.644 47.619 0.00 0.00 41.66 4.46
3498 5872 2.105766 GCTGGGATCCATTTTCTTGCT 58.894 47.619 15.23 0.00 30.82 3.91
3500 5874 1.758862 GGGCTGGGATCCATTTTCTTG 59.241 52.381 15.23 0.00 30.82 3.02
3512 5886 2.371510 CAAAAGGAAATTTGGGCTGGGA 59.628 45.455 0.00 0.00 36.79 4.37
3528 5902 1.547372 CCTTGATGAGCACCCCAAAAG 59.453 52.381 0.00 0.00 0.00 2.27
3529 5903 1.631405 CCTTGATGAGCACCCCAAAA 58.369 50.000 0.00 0.00 0.00 2.44
3530 5904 0.899717 GCCTTGATGAGCACCCCAAA 60.900 55.000 0.00 0.00 0.00 3.28
3531 5905 1.304381 GCCTTGATGAGCACCCCAA 60.304 57.895 0.00 0.00 0.00 4.12
3532 5906 1.792757 AAGCCTTGATGAGCACCCCA 61.793 55.000 0.00 0.00 0.00 4.96
3533 5907 1.000396 AAGCCTTGATGAGCACCCC 60.000 57.895 0.00 0.00 0.00 4.95
3534 5908 0.322816 TCAAGCCTTGATGAGCACCC 60.323 55.000 2.24 0.00 34.08 4.61
3535 5909 3.254629 TCAAGCCTTGATGAGCACC 57.745 52.632 2.24 0.00 34.08 5.01
3543 5917 1.304282 GGCCAGGATCAAGCCTTGA 59.696 57.895 10.01 10.01 43.62 3.02
3544 5918 1.755783 GGGCCAGGATCAAGCCTTG 60.756 63.158 16.62 0.00 46.31 3.61
3545 5919 1.803453 TTGGGCCAGGATCAAGCCTT 61.803 55.000 6.23 0.00 46.31 4.35
3546 5920 1.803453 TTTGGGCCAGGATCAAGCCT 61.803 55.000 6.23 0.00 46.31 4.58
3547 5921 1.305213 TTTGGGCCAGGATCAAGCC 60.305 57.895 6.23 10.57 46.37 4.35
3548 5922 0.613012 ACTTTGGGCCAGGATCAAGC 60.613 55.000 13.52 0.00 0.00 4.01
3549 5923 2.290896 TGTACTTTGGGCCAGGATCAAG 60.291 50.000 6.23 9.96 0.00 3.02
3550 5924 1.707989 TGTACTTTGGGCCAGGATCAA 59.292 47.619 6.23 0.00 0.00 2.57
3551 5925 1.367346 TGTACTTTGGGCCAGGATCA 58.633 50.000 6.23 1.28 0.00 2.92
3552 5926 2.369394 CTTGTACTTTGGGCCAGGATC 58.631 52.381 6.23 0.00 0.00 3.36
3553 5927 1.616994 GCTTGTACTTTGGGCCAGGAT 60.617 52.381 6.23 0.00 0.00 3.24
3554 5928 0.251165 GCTTGTACTTTGGGCCAGGA 60.251 55.000 6.23 0.00 0.00 3.86
3555 5929 1.250840 GGCTTGTACTTTGGGCCAGG 61.251 60.000 6.23 6.68 42.08 4.45
3556 5930 0.539438 TGGCTTGTACTTTGGGCCAG 60.539 55.000 6.23 0.00 46.35 4.85
3557 5931 4.511838 GGCTTGTACTTTGGGCCA 57.488 55.556 0.00 0.00 42.08 5.36
3558 5932 1.044611 TTTGGCTTGTACTTTGGGCC 58.955 50.000 0.00 0.00 42.73 5.80
3559 5933 1.686587 AGTTTGGCTTGTACTTTGGGC 59.313 47.619 0.00 0.00 0.00 5.36
3560 5934 2.031157 CGAGTTTGGCTTGTACTTTGGG 60.031 50.000 0.00 0.00 0.00 4.12
3561 5935 2.875933 TCGAGTTTGGCTTGTACTTTGG 59.124 45.455 0.00 0.00 0.00 3.28
3562 5936 4.452455 AGATCGAGTTTGGCTTGTACTTTG 59.548 41.667 0.00 0.00 0.00 2.77
3563 5937 4.452455 CAGATCGAGTTTGGCTTGTACTTT 59.548 41.667 0.00 0.00 0.00 2.66
3564 5938 3.997021 CAGATCGAGTTTGGCTTGTACTT 59.003 43.478 0.00 0.00 0.00 2.24
3565 5939 3.258372 TCAGATCGAGTTTGGCTTGTACT 59.742 43.478 0.00 0.00 0.00 2.73
3566 5940 3.585862 TCAGATCGAGTTTGGCTTGTAC 58.414 45.455 0.00 0.00 0.00 2.90
3567 5941 3.953712 TCAGATCGAGTTTGGCTTGTA 57.046 42.857 0.00 0.00 0.00 2.41
3568 5942 2.839486 TCAGATCGAGTTTGGCTTGT 57.161 45.000 0.00 0.00 0.00 3.16
3569 5943 3.940657 GATCAGATCGAGTTTGGCTTG 57.059 47.619 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.