Multiple sequence alignment - TraesCS7D01G190500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G190500 chr7D 100.000 3545 0 0 1 3545 145910207 145906663 0.000000e+00 6547.0
1 TraesCS7D01G190500 chr7D 88.321 137 16 0 5 141 230998155 230998019 7.870000e-37 165.0
2 TraesCS7D01G190500 chr7A 95.383 2296 73 11 1101 3388 146680385 146678115 0.000000e+00 3622.0
3 TraesCS7D01G190500 chr7A 89.926 407 33 6 272 674 146868529 146868127 5.250000e-143 518.0
4 TraesCS7D01G190500 chr7A 87.395 357 27 8 758 1105 146686929 146686582 9.220000e-106 394.0
5 TraesCS7D01G190500 chr7A 90.074 272 27 0 1 272 146868925 146868654 1.570000e-93 353.0
6 TraesCS7D01G190500 chr7A 98.256 172 3 0 3374 3545 146678096 146677925 5.750000e-78 302.0
7 TraesCS7D01G190500 chr7A 94.828 58 3 0 669 726 146687261 146687204 1.360000e-14 91.6
8 TraesCS7D01G190500 chr7B 92.058 2191 135 21 769 2944 107978263 107976097 0.000000e+00 3046.0
9 TraesCS7D01G190500 chr7B 91.602 512 37 2 3034 3545 107976051 107975546 0.000000e+00 702.0
10 TraesCS7D01G190500 chr7B 89.902 307 23 7 409 713 107978570 107978270 4.290000e-104 388.0
11 TraesCS7D01G190500 chr7B 84.173 139 16 6 272 406 107982157 107982021 2.870000e-26 130.0
12 TraesCS7D01G190500 chr7B 100.000 35 0 0 714 748 107978280 107978246 8.210000e-07 65.8
13 TraesCS7D01G190500 chr2D 88.321 137 16 0 1 137 604074914 604075050 7.870000e-37 165.0
14 TraesCS7D01G190500 chr5B 85.621 153 20 2 1 152 54507816 54507665 3.660000e-35 159.0
15 TraesCS7D01G190500 chr1B 87.234 141 17 1 2 142 604149798 604149659 3.660000e-35 159.0
16 TraesCS7D01G190500 chr4D 87.407 135 17 0 8 142 455753258 455753124 4.740000e-34 156.0
17 TraesCS7D01G190500 chr4D 86.331 139 18 1 1 138 358073716 358073854 2.200000e-32 150.0
18 TraesCS7D01G190500 chr4B 86.331 139 18 1 1 138 441164631 441164769 2.200000e-32 150.0
19 TraesCS7D01G190500 chr5A 85.315 143 21 0 1 143 567688951 567688809 7.930000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G190500 chr7D 145906663 145910207 3544 True 6547.00 6547 100.0000 1 3545 1 chr7D.!!$R1 3544
1 TraesCS7D01G190500 chr7A 146677925 146680385 2460 True 1962.00 3622 96.8195 1101 3545 2 chr7A.!!$R1 2444
2 TraesCS7D01G190500 chr7A 146868127 146868925 798 True 435.50 518 90.0000 1 674 2 chr7A.!!$R3 673
3 TraesCS7D01G190500 chr7A 146686582 146687261 679 True 242.80 394 91.1115 669 1105 2 chr7A.!!$R2 436
4 TraesCS7D01G190500 chr7B 107975546 107982157 6611 True 866.36 3046 91.5470 272 3545 5 chr7B.!!$R1 3273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.173481 CTCGCCGGTGAAGATCAAGA 59.827 55.0 20.06 0.00 0.00 3.02 F
870 4710 0.250234 CAGGAGCTTCGGGACAATGA 59.750 55.0 0.00 0.00 0.00 2.57 F
1398 5254 0.694771 TGGGCTTCTTGAGTGATGCT 59.305 50.0 0.00 0.00 37.31 3.79 F
2427 6283 0.459585 TCTCTGGCATTTACGCGTCC 60.460 55.0 18.63 11.65 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 5814 0.336737 ATCCCTCTCCTTCGTCCTGT 59.663 55.000 0.00 0.00 0.0 4.00 R
2385 6241 0.041839 GCACATAATCTCCGCTTGCG 60.042 55.000 8.14 8.14 0.0 4.85 R
2444 6300 1.002134 CCCCGCAATGTCTCCACTT 60.002 57.895 0.00 0.00 0.0 3.16 R
3322 7188 6.017852 GCACCAATAACTTTATCAGCTACTCC 60.018 42.308 0.00 0.00 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.956964 CGCTCGCCGGTGAAGATC 60.957 66.667 20.06 7.57 0.00 2.75
92 93 2.184322 GCTCGCCGGTGAAGATCA 59.816 61.111 20.06 0.00 0.00 2.92
95 96 0.173481 CTCGCCGGTGAAGATCAAGA 59.827 55.000 20.06 0.00 0.00 3.02
102 103 2.497675 CGGTGAAGATCAAGAGGAGGAA 59.502 50.000 0.00 0.00 0.00 3.36
108 109 4.835284 AGATCAAGAGGAGGAAGGTTTC 57.165 45.455 0.00 0.00 0.00 2.78
124 125 0.329931 TTTCCCCTAATCGCCTTGCA 59.670 50.000 0.00 0.00 0.00 4.08
141 142 1.271597 TGCAAGAGGGGAAAGAAGAGC 60.272 52.381 0.00 0.00 0.00 4.09
143 144 2.709213 CAAGAGGGGAAAGAAGAGCTG 58.291 52.381 0.00 0.00 0.00 4.24
144 145 2.304180 CAAGAGGGGAAAGAAGAGCTGA 59.696 50.000 0.00 0.00 0.00 4.26
160 161 6.291648 AGAGCTGATTGTCTTCTATGTTGA 57.708 37.500 0.00 0.00 0.00 3.18
161 162 6.887013 AGAGCTGATTGTCTTCTATGTTGAT 58.113 36.000 0.00 0.00 0.00 2.57
255 256 7.738437 ATCCATATCCAAACCAACATTTCTT 57.262 32.000 0.00 0.00 0.00 2.52
261 262 4.331168 TCCAAACCAACATTTCTTTTTGCG 59.669 37.500 0.00 0.00 0.00 4.85
295 421 0.980754 ATGACCGCCCACACATCCTA 60.981 55.000 0.00 0.00 0.00 2.94
472 4049 1.477685 TTCCCCTCAGTTCCACGTCC 61.478 60.000 0.00 0.00 0.00 4.79
561 4138 1.806568 GCGAGACAGGTCAGAGGAG 59.193 63.158 1.84 0.00 0.00 3.69
562 4139 0.963355 GCGAGACAGGTCAGAGGAGT 60.963 60.000 1.84 0.00 0.00 3.85
702 4279 2.899256 CCTCCCATCACCAACAAAACAT 59.101 45.455 0.00 0.00 0.00 2.71
703 4280 3.056607 CCTCCCATCACCAACAAAACATC 60.057 47.826 0.00 0.00 0.00 3.06
704 4281 2.896685 TCCCATCACCAACAAAACATCC 59.103 45.455 0.00 0.00 0.00 3.51
705 4282 2.632028 CCCATCACCAACAAAACATCCA 59.368 45.455 0.00 0.00 0.00 3.41
706 4283 3.070734 CCCATCACCAACAAAACATCCAA 59.929 43.478 0.00 0.00 0.00 3.53
707 4284 4.444022 CCCATCACCAACAAAACATCCAAA 60.444 41.667 0.00 0.00 0.00 3.28
708 4285 5.307204 CCATCACCAACAAAACATCCAAAT 58.693 37.500 0.00 0.00 0.00 2.32
709 4286 5.764192 CCATCACCAACAAAACATCCAAATT 59.236 36.000 0.00 0.00 0.00 1.82
710 4287 6.293516 CCATCACCAACAAAACATCCAAATTG 60.294 38.462 0.00 0.00 0.00 2.32
711 4288 4.574013 TCACCAACAAAACATCCAAATTGC 59.426 37.500 0.00 0.00 0.00 3.56
712 4289 4.575645 CACCAACAAAACATCCAAATTGCT 59.424 37.500 0.00 0.00 0.00 3.91
748 4572 1.892474 GCATCCAGCAACTAAACCCAA 59.108 47.619 0.00 0.00 44.79 4.12
749 4573 2.497273 GCATCCAGCAACTAAACCCAAT 59.503 45.455 0.00 0.00 44.79 3.16
750 4574 3.429410 GCATCCAGCAACTAAACCCAATC 60.429 47.826 0.00 0.00 44.79 2.67
751 4575 2.432444 TCCAGCAACTAAACCCAATCG 58.568 47.619 0.00 0.00 0.00 3.34
752 4576 2.159382 CCAGCAACTAAACCCAATCGT 58.841 47.619 0.00 0.00 0.00 3.73
753 4577 3.008157 TCCAGCAACTAAACCCAATCGTA 59.992 43.478 0.00 0.00 0.00 3.43
754 4578 3.126343 CCAGCAACTAAACCCAATCGTAC 59.874 47.826 0.00 0.00 0.00 3.67
755 4579 3.126343 CAGCAACTAAACCCAATCGTACC 59.874 47.826 0.00 0.00 0.00 3.34
756 4580 3.075884 GCAACTAAACCCAATCGTACCA 58.924 45.455 0.00 0.00 0.00 3.25
785 4617 1.069823 CCTATCCACAGCTACAGCCAG 59.930 57.143 0.00 0.00 43.38 4.85
800 4632 2.432456 CAGCAACTACAGCGGCGA 60.432 61.111 12.98 0.00 37.01 5.54
867 4707 2.347490 GCAGGAGCTTCGGGACAA 59.653 61.111 0.00 0.00 37.91 3.18
870 4710 0.250234 CAGGAGCTTCGGGACAATGA 59.750 55.000 0.00 0.00 0.00 2.57
896 4740 2.358247 CACGGCCCAGCGTAAGTT 60.358 61.111 0.00 0.00 41.68 2.66
897 4741 2.047560 ACGGCCCAGCGTAAGTTC 60.048 61.111 0.00 0.00 41.68 3.01
898 4742 2.818274 CGGCCCAGCGTAAGTTCC 60.818 66.667 0.00 0.00 41.68 3.62
899 4743 2.349755 GGCCCAGCGTAAGTTCCA 59.650 61.111 0.00 0.00 41.68 3.53
900 4744 1.745489 GGCCCAGCGTAAGTTCCAG 60.745 63.158 0.00 0.00 41.68 3.86
1209 5065 0.873721 TCATGCACAACGTCATGGTG 59.126 50.000 13.22 9.39 40.20 4.17
1372 5228 4.129737 AGGTCCATGGCGTCGTCG 62.130 66.667 6.96 0.00 40.37 5.12
1398 5254 0.694771 TGGGCTTCTTGAGTGATGCT 59.305 50.000 0.00 0.00 37.31 3.79
1450 5306 1.085501 CAAATGCGGGGATTTGCAGC 61.086 55.000 11.76 0.00 45.52 5.25
1661 5517 1.194781 AGGGAGCTGATTGACCGTGT 61.195 55.000 0.00 0.00 0.00 4.49
1680 5536 1.153549 GCCGGAGACAGATGTGGTC 60.154 63.158 5.05 0.00 35.50 4.02
1888 5744 5.990120 AGGTAGACCGTGTACAAGTATTT 57.010 39.130 8.02 0.00 42.08 1.40
1906 5762 3.900388 TTTTGCTTGGAAATGCATTGC 57.100 38.095 13.82 11.40 39.07 3.56
1958 5814 3.507233 CAGGCTGCATTGGAAGTCTTTAA 59.493 43.478 0.00 0.00 29.75 1.52
2187 6043 1.751924 GACTGGTACAAGATCGAGCCT 59.248 52.381 3.64 0.00 38.70 4.58
2209 6065 3.077339 GCAAAGCACTACAGTTGCG 57.923 52.632 0.00 0.00 37.25 4.85
2385 6241 8.049655 AGAGGCTTCTAAAAATGAATGAAGAC 57.950 34.615 0.00 0.00 41.60 3.01
2427 6283 0.459585 TCTCTGGCATTTACGCGTCC 60.460 55.000 18.63 11.65 0.00 4.79
2444 6300 3.073678 CGTCCTGTGATGAATGGTTTGA 58.926 45.455 0.00 0.00 0.00 2.69
2492 6348 4.079154 GGATGAAAGGGGGATAAGAAAGGT 60.079 45.833 0.00 0.00 0.00 3.50
2522 6378 2.524306 TGCCCAGGTTGACCATAAAAG 58.476 47.619 2.56 0.00 38.89 2.27
2524 6380 3.074687 TGCCCAGGTTGACCATAAAAGTA 59.925 43.478 2.56 0.00 38.89 2.24
2533 6389 6.148976 GGTTGACCATAAAAGTACCTGTCTTC 59.851 42.308 0.00 0.00 35.64 2.87
2539 6395 4.373156 AAAAGTACCTGTCTTCCAGCAT 57.627 40.909 0.00 0.00 40.06 3.79
2540 6396 4.373156 AAAGTACCTGTCTTCCAGCATT 57.627 40.909 0.00 0.00 40.06 3.56
2541 6397 3.340814 AGTACCTGTCTTCCAGCATTG 57.659 47.619 0.00 0.00 40.06 2.82
2542 6398 2.639839 AGTACCTGTCTTCCAGCATTGT 59.360 45.455 0.00 0.00 40.06 2.71
2543 6399 1.901591 ACCTGTCTTCCAGCATTGTG 58.098 50.000 0.00 0.00 40.06 3.33
2544 6400 1.421268 ACCTGTCTTCCAGCATTGTGA 59.579 47.619 0.00 0.00 40.06 3.58
2545 6401 2.158623 ACCTGTCTTCCAGCATTGTGAA 60.159 45.455 0.00 0.00 40.06 3.18
2546 6402 3.087031 CCTGTCTTCCAGCATTGTGAAT 58.913 45.455 0.00 0.00 40.06 2.57
2595 6451 5.639931 TGAAATTCGATGAACGTGTGGATTA 59.360 36.000 0.00 0.00 43.13 1.75
2625 6481 4.219070 TGCTCAGCTTGTCATTTTATGCTT 59.781 37.500 0.00 0.00 0.00 3.91
2681 6537 7.448777 CCTAATAGACAGATACCACTAGCAAGA 59.551 40.741 0.00 0.00 0.00 3.02
2846 6702 8.767478 TTACCAGCAACTACTATGAAAAGTAC 57.233 34.615 0.00 0.00 0.00 2.73
2930 6791 1.414919 AGAAGTAACACCGTCAAGGCA 59.585 47.619 0.00 0.00 46.52 4.75
2972 6833 1.065126 AGCAAGAGAATAGGCCCACAC 60.065 52.381 0.00 0.00 0.00 3.82
3009 6870 1.774856 AGCAAGTACAAGAACCACCCT 59.225 47.619 0.00 0.00 0.00 4.34
3014 6880 2.104281 AGTACAAGAACCACCCTCACAC 59.896 50.000 0.00 0.00 0.00 3.82
3454 7353 3.503748 ACTGGCACACTTTGAATTAGAGC 59.496 43.478 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.768344 GGATTCGCCTCCCCTCCA 60.768 66.667 0.00 0.00 0.00 3.86
74 75 2.956964 GATCTTCACCGGCGAGCG 60.957 66.667 9.30 0.00 0.00 5.03
83 84 3.517500 ACCTTCCTCCTCTTGATCTTCAC 59.482 47.826 0.00 0.00 0.00 3.18
84 85 3.796111 ACCTTCCTCCTCTTGATCTTCA 58.204 45.455 0.00 0.00 0.00 3.02
108 109 0.107214 TCTTGCAAGGCGATTAGGGG 60.107 55.000 25.73 0.00 0.00 4.79
111 112 1.303309 CCCTCTTGCAAGGCGATTAG 58.697 55.000 25.73 14.21 34.88 1.73
114 115 1.852157 TTCCCCTCTTGCAAGGCGAT 61.852 55.000 25.73 0.00 34.88 4.58
115 116 2.063015 TTTCCCCTCTTGCAAGGCGA 62.063 55.000 25.73 12.96 34.88 5.54
124 125 2.625639 TCAGCTCTTCTTTCCCCTCTT 58.374 47.619 0.00 0.00 0.00 2.85
196 197 9.435688 TTTGGTATCTGATTGATGGTATTATCG 57.564 33.333 0.00 0.00 36.65 2.92
204 205 9.701098 CCATTATTTTTGGTATCTGATTGATGG 57.299 33.333 0.00 0.00 36.65 3.51
253 254 5.811399 TCAGTGGATATAACCGCAAAAAG 57.189 39.130 14.32 0.48 42.22 2.27
255 256 5.883115 TCATTCAGTGGATATAACCGCAAAA 59.117 36.000 14.32 8.32 42.22 2.44
261 262 3.746492 GCGGTCATTCAGTGGATATAACC 59.254 47.826 0.00 0.00 0.00 2.85
295 421 3.186119 CACAAAAACAATGGCGTTCTGT 58.814 40.909 0.00 0.00 0.00 3.41
344 470 6.970484 AGTGAAAAAGTGTGCCATTTAGTAG 58.030 36.000 0.00 0.00 0.00 2.57
419 3996 2.552315 GCCATTTTGTCCAACTCTCGAA 59.448 45.455 0.00 0.00 0.00 3.71
421 3998 1.879380 TGCCATTTTGTCCAACTCTCG 59.121 47.619 0.00 0.00 0.00 4.04
429 4006 3.747529 CCTCAATTTGTGCCATTTTGTCC 59.252 43.478 0.00 0.00 0.00 4.02
451 4028 0.108019 ACGTGGAACTGAGGGGAAAC 59.892 55.000 0.00 0.00 31.75 2.78
524 4101 0.096976 CGCCTGCTTTATGGTCGTTG 59.903 55.000 0.00 0.00 0.00 4.10
533 4110 1.446099 CTGTCTCGCGCCTGCTTTA 60.446 57.895 0.00 0.00 39.65 1.85
702 4279 4.354893 AGCATTTTGGAAGCAATTTGGA 57.645 36.364 0.00 0.00 0.00 3.53
703 4280 4.996122 TGTAGCATTTTGGAAGCAATTTGG 59.004 37.500 0.00 0.00 0.00 3.28
704 4281 5.121142 CCTGTAGCATTTTGGAAGCAATTTG 59.879 40.000 0.00 0.00 0.00 2.32
705 4282 5.240121 CCTGTAGCATTTTGGAAGCAATTT 58.760 37.500 0.00 0.00 0.00 1.82
706 4283 4.824289 CCTGTAGCATTTTGGAAGCAATT 58.176 39.130 0.00 0.00 0.00 2.32
707 4284 3.368739 GCCTGTAGCATTTTGGAAGCAAT 60.369 43.478 0.00 0.00 42.97 3.56
708 4285 2.029110 GCCTGTAGCATTTTGGAAGCAA 60.029 45.455 0.00 0.00 42.97 3.91
709 4286 1.545582 GCCTGTAGCATTTTGGAAGCA 59.454 47.619 0.00 0.00 42.97 3.91
710 4287 2.284263 GCCTGTAGCATTTTGGAAGC 57.716 50.000 0.00 0.00 42.97 3.86
748 4572 1.079127 GGTGCTGCTGTGGTACGAT 60.079 57.895 0.00 0.00 0.00 3.73
749 4573 0.896479 TAGGTGCTGCTGTGGTACGA 60.896 55.000 0.00 0.00 0.00 3.43
750 4574 0.175760 ATAGGTGCTGCTGTGGTACG 59.824 55.000 0.00 0.00 0.00 3.67
751 4575 1.473434 GGATAGGTGCTGCTGTGGTAC 60.473 57.143 0.00 0.00 0.00 3.34
752 4576 0.830648 GGATAGGTGCTGCTGTGGTA 59.169 55.000 0.00 0.00 0.00 3.25
753 4577 1.200760 TGGATAGGTGCTGCTGTGGT 61.201 55.000 0.00 0.00 0.00 4.16
754 4578 0.745845 GTGGATAGGTGCTGCTGTGG 60.746 60.000 0.00 0.00 0.00 4.17
755 4579 0.036105 TGTGGATAGGTGCTGCTGTG 60.036 55.000 0.00 0.00 0.00 3.66
756 4580 0.251354 CTGTGGATAGGTGCTGCTGT 59.749 55.000 0.00 0.00 0.00 4.40
785 4617 2.730672 CTGTCGCCGCTGTAGTTGC 61.731 63.158 0.00 0.00 0.00 4.17
839 4679 2.433446 CTCCTGCTGGCTGGTTGT 59.567 61.111 16.03 0.00 36.57 3.32
864 4704 2.108514 CGTGCGCCAGGATCATTGT 61.109 57.895 4.18 0.00 0.00 2.71
889 4733 2.769617 CGTGCGCTGGAACTTACG 59.230 61.111 9.73 3.16 0.00 3.18
890 4734 2.474712 GCGTGCGCTGGAACTTAC 59.525 61.111 9.73 0.00 38.26 2.34
891 4735 2.740826 GGCGTGCGCTGGAACTTA 60.741 61.111 16.21 0.00 41.60 2.24
892 4736 4.927782 TGGCGTGCGCTGGAACTT 62.928 61.111 16.21 0.00 41.60 2.66
994 4850 2.515991 TTTCCGGATCATGCGCCC 60.516 61.111 4.15 0.00 0.00 6.13
1326 5182 2.742372 CAGGAACCCGACAAGCCG 60.742 66.667 0.00 0.00 0.00 5.52
1413 5269 3.804786 TTGGCATGCATGTTGATAAGG 57.195 42.857 26.79 0.00 0.00 2.69
1519 5375 0.905357 AAGTCACCTCTAGCGGCATT 59.095 50.000 1.45 0.00 0.00 3.56
1629 5485 1.115930 GCTCCCTCGCCTTCTCCATA 61.116 60.000 0.00 0.00 0.00 2.74
1661 5517 1.888436 GACCACATCTGTCTCCGGCA 61.888 60.000 0.00 0.00 0.00 5.69
1888 5744 2.843401 AGCAATGCATTTCCAAGCAA 57.157 40.000 9.83 0.00 44.88 3.91
1906 5762 4.273235 TCCGCACTTTGCATACATTGATAG 59.727 41.667 0.00 0.00 45.36 2.08
1958 5814 0.336737 ATCCCTCTCCTTCGTCCTGT 59.663 55.000 0.00 0.00 0.00 4.00
2170 6026 3.492656 GCATTAGGCTCGATCTTGTACCA 60.493 47.826 0.00 0.00 40.25 3.25
2187 6043 3.364864 CGCAACTGTAGTGCTTTGCATTA 60.365 43.478 14.89 0.00 43.73 1.90
2209 6065 1.202651 ACGGCCAAGCATATCCACTAC 60.203 52.381 2.24 0.00 0.00 2.73
2385 6241 0.041839 GCACATAATCTCCGCTTGCG 60.042 55.000 8.14 8.14 0.00 4.85
2427 6283 4.520111 TCCACTTCAAACCATTCATCACAG 59.480 41.667 0.00 0.00 0.00 3.66
2444 6300 1.002134 CCCCGCAATGTCTCCACTT 60.002 57.895 0.00 0.00 0.00 3.16
2533 6389 4.387559 CACATCACAAATTCACAATGCTGG 59.612 41.667 0.00 0.00 0.00 4.85
2539 6395 5.787953 ATCCACACATCACAAATTCACAA 57.212 34.783 0.00 0.00 0.00 3.33
2540 6396 6.095300 GGATATCCACACATCACAAATTCACA 59.905 38.462 17.34 0.00 35.64 3.58
2541 6397 6.319658 AGGATATCCACACATCACAAATTCAC 59.680 38.462 23.81 0.00 38.89 3.18
2542 6398 6.425735 AGGATATCCACACATCACAAATTCA 58.574 36.000 23.81 0.00 38.89 2.57
2543 6399 6.949352 AGGATATCCACACATCACAAATTC 57.051 37.500 23.81 0.00 38.89 2.17
2544 6400 7.345691 TGTAGGATATCCACACATCACAAATT 58.654 34.615 23.81 0.21 38.89 1.82
2545 6401 6.899089 TGTAGGATATCCACACATCACAAAT 58.101 36.000 23.81 0.65 38.89 2.32
2546 6402 6.070251 ACTGTAGGATATCCACACATCACAAA 60.070 38.462 23.81 3.10 38.89 2.83
2595 6451 1.003928 TGACAAGCTGAGCATGGACAT 59.996 47.619 14.54 0.00 31.12 3.06
2625 6481 1.142870 CCTTCCACTTTCTGGTGACCA 59.857 52.381 3.40 3.40 41.52 4.02
2681 6537 8.497910 TGAATATGATTTACTCTCTAGGCCTT 57.502 34.615 12.58 0.00 0.00 4.35
2930 6791 6.183361 TGCTACCATCTTCTATATTGTGCACT 60.183 38.462 19.41 0.28 0.00 4.40
2972 6833 8.892723 TGTACTTGCTTCCTTCATGTAATAATG 58.107 33.333 0.00 0.00 0.00 1.90
3025 6891 6.102897 AGTATAAGTGTGATATCCCAGCAC 57.897 41.667 0.00 4.75 44.07 4.40
3321 7187 7.275920 CACCAATAACTTTATCAGCTACTCCT 58.724 38.462 0.00 0.00 0.00 3.69
3322 7188 6.017852 GCACCAATAACTTTATCAGCTACTCC 60.018 42.308 0.00 0.00 0.00 3.85
3323 7189 6.538742 TGCACCAATAACTTTATCAGCTACTC 59.461 38.462 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.