Multiple sequence alignment - TraesCS7D01G190400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G190400 chr7D 100.000 2834 0 0 1 2834 145905297 145908130 0.000000e+00 5234.0
1 TraesCS7D01G190400 chr7A 95.451 1319 27 11 1524 2834 146678115 146679408 0.000000e+00 2073.0
2 TraesCS7D01G190400 chr7A 91.063 1242 63 10 309 1538 146676891 146678096 0.000000e+00 1635.0
3 TraesCS7D01G190400 chr7A 90.496 242 15 6 1 242 146540510 146540743 2.120000e-81 313.0
4 TraesCS7D01G190400 chr7A 90.496 242 16 5 1 242 146590534 146590768 2.120000e-81 313.0
5 TraesCS7D01G190400 chr7A 90.083 242 17 5 1 242 146488308 146488542 9.860000e-80 307.0
6 TraesCS7D01G190400 chr7B 92.417 1121 66 9 760 1878 107974948 107976051 0.000000e+00 1581.0
7 TraesCS7D01G190400 chr7B 89.920 873 69 9 1968 2834 107976097 107976956 0.000000e+00 1107.0
8 TraesCS7D01G190400 chr7B 91.691 349 25 3 305 651 107974138 107974484 5.490000e-132 481.0
9 TraesCS7D01G190400 chr7B 86.939 245 18 10 1 242 107973759 107973992 2.170000e-66 263.0
10 TraesCS7D01G190400 chr6A 87.273 55 2 3 8 57 147205090 147205144 1.100000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G190400 chr7D 145905297 145908130 2833 False 5234 5234 100.00000 1 2834 1 chr7D.!!$F1 2833
1 TraesCS7D01G190400 chr7A 146676891 146679408 2517 False 1854 2073 93.25700 309 2834 2 chr7A.!!$F4 2525
2 TraesCS7D01G190400 chr7B 107973759 107976956 3197 False 858 1581 90.24175 1 2834 4 chr7B.!!$F1 2833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 719 0.178924 ATGAAAAAGCAGGGTGGCCT 60.179 50.0 3.32 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2483 2988 0.459585 TCTCTGGCATTTACGCGTCC 60.46 55.0 18.63 11.65 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.212279 GTTTTTCGCACGTGCATATTTC 57.788 40.909 37.03 19.87 42.21 2.17
22 23 3.544356 TTTTCGCACGTGCATATTTCA 57.456 38.095 37.03 13.28 42.21 2.69
158 161 6.528014 TGATTTCATCACAAAAATGTGCAC 57.472 33.333 10.75 10.75 39.49 4.57
160 163 2.392821 TCATCACAAAAATGTGCACGC 58.607 42.857 13.13 0.00 39.49 5.34
163 166 2.191802 TCACAAAAATGTGCACGCAAG 58.808 42.857 13.13 2.37 39.49 4.01
164 167 2.159324 TCACAAAAATGTGCACGCAAGA 60.159 40.909 13.13 0.00 39.49 3.02
165 168 2.602211 CACAAAAATGTGCACGCAAGAA 59.398 40.909 13.13 0.00 35.30 2.52
166 169 2.859538 ACAAAAATGTGCACGCAAGAAG 59.140 40.909 13.13 1.92 43.62 2.85
168 171 3.435105 AAAATGTGCACGCAAGAAGAA 57.565 38.095 13.13 0.00 43.62 2.52
169 172 3.435105 AAATGTGCACGCAAGAAGAAA 57.565 38.095 13.13 0.00 43.62 2.52
171 174 2.187351 TGTGCACGCAAGAAGAAAAC 57.813 45.000 13.13 0.00 43.62 2.43
172 175 1.742831 TGTGCACGCAAGAAGAAAACT 59.257 42.857 13.13 0.00 43.62 2.66
173 176 2.939756 TGTGCACGCAAGAAGAAAACTA 59.060 40.909 13.13 0.00 43.62 2.24
174 177 3.375610 TGTGCACGCAAGAAGAAAACTAA 59.624 39.130 13.13 0.00 43.62 2.24
175 178 3.968724 GTGCACGCAAGAAGAAAACTAAG 59.031 43.478 0.00 0.00 43.62 2.18
176 179 2.973879 GCACGCAAGAAGAAAACTAAGC 59.026 45.455 0.00 0.00 43.62 3.09
177 180 3.548014 GCACGCAAGAAGAAAACTAAGCA 60.548 43.478 0.00 0.00 43.62 3.91
178 181 4.787598 CACGCAAGAAGAAAACTAAGCAT 58.212 39.130 0.00 0.00 43.62 3.79
179 182 5.616866 GCACGCAAGAAGAAAACTAAGCATA 60.617 40.000 0.00 0.00 43.62 3.14
180 183 6.546395 CACGCAAGAAGAAAACTAAGCATAT 58.454 36.000 0.00 0.00 43.62 1.78
274 335 7.319646 TGCCCAAAACAACATCTATTTATGAC 58.680 34.615 0.00 0.00 0.00 3.06
329 417 3.489047 CGAATCAAGATCTTCTTCGGCTC 59.511 47.826 27.05 10.75 33.78 4.70
330 418 4.692228 GAATCAAGATCTTCTTCGGCTCT 58.308 43.478 4.57 0.00 33.78 4.09
348 438 0.962356 CTGCAAAACCAGAGGCCGAT 60.962 55.000 0.00 0.00 34.77 4.18
366 456 2.868583 CGATATCAGCAAGGACAACAGG 59.131 50.000 3.12 0.00 0.00 4.00
423 521 3.264193 TGCTAGTGTGGATGGACTTCATT 59.736 43.478 0.00 0.00 35.97 2.57
459 557 2.598439 GCAGAAATAATGCAGCGAGTCG 60.598 50.000 8.54 8.54 43.31 4.18
462 560 1.571919 AATAATGCAGCGAGTCGACC 58.428 50.000 18.61 2.76 0.00 4.79
515 613 1.073722 CCTTGCAGCAAGAGGACCA 59.926 57.895 32.94 0.00 43.42 4.02
519 617 2.435586 CAGCAAGAGGACCAGCGG 60.436 66.667 0.00 0.00 0.00 5.52
618 716 3.445096 CCTCTTATGAAAAAGCAGGGTGG 59.555 47.826 0.00 0.00 0.00 4.61
621 719 0.178924 ATGAAAAAGCAGGGTGGCCT 60.179 50.000 3.32 0.00 0.00 5.19
629 727 1.833934 CAGGGTGGCCTGTTGCTTT 60.834 57.895 3.32 0.00 40.92 3.51
633 731 1.398958 GGTGGCCTGTTGCTTTGGAA 61.399 55.000 3.32 0.00 40.92 3.53
643 741 3.690745 CTTTGGAAGCTGGCCTGG 58.309 61.111 12.06 1.66 0.00 4.45
653 751 1.147153 CTGGCCTGGGCTAGCTAAC 59.853 63.158 21.72 6.18 42.42 2.34
682 780 3.333219 TGAAGCCTCCCCTGCAGG 61.333 66.667 26.87 26.87 0.00 4.85
693 791 1.230635 CCCTGCAGGAACAAGACACG 61.231 60.000 34.91 9.20 38.24 4.49
721 819 0.468226 GACACAAGCCGATCCCCATA 59.532 55.000 0.00 0.00 0.00 2.74
745 1204 1.073897 GAGGCCCAGCAACAGAACT 59.926 57.895 0.00 0.00 0.00 3.01
746 1205 1.228367 AGGCCCAGCAACAGAACTG 60.228 57.895 0.00 0.00 0.00 3.16
747 1206 2.647297 GCCCAGCAACAGAACTGC 59.353 61.111 1.46 0.00 40.24 4.40
757 1216 3.415237 CAGAACTGCTCTCTGTCCG 57.585 57.895 3.06 0.00 36.38 4.79
758 1217 0.884514 CAGAACTGCTCTCTGTCCGA 59.115 55.000 0.00 0.00 36.38 4.55
759 1218 1.270826 CAGAACTGCTCTCTGTCCGAA 59.729 52.381 0.00 0.00 36.38 4.30
760 1219 1.964223 AGAACTGCTCTCTGTCCGAAA 59.036 47.619 0.00 0.00 0.00 3.46
761 1220 2.062519 GAACTGCTCTCTGTCCGAAAC 58.937 52.381 0.00 0.00 0.00 2.78
763 1222 0.241213 CTGCTCTCTGTCCGAAACGA 59.759 55.000 0.00 0.00 0.00 3.85
765 1224 1.272781 GCTCTCTGTCCGAAACGATG 58.727 55.000 0.00 0.00 0.00 3.84
766 1225 1.272781 CTCTCTGTCCGAAACGATGC 58.727 55.000 0.00 0.00 0.00 3.91
767 1226 0.601057 TCTCTGTCCGAAACGATGCA 59.399 50.000 0.00 0.00 0.00 3.96
768 1227 1.000394 TCTCTGTCCGAAACGATGCAA 60.000 47.619 0.00 0.00 0.00 4.08
769 1228 1.798223 CTCTGTCCGAAACGATGCAAA 59.202 47.619 0.00 0.00 0.00 3.68
770 1229 1.529438 TCTGTCCGAAACGATGCAAAC 59.471 47.619 0.00 0.00 0.00 2.93
771 1230 1.531149 CTGTCCGAAACGATGCAAACT 59.469 47.619 0.00 0.00 0.00 2.66
772 1231 1.262950 TGTCCGAAACGATGCAAACTG 59.737 47.619 0.00 0.00 0.00 3.16
805 1264 1.414181 CTATGTGGAGCAGGTACCAGG 59.586 57.143 15.94 6.97 36.82 4.45
810 1270 1.295423 GAGCAGGTACCAGGCGAAA 59.705 57.895 15.94 0.00 0.00 3.46
916 1376 9.298250 AGTCCGCCCATGTAAGTATATATATAG 57.702 37.037 2.53 0.00 0.00 1.31
1098 1559 1.258982 CTCATACTTCGCGTCATTGCC 59.741 52.381 5.77 0.00 0.00 4.52
1167 1628 1.301716 GCTTCCTCTGTTCACGCCA 60.302 57.895 0.00 0.00 0.00 5.69
1216 1677 2.034532 TCCCGGCTCTCACGTACA 59.965 61.111 0.00 0.00 0.00 2.90
1241 1702 4.676196 GCAGAATAATGTTTCAGTGCCTGG 60.676 45.833 2.86 0.00 31.51 4.45
1299 1761 5.531634 TGATGCTCCAACTGTTTGAATTTC 58.468 37.500 0.00 0.00 34.24 2.17
1302 1764 5.291178 TGCTCCAACTGTTTGAATTTCATG 58.709 37.500 0.00 0.00 34.24 3.07
1313 1775 6.534436 TGTTTGAATTTCATGTTGACACTTGG 59.466 34.615 0.00 0.00 0.00 3.61
1587 2082 6.538742 TGCACCAATAACTTTATCAGCTACTC 59.461 38.462 0.00 0.00 0.00 2.59
1588 2083 6.017852 GCACCAATAACTTTATCAGCTACTCC 60.018 42.308 0.00 0.00 0.00 3.85
1885 2380 6.102897 AGTATAAGTGTGATATCCCAGCAC 57.897 41.667 0.00 4.75 44.07 4.40
1938 2438 8.892723 TGTACTTGCTTCCTTCATGTAATAATG 58.107 33.333 0.00 0.00 0.00 1.90
1980 2480 6.183361 TGCTACCATCTTCTATATTGTGCACT 60.183 38.462 19.41 0.28 0.00 4.40
2229 2734 8.497910 TGAATATGATTTACTCTCTAGGCCTT 57.502 34.615 12.58 0.00 0.00 4.35
2285 2790 1.142870 CCTTCCACTTTCTGGTGACCA 59.857 52.381 3.40 3.40 41.52 4.02
2315 2820 1.003928 TGACAAGCTGAGCATGGACAT 59.996 47.619 14.54 0.00 31.12 3.06
2364 2869 6.070251 ACTGTAGGATATCCACACATCACAAA 60.070 38.462 23.81 3.10 38.89 2.83
2365 2870 6.899089 TGTAGGATATCCACACATCACAAAT 58.101 36.000 23.81 0.65 38.89 2.32
2366 2871 7.345691 TGTAGGATATCCACACATCACAAATT 58.654 34.615 23.81 0.21 38.89 1.82
2367 2872 6.949352 AGGATATCCACACATCACAAATTC 57.051 37.500 23.81 0.00 38.89 2.17
2368 2873 6.425735 AGGATATCCACACATCACAAATTCA 58.574 36.000 23.81 0.00 38.89 2.57
2369 2874 6.319658 AGGATATCCACACATCACAAATTCAC 59.680 38.462 23.81 0.00 38.89 3.18
2370 2875 6.095300 GGATATCCACACATCACAAATTCACA 59.905 38.462 17.34 0.00 35.64 3.58
2371 2876 5.787953 ATCCACACATCACAAATTCACAA 57.212 34.783 0.00 0.00 0.00 3.33
2377 2882 4.387559 CACATCACAAATTCACAATGCTGG 59.612 41.667 0.00 0.00 0.00 4.85
2466 2971 1.002134 CCCCGCAATGTCTCCACTT 60.002 57.895 0.00 0.00 0.00 3.16
2483 2988 4.520111 TCCACTTCAAACCATTCATCACAG 59.480 41.667 0.00 0.00 0.00 3.66
2525 3030 0.041839 GCACATAATCTCCGCTTGCG 60.042 55.000 8.14 8.14 0.00 4.85
2701 3206 1.202651 ACGGCCAAGCATATCCACTAC 60.203 52.381 2.24 0.00 0.00 2.73
2723 3228 3.364864 CGCAACTGTAGTGCTTTGCATTA 60.365 43.478 14.89 0.00 43.73 1.90
2740 3245 3.492656 GCATTAGGCTCGATCTTGTACCA 60.493 47.826 0.00 0.00 40.25 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 97 8.273780 AGGCAAAAATAACAAAATCAACACAA 57.726 26.923 0.00 0.00 0.00 3.33
95 98 7.856145 AGGCAAAAATAACAAAATCAACACA 57.144 28.000 0.00 0.00 0.00 3.72
147 150 3.435105 TCTTCTTGCGTGCACATTTTT 57.565 38.095 18.64 0.00 0.00 1.94
157 160 6.743575 ATATGCTTAGTTTTCTTCTTGCGT 57.256 33.333 0.00 0.00 0.00 5.24
158 161 9.722056 AATAATATGCTTAGTTTTCTTCTTGCG 57.278 29.630 0.00 0.00 0.00 4.85
169 172 9.973661 TGGGCATGTATAATAATATGCTTAGTT 57.026 29.630 0.00 0.00 43.96 2.24
174 177 9.919416 TGTATTGGGCATGTATAATAATATGCT 57.081 29.630 0.00 0.00 43.96 3.79
180 183 9.360901 ACATGTTGTATTGGGCATGTATAATAA 57.639 29.630 7.17 0.00 46.66 1.40
242 245 3.176552 TGTTGTTTTGGGCATGTCTTG 57.823 42.857 0.00 0.00 0.00 3.02
274 335 7.883217 AGCATTGCTGGAATTATAATCTCTTG 58.117 34.615 11.09 0.00 37.57 3.02
302 381 5.810587 CCGAAGAAGATCTTGATTCGGTTTA 59.189 40.000 36.12 0.00 44.74 2.01
307 386 3.452474 AGCCGAAGAAGATCTTGATTCG 58.548 45.455 28.89 28.89 36.73 3.34
326 414 1.583477 GCCTCTGGTTTTGCAGAGC 59.417 57.895 0.00 0.00 42.52 4.09
329 417 0.962356 ATCGGCCTCTGGTTTTGCAG 60.962 55.000 0.00 0.00 0.00 4.41
330 418 0.326595 TATCGGCCTCTGGTTTTGCA 59.673 50.000 0.00 0.00 0.00 4.08
344 434 2.868583 CTGTTGTCCTTGCTGATATCGG 59.131 50.000 7.22 7.22 0.00 4.18
348 438 4.072131 GTTTCCTGTTGTCCTTGCTGATA 58.928 43.478 0.00 0.00 0.00 2.15
366 456 7.214467 TGAATCCTTATGTTTGGACTGTTTC 57.786 36.000 0.00 0.00 34.90 2.78
423 521 4.406648 TTTCTGCTTCTCTGACTTGTGA 57.593 40.909 0.00 0.00 0.00 3.58
459 557 1.602771 GGGCTACCTGTTCTGGGTC 59.397 63.158 0.00 0.00 38.19 4.46
503 601 3.710722 CCCGCTGGTCCTCTTGCT 61.711 66.667 0.00 0.00 0.00 3.91
515 613 0.537371 CCAACTGAAAGAACCCCGCT 60.537 55.000 0.00 0.00 37.43 5.52
519 617 3.318275 GGTTCTTCCAACTGAAAGAACCC 59.682 47.826 23.17 10.34 44.70 4.11
640 738 0.172803 ACGTTCGTTAGCTAGCCCAG 59.827 55.000 12.13 0.61 0.00 4.45
643 741 0.171903 TGGACGTTCGTTAGCTAGCC 59.828 55.000 12.13 0.00 0.00 3.93
653 751 2.383527 GGCTTCAGCTGGACGTTCG 61.384 63.158 15.13 0.00 41.70 3.95
682 780 1.261619 CACTTGCTCCGTGTCTTGTTC 59.738 52.381 0.00 0.00 0.00 3.18
693 791 1.845809 CGGCTTGTGTCACTTGCTCC 61.846 60.000 16.23 5.81 0.00 4.70
721 819 0.469705 TGTTGCTGGGCCTCAACAAT 60.470 50.000 29.26 0.00 46.40 2.71
745 1204 0.888619 ATCGTTTCGGACAGAGAGCA 59.111 50.000 0.00 0.00 0.00 4.26
746 1205 1.272781 CATCGTTTCGGACAGAGAGC 58.727 55.000 0.00 0.00 0.00 4.09
747 1206 1.272781 GCATCGTTTCGGACAGAGAG 58.727 55.000 0.00 0.00 0.00 3.20
748 1207 0.601057 TGCATCGTTTCGGACAGAGA 59.399 50.000 0.00 0.00 0.00 3.10
749 1208 1.428448 TTGCATCGTTTCGGACAGAG 58.572 50.000 0.00 0.00 0.00 3.35
751 1210 1.531149 AGTTTGCATCGTTTCGGACAG 59.469 47.619 0.00 0.00 0.00 3.51
752 1211 1.262950 CAGTTTGCATCGTTTCGGACA 59.737 47.619 0.00 0.00 0.00 4.02
753 1212 1.399727 CCAGTTTGCATCGTTTCGGAC 60.400 52.381 0.00 0.00 0.00 4.79
754 1213 0.871722 CCAGTTTGCATCGTTTCGGA 59.128 50.000 0.00 0.00 0.00 4.55
756 1215 1.531149 AGACCAGTTTGCATCGTTTCG 59.469 47.619 0.00 0.00 0.00 3.46
757 1216 2.095718 GGAGACCAGTTTGCATCGTTTC 60.096 50.000 0.00 0.00 0.00 2.78
758 1217 1.880027 GGAGACCAGTTTGCATCGTTT 59.120 47.619 0.00 0.00 0.00 3.60
759 1218 1.202758 TGGAGACCAGTTTGCATCGTT 60.203 47.619 0.00 0.00 0.00 3.85
760 1219 0.396435 TGGAGACCAGTTTGCATCGT 59.604 50.000 0.00 0.00 0.00 3.73
761 1220 1.399440 CATGGAGACCAGTTTGCATCG 59.601 52.381 0.00 0.00 36.75 3.84
763 1222 1.355381 TCCATGGAGACCAGTTTGCAT 59.645 47.619 11.44 0.00 36.75 3.96
765 1224 1.457346 CTCCATGGAGACCAGTTTGC 58.543 55.000 34.54 0.00 44.53 3.68
766 1225 1.004044 AGCTCCATGGAGACCAGTTTG 59.996 52.381 40.29 15.88 44.53 2.93
767 1226 1.366319 AGCTCCATGGAGACCAGTTT 58.634 50.000 40.29 15.38 44.53 2.66
768 1227 2.254152 TAGCTCCATGGAGACCAGTT 57.746 50.000 40.29 20.75 44.53 3.16
769 1228 2.045524 CATAGCTCCATGGAGACCAGT 58.954 52.381 40.29 21.80 44.53 4.00
770 1229 2.045524 ACATAGCTCCATGGAGACCAG 58.954 52.381 40.29 27.69 44.53 4.00
771 1230 1.764723 CACATAGCTCCATGGAGACCA 59.235 52.381 40.29 25.15 44.53 4.02
772 1231 1.071385 CCACATAGCTCCATGGAGACC 59.929 57.143 40.29 25.30 44.53 3.85
851 1311 2.566833 TTGATGTTACAGCAGCTGGT 57.433 45.000 26.38 13.85 35.51 4.00
904 1364 6.661377 CGATGCTCCCTGCCTATATATATACT 59.339 42.308 0.00 0.00 42.00 2.12
916 1376 2.202987 CAGTCGATGCTCCCTGCC 60.203 66.667 0.00 0.00 42.00 4.85
928 1388 2.802816 CCAGGTCTGAAGAAAACAGTCG 59.197 50.000 0.00 0.00 36.81 4.18
1043 1504 2.386113 ACTCCTCTACTTACCCCCTTGT 59.614 50.000 0.00 0.00 0.00 3.16
1046 1507 2.009165 ACACTCCTCTACTTACCCCCT 58.991 52.381 0.00 0.00 0.00 4.79
1098 1559 2.887568 GCGAGGGTGCTGATGACG 60.888 66.667 0.00 0.00 0.00 4.35
1167 1628 1.683011 CGGGCCTTGAACTGGATGAAT 60.683 52.381 0.84 0.00 0.00 2.57
1216 1677 4.708421 AGGCACTGAAACATTATTCTGCAT 59.292 37.500 0.00 0.00 37.18 3.96
1299 1761 1.321474 ACCTGCCAAGTGTCAACATG 58.679 50.000 0.00 0.00 0.00 3.21
1302 1764 1.680338 AGAACCTGCCAAGTGTCAAC 58.320 50.000 0.00 0.00 0.00 3.18
1313 1775 2.617274 GCCACCACGAAGAACCTGC 61.617 63.158 0.00 0.00 0.00 4.85
1456 1918 3.503748 ACTGGCACACTTTGAATTAGAGC 59.496 43.478 0.00 0.00 0.00 4.09
1896 2391 2.104281 AGTACAAGAACCACCCTCACAC 59.896 50.000 0.00 0.00 0.00 3.82
1901 2396 1.774856 AGCAAGTACAAGAACCACCCT 59.225 47.619 0.00 0.00 0.00 4.34
1938 2438 1.065126 AGCAAGAGAATAGGCCCACAC 60.065 52.381 0.00 0.00 0.00 3.82
1980 2480 1.414919 AGAAGTAACACCGTCAAGGCA 59.585 47.619 0.00 0.00 46.52 4.75
2041 2546 9.547753 GTACAGTACTCAATCCATGACATTTAT 57.452 33.333 3.19 0.00 33.47 1.40
2064 2569 8.767478 TTACCAGCAACTACTATGAAAAGTAC 57.233 34.615 0.00 0.00 0.00 2.73
2229 2734 7.448777 CCTAATAGACAGATACCACTAGCAAGA 59.551 40.741 0.00 0.00 0.00 3.02
2285 2790 4.219070 TGCTCAGCTTGTCATTTTATGCTT 59.781 37.500 0.00 0.00 0.00 3.91
2315 2820 5.639931 TGAAATTCGATGAACGTGTGGATTA 59.360 36.000 0.00 0.00 43.13 1.75
2364 2869 3.087031 CCTGTCTTCCAGCATTGTGAAT 58.913 45.455 0.00 0.00 40.06 2.57
2365 2870 2.158623 ACCTGTCTTCCAGCATTGTGAA 60.159 45.455 0.00 0.00 40.06 3.18
2366 2871 1.421268 ACCTGTCTTCCAGCATTGTGA 59.579 47.619 0.00 0.00 40.06 3.58
2367 2872 1.901591 ACCTGTCTTCCAGCATTGTG 58.098 50.000 0.00 0.00 40.06 3.33
2368 2873 2.639839 AGTACCTGTCTTCCAGCATTGT 59.360 45.455 0.00 0.00 40.06 2.71
2369 2874 3.340814 AGTACCTGTCTTCCAGCATTG 57.659 47.619 0.00 0.00 40.06 2.82
2370 2875 4.373156 AAAGTACCTGTCTTCCAGCATT 57.627 40.909 0.00 0.00 40.06 3.56
2371 2876 4.373156 AAAAGTACCTGTCTTCCAGCAT 57.627 40.909 0.00 0.00 40.06 3.79
2377 2882 6.148976 GGTTGACCATAAAAGTACCTGTCTTC 59.851 42.308 0.00 0.00 35.64 2.87
2386 2891 3.074687 TGCCCAGGTTGACCATAAAAGTA 59.925 43.478 2.56 0.00 38.89 2.24
2388 2893 2.524306 TGCCCAGGTTGACCATAAAAG 58.476 47.619 2.56 0.00 38.89 2.27
2418 2923 4.079154 GGATGAAAGGGGGATAAGAAAGGT 60.079 45.833 0.00 0.00 0.00 3.50
2466 2971 3.073678 CGTCCTGTGATGAATGGTTTGA 58.926 45.455 0.00 0.00 0.00 2.69
2483 2988 0.459585 TCTCTGGCATTTACGCGTCC 60.460 55.000 18.63 11.65 0.00 4.79
2525 3030 8.049655 AGAGGCTTCTAAAAATGAATGAAGAC 57.950 34.615 0.00 0.00 41.60 3.01
2701 3206 3.077339 GCAAAGCACTACAGTTGCG 57.923 52.632 0.00 0.00 37.25 4.85
2723 3228 1.751924 GACTGGTACAAGATCGAGCCT 59.248 52.381 3.64 0.00 38.70 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.