Multiple sequence alignment - TraesCS7D01G190100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G190100 chr7D 100.000 8775 0 0 1 8775 144138287 144129513 0.000000e+00 16205.0
1 TraesCS7D01G190100 chr7D 78.856 402 63 14 8245 8628 55612009 55612406 1.460000e-62 252.0
2 TraesCS7D01G190100 chr7D 76.531 490 63 28 8238 8690 361160 360686 4.120000e-53 220.0
3 TraesCS7D01G190100 chr7D 83.146 178 20 5 8446 8623 15917012 15917179 4.240000e-33 154.0
4 TraesCS7D01G190100 chr7D 89.041 73 7 1 2731 2803 123457592 123457521 1.210000e-13 89.8
5 TraesCS7D01G190100 chr7D 87.500 56 5 1 6671 6726 39031923 39031870 7.350000e-06 63.9
6 TraesCS7D01G190100 chr7B 95.623 2376 84 15 2415 4781 107605873 107608237 0.000000e+00 3794.0
7 TraesCS7D01G190100 chr7B 92.826 1631 86 14 723 2333 107604255 107605874 0.000000e+00 2335.0
8 TraesCS7D01G190100 chr7B 96.033 1210 40 3 6746 7947 107610073 107611282 0.000000e+00 1962.0
9 TraesCS7D01G190100 chr7B 89.474 665 47 7 5864 6506 107609109 107609772 0.000000e+00 819.0
10 TraesCS7D01G190100 chr7B 83.616 708 56 30 9 701 107603608 107604270 2.090000e-170 610.0
11 TraesCS7D01G190100 chr7B 88.163 245 22 3 7993 8232 107613166 107613408 1.440000e-72 285.0
12 TraesCS7D01G190100 chr7B 96.610 59 1 1 4777 4834 107608979 107609037 7.250000e-16 97.1
13 TraesCS7D01G190100 chr7B 100.000 44 0 0 7958 8001 107611320 107611363 2.030000e-11 82.4
14 TraesCS7D01G190100 chr7A 94.931 2170 85 17 2415 4574 145466772 145468926 0.000000e+00 3374.0
15 TraesCS7D01G190100 chr7A 91.852 1620 90 11 730 2329 145465174 145466771 0.000000e+00 2222.0
16 TraesCS7D01G190100 chr7A 92.121 1485 50 27 6744 8162 145471232 145472715 0.000000e+00 2032.0
17 TraesCS7D01G190100 chr7A 90.967 786 63 6 4653 5430 145469231 145470016 0.000000e+00 1051.0
18 TraesCS7D01G190100 chr7A 87.050 834 68 15 5427 6232 145470079 145470900 0.000000e+00 905.0
19 TraesCS7D01G190100 chr7A 89.720 321 17 3 6289 6606 145470908 145471215 6.380000e-106 396.0
20 TraesCS7D01G190100 chr7A 80.632 475 70 10 8238 8694 59292772 59292302 1.810000e-91 348.0
21 TraesCS7D01G190100 chr7A 92.029 138 6 3 342 474 145464982 145465119 1.160000e-43 189.0
22 TraesCS7D01G190100 chr7A 93.617 94 4 1 2326 2417 3014001 3014094 1.190000e-28 139.0
23 TraesCS7D01G190100 chr7A 91.837 98 6 2 2332 2428 208050274 208050370 1.540000e-27 135.0
24 TraesCS7D01G190100 chr6A 84.265 966 144 8 6814 7775 542258117 542259078 0.000000e+00 935.0
25 TraesCS7D01G190100 chr6A 80.583 103 20 0 3290 3392 542256604 542256706 7.300000e-11 80.5
26 TraesCS7D01G190100 chr6A 95.122 41 2 0 3510 3550 542256832 542256872 2.040000e-06 65.8
27 TraesCS7D01G190100 chr6B 83.914 976 150 7 6814 7785 591580025 591580997 0.000000e+00 926.0
28 TraesCS7D01G190100 chr6B 96.512 86 3 0 2332 2417 12465847 12465762 9.180000e-30 143.0
29 TraesCS7D01G190100 chr6B 95.122 41 2 0 3510 3550 591578733 591578773 2.040000e-06 65.8
30 TraesCS7D01G190100 chr6D 83.574 968 151 8 6814 7777 395699239 395700202 0.000000e+00 900.0
31 TraesCS7D01G190100 chr6D 78.899 545 94 12 8244 8769 28286051 28285509 5.040000e-92 350.0
32 TraesCS7D01G190100 chr6D 76.681 476 84 17 8237 8692 126821033 126821501 1.140000e-58 239.0
33 TraesCS7D01G190100 chr6D 96.512 86 3 0 2332 2417 11067855 11067940 9.180000e-30 143.0
34 TraesCS7D01G190100 chr6D 95.122 41 2 0 3510 3550 395696339 395696379 2.040000e-06 65.8
35 TraesCS7D01G190100 chr6D 91.304 46 2 1 6671 6716 319682684 319682641 2.650000e-05 62.1
36 TraesCS7D01G190100 chr1B 81.450 469 64 12 8241 8691 13278112 13278575 6.480000e-96 363.0
37 TraesCS7D01G190100 chr2B 81.092 476 67 11 8238 8694 756710280 756709809 8.380000e-95 359.0
38 TraesCS7D01G190100 chrUn 80.810 469 67 14 8239 8689 393439588 393439125 6.520000e-91 346.0
39 TraesCS7D01G190100 chrUn 80.087 462 61 14 8253 8691 213719178 213719631 1.840000e-81 315.0
40 TraesCS7D01G190100 chrUn 78.526 475 80 14 8238 8694 48622799 48622329 8.620000e-75 292.0
41 TraesCS7D01G190100 chr3D 88.208 212 14 5 8238 8446 584893309 584893106 8.800000e-60 243.0
42 TraesCS7D01G190100 chr3D 92.157 102 7 1 2318 2418 129677990 129678091 9.180000e-30 143.0
43 TraesCS7D01G190100 chr2D 95.652 92 3 1 2332 2423 404795834 404795924 7.100000e-31 147.0
44 TraesCS7D01G190100 chr5B 73.031 508 97 27 8287 8772 43451104 43451593 9.180000e-30 143.0
45 TraesCS7D01G190100 chr5B 100.000 29 0 0 6671 6699 693914534 693914562 4.000000e-03 54.7
46 TraesCS7D01G190100 chr4A 95.506 89 4 0 2329 2417 644038467 644038555 9.180000e-30 143.0
47 TraesCS7D01G190100 chr4A 95.506 89 4 0 2329 2417 644075070 644075158 9.180000e-30 143.0
48 TraesCS7D01G190100 chr3B 91.837 98 6 2 2332 2429 693084093 693083998 1.540000e-27 135.0
49 TraesCS7D01G190100 chr3B 93.478 46 1 1 6671 6716 716426719 716426676 5.690000e-07 67.6
50 TraesCS7D01G190100 chr3B 93.478 46 1 1 6671 6716 716458848 716458805 5.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G190100 chr7D 144129513 144138287 8774 True 16205.000000 16205 100.000000 1 8775 1 chr7D.!!$R4 8774
1 TraesCS7D01G190100 chr7B 107603608 107613408 9800 False 1248.062500 3794 92.793125 9 8232 8 chr7B.!!$F1 8223
2 TraesCS7D01G190100 chr7A 145464982 145472715 7733 False 1452.714286 3374 91.238571 342 8162 7 chr7A.!!$F3 7820
3 TraesCS7D01G190100 chr6A 542256604 542259078 2474 False 360.433333 935 86.656667 3290 7775 3 chr6A.!!$F1 4485
4 TraesCS7D01G190100 chr6B 591578733 591580997 2264 False 495.900000 926 89.518000 3510 7785 2 chr6B.!!$F1 4275
5 TraesCS7D01G190100 chr6D 395696339 395700202 3863 False 482.900000 900 89.348000 3510 7777 2 chr6D.!!$F3 4267
6 TraesCS7D01G190100 chr6D 28285509 28286051 542 True 350.000000 350 78.899000 8244 8769 1 chr6D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.106419 TCCAGGACCACCAAACAACC 60.106 55.0 0.00 0.00 38.94 3.77 F
1750 1797 0.038067 TCGTCCGGCTCAAATTTCGA 60.038 50.0 0.00 0.00 0.00 3.71 F
2503 2552 0.537143 CAAGTGGTGGTTAGCAGCCA 60.537 55.0 11.10 6.41 34.49 4.75 F
3783 4323 0.389817 TCCATGTTCTCTTCACCGCG 60.390 55.0 0.00 0.00 0.00 6.46 F
4606 5151 0.179020 ATGTGTGTGTCTGTGTGGGG 60.179 55.0 0.00 0.00 0.00 4.96 F
5423 7156 0.037590 CCCTTGGGTCATCGGTTCAA 59.962 55.0 0.00 0.00 0.00 2.69 F
5822 7632 0.101219 GCCTCCGACATTGCCAATTC 59.899 55.0 0.00 0.00 0.00 2.17 F
6336 8261 0.512952 CCTTCGGACAAGAAGTTGCG 59.487 55.0 6.07 0.00 44.46 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 1846 0.035458 CCGCACCCTTCTTCAGTTCT 59.965 55.0 0.0 0.0 0.00 3.01 R
2833 2883 0.174845 TGATGGCTCTAACCGAACCG 59.825 55.0 0.0 0.0 30.10 4.44 R
4364 4907 2.922740 TAGACGGGAATACAATGCCC 57.077 50.0 0.0 0.0 38.53 5.36 R
5130 6863 0.037046 GGCTCCCCAACTTGCAATTG 60.037 55.0 0.0 0.0 0.00 2.32 R
5655 7465 0.037447 AAAACCTGGCTCTGGCTCTC 59.963 55.0 0.0 0.0 38.73 3.20 R
6676 8933 0.039527 GGTGCTTAAACTTGCCACGG 60.040 55.0 0.0 0.0 0.00 4.94 R
6677 8934 0.665835 TGGTGCTTAAACTTGCCACG 59.334 50.0 0.0 0.0 0.00 4.94 R
8250 12494 0.034896 ATATACAGCGGGGCGAAAGG 59.965 55.0 0.0 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.370126 GCATCTCGAACATTATAAACATTACAC 57.630 33.333 0.00 0.00 0.00 2.90
42 43 2.030027 ACACTGAGATTCCAGGACCA 57.970 50.000 0.00 0.00 38.44 4.02
44 45 1.065854 CACTGAGATTCCAGGACCACC 60.066 57.143 0.00 0.00 38.44 4.61
47 48 2.040278 CTGAGATTCCAGGACCACCAAA 59.960 50.000 0.00 0.00 38.94 3.28
48 49 2.224769 TGAGATTCCAGGACCACCAAAC 60.225 50.000 0.00 0.00 38.94 2.93
50 51 2.176798 AGATTCCAGGACCACCAAACAA 59.823 45.455 0.00 0.00 38.94 2.83
52 53 0.106419 TCCAGGACCACCAAACAACC 60.106 55.000 0.00 0.00 38.94 3.77
54 55 0.396417 CAGGACCACCAAACAACCCA 60.396 55.000 0.00 0.00 38.94 4.51
55 56 0.396556 AGGACCACCAAACAACCCAC 60.397 55.000 0.00 0.00 38.94 4.61
56 57 0.396556 GGACCACCAAACAACCCACT 60.397 55.000 0.00 0.00 35.97 4.00
57 58 1.133730 GGACCACCAAACAACCCACTA 60.134 52.381 0.00 0.00 35.97 2.74
58 59 1.951602 GACCACCAAACAACCCACTAC 59.048 52.381 0.00 0.00 0.00 2.73
59 60 1.567175 ACCACCAAACAACCCACTACT 59.433 47.619 0.00 0.00 0.00 2.57
60 61 1.953686 CCACCAAACAACCCACTACTG 59.046 52.381 0.00 0.00 0.00 2.74
61 62 1.336755 CACCAAACAACCCACTACTGC 59.663 52.381 0.00 0.00 0.00 4.40
62 63 0.958822 CCAAACAACCCACTACTGCC 59.041 55.000 0.00 0.00 0.00 4.85
64 65 1.170290 AAACAACCCACTACTGCCGC 61.170 55.000 0.00 0.00 0.00 6.53
65 66 3.118454 CAACCCACTACTGCCGCG 61.118 66.667 0.00 0.00 0.00 6.46
68 69 2.047655 CCCACTACTGCCGCGAAA 60.048 61.111 8.23 0.00 0.00 3.46
69 70 1.669760 CCCACTACTGCCGCGAAAA 60.670 57.895 8.23 0.00 0.00 2.29
70 71 1.635663 CCCACTACTGCCGCGAAAAG 61.636 60.000 8.23 4.15 0.00 2.27
75 76 2.223377 ACTACTGCCGCGAAAAGAAAAG 59.777 45.455 8.23 5.48 0.00 2.27
89 90 5.948992 AAAGAAAAGGATTCGGAAGACAG 57.051 39.130 0.00 0.00 41.84 3.51
91 92 5.228945 AGAAAAGGATTCGGAAGACAGAA 57.771 39.130 0.00 0.00 41.84 3.02
92 93 5.621193 AGAAAAGGATTCGGAAGACAGAAA 58.379 37.500 0.00 0.00 41.84 2.52
99 100 6.055588 GGATTCGGAAGACAGAAATTATCCA 58.944 40.000 0.00 0.00 41.84 3.41
153 154 0.517316 GCGCTAAACAACCTGGACAG 59.483 55.000 0.00 0.00 0.00 3.51
159 160 1.972872 AACAACCTGGACAGCAGAAG 58.027 50.000 0.00 0.00 0.00 2.85
202 203 0.514691 CCGCAGCAAGAAGACAAGTC 59.485 55.000 0.00 0.00 0.00 3.01
216 217 2.726760 GACAAGTCGTCACATGTCAGAC 59.273 50.000 13.86 13.86 46.25 3.51
255 257 2.975851 CAAACTGCAATGCTTCTCGTTC 59.024 45.455 6.82 0.00 0.00 3.95
266 268 2.547826 CTTCTCGTTCGGTTTATCCCC 58.452 52.381 0.00 0.00 0.00 4.81
268 270 3.017048 TCTCGTTCGGTTTATCCCCTA 57.983 47.619 0.00 0.00 0.00 3.53
269 271 2.954318 TCTCGTTCGGTTTATCCCCTAG 59.046 50.000 0.00 0.00 0.00 3.02
270 272 1.410153 TCGTTCGGTTTATCCCCTAGC 59.590 52.381 0.00 0.00 0.00 3.42
275 277 0.179468 GGTTTATCCCCTAGCACGCA 59.821 55.000 0.00 0.00 0.00 5.24
294 296 4.759096 GAACGCATGTGCCGCACC 62.759 66.667 20.67 4.68 37.91 5.01
360 368 2.863137 GCAGTTGCAGTGCTCTATCTAC 59.137 50.000 17.60 3.35 41.22 2.59
363 373 5.737349 GCAGTTGCAGTGCTCTATCTACATA 60.737 44.000 17.60 0.00 41.22 2.29
367 377 6.183309 TGCAGTGCTCTATCTACATATACG 57.817 41.667 17.60 0.00 0.00 3.06
438 451 2.948979 TCTTCACGTGGATTTTGCAACT 59.051 40.909 17.00 0.00 0.00 3.16
472 485 2.915659 TCACCACGGACGCTTCCT 60.916 61.111 7.75 0.00 40.23 3.36
481 494 0.603569 GGACGCTTCCTCTCTGACAA 59.396 55.000 1.07 0.00 39.13 3.18
486 499 1.943507 GCTTCCTCTCTGACAACTGGC 60.944 57.143 0.00 0.00 0.00 4.85
490 503 2.046892 CTCTGACAACTGGCCCCG 60.047 66.667 0.00 0.00 0.00 5.73
491 504 2.847234 TCTGACAACTGGCCCCGT 60.847 61.111 0.00 0.00 0.00 5.28
492 505 2.669569 CTGACAACTGGCCCCGTG 60.670 66.667 0.00 0.00 0.00 4.94
493 506 4.263572 TGACAACTGGCCCCGTGG 62.264 66.667 0.00 0.00 0.00 4.94
531 545 3.680786 GCCCCTTGCGAAACCCAC 61.681 66.667 0.00 0.00 0.00 4.61
550 564 2.126424 GCTCGTCCGTTCGCTTCT 60.126 61.111 0.00 0.00 0.00 2.85
553 567 0.725686 CTCGTCCGTTCGCTTCTCTA 59.274 55.000 0.00 0.00 0.00 2.43
856 882 4.016706 CTTCGGCCTGACCCCGTT 62.017 66.667 0.00 0.00 45.71 4.44
864 890 0.671472 CCTGACCCCGTTCGTTTACC 60.671 60.000 0.00 0.00 0.00 2.85
905 931 3.957586 CAGTCCAGCCCACTGCCA 61.958 66.667 0.00 0.00 43.02 4.92
906 932 3.958860 AGTCCAGCCCACTGCCAC 61.959 66.667 0.00 0.00 43.02 5.01
917 946 4.135153 CTGCCACCGCGCTACTCT 62.135 66.667 5.56 0.00 38.08 3.24
986 1021 2.493030 CCGCGAACCGTACCATCT 59.507 61.111 8.23 0.00 34.38 2.90
1356 1403 5.568296 TGTTTATTTATACAAAACGCACGCC 59.432 36.000 0.00 0.00 36.19 5.68
1588 1635 1.444553 CGTCGACCCAGAACAGAGC 60.445 63.158 10.58 0.00 0.00 4.09
1648 1695 2.355244 GACGAGCATAGCCGAGGC 60.355 66.667 5.89 5.89 42.33 4.70
1685 1732 1.336125 GCAGCTACCATTTCCATCAGC 59.664 52.381 0.00 0.00 0.00 4.26
1715 1762 2.584391 GGAGTCCGTTGTCCCAGCT 61.584 63.158 0.00 0.00 0.00 4.24
1722 1769 0.318441 CGTTGTCCCAGCTGAGAAGA 59.682 55.000 17.39 3.31 0.00 2.87
1750 1797 0.038067 TCGTCCGGCTCAAATTTCGA 60.038 50.000 0.00 0.00 0.00 3.71
1752 1799 1.439679 GTCCGGCTCAAATTTCGAGT 58.560 50.000 14.83 0.00 32.83 4.18
1798 1845 1.299850 CTGTCAGCGACGTGGAACA 60.300 57.895 0.11 1.38 35.74 3.18
1799 1846 0.874175 CTGTCAGCGACGTGGAACAA 60.874 55.000 0.11 0.00 44.16 2.83
1821 1868 1.738099 CTGAAGAAGGGTGCGGTCG 60.738 63.158 0.00 0.00 0.00 4.79
1841 1888 2.096713 CGTTGTCGAAGAAGCTCCAAAG 60.097 50.000 0.00 0.00 39.69 2.77
1895 1942 4.807643 GCTGTACAAGAAGACCTTTGGGAT 60.808 45.833 0.00 0.00 36.25 3.85
1955 2002 2.592861 GATGATGGCCGGGCTGTC 60.593 66.667 29.87 24.95 0.00 3.51
1997 2044 1.798813 GAACACCACCAGAATCACGAC 59.201 52.381 0.00 0.00 0.00 4.34
2051 2098 2.807045 GTCGTCGTGGCTGCTGAG 60.807 66.667 0.00 0.00 0.00 3.35
2105 2152 3.825908 ACCTCTTCAGTCTCTCTTCCT 57.174 47.619 0.00 0.00 0.00 3.36
2169 2218 2.183478 TGTGTTGCATAGGTGGTCTG 57.817 50.000 0.00 0.00 0.00 3.51
2235 2284 5.419788 AGGACATCGTGTTATGGTACTACAA 59.580 40.000 0.00 0.00 0.00 2.41
2256 2305 6.507023 ACAAGCTTTCATTTAACTCTGTTGG 58.493 36.000 0.00 0.00 0.00 3.77
2325 2374 5.126061 AGTGCAAGACATGAAAGTGTTCTTT 59.874 36.000 0.00 0.00 45.24 2.52
2329 2378 6.020360 GCAAGACATGAAAGTGTTCTTTTGTC 60.020 38.462 0.00 13.22 43.92 3.18
2331 2380 7.338800 AGACATGAAAGTGTTCTTTTGTCAT 57.661 32.000 18.82 7.55 44.87 3.06
2332 2381 8.450578 AGACATGAAAGTGTTCTTTTGTCATA 57.549 30.769 18.82 0.00 44.87 2.15
2333 2382 8.345565 AGACATGAAAGTGTTCTTTTGTCATAC 58.654 33.333 18.82 7.87 44.87 2.39
2334 2383 8.225603 ACATGAAAGTGTTCTTTTGTCATACT 57.774 30.769 0.00 0.00 42.99 2.12
2335 2384 8.345565 ACATGAAAGTGTTCTTTTGTCATACTC 58.654 33.333 0.00 0.00 42.99 2.59
2336 2385 7.259290 TGAAAGTGTTCTTTTGTCATACTCC 57.741 36.000 0.00 0.00 42.99 3.85
2337 2386 6.262273 TGAAAGTGTTCTTTTGTCATACTCCC 59.738 38.462 0.00 0.00 42.99 4.30
2338 2387 5.568620 AGTGTTCTTTTGTCATACTCCCT 57.431 39.130 0.00 0.00 0.00 4.20
2339 2388 5.552178 AGTGTTCTTTTGTCATACTCCCTC 58.448 41.667 0.00 0.00 0.00 4.30
2340 2389 4.695928 GTGTTCTTTTGTCATACTCCCTCC 59.304 45.833 0.00 0.00 0.00 4.30
2341 2390 3.887621 TCTTTTGTCATACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
2342 2391 3.170717 TCTTTTGTCATACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
2343 2392 4.346730 TCTTTTGTCATACTCCCTCCGTA 58.653 43.478 0.00 0.00 0.00 4.02
2344 2393 4.773674 TCTTTTGTCATACTCCCTCCGTAA 59.226 41.667 0.00 0.00 0.00 3.18
2345 2394 5.246656 TCTTTTGTCATACTCCCTCCGTAAA 59.753 40.000 0.00 0.00 0.00 2.01
2346 2395 5.687166 TTTGTCATACTCCCTCCGTAAAT 57.313 39.130 0.00 0.00 0.00 1.40
2347 2396 5.687166 TTGTCATACTCCCTCCGTAAATT 57.313 39.130 0.00 0.00 0.00 1.82
2348 2397 6.795144 TTGTCATACTCCCTCCGTAAATTA 57.205 37.500 0.00 0.00 0.00 1.40
2349 2398 6.795144 TGTCATACTCCCTCCGTAAATTAA 57.205 37.500 0.00 0.00 0.00 1.40
2350 2399 7.369551 TGTCATACTCCCTCCGTAAATTAAT 57.630 36.000 0.00 0.00 0.00 1.40
2351 2400 8.481492 TGTCATACTCCCTCCGTAAATTAATA 57.519 34.615 0.00 0.00 0.00 0.98
2352 2401 9.096823 TGTCATACTCCCTCCGTAAATTAATAT 57.903 33.333 0.00 0.00 0.00 1.28
2358 2407 8.312564 ACTCCCTCCGTAAATTAATATAAGAGC 58.687 37.037 0.00 0.00 0.00 4.09
2359 2408 7.318141 TCCCTCCGTAAATTAATATAAGAGCG 58.682 38.462 0.00 0.00 0.00 5.03
2360 2409 7.039504 TCCCTCCGTAAATTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
2361 2410 7.601508 CCCTCCGTAAATTAATATAAGAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
2362 2411 8.985805 CCTCCGTAAATTAATATAAGAGCGTTT 58.014 33.333 0.00 0.00 0.00 3.60
2379 2428 9.570488 AAGAGCGTTTAGATTACTACTTTAGTG 57.430 33.333 0.00 0.00 39.81 2.74
2380 2429 8.954350 AGAGCGTTTAGATTACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.81 3.41
2381 2430 9.733219 GAGCGTTTAGATTACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.81 3.06
2382 2431 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
2390 2439 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
2391 2440 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2392 2441 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2393 2442 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2394 2443 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2395 2444 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2397 2446 9.953697 ACTTTAGTGATCTAAACGCTCTTATAG 57.046 33.333 0.00 0.00 40.05 1.31
2398 2447 9.953697 CTTTAGTGATCTAAACGCTCTTATAGT 57.046 33.333 0.00 0.00 40.05 2.12
2401 2450 8.680039 AGTGATCTAAACGCTCTTATAGTAGT 57.320 34.615 0.00 0.00 0.00 2.73
2402 2451 9.122779 AGTGATCTAAACGCTCTTATAGTAGTT 57.877 33.333 0.00 0.00 32.23 2.24
2403 2452 9.733219 GTGATCTAAACGCTCTTATAGTAGTTT 57.267 33.333 0.00 0.00 39.62 2.66
2409 2458 8.908172 AAACGCTCTTATAGTAGTTTACAGAC 57.092 34.615 0.00 0.00 36.84 3.51
2410 2459 6.713520 ACGCTCTTATAGTAGTTTACAGACG 58.286 40.000 0.00 0.00 0.00 4.18
2411 2460 6.134730 CGCTCTTATAGTAGTTTACAGACGG 58.865 44.000 0.00 0.00 0.00 4.79
2412 2461 6.018425 CGCTCTTATAGTAGTTTACAGACGGA 60.018 42.308 0.00 0.00 0.00 4.69
2413 2462 7.354257 GCTCTTATAGTAGTTTACAGACGGAG 58.646 42.308 0.00 0.00 0.00 4.63
2453 2502 0.984230 CCTGGAGGTTAGGTTGCTGA 59.016 55.000 0.00 0.00 0.00 4.26
2467 2516 3.036429 GCTGAGGCCTACTGGGTGG 62.036 68.421 4.42 0.00 37.43 4.61
2484 2533 1.229082 GGGGGAGGGGGTTTGAAAC 60.229 63.158 0.00 0.00 0.00 2.78
2501 2550 1.318576 AACAAGTGGTGGTTAGCAGC 58.681 50.000 6.66 6.66 34.49 5.25
2503 2552 0.537143 CAAGTGGTGGTTAGCAGCCA 60.537 55.000 11.10 6.41 34.49 4.75
2534 2583 2.551270 AGAAGGAGGCTGATAACCACA 58.449 47.619 0.00 0.00 0.00 4.17
2583 2633 2.030401 CGATCGACCGTTTTGCCCA 61.030 57.895 10.26 0.00 0.00 5.36
2589 2639 2.051703 CCGTTTTGCCCAACGTCG 60.052 61.111 14.37 0.00 46.64 5.12
2634 2684 8.529424 TCCGAATAAGTAGTTCCTATCTTCAA 57.471 34.615 0.00 0.00 0.00 2.69
2676 2726 2.033492 GCGCCCGTGTGTGTATTTATAC 60.033 50.000 0.00 0.00 0.00 1.47
2717 2767 5.793030 TCAACATTTCCGGTTAATGGTTT 57.207 34.783 25.19 14.71 37.32 3.27
2775 2825 9.764363 GTAGATGTTTGTAATGTAGATGATGGA 57.236 33.333 0.00 0.00 0.00 3.41
2791 2841 8.315391 AGATGATGGATAAATGTATGTTGTCG 57.685 34.615 0.00 0.00 0.00 4.35
2815 2865 6.518395 CGAGCTTTCATTTCAATGCAATTTTG 59.482 34.615 0.00 0.00 31.22 2.44
2831 2881 5.578336 GCAATTTTGATTGGGAGCTAGTTTC 59.422 40.000 0.00 0.00 32.43 2.78
2833 2883 2.024176 TGATTGGGAGCTAGTTTCGC 57.976 50.000 0.00 6.53 0.00 4.70
2969 3020 9.220767 AGTAAAGAGTAAACTATTTTCTGCAGG 57.779 33.333 15.13 0.00 38.26 4.85
3074 3125 5.425217 TCATGGACTTGGCTAGACTTTGATA 59.575 40.000 2.20 0.00 0.00 2.15
3223 3274 4.236935 ACAGGTAAGCAAAAATGCAATCG 58.763 39.130 3.41 0.00 37.25 3.34
3241 3292 3.154827 TCGAAGGGGAGCTGAAATTTT 57.845 42.857 0.00 0.00 0.00 1.82
3243 3294 4.855340 TCGAAGGGGAGCTGAAATTTTAT 58.145 39.130 0.00 0.00 0.00 1.40
3250 3301 6.612863 AGGGGAGCTGAAATTTTATTGCTTAT 59.387 34.615 0.00 0.00 0.00 1.73
3252 3303 7.225341 GGGGAGCTGAAATTTTATTGCTTATTG 59.775 37.037 0.00 0.00 0.00 1.90
3543 3602 2.203337 TTCTGCAAGGCCGCTGTT 60.203 55.556 9.33 0.00 33.05 3.16
3619 3687 8.611757 GTGTATGCATGTATTTCAACAGATACA 58.388 33.333 10.16 0.00 41.46 2.29
3782 4322 1.808411 TTCCATGTTCTCTTCACCGC 58.192 50.000 0.00 0.00 0.00 5.68
3783 4323 0.389817 TCCATGTTCTCTTCACCGCG 60.390 55.000 0.00 0.00 0.00 6.46
3784 4324 0.389817 CCATGTTCTCTTCACCGCGA 60.390 55.000 8.23 0.00 0.00 5.87
4293 4835 7.950496 GCTTACAGTTGTAGACTATGAAAAACG 59.050 37.037 0.00 0.00 36.65 3.60
4319 4862 2.008752 AAAACTTGCTGTTGTGTGCC 57.991 45.000 0.00 0.00 39.13 5.01
4352 4895 6.674760 GCATTTTCCGTATGTAGGAGTCAAAC 60.675 42.308 0.00 0.00 39.22 2.93
4364 4907 2.159627 GGAGTCAAACGTTGCCTATGTG 59.840 50.000 0.00 0.00 0.00 3.21
4434 4977 1.282157 GGGCCCACACACTCTCTATTT 59.718 52.381 19.95 0.00 0.00 1.40
4554 5098 1.078708 GTAGCCAGCACGCCCTAAA 60.079 57.895 0.00 0.00 0.00 1.85
4597 5142 4.749598 TCATGTCTTGTGTATGTGTGTGTC 59.250 41.667 0.00 0.00 0.00 3.67
4598 5143 4.400529 TGTCTTGTGTATGTGTGTGTCT 57.599 40.909 0.00 0.00 0.00 3.41
4600 5145 4.119862 GTCTTGTGTATGTGTGTGTCTGT 58.880 43.478 0.00 0.00 0.00 3.41
4601 5146 4.025730 GTCTTGTGTATGTGTGTGTCTGTG 60.026 45.833 0.00 0.00 0.00 3.66
4602 5147 3.535280 TGTGTATGTGTGTGTCTGTGT 57.465 42.857 0.00 0.00 0.00 3.72
4603 5148 3.194062 TGTGTATGTGTGTGTCTGTGTG 58.806 45.455 0.00 0.00 0.00 3.82
4604 5149 2.543848 GTGTATGTGTGTGTCTGTGTGG 59.456 50.000 0.00 0.00 0.00 4.17
4605 5150 2.143122 GTATGTGTGTGTCTGTGTGGG 58.857 52.381 0.00 0.00 0.00 4.61
4606 5151 0.179020 ATGTGTGTGTCTGTGTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
4787 6515 3.253188 ACACACAAAATCCTCAACATCCG 59.747 43.478 0.00 0.00 0.00 4.18
4834 6563 1.072648 CTTTCCCCTCGTACCCAAACA 59.927 52.381 0.00 0.00 0.00 2.83
4892 6621 2.659897 GCCTGCGTCGCCTCATAG 60.660 66.667 15.88 4.55 0.00 2.23
4893 6622 3.120105 CCTGCGTCGCCTCATAGA 58.880 61.111 15.88 0.00 0.00 1.98
4897 6626 2.336809 CGTCGCCTCATAGAGCCC 59.663 66.667 0.00 0.00 0.00 5.19
4925 6654 2.233271 CCGGACCGTTATAGAAGCCTA 58.767 52.381 13.94 0.00 0.00 3.93
4972 6702 4.174383 CATCCTCCTCTTTCCCCATAGAT 58.826 47.826 0.00 0.00 0.00 1.98
5007 6737 3.748989 GCAAACCAACTTCTCCTCTCCTT 60.749 47.826 0.00 0.00 0.00 3.36
5010 6740 3.169908 ACCAACTTCTCCTCTCCTTCTC 58.830 50.000 0.00 0.00 0.00 2.87
5012 6742 2.499693 CAACTTCTCCTCTCCTTCTCCC 59.500 54.545 0.00 0.00 0.00 4.30
5013 6743 1.719378 ACTTCTCCTCTCCTTCTCCCA 59.281 52.381 0.00 0.00 0.00 4.37
5026 6759 1.376037 CTCCCACTCTGGCCGTTTC 60.376 63.158 0.00 0.00 35.79 2.78
5121 6854 3.182152 TCCTCTAAGCCTAGCACCTTTT 58.818 45.455 0.00 0.00 0.00 2.27
5130 6863 0.696501 TAGCACCTTTTCCCCTCACC 59.303 55.000 0.00 0.00 0.00 4.02
5167 6900 3.955101 CCTCGCGAGCTCCCTACG 61.955 72.222 30.49 10.45 0.00 3.51
5169 6902 3.170810 CTCGCGAGCTCCCTACGTC 62.171 68.421 25.07 0.00 0.00 4.34
5173 6906 2.829458 GAGCTCCCTACGTCGGCT 60.829 66.667 0.87 0.58 35.86 5.52
5175 6908 4.874977 GCTCCCTACGTCGGCTGC 62.875 72.222 0.00 3.35 0.00 5.25
5179 6912 2.261671 CCTACGTCGGCTGCAGTT 59.738 61.111 16.64 0.00 0.00 3.16
5199 6932 2.659016 CTGCCGCCTCAACTCTGA 59.341 61.111 0.00 0.00 0.00 3.27
5256 6989 1.677552 GACCTCCCATTCCACACGT 59.322 57.895 0.00 0.00 0.00 4.49
5289 7022 1.381522 TCACCGCATGTTCATCCATG 58.618 50.000 0.00 0.00 44.07 3.66
5290 7023 1.097232 CACCGCATGTTCATCCATGT 58.903 50.000 0.00 0.00 43.33 3.21
5311 7044 5.977635 TGTGAACCGAATCATCATAGAACT 58.022 37.500 0.00 0.00 0.00 3.01
5315 7048 7.491372 GTGAACCGAATCATCATAGAACTAACA 59.509 37.037 0.00 0.00 0.00 2.41
5318 7051 5.402568 CCGAATCATCATAGAACTAACACCG 59.597 44.000 0.00 0.00 0.00 4.94
5336 7069 2.491022 GGAGAGGTCATCCCGACGG 61.491 68.421 6.99 6.99 46.42 4.79
5357 7090 2.186076 CGTCGCACTGTTCCTCTATTC 58.814 52.381 0.00 0.00 0.00 1.75
5412 7145 4.384868 CGGACTTATTTGTATCCCTTGGGT 60.385 45.833 5.51 0.00 0.00 4.51
5413 7146 5.131067 GGACTTATTTGTATCCCTTGGGTC 58.869 45.833 5.51 0.00 0.00 4.46
5414 7147 5.339695 GGACTTATTTGTATCCCTTGGGTCA 60.340 44.000 5.51 1.87 0.00 4.02
5416 7149 6.365520 ACTTATTTGTATCCCTTGGGTCATC 58.634 40.000 5.51 0.00 0.00 2.92
5417 7150 3.275617 TTTGTATCCCTTGGGTCATCG 57.724 47.619 5.51 0.00 0.00 3.84
5419 7152 1.129058 GTATCCCTTGGGTCATCGGT 58.871 55.000 5.51 0.00 0.00 4.69
5420 7153 1.489230 GTATCCCTTGGGTCATCGGTT 59.511 52.381 5.51 0.00 0.00 4.44
5421 7154 0.546598 ATCCCTTGGGTCATCGGTTC 59.453 55.000 5.51 0.00 0.00 3.62
5423 7156 0.037590 CCCTTGGGTCATCGGTTCAA 59.962 55.000 0.00 0.00 0.00 2.69
5425 7158 1.745087 CCTTGGGTCATCGGTTCAATG 59.255 52.381 0.00 0.00 0.00 2.82
5433 7234 4.261197 GGTCATCGGTTCAATGGCTATTTC 60.261 45.833 0.00 0.00 0.00 2.17
5442 7243 6.405176 GGTTCAATGGCTATTTCTTTCTCCTG 60.405 42.308 0.00 0.00 0.00 3.86
5449 7250 6.045955 GGCTATTTCTTTCTCCTGTCTACTG 58.954 44.000 0.00 0.00 0.00 2.74
5484 7285 0.605589 ACGCCACACTAAGCCCTTTC 60.606 55.000 0.00 0.00 0.00 2.62
5486 7287 1.882352 CGCCACACTAAGCCCTTTCTT 60.882 52.381 0.00 0.00 0.00 2.52
5491 7292 3.753797 CACACTAAGCCCTTTCTTTCTCC 59.246 47.826 0.00 0.00 0.00 3.71
5493 7294 4.844655 ACACTAAGCCCTTTCTTTCTCCTA 59.155 41.667 0.00 0.00 0.00 2.94
5496 7297 1.916874 AGCCCTTTCTTTCTCCTACCC 59.083 52.381 0.00 0.00 0.00 3.69
5498 7299 1.907255 CCCTTTCTTTCTCCTACCCGT 59.093 52.381 0.00 0.00 0.00 5.28
5559 7360 0.467844 ACATGAGCTTGTTGGTGCCA 60.468 50.000 0.00 0.00 0.00 4.92
5563 7364 2.117941 GAGCTTGTTGGTGCCACGTC 62.118 60.000 0.00 0.00 0.00 4.34
5575 7376 3.049674 CACGTCGGCAAGCCATGT 61.050 61.111 12.19 7.16 35.37 3.21
5600 7401 3.249080 GCAGTCTTAACGGCTACAAACAA 59.751 43.478 0.00 0.00 42.50 2.83
5601 7402 4.769215 CAGTCTTAACGGCTACAAACAAC 58.231 43.478 0.00 0.00 0.00 3.32
5616 7417 2.004583 ACAACGGATATGGTGTCACG 57.995 50.000 0.00 0.00 0.00 4.35
5640 7450 2.095919 AGCGTTTACGAATGGAAAGTGC 60.096 45.455 6.44 0.00 43.02 4.40
5642 7452 3.669557 GCGTTTACGAATGGAAAGTGCAT 60.670 43.478 6.44 0.00 43.02 3.96
5643 7453 4.088648 CGTTTACGAATGGAAAGTGCATC 58.911 43.478 0.00 0.00 43.02 3.91
5647 7457 4.882671 ACGAATGGAAAGTGCATCATAC 57.117 40.909 0.00 0.00 0.00 2.39
5648 7458 4.517285 ACGAATGGAAAGTGCATCATACT 58.483 39.130 0.00 0.00 0.00 2.12
5649 7459 4.333649 ACGAATGGAAAGTGCATCATACTG 59.666 41.667 0.00 0.00 0.00 2.74
5650 7460 4.604976 GAATGGAAAGTGCATCATACTGC 58.395 43.478 0.00 0.00 42.62 4.40
5687 7497 2.935849 CCAGGTTTTTGCACCAGTTTTC 59.064 45.455 0.00 0.00 39.62 2.29
5694 7504 6.315144 GGTTTTTGCACCAGTTTTCTGTATTT 59.685 34.615 0.00 0.00 45.68 1.40
5709 7519 4.935205 TCTGTATTTTACAACTGCGAGCAT 59.065 37.500 0.00 0.00 38.38 3.79
5722 7532 3.855858 TGCGAGCATCAAAGTGTACATA 58.144 40.909 0.00 0.00 33.17 2.29
5723 7533 4.441792 TGCGAGCATCAAAGTGTACATAT 58.558 39.130 0.00 0.00 33.17 1.78
5742 7552 1.686355 TGCCGAACCAAAGTGAACAT 58.314 45.000 0.00 0.00 0.00 2.71
5765 7575 3.503748 GGTGAGTCCATTCTTTTCTGGTG 59.496 47.826 0.00 0.00 35.97 4.17
5768 7578 1.200020 GTCCATTCTTTTCTGGTGCGG 59.800 52.381 0.00 0.00 34.03 5.69
5802 7612 5.717119 AAGACACCCCAATAGAAGCTATT 57.283 39.130 0.00 0.00 0.00 1.73
5803 7613 5.041191 AGACACCCCAATAGAAGCTATTG 57.959 43.478 16.45 16.45 35.34 1.90
5808 7618 3.416156 CCCAATAGAAGCTATTGCCTCC 58.584 50.000 17.50 0.00 40.80 4.30
5822 7632 0.101219 GCCTCCGACATTGCCAATTC 59.899 55.000 0.00 0.00 0.00 2.17
5858 7668 1.230324 GAAGTGGTGAGGTCAGTTGC 58.770 55.000 0.00 0.00 0.00 4.17
5862 7672 0.546122 TGGTGAGGTCAGTTGCTTGT 59.454 50.000 0.00 0.00 0.00 3.16
5875 7685 5.185056 TCAGTTGCTTGTGCTATGACTACTA 59.815 40.000 0.00 0.00 40.48 1.82
5879 7689 5.198207 TGCTTGTGCTATGACTACTAGGTA 58.802 41.667 0.00 0.00 40.48 3.08
5886 7696 7.039714 TGTGCTATGACTACTAGGTATTGGATG 60.040 40.741 0.00 0.00 0.00 3.51
5903 7713 4.570926 TGGATGAGGGACATAAAGGATCT 58.429 43.478 0.00 0.00 39.56 2.75
5946 7756 8.809159 TCATTCAAATTCTTAACATTTGCGAA 57.191 26.923 9.27 0.00 40.19 4.70
6000 7903 2.218953 ACACTTGGTCGTGTACACTG 57.781 50.000 23.01 16.14 45.65 3.66
6336 8261 0.512952 CCTTCGGACAAGAAGTTGCG 59.487 55.000 6.07 0.00 44.46 4.85
6363 8288 2.158871 TGGTCGTCTTAACTGCTTGGTT 60.159 45.455 0.00 0.00 0.00 3.67
6437 8364 7.139392 TCGATCAAGTTATTAGACGGATCAAG 58.861 38.462 0.00 0.00 36.18 3.02
6445 8372 5.598416 ATTAGACGGATCAAGTGTGATGA 57.402 39.130 0.00 0.00 44.83 2.92
6448 8375 4.437239 AGACGGATCAAGTGTGATGAATC 58.563 43.478 0.00 0.00 44.83 2.52
6467 8394 1.903860 TCCTACTGGTACAATGCCGTT 59.096 47.619 0.00 0.00 38.70 4.44
6488 8460 2.897326 TGCTAGTTGCTTGGAGTCACTA 59.103 45.455 0.00 0.00 43.37 2.74
6492 8464 5.163814 GCTAGTTGCTTGGAGTCACTATTTG 60.164 44.000 0.00 0.00 38.95 2.32
6511 8483 1.889573 GCTAGGTCGCTTGCCATCC 60.890 63.158 0.00 0.00 0.00 3.51
6516 8488 4.838152 TCGCTTGCCATCCCGCTC 62.838 66.667 0.00 0.00 0.00 5.03
6610 8811 7.070821 ACCTGAACTTTCTGGACTAAGTAGAAA 59.929 37.037 18.77 0.00 45.89 2.52
6611 8812 7.931948 CCTGAACTTTCTGGACTAAGTAGAAAA 59.068 37.037 8.81 0.00 45.89 2.29
6612 8813 9.326413 CTGAACTTTCTGGACTAAGTAGAAAAA 57.674 33.333 0.00 0.00 39.23 1.94
6641 8896 6.784473 TCTCCTCCATAATGATCACATACAGT 59.216 38.462 0.00 0.00 35.50 3.55
6695 8952 0.039527 CCGTGGCAAGTTTAAGCACC 60.040 55.000 0.00 0.00 0.00 5.01
6699 8956 0.039527 GGCAAGTTTAAGCACCACCG 60.040 55.000 0.00 0.00 0.00 4.94
6724 8981 8.188139 CGGTGCATTTTTACCTCAAAGTTATAT 58.812 33.333 0.00 0.00 34.77 0.86
6768 9055 4.406456 ACATGCTTTGGTCAGTTATTCCA 58.594 39.130 0.00 0.00 0.00 3.53
6771 9135 5.643379 TGCTTTGGTCAGTTATTCCATTC 57.357 39.130 0.00 0.00 0.00 2.67
6804 9168 4.095036 CCGTTGGGCTAATTCTTTCTCTTC 59.905 45.833 0.00 0.00 0.00 2.87
7662 10032 1.303888 TCCGCACCTACCGAGACTT 60.304 57.895 0.00 0.00 0.00 3.01
7680 10050 1.557269 TTCAAGGAGAGCTGGAGGGC 61.557 60.000 0.00 0.00 0.00 5.19
7915 10304 0.684535 TGGTTGAGACGCTGATTCCA 59.315 50.000 0.00 0.00 0.00 3.53
7919 10308 2.315925 TGAGACGCTGATTCCAATCC 57.684 50.000 0.00 0.00 34.50 3.01
7922 10317 1.776034 GACGCTGATTCCAATCCGGC 61.776 60.000 0.00 1.64 34.50 6.13
7947 10342 1.144093 AGCAGAGTAGAGCGGAGGTAT 59.856 52.381 0.00 0.00 39.88 2.73
7948 10343 2.372504 AGCAGAGTAGAGCGGAGGTATA 59.627 50.000 0.00 0.00 39.88 1.47
7949 10344 3.009695 AGCAGAGTAGAGCGGAGGTATAT 59.990 47.826 0.00 0.00 39.88 0.86
7950 10345 3.127895 GCAGAGTAGAGCGGAGGTATATG 59.872 52.174 0.00 0.00 39.88 1.78
7951 10346 3.692101 CAGAGTAGAGCGGAGGTATATGG 59.308 52.174 0.00 0.00 39.88 2.74
7953 10348 2.648304 AGTAGAGCGGAGGTATATGGGA 59.352 50.000 0.00 0.00 39.88 4.37
7954 10349 2.696526 AGAGCGGAGGTATATGGGAA 57.303 50.000 0.00 0.00 39.88 3.97
7955 10350 3.191888 AGAGCGGAGGTATATGGGAAT 57.808 47.619 0.00 0.00 39.88 3.01
7956 10351 3.100671 AGAGCGGAGGTATATGGGAATC 58.899 50.000 0.00 0.00 39.88 2.52
8086 12326 0.597118 CACGTGCCATGGTTGGTTTG 60.597 55.000 14.67 0.00 45.57 2.93
8089 12329 1.333177 GTGCCATGGTTGGTTTGGTA 58.667 50.000 14.67 0.00 45.57 3.25
8091 12331 0.246360 GCCATGGTTGGTTTGGTAGC 59.754 55.000 14.67 0.00 45.57 3.58
8135 12375 2.503895 AGTGAATTCCTCCCTGCTTG 57.496 50.000 2.27 0.00 0.00 4.01
8141 12381 5.067023 GTGAATTCCTCCCTGCTTGAATTAG 59.933 44.000 2.27 0.00 37.51 1.73
8164 12404 7.840342 AGCACTTTCAGTAATAATCAGTCAG 57.160 36.000 0.00 0.00 0.00 3.51
8165 12405 7.390027 AGCACTTTCAGTAATAATCAGTCAGT 58.610 34.615 0.00 0.00 0.00 3.41
8166 12406 7.880195 AGCACTTTCAGTAATAATCAGTCAGTT 59.120 33.333 0.00 0.00 0.00 3.16
8167 12407 9.151471 GCACTTTCAGTAATAATCAGTCAGTTA 57.849 33.333 0.00 0.00 0.00 2.24
8181 12425 7.801716 TCAGTCAGTTAAAACAATAGCACTT 57.198 32.000 0.00 0.00 0.00 3.16
8183 12427 6.792250 CAGTCAGTTAAAACAATAGCACTTCG 59.208 38.462 0.00 0.00 0.00 3.79
8208 12452 4.862574 GTGGAAGTGAACAAGAAAACCAAC 59.137 41.667 0.00 0.00 0.00 3.77
8218 12462 1.953686 AGAAAACCAACATCACACCCG 59.046 47.619 0.00 0.00 0.00 5.28
8220 12464 0.106419 AAACCAACATCACACCCGGT 60.106 50.000 0.00 0.00 0.00 5.28
8226 12470 0.539986 ACATCACACCCGGTATGGAC 59.460 55.000 0.00 0.00 42.00 4.02
8232 12476 2.035961 CACACCCGGTATGGACTCATAG 59.964 54.545 0.00 0.00 42.00 2.23
8233 12477 1.000955 CACCCGGTATGGACTCATAGC 59.999 57.143 0.00 5.74 45.71 2.97
8242 12486 5.853936 GTATGGACTCATAGCATGTTACCA 58.146 41.667 0.00 0.00 36.62 3.25
8243 12487 4.835284 TGGACTCATAGCATGTTACCAA 57.165 40.909 0.00 0.00 0.00 3.67
8244 12488 5.172687 TGGACTCATAGCATGTTACCAAA 57.827 39.130 0.00 0.00 0.00 3.28
8245 12489 5.565509 TGGACTCATAGCATGTTACCAAAA 58.434 37.500 0.00 0.00 0.00 2.44
8246 12490 6.007076 TGGACTCATAGCATGTTACCAAAAA 58.993 36.000 0.00 0.00 0.00 1.94
8280 12524 4.328983 CCCCGCTGTATATATAAAGCAACG 59.671 45.833 27.16 16.62 42.50 4.10
8284 12528 5.631929 CGCTGTATATATAAAGCAACGACCA 59.368 40.000 27.16 4.53 42.50 4.02
8285 12529 6.310467 CGCTGTATATATAAAGCAACGACCAT 59.690 38.462 27.16 0.00 42.50 3.55
8291 12535 6.942532 ATATAAAGCAACGACCATCAACAT 57.057 33.333 0.00 0.00 0.00 2.71
8292 12536 5.643379 ATAAAGCAACGACCATCAACATT 57.357 34.783 0.00 0.00 0.00 2.71
8299 12544 3.486383 ACGACCATCAACATTTGAACCT 58.514 40.909 0.00 0.00 43.95 3.50
8308 12553 8.522830 CCATCAACATTTGAACCTATACAAACT 58.477 33.333 0.00 0.00 43.95 2.66
8321 12566 6.269307 ACCTATACAAACTAGAACACACCACT 59.731 38.462 0.00 0.00 0.00 4.00
8323 12568 4.481368 ACAAACTAGAACACACCACTCA 57.519 40.909 0.00 0.00 0.00 3.41
8324 12569 4.839121 ACAAACTAGAACACACCACTCAA 58.161 39.130 0.00 0.00 0.00 3.02
8325 12570 5.250200 ACAAACTAGAACACACCACTCAAA 58.750 37.500 0.00 0.00 0.00 2.69
8336 12583 1.005450 ACCACTCAAAACCCACACACT 59.995 47.619 0.00 0.00 0.00 3.55
8343 12590 2.640581 AAACCCACACACTCAGGGCC 62.641 60.000 0.00 0.00 46.88 5.80
8358 12605 0.036875 GGGCCAGATACATAGGTGCC 59.963 60.000 4.39 0.00 36.68 5.01
8377 12624 1.339929 CCAAAGGGCTACAACCACAAC 59.660 52.381 0.00 0.00 0.00 3.32
8394 12642 2.276201 CAACACACCGAAAGACTCACA 58.724 47.619 0.00 0.00 0.00 3.58
8399 12647 3.921021 CACACCGAAAGACTCACATAGAC 59.079 47.826 0.00 0.00 0.00 2.59
8406 12654 6.349445 CCGAAAGACTCACATAGACTACAAGT 60.349 42.308 0.00 0.00 29.59 3.16
8407 12655 6.524933 CGAAAGACTCACATAGACTACAAGTG 59.475 42.308 5.58 5.58 29.59 3.16
8411 12659 6.151985 AGACTCACATAGACTACAAGTGAAGG 59.848 42.308 12.58 7.16 38.58 3.46
8412 12660 5.073311 TCACATAGACTACAAGTGAAGGC 57.927 43.478 10.27 0.00 36.39 4.35
8415 12663 5.120830 CACATAGACTACAAGTGAAGGCAAC 59.879 44.000 5.92 0.00 32.14 4.17
8434 12682 0.176680 CAAGCATCACTACGGAGCCT 59.823 55.000 0.00 0.00 0.00 4.58
8477 12725 7.814264 AGAAATCATGAAGAGTTGAAGTTGT 57.186 32.000 0.00 0.00 34.14 3.32
8480 12728 7.756395 AATCATGAAGAGTTGAAGTTGTGAT 57.244 32.000 0.00 0.00 0.00 3.06
8482 12730 7.572523 TCATGAAGAGTTGAAGTTGTGATTT 57.427 32.000 0.00 0.00 0.00 2.17
8486 12734 5.409643 AGAGTTGAAGTTGTGATTTGACG 57.590 39.130 0.00 0.00 0.00 4.35
8488 12736 5.584649 AGAGTTGAAGTTGTGATTTGACGAA 59.415 36.000 0.00 0.00 0.00 3.85
8499 12747 2.096481 TTTGACGAAACCGTGCGCTC 62.096 55.000 9.73 3.51 40.80 5.03
8503 12751 2.887889 CGAAACCGTGCGCTCCAAA 61.888 57.895 9.73 0.00 0.00 3.28
8508 12756 3.645975 CGTGCGCTCCAAAACGGT 61.646 61.111 9.73 0.00 35.57 4.83
8516 12764 0.593128 CTCCAAAACGGTGCCTTCAG 59.407 55.000 0.00 0.00 35.57 3.02
8532 12780 1.372997 CAGGAAGGACACGTCACCG 60.373 63.158 0.00 0.00 40.83 4.94
8534 12782 1.372623 GGAAGGACACGTCACCGTC 60.373 63.158 12.58 12.58 46.28 4.79
8535 12783 1.372623 GAAGGACACGTCACCGTCC 60.373 63.158 13.49 13.49 46.28 4.79
8538 12786 4.667420 GACACGTCACCGTCCAAT 57.333 55.556 0.00 0.00 46.28 3.16
8540 12788 1.005394 ACACGTCACCGTCCAATCC 60.005 57.895 0.00 0.00 46.28 3.01
8541 12789 1.005512 CACGTCACCGTCCAATCCA 60.006 57.895 0.00 0.00 46.28 3.41
8542 12790 0.601576 CACGTCACCGTCCAATCCAA 60.602 55.000 0.00 0.00 46.28 3.53
8543 12791 0.107081 ACGTCACCGTCCAATCCAAA 59.893 50.000 0.00 0.00 46.28 3.28
8544 12792 0.796312 CGTCACCGTCCAATCCAAAG 59.204 55.000 0.00 0.00 0.00 2.77
8545 12793 1.606994 CGTCACCGTCCAATCCAAAGA 60.607 52.381 0.00 0.00 0.00 2.52
8546 12794 2.711542 GTCACCGTCCAATCCAAAGAT 58.288 47.619 0.00 0.00 0.00 2.40
8548 12796 2.304470 TCACCGTCCAATCCAAAGATCA 59.696 45.455 0.00 0.00 0.00 2.92
8549 12797 2.679837 CACCGTCCAATCCAAAGATCAG 59.320 50.000 0.00 0.00 0.00 2.90
8582 12844 0.178990 GCACAACAAAGGGAGGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
8587 12849 0.981943 ACAAAGGGAGGGAGTAACCG 59.018 55.000 0.00 0.00 40.11 4.44
8591 12853 0.620700 AGGGAGGGAGTAACCGCAAT 60.621 55.000 0.00 0.00 40.11 3.56
8593 12855 0.463833 GGAGGGAGTAACCGCAATGG 60.464 60.000 0.00 0.00 46.41 3.16
8598 12860 1.207329 GGAGTAACCGCAATGGAGACT 59.793 52.381 0.00 0.00 42.00 3.24
8602 12864 2.270352 AACCGCAATGGAGACTTCAA 57.730 45.000 0.00 0.00 42.00 2.69
8607 12869 2.159599 CGCAATGGAGACTTCAAGAAGC 60.160 50.000 9.62 3.46 41.99 3.86
8608 12870 2.163211 GCAATGGAGACTTCAAGAAGCC 59.837 50.000 9.62 4.24 41.99 4.35
8611 12873 1.000955 TGGAGACTTCAAGAAGCCGAC 59.999 52.381 9.62 0.00 41.99 4.79
8614 12876 1.061485 GACTTCAAGAAGCCGACGAC 58.939 55.000 9.62 0.00 41.99 4.34
8632 12894 3.223589 GCCCACAAACGCCACCTT 61.224 61.111 0.00 0.00 0.00 3.50
8636 12898 1.278637 CACAAACGCCACCTTCGTC 59.721 57.895 0.00 0.00 39.48 4.20
8658 12920 3.557220 TGGCCGAAACCAGACAGA 58.443 55.556 0.00 0.00 33.75 3.41
8659 12921 1.371183 TGGCCGAAACCAGACAGAG 59.629 57.895 0.00 0.00 33.75 3.35
8670 12932 1.142870 CCAGACAGAGTTTTCACCCCA 59.857 52.381 0.00 0.00 0.00 4.96
8672 12934 1.202818 AGACAGAGTTTTCACCCCAGC 60.203 52.381 0.00 0.00 0.00 4.85
8679 12941 1.892474 GTTTTCACCCCAGCAAGCATA 59.108 47.619 0.00 0.00 0.00 3.14
8684 12946 1.524621 CCCCAGCAAGCATACTCCG 60.525 63.158 0.00 0.00 0.00 4.63
8692 12954 0.753262 AAGCATACTCCGCCTTCGAT 59.247 50.000 0.00 0.00 38.10 3.59
8694 12956 1.269998 AGCATACTCCGCCTTCGATAC 59.730 52.381 0.00 0.00 38.10 2.24
8695 12957 1.000607 GCATACTCCGCCTTCGATACA 60.001 52.381 0.00 0.00 38.10 2.29
8700 12962 0.968901 TCCGCCTTCGATACAGGTGT 60.969 55.000 12.89 0.00 39.92 4.16
8703 12965 1.090052 GCCTTCGATACAGGTGTGGC 61.090 60.000 3.65 0.00 33.40 5.01
8707 12969 0.613572 TCGATACAGGTGTGGCCAGA 60.614 55.000 5.11 0.00 40.61 3.86
8716 12978 2.077579 TGTGGCCAGACACATGGAT 58.922 52.632 5.11 0.00 45.70 3.41
8718 12980 0.035152 GTGGCCAGACACATGGATCA 60.035 55.000 5.11 0.00 43.57 2.92
8719 12981 0.035152 TGGCCAGACACATGGATCAC 60.035 55.000 0.00 0.00 43.57 3.06
8724 12986 0.986527 AGACACATGGATCACAGCCA 59.013 50.000 0.00 0.00 40.24 4.75
8736 12998 3.215568 CAGCCAAACACCGCCACA 61.216 61.111 0.00 0.00 0.00 4.17
8739 13001 2.485795 GCCAAACACCGCCACAGAA 61.486 57.895 0.00 0.00 0.00 3.02
8740 13002 1.654220 CCAAACACCGCCACAGAAG 59.346 57.895 0.00 0.00 0.00 2.85
8749 13011 1.860078 GCCACAGAAGGTCGAAACG 59.140 57.895 0.00 0.00 0.00 3.60
8753 13015 0.179067 ACAGAAGGTCGAAACGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
8755 13017 0.883370 AGAAGGTCGAAACGCCAACC 60.883 55.000 0.00 0.00 0.00 3.77
8757 13019 1.441732 AAGGTCGAAACGCCAACCAC 61.442 55.000 0.00 0.00 34.09 4.16
8761 13023 2.473760 CGAAACGCCAACCACCACA 61.474 57.895 0.00 0.00 0.00 4.17
8764 13026 4.887190 ACGCCAACCACCACACCC 62.887 66.667 0.00 0.00 0.00 4.61
8767 13029 3.826822 CCAACCACCACACCCCCA 61.827 66.667 0.00 0.00 0.00 4.96
8768 13030 2.520741 CAACCACCACACCCCCAC 60.521 66.667 0.00 0.00 0.00 4.61
8769 13031 3.024356 AACCACCACACCCCCACA 61.024 61.111 0.00 0.00 0.00 4.17
8770 13032 2.399607 AACCACCACACCCCCACAT 61.400 57.895 0.00 0.00 0.00 3.21
8771 13033 2.283101 CCACCACACCCCCACATG 60.283 66.667 0.00 0.00 0.00 3.21
8772 13034 2.283101 CACCACACCCCCACATGG 60.283 66.667 0.00 0.00 38.26 3.66
8773 13035 4.299796 ACCACACCCCCACATGGC 62.300 66.667 0.00 0.00 35.49 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.370126 GTGTAATGTTTATAATGTTCGAGATGC 57.630 33.333 0.00 0.00 0.00 3.91
3 4 9.863845 TCAGTGTAATGTTTATAATGTTCGAGA 57.136 29.630 0.00 0.00 0.00 4.04
5 6 9.863845 TCTCAGTGTAATGTTTATAATGTTCGA 57.136 29.630 0.00 0.00 0.00 3.71
12 13 9.613428 CCTGGAATCTCAGTGTAATGTTTATAA 57.387 33.333 0.00 0.00 33.14 0.98
13 14 8.988060 TCCTGGAATCTCAGTGTAATGTTTATA 58.012 33.333 0.00 0.00 33.14 0.98
14 15 7.770897 GTCCTGGAATCTCAGTGTAATGTTTAT 59.229 37.037 0.00 0.00 33.14 1.40
15 16 7.103641 GTCCTGGAATCTCAGTGTAATGTTTA 58.896 38.462 0.00 0.00 33.14 2.01
26 27 1.279496 TGGTGGTCCTGGAATCTCAG 58.721 55.000 0.00 0.00 34.23 3.35
28 29 2.224769 TGTTTGGTGGTCCTGGAATCTC 60.225 50.000 0.00 0.00 34.23 2.75
42 43 1.687563 GCAGTAGTGGGTTGTTTGGT 58.312 50.000 0.00 0.00 0.00 3.67
44 45 0.591170 CGGCAGTAGTGGGTTGTTTG 59.409 55.000 0.00 0.00 0.00 2.93
47 48 2.032071 GCGGCAGTAGTGGGTTGT 59.968 61.111 0.00 0.00 0.00 3.32
48 49 3.118454 CGCGGCAGTAGTGGGTTG 61.118 66.667 0.00 0.00 0.00 3.77
50 51 2.386064 TTTTCGCGGCAGTAGTGGGT 62.386 55.000 6.13 0.00 0.00 4.51
52 53 0.669318 TCTTTTCGCGGCAGTAGTGG 60.669 55.000 6.13 0.00 0.00 4.00
54 55 1.873698 TTTCTTTTCGCGGCAGTAGT 58.126 45.000 6.13 0.00 0.00 2.73
55 56 2.412847 CCTTTTCTTTTCGCGGCAGTAG 60.413 50.000 6.13 0.00 0.00 2.57
56 57 1.533731 CCTTTTCTTTTCGCGGCAGTA 59.466 47.619 6.13 0.00 0.00 2.74
57 58 0.310854 CCTTTTCTTTTCGCGGCAGT 59.689 50.000 6.13 0.00 0.00 4.40
58 59 0.591170 TCCTTTTCTTTTCGCGGCAG 59.409 50.000 6.13 0.00 0.00 4.85
59 60 1.243902 ATCCTTTTCTTTTCGCGGCA 58.756 45.000 6.13 0.00 0.00 5.69
60 61 2.251040 GAATCCTTTTCTTTTCGCGGC 58.749 47.619 6.13 0.00 0.00 6.53
61 62 2.505866 CGAATCCTTTTCTTTTCGCGG 58.494 47.619 6.13 0.00 35.18 6.46
62 63 2.158841 TCCGAATCCTTTTCTTTTCGCG 59.841 45.455 0.00 0.00 39.57 5.87
64 65 5.049680 TGTCTTCCGAATCCTTTTCTTTTCG 60.050 40.000 0.00 0.00 40.34 3.46
65 66 6.204882 TCTGTCTTCCGAATCCTTTTCTTTTC 59.795 38.462 0.00 0.00 0.00 2.29
68 69 5.228945 TCTGTCTTCCGAATCCTTTTCTT 57.771 39.130 0.00 0.00 0.00 2.52
69 70 4.891992 TCTGTCTTCCGAATCCTTTTCT 57.108 40.909 0.00 0.00 0.00 2.52
70 71 5.941948 TTTCTGTCTTCCGAATCCTTTTC 57.058 39.130 0.00 0.00 0.00 2.29
75 76 6.055588 TGGATAATTTCTGTCTTCCGAATCC 58.944 40.000 0.00 0.00 0.00 3.01
89 90 5.038247 ACGAACGTGGTTTGGATAATTTC 57.962 39.130 0.00 0.00 31.68 2.17
91 92 3.437741 GGACGAACGTGGTTTGGATAATT 59.562 43.478 4.19 0.00 31.68 1.40
92 93 3.004862 GGACGAACGTGGTTTGGATAAT 58.995 45.455 4.19 0.00 31.68 1.28
99 100 0.107557 ACCAAGGACGAACGTGGTTT 60.108 50.000 13.58 0.00 0.00 3.27
153 154 1.336125 ACACTGCTTTGCTTCTTCTGC 59.664 47.619 0.00 0.00 0.00 4.26
208 209 1.213013 GAGTGACGGCGTCTGACAT 59.787 57.895 36.17 19.43 33.15 3.06
210 211 1.004277 CTTGAGTGACGGCGTCTGAC 61.004 60.000 36.17 27.51 33.15 3.51
213 214 2.049063 GCTTGAGTGACGGCGTCT 60.049 61.111 36.17 20.80 33.15 4.18
216 217 2.856032 CTTGCTTGAGTGACGGCG 59.144 61.111 4.80 4.80 0.00 6.46
244 245 2.613691 GGATAAACCGAACGAGAAGCA 58.386 47.619 0.00 0.00 0.00 3.91
255 257 0.878961 GCGTGCTAGGGGATAAACCG 60.879 60.000 0.00 0.00 40.11 4.44
266 268 2.444624 ATGCGTTCGTGCGTGCTAG 61.445 57.895 0.00 0.00 37.81 3.42
268 270 4.075910 CATGCGTTCGTGCGTGCT 62.076 61.111 6.38 0.00 44.13 4.40
308 310 1.867166 TGTTGGTTTGTGCATGCATG 58.133 45.000 25.64 22.70 0.00 4.06
309 311 2.613133 GTTTGTTGGTTTGTGCATGCAT 59.387 40.909 25.64 0.00 0.00 3.96
310 312 2.005451 GTTTGTTGGTTTGTGCATGCA 58.995 42.857 18.46 18.46 0.00 3.96
367 377 4.179579 GAGGCCCGCGTTGATTGC 62.180 66.667 4.92 0.00 0.00 3.56
415 428 1.606668 TGCAAAATCCACGTGAAGACC 59.393 47.619 19.30 0.00 0.00 3.85
438 451 0.473755 TGACAAGCTGCTGGAAGGAA 59.526 50.000 11.82 0.00 29.53 3.36
472 485 2.583441 CGGGGCCAGTTGTCAGAGA 61.583 63.158 4.39 0.00 0.00 3.10
514 527 3.680786 GTGGGTTTCGCAAGGGGC 61.681 66.667 0.00 0.00 39.90 5.80
523 537 2.741211 GGACGAGCCGTGGGTTTC 60.741 66.667 4.94 0.00 41.37 2.78
620 634 4.081030 CAGCTGCGGCACAACGAG 62.081 66.667 21.93 0.00 41.70 4.18
840 866 4.011517 GAACGGGGTCAGGCCGAA 62.012 66.667 0.00 0.00 38.44 4.30
856 882 0.682852 CTCTGTGTGGGGGTAAACGA 59.317 55.000 0.00 0.00 0.00 3.85
864 890 1.302033 GAGTGTGCTCTGTGTGGGG 60.302 63.158 0.00 0.00 38.66 4.96
905 931 2.361357 AGTGGAGAGTAGCGCGGT 60.361 61.111 17.70 17.70 0.00 5.68
906 932 2.409651 GAGTGGAGAGTAGCGCGG 59.590 66.667 8.83 0.00 0.00 6.46
907 933 2.409651 GGAGTGGAGAGTAGCGCG 59.590 66.667 0.00 0.00 0.00 6.86
917 946 3.249189 GGTGGCAGTGGGAGTGGA 61.249 66.667 0.00 0.00 0.00 4.02
974 1006 2.728435 GGCGGGAGATGGTACGGTT 61.728 63.158 0.00 0.00 0.00 4.44
976 1008 3.925090 GGGCGGGAGATGGTACGG 61.925 72.222 0.00 0.00 0.00 4.02
1026 1072 4.577246 GCGAGCGCGAGGAAGGAT 62.577 66.667 15.92 0.00 40.82 3.24
1339 1386 0.443088 CGGGCGTGCGTTTTGTATAA 59.557 50.000 0.00 0.00 0.00 0.98
1340 1387 1.968703 GCGGGCGTGCGTTTTGTATA 61.969 55.000 0.00 0.00 0.00 1.47
1379 1426 1.898154 CGTCTTGACGGGATCCCTT 59.102 57.895 28.42 20.34 0.00 3.95
1496 1543 0.921347 CGCCGGTAGATTTGTTCTCG 59.079 55.000 1.90 0.00 35.79 4.04
1715 1762 4.415332 GACGGCGGCGTCTTCTCA 62.415 66.667 44.95 0.00 36.12 3.27
1750 1797 2.757917 GAGCAGAGGCCGAGGACT 60.758 66.667 0.00 0.00 42.56 3.85
1760 1807 2.363018 TCAGACCCGGGAGCAGAG 60.363 66.667 32.02 10.63 0.00 3.35
1798 1845 1.543429 CCGCACCCTTCTTCAGTTCTT 60.543 52.381 0.00 0.00 0.00 2.52
1799 1846 0.035458 CCGCACCCTTCTTCAGTTCT 59.965 55.000 0.00 0.00 0.00 3.01
1821 1868 2.349912 GCTTTGGAGCTTCTTCGACAAC 60.350 50.000 0.00 0.00 45.65 3.32
1895 1942 7.229707 TCCTCGAAACCAATGTATTTCTTGAAA 59.770 33.333 0.00 0.00 33.49 2.69
1997 2044 2.045926 CCTGCCAAAGGTCCGGAG 60.046 66.667 3.06 0.00 41.74 4.63
2051 2098 1.067060 GTTTTGCACCAGGGAGAACAC 59.933 52.381 0.00 0.00 33.01 3.32
2105 2152 6.125327 TCGAGCAAAGTTTTATGAACAACA 57.875 33.333 0.00 0.00 0.00 3.33
2169 2218 3.134127 GCACCCGCAACATCTCCC 61.134 66.667 0.00 0.00 38.36 4.30
2235 2284 5.140454 ACCCAACAGAGTTAAATGAAAGCT 58.860 37.500 0.00 0.00 0.00 3.74
2256 2305 8.873830 CACTGATATTATTCGAACATATGGACC 58.126 37.037 13.84 3.77 0.00 4.46
2325 2374 5.687166 AATTTACGGAGGGAGTATGACAA 57.313 39.130 0.00 0.00 0.00 3.18
2332 2381 8.312564 GCTCTTATATTAATTTACGGAGGGAGT 58.687 37.037 0.00 0.00 0.00 3.85
2333 2382 7.488471 CGCTCTTATATTAATTTACGGAGGGAG 59.512 40.741 17.02 0.00 34.63 4.30
2334 2383 7.039504 ACGCTCTTATATTAATTTACGGAGGGA 60.040 37.037 22.59 0.00 35.94 4.20
2335 2384 7.095270 ACGCTCTTATATTAATTTACGGAGGG 58.905 38.462 18.58 18.58 37.30 4.30
2336 2385 8.530269 AACGCTCTTATATTAATTTACGGAGG 57.470 34.615 0.00 0.00 0.00 4.30
2353 2402 9.570488 CACTAAAGTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 37.23 2.85
2354 2403 8.954350 TCACTAAAGTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 37.23 4.09
2355 2404 9.733219 ATCACTAAAGTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 37.23 5.03
2356 2405 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
2357 2406 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
2363 2412 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
2364 2413 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
2365 2414 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
2366 2415 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
2367 2416 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
2368 2417 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2369 2418 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2371 2420 9.953697 CTATAAGAGCGTTTAGATCACTAAAGT 57.046 33.333 0.00 0.00 45.42 2.66
2372 2421 9.953697 ACTATAAGAGCGTTTAGATCACTAAAG 57.046 33.333 0.00 0.00 45.42 1.85
2375 2424 9.775854 ACTACTATAAGAGCGTTTAGATCACTA 57.224 33.333 0.00 0.00 37.82 2.74
2376 2425 8.680039 ACTACTATAAGAGCGTTTAGATCACT 57.320 34.615 0.00 0.00 37.82 3.41
2377 2426 9.733219 AAACTACTATAAGAGCGTTTAGATCAC 57.267 33.333 0.00 0.00 37.82 3.06
2383 2432 9.994432 GTCTGTAAACTACTATAAGAGCGTTTA 57.006 33.333 0.00 0.00 35.17 2.01
2384 2433 7.695618 CGTCTGTAAACTACTATAAGAGCGTTT 59.304 37.037 0.00 0.00 36.56 3.60
2385 2434 7.185453 CGTCTGTAAACTACTATAAGAGCGTT 58.815 38.462 0.00 0.00 0.00 4.84
2386 2435 6.238320 CCGTCTGTAAACTACTATAAGAGCGT 60.238 42.308 0.00 0.00 0.00 5.07
2387 2436 6.018425 TCCGTCTGTAAACTACTATAAGAGCG 60.018 42.308 0.00 0.00 0.00 5.03
2388 2437 7.012232 ACTCCGTCTGTAAACTACTATAAGAGC 59.988 40.741 0.00 0.00 0.00 4.09
2389 2438 8.436046 ACTCCGTCTGTAAACTACTATAAGAG 57.564 38.462 0.00 0.00 0.00 2.85
2390 2439 9.539825 CTACTCCGTCTGTAAACTACTATAAGA 57.460 37.037 0.00 0.00 0.00 2.10
2391 2440 9.539825 TCTACTCCGTCTGTAAACTACTATAAG 57.460 37.037 0.00 0.00 0.00 1.73
2392 2441 9.539825 CTCTACTCCGTCTGTAAACTACTATAA 57.460 37.037 0.00 0.00 0.00 0.98
2393 2442 8.700051 ACTCTACTCCGTCTGTAAACTACTATA 58.300 37.037 0.00 0.00 0.00 1.31
2394 2443 7.563906 ACTCTACTCCGTCTGTAAACTACTAT 58.436 38.462 0.00 0.00 0.00 2.12
2395 2444 6.940739 ACTCTACTCCGTCTGTAAACTACTA 58.059 40.000 0.00 0.00 0.00 1.82
2396 2445 5.803552 ACTCTACTCCGTCTGTAAACTACT 58.196 41.667 0.00 0.00 0.00 2.57
2397 2446 7.784633 ATACTCTACTCCGTCTGTAAACTAC 57.215 40.000 0.00 0.00 0.00 2.73
2398 2447 8.798859 AAATACTCTACTCCGTCTGTAAACTA 57.201 34.615 0.00 0.00 0.00 2.24
2399 2448 7.392673 TGAAATACTCTACTCCGTCTGTAAACT 59.607 37.037 0.00 0.00 0.00 2.66
2400 2449 7.533426 TGAAATACTCTACTCCGTCTGTAAAC 58.467 38.462 0.00 0.00 0.00 2.01
2401 2450 7.692460 TGAAATACTCTACTCCGTCTGTAAA 57.308 36.000 0.00 0.00 0.00 2.01
2402 2451 7.876936 ATGAAATACTCTACTCCGTCTGTAA 57.123 36.000 0.00 0.00 0.00 2.41
2403 2452 7.172875 GCTATGAAATACTCTACTCCGTCTGTA 59.827 40.741 0.00 0.00 0.00 2.74
2404 2453 6.016943 GCTATGAAATACTCTACTCCGTCTGT 60.017 42.308 0.00 0.00 0.00 3.41
2405 2454 6.375377 GCTATGAAATACTCTACTCCGTCTG 58.625 44.000 0.00 0.00 0.00 3.51
2406 2455 5.474189 GGCTATGAAATACTCTACTCCGTCT 59.526 44.000 0.00 0.00 0.00 4.18
2407 2456 5.241064 TGGCTATGAAATACTCTACTCCGTC 59.759 44.000 0.00 0.00 0.00 4.79
2408 2457 5.138276 TGGCTATGAAATACTCTACTCCGT 58.862 41.667 0.00 0.00 0.00 4.69
2409 2458 5.707242 TGGCTATGAAATACTCTACTCCG 57.293 43.478 0.00 0.00 0.00 4.63
2410 2459 6.224584 GGTTGGCTATGAAATACTCTACTCC 58.775 44.000 0.00 0.00 0.00 3.85
2411 2460 6.042208 AGGGTTGGCTATGAAATACTCTACTC 59.958 42.308 0.00 0.00 0.00 2.59
2412 2461 5.905913 AGGGTTGGCTATGAAATACTCTACT 59.094 40.000 0.00 0.00 0.00 2.57
2413 2462 5.992217 CAGGGTTGGCTATGAAATACTCTAC 59.008 44.000 0.00 0.00 0.00 2.59
2450 2499 2.370445 CCCACCCAGTAGGCCTCAG 61.370 68.421 9.68 0.00 40.58 3.35
2453 2502 4.760220 CCCCCACCCAGTAGGCCT 62.760 72.222 11.78 11.78 40.58 5.19
2467 2516 0.105401 TTGTTTCAAACCCCCTCCCC 60.105 55.000 0.00 0.00 0.00 4.81
2484 2533 0.537143 TGGCTGCTAACCACCACTTG 60.537 55.000 0.00 0.00 30.29 3.16
2501 2550 3.192212 GCCTCCTTCTTTGTGAAATCTGG 59.808 47.826 0.00 0.00 33.79 3.86
2503 2552 4.077822 CAGCCTCCTTCTTTGTGAAATCT 58.922 43.478 0.00 0.00 33.79 2.40
2534 2583 4.927049 ACATTCATTCCTTCACTGATGGT 58.073 39.130 10.10 0.00 0.00 3.55
2630 2680 6.358178 TGGCGATATTTGGTACCTAATTGAA 58.642 36.000 23.69 9.25 0.00 2.69
2634 2684 4.324267 GCTGGCGATATTTGGTACCTAAT 58.676 43.478 22.45 22.45 0.00 1.73
2638 2688 0.865769 CGCTGGCGATATTTGGTACC 59.134 55.000 9.51 4.43 42.83 3.34
2775 2825 7.609760 TGAAAGCTCGACAACATACATTTAT 57.390 32.000 0.00 0.00 0.00 1.40
2791 2841 7.577979 TCAAAATTGCATTGAAATGAAAGCTC 58.422 30.769 7.21 0.00 37.36 4.09
2815 2865 0.931005 CGCGAAACTAGCTCCCAATC 59.069 55.000 0.00 0.00 0.00 2.67
2831 2881 2.884207 GGCTCTAACCGAACCGCG 60.884 66.667 0.00 0.00 40.47 6.46
2833 2883 0.174845 TGATGGCTCTAACCGAACCG 59.825 55.000 0.00 0.00 30.10 4.44
3156 3207 1.025812 CTCCGACATCGTAGGCTTCT 58.974 55.000 0.00 0.00 37.74 2.85
3211 3262 2.094026 GCTCCCCTTCGATTGCATTTTT 60.094 45.455 0.00 0.00 0.00 1.94
3223 3274 5.105187 AGCAATAAAATTTCAGCTCCCCTTC 60.105 40.000 0.00 0.00 0.00 3.46
3543 3602 5.721480 TCAATTGAGTTGGAGAGATACCTCA 59.279 40.000 3.38 0.00 38.84 3.86
3782 4322 7.844482 GGAAATGCTATTTCCAAATCAATTCG 58.156 34.615 24.13 0.00 45.50 3.34
3850 4392 9.990360 TGATATGCCAAGTACGAAAATATCTAA 57.010 29.630 14.25 0.96 0.00 2.10
4364 4907 2.922740 TAGACGGGAATACAATGCCC 57.077 50.000 0.00 0.00 38.53 5.36
4554 5098 5.387113 TGAAGTGCATAGGGGATTAATGT 57.613 39.130 0.00 0.00 0.00 2.71
4787 6515 0.386838 GGGGCATGCTCACTATTTGC 59.613 55.000 21.47 0.00 0.00 3.68
4834 6563 3.525199 AGCTCCAAGGGTTATCAAGACAT 59.475 43.478 0.00 0.00 0.00 3.06
4886 6615 0.885196 GCTAGGTCGGGCTCTATGAG 59.115 60.000 0.00 0.00 0.00 2.90
4887 6616 0.539901 GGCTAGGTCGGGCTCTATGA 60.540 60.000 0.00 0.00 0.00 2.15
4890 6619 2.203308 CGGCTAGGTCGGGCTCTA 60.203 66.667 0.00 0.00 0.00 2.43
4897 6626 1.450531 ATAACGGTCCGGCTAGGTCG 61.451 60.000 17.28 12.15 41.99 4.79
4912 6641 4.503469 GGCTCCCAAGTAGGCTTCTATAAC 60.503 50.000 0.00 0.00 36.63 1.89
4990 6720 2.499693 GGAGAAGGAGAGGAGAAGTTGG 59.500 54.545 0.00 0.00 0.00 3.77
4992 6722 2.112691 TGGGAGAAGGAGAGGAGAAGTT 59.887 50.000 0.00 0.00 0.00 2.66
5007 6737 1.827399 GAAACGGCCAGAGTGGGAGA 61.827 60.000 2.24 0.00 38.19 3.71
5010 6740 2.359975 GGAAACGGCCAGAGTGGG 60.360 66.667 2.24 0.00 38.19 4.61
5012 6742 2.359975 GGGGAAACGGCCAGAGTG 60.360 66.667 2.24 0.00 0.00 3.51
5013 6743 3.647771 GGGGGAAACGGCCAGAGT 61.648 66.667 2.24 0.00 0.00 3.24
5104 6837 2.644676 GGGAAAAGGTGCTAGGCTTAG 58.355 52.381 0.00 0.00 0.00 2.18
5105 6838 1.283905 GGGGAAAAGGTGCTAGGCTTA 59.716 52.381 0.00 0.00 0.00 3.09
5121 6854 0.482446 ACTTGCAATTGGTGAGGGGA 59.518 50.000 7.72 0.00 0.00 4.81
5130 6863 0.037046 GGCTCCCCAACTTGCAATTG 60.037 55.000 0.00 0.00 0.00 2.32
5154 6887 4.253257 CCGACGTAGGGAGCTCGC 62.253 72.222 22.44 22.44 0.00 5.03
5179 6912 4.704833 GAGTTGAGGCGGCAGGCA 62.705 66.667 13.08 3.08 46.16 4.75
5225 6958 1.357334 GAGGTCGAGGAGATGTCGC 59.643 63.158 0.00 0.00 37.35 5.19
5256 6989 3.785859 GTGATCCTCGCCAGGCCA 61.786 66.667 5.01 0.00 40.12 5.36
5264 6997 0.460109 TGAACATGCGGTGATCCTCG 60.460 55.000 0.00 0.00 0.00 4.63
5289 7022 7.491372 TGTTAGTTCTATGATGATTCGGTTCAC 59.509 37.037 0.00 0.00 0.00 3.18
5290 7023 7.491372 GTGTTAGTTCTATGATGATTCGGTTCA 59.509 37.037 0.00 0.00 0.00 3.18
5293 7026 6.281405 GGTGTTAGTTCTATGATGATTCGGT 58.719 40.000 0.00 0.00 0.00 4.69
5318 7051 2.491022 CCGTCGGGATGACCTCTCC 61.491 68.421 2.34 0.00 45.23 3.71
5336 7069 0.179134 ATAGAGGAACAGTGCGACGC 60.179 55.000 14.19 14.19 0.00 5.19
5367 7100 4.027665 CGTCTTATATTATGACGCGACACG 59.972 45.833 15.93 4.70 45.10 4.49
5412 7145 4.780815 AGAAATAGCCATTGAACCGATGA 58.219 39.130 0.00 0.00 0.00 2.92
5413 7146 5.505173 AAGAAATAGCCATTGAACCGATG 57.495 39.130 0.00 0.00 0.00 3.84
5414 7147 5.888161 AGAAAGAAATAGCCATTGAACCGAT 59.112 36.000 0.00 0.00 0.00 4.18
5416 7149 5.449177 GGAGAAAGAAATAGCCATTGAACCG 60.449 44.000 0.00 0.00 0.00 4.44
5417 7150 5.654209 AGGAGAAAGAAATAGCCATTGAACC 59.346 40.000 0.00 0.00 0.00 3.62
5419 7152 6.248433 ACAGGAGAAAGAAATAGCCATTGAA 58.752 36.000 0.00 0.00 0.00 2.69
5420 7153 5.819991 ACAGGAGAAAGAAATAGCCATTGA 58.180 37.500 0.00 0.00 0.00 2.57
5421 7154 5.884792 AGACAGGAGAAAGAAATAGCCATTG 59.115 40.000 0.00 0.00 0.00 2.82
5423 7156 5.707066 AGACAGGAGAAAGAAATAGCCAT 57.293 39.130 0.00 0.00 0.00 4.40
5425 7158 6.045955 CAGTAGACAGGAGAAAGAAATAGCC 58.954 44.000 0.00 0.00 0.00 3.93
5433 7234 6.406400 CCCACTTATCAGTAGACAGGAGAAAG 60.406 46.154 0.00 0.00 0.00 2.62
5442 7243 3.371965 TGGGTCCCACTTATCAGTAGAC 58.628 50.000 6.47 2.25 35.84 2.59
5467 7268 1.911057 AAGAAAGGGCTTAGTGTGGC 58.089 50.000 0.00 0.00 0.00 5.01
5468 7269 3.753797 GAGAAAGAAAGGGCTTAGTGTGG 59.246 47.826 0.00 0.00 0.00 4.17
5471 7272 4.293662 AGGAGAAAGAAAGGGCTTAGTG 57.706 45.455 0.00 0.00 0.00 2.74
5484 7285 5.109903 CACTTATCAACGGGTAGGAGAAAG 58.890 45.833 0.00 0.00 0.00 2.62
5486 7287 3.449737 CCACTTATCAACGGGTAGGAGAA 59.550 47.826 0.00 0.00 0.00 2.87
5491 7292 2.159000 GGTCCCACTTATCAACGGGTAG 60.159 54.545 0.00 0.00 39.87 3.18
5493 7294 0.616891 GGTCCCACTTATCAACGGGT 59.383 55.000 0.00 0.00 39.87 5.28
5521 7322 5.358442 TCATGTTCTCTCTCTGGCTAAGTAC 59.642 44.000 0.00 0.00 0.00 2.73
5559 7360 2.742372 GACATGGCTTGCCGACGT 60.742 61.111 7.18 3.81 0.00 4.34
5563 7364 3.047718 CTGCTGACATGGCTTGCCG 62.048 63.158 13.15 4.75 0.00 5.69
5573 7374 0.679505 AGCCGTTAAGACTGCTGACA 59.320 50.000 0.00 0.00 43.51 3.58
5575 7376 1.890489 TGTAGCCGTTAAGACTGCTGA 59.110 47.619 5.85 0.00 44.60 4.26
5600 7401 1.134367 CTCACGTGACACCATATCCGT 59.866 52.381 15.76 0.00 0.00 4.69
5601 7402 1.840181 CTCACGTGACACCATATCCG 58.160 55.000 15.76 0.00 0.00 4.18
5616 7417 3.185797 ACTTTCCATTCGTAAACGCTCAC 59.814 43.478 0.00 0.00 39.60 3.51
5640 7450 1.459975 GCTCTCGCATGCAGTATGATG 59.540 52.381 19.57 0.00 39.21 3.07
5642 7452 0.249615 GGCTCTCGCATGCAGTATGA 60.250 55.000 19.57 5.23 39.21 2.15
5643 7453 0.531311 TGGCTCTCGCATGCAGTATG 60.531 55.000 19.57 0.14 39.88 2.39
5647 7457 1.883544 CTCTGGCTCTCGCATGCAG 60.884 63.158 19.57 14.00 38.10 4.41
5648 7458 2.186125 CTCTGGCTCTCGCATGCA 59.814 61.111 19.57 4.02 38.10 3.96
5649 7459 3.270839 GCTCTGGCTCTCGCATGC 61.271 66.667 7.91 7.91 38.10 4.06
5650 7460 2.588314 GGCTCTGGCTCTCGCATG 60.588 66.667 0.00 0.00 38.10 4.06
5651 7461 3.079478 TGGCTCTGGCTCTCGCAT 61.079 61.111 0.00 0.00 38.10 4.73
5652 7462 3.767806 CTGGCTCTGGCTCTCGCA 61.768 66.667 0.00 0.00 38.10 5.10
5653 7463 4.527583 CCTGGCTCTGGCTCTCGC 62.528 72.222 0.00 0.00 38.73 5.03
5654 7464 2.177594 AAACCTGGCTCTGGCTCTCG 62.178 60.000 0.00 0.00 38.73 4.04
5655 7465 0.037447 AAAACCTGGCTCTGGCTCTC 59.963 55.000 0.00 0.00 38.73 3.20
5687 7497 4.661993 TGCTCGCAGTTGTAAAATACAG 57.338 40.909 0.00 0.00 40.24 2.74
5694 7504 3.058983 CACTTTGATGCTCGCAGTTGTAA 60.059 43.478 0.00 0.00 0.00 2.41
5709 7519 3.936453 GGTTCGGCATATGTACACTTTGA 59.064 43.478 0.00 0.00 0.00 2.69
5722 7532 1.686355 TGTTCACTTTGGTTCGGCAT 58.314 45.000 0.00 0.00 0.00 4.40
5723 7533 1.336440 CATGTTCACTTTGGTTCGGCA 59.664 47.619 0.00 0.00 0.00 5.69
5745 7555 3.149196 GCACCAGAAAAGAATGGACTCA 58.851 45.455 0.00 0.00 39.02 3.41
5765 7575 3.365265 CTTTGAGCCACCCACCGC 61.365 66.667 0.00 0.00 0.00 5.68
5768 7578 1.172812 GGTGTCTTTGAGCCACCCAC 61.173 60.000 0.00 0.00 42.27 4.61
5803 7613 0.101219 GAATTGGCAATGTCGGAGGC 59.899 55.000 14.47 0.00 0.00 4.70
5808 7618 0.798009 GCACCGAATTGGCAATGTCG 60.798 55.000 24.72 24.72 43.94 4.35
5839 7649 1.202698 AGCAACTGACCTCACCACTTC 60.203 52.381 0.00 0.00 0.00 3.01
5846 7656 0.181114 AGCACAAGCAACTGACCTCA 59.819 50.000 0.00 0.00 45.49 3.86
5847 7657 2.169832 TAGCACAAGCAACTGACCTC 57.830 50.000 0.00 0.00 45.49 3.85
5858 7668 7.014326 TCCAATACCTAGTAGTCATAGCACAAG 59.986 40.741 0.00 0.00 0.00 3.16
5862 7672 7.238710 TCATCCAATACCTAGTAGTCATAGCA 58.761 38.462 0.00 0.00 0.00 3.49
5875 7685 5.073691 CCTTTATGTCCCTCATCCAATACCT 59.926 44.000 0.00 0.00 37.91 3.08
5879 7689 5.614402 AGATCCTTTATGTCCCTCATCCAAT 59.386 40.000 0.00 0.00 37.91 3.16
5946 7756 2.877168 GAGATGGAAATCATGAAGCGCT 59.123 45.455 2.64 2.64 35.97 5.92
6000 7903 2.600867 CGAGAAGCGACCTGAGAAATTC 59.399 50.000 0.00 0.00 44.57 2.17
6014 7917 1.922570 TGCGGATTTAGACGAGAAGC 58.077 50.000 0.00 0.00 0.00 3.86
6150 8072 1.880027 GTTCATTGTGCGGAAGACCTT 59.120 47.619 0.00 0.00 0.00 3.50
6179 8101 0.611200 TCGGGAAGAGCGGATCAAAA 59.389 50.000 0.00 0.00 0.00 2.44
6184 8106 0.970937 TGTCTTCGGGAAGAGCGGAT 60.971 55.000 11.21 0.00 46.93 4.18
6187 8109 0.038159 AAGTGTCTTCGGGAAGAGCG 60.038 55.000 11.21 0.00 46.93 5.03
6336 8261 4.304939 AGCAGTTAAGACGACCAAACTAC 58.695 43.478 0.00 0.00 31.20 2.73
6363 8288 4.464244 TGTTGTTGTGTTCCTTCCAAATCA 59.536 37.500 0.00 0.00 0.00 2.57
6437 8364 5.339008 TGTACCAGTAGGATTCATCACAC 57.661 43.478 0.00 0.00 38.69 3.82
6445 8372 2.504175 ACGGCATTGTACCAGTAGGATT 59.496 45.455 0.00 0.00 38.69 3.01
6448 8375 2.006888 CAACGGCATTGTACCAGTAGG 58.993 52.381 0.00 0.00 35.66 3.18
6488 8460 1.032114 GGCAAGCGACCTAGCCAAAT 61.032 55.000 0.00 0.00 46.26 2.32
6578 8778 5.941788 AGTCCAGAAAGTTCAGGTTACATT 58.058 37.500 2.79 0.00 35.55 2.71
6610 8811 8.827832 TGTGATCATTATGGAGGAGAATTTTT 57.172 30.769 0.00 0.00 0.00 1.94
6612 8813 9.512588 GTATGTGATCATTATGGAGGAGAATTT 57.487 33.333 0.00 0.00 35.70 1.82
6613 8814 8.663167 TGTATGTGATCATTATGGAGGAGAATT 58.337 33.333 0.00 0.00 35.70 2.17
6614 8815 8.211030 TGTATGTGATCATTATGGAGGAGAAT 57.789 34.615 0.00 0.00 35.70 2.40
6617 8870 7.002250 ACTGTATGTGATCATTATGGAGGAG 57.998 40.000 0.00 0.00 35.70 3.69
6623 8876 8.307921 CAGGAGAACTGTATGTGATCATTATG 57.692 38.462 0.00 0.00 42.42 1.90
6641 8896 2.559698 TTTCGAACCATGCAGGAGAA 57.440 45.000 0.00 4.57 41.22 2.87
6669 8926 1.981256 AAACTTGCCACGGATGTTCT 58.019 45.000 0.00 0.00 0.00 3.01
6676 8933 0.039527 GGTGCTTAAACTTGCCACGG 60.040 55.000 0.00 0.00 0.00 4.94
6677 8934 0.665835 TGGTGCTTAAACTTGCCACG 59.334 50.000 0.00 0.00 0.00 4.94
6695 8952 1.883275 TGAGGTAAAAATGCACCGGTG 59.117 47.619 30.66 30.66 39.94 4.94
6724 8981 2.535012 TTCGGCATGTCAGTGTTGTA 57.465 45.000 0.00 0.00 0.00 2.41
6726 8983 2.995466 AATTCGGCATGTCAGTGTTG 57.005 45.000 0.00 0.00 0.00 3.33
6727 8984 3.407698 TGTAATTCGGCATGTCAGTGTT 58.592 40.909 0.00 0.00 0.00 3.32
6730 8987 2.355756 GCATGTAATTCGGCATGTCAGT 59.644 45.455 14.75 0.00 43.04 3.41
6804 9168 2.185867 GGCCCTGCATGCAACATG 59.814 61.111 22.88 9.84 0.00 3.21
7098 9468 2.261671 CGTCCGACTTGAGGTGGG 59.738 66.667 0.00 0.00 43.89 4.61
7353 9723 4.443266 GCTCCCGCTCGAAGTGCT 62.443 66.667 0.00 0.00 45.74 4.40
7657 10027 2.178580 CTCCAGCTCTCCTTGAAGTCT 58.821 52.381 0.00 0.00 0.00 3.24
7662 10032 1.992277 GCCCTCCAGCTCTCCTTGA 60.992 63.158 0.00 0.00 0.00 3.02
7915 10304 2.762459 TCTGCTACGGGCCGGATT 60.762 61.111 31.78 12.31 40.92 3.01
7919 10308 1.787057 CTCTACTCTGCTACGGGCCG 61.787 65.000 27.06 27.06 40.92 6.13
7922 10317 1.649815 CGCTCTACTCTGCTACGGG 59.350 63.158 0.00 0.00 0.00 5.28
7948 10343 9.936329 ATTACAATACCAAGTTAAGATTCCCAT 57.064 29.630 0.00 0.00 0.00 4.00
7949 10344 9.762381 AATTACAATACCAAGTTAAGATTCCCA 57.238 29.630 0.00 0.00 0.00 4.37
8086 12326 2.173382 CGTTTGCACTGCGCTACC 59.827 61.111 9.73 0.00 43.06 3.18
8162 12402 6.792250 CACTCGAAGTGCTATTGTTTTAACTG 59.208 38.462 2.75 0.00 39.62 3.16
8164 12404 6.073440 TCCACTCGAAGTGCTATTGTTTTAAC 60.073 38.462 8.85 0.00 44.63 2.01
8165 12405 5.992829 TCCACTCGAAGTGCTATTGTTTTAA 59.007 36.000 8.85 0.00 44.63 1.52
8166 12406 5.543714 TCCACTCGAAGTGCTATTGTTTTA 58.456 37.500 8.85 0.00 44.63 1.52
8167 12407 4.385825 TCCACTCGAAGTGCTATTGTTTT 58.614 39.130 8.85 0.00 44.63 2.43
8181 12425 3.812156 TTCTTGTTCACTTCCACTCGA 57.188 42.857 0.00 0.00 0.00 4.04
8183 12427 4.398044 TGGTTTTCTTGTTCACTTCCACTC 59.602 41.667 0.00 0.00 0.00 3.51
8187 12431 5.066968 TGTTGGTTTTCTTGTTCACTTCC 57.933 39.130 0.00 0.00 0.00 3.46
8193 12437 4.803613 GGTGTGATGTTGGTTTTCTTGTTC 59.196 41.667 0.00 0.00 0.00 3.18
8208 12452 0.830648 AGTCCATACCGGGTGTGATG 59.169 55.000 23.65 12.72 34.36 3.07
8218 12462 5.221641 TGGTAACATGCTATGAGTCCATACC 60.222 44.000 0.00 0.00 46.17 2.73
8250 12494 0.034896 ATATACAGCGGGGCGAAAGG 59.965 55.000 0.00 0.00 0.00 3.11
8256 12500 3.869065 TGCTTTATATATACAGCGGGGC 58.131 45.455 20.58 4.03 38.55 5.80
8264 12508 8.984764 TGTTGATGGTCGTTGCTTTATATATAC 58.015 33.333 0.00 0.00 0.00 1.47
8280 12524 7.624360 TGTATAGGTTCAAATGTTGATGGTC 57.376 36.000 0.00 0.00 39.84 4.02
8291 12535 9.048446 GTGTGTTCTAGTTTGTATAGGTTCAAA 57.952 33.333 0.00 0.00 0.00 2.69
8292 12536 7.658575 GGTGTGTTCTAGTTTGTATAGGTTCAA 59.341 37.037 0.00 0.00 0.00 2.69
8299 12544 7.292713 TGAGTGGTGTGTTCTAGTTTGTATA 57.707 36.000 0.00 0.00 0.00 1.47
8308 12553 3.054287 TGGGTTTTGAGTGGTGTGTTCTA 60.054 43.478 0.00 0.00 0.00 2.10
8309 12554 2.291282 TGGGTTTTGAGTGGTGTGTTCT 60.291 45.455 0.00 0.00 0.00 3.01
8310 12555 2.096248 TGGGTTTTGAGTGGTGTGTTC 58.904 47.619 0.00 0.00 0.00 3.18
8321 12566 1.409521 CCCTGAGTGTGTGGGTTTTGA 60.410 52.381 0.00 0.00 36.32 2.69
8323 12568 0.755327 GCCCTGAGTGTGTGGGTTTT 60.755 55.000 0.00 0.00 42.77 2.43
8324 12569 1.152756 GCCCTGAGTGTGTGGGTTT 60.153 57.895 0.00 0.00 42.77 3.27
8325 12570 2.515901 GCCCTGAGTGTGTGGGTT 59.484 61.111 0.00 0.00 42.77 4.11
8336 12583 2.329267 CACCTATGTATCTGGCCCTGA 58.671 52.381 0.00 0.00 0.00 3.86
8343 12590 3.480470 CCCTTTGGCACCTATGTATCTG 58.520 50.000 0.00 0.00 0.00 2.90
8358 12605 2.028130 TGTTGTGGTTGTAGCCCTTTG 58.972 47.619 0.00 0.00 0.00 2.77
8372 12619 2.030457 GTGAGTCTTTCGGTGTGTTGTG 59.970 50.000 0.00 0.00 0.00 3.33
8377 12624 3.921021 GTCTATGTGAGTCTTTCGGTGTG 59.079 47.826 0.00 0.00 0.00 3.82
8394 12642 5.483685 TGTTGCCTTCACTTGTAGTCTAT 57.516 39.130 0.00 0.00 0.00 1.98
8399 12647 2.618241 TGCTTGTTGCCTTCACTTGTAG 59.382 45.455 0.00 0.00 42.00 2.74
8406 12654 1.985473 AGTGATGCTTGTTGCCTTCA 58.015 45.000 0.00 0.00 42.00 3.02
8407 12655 2.159653 CGTAGTGATGCTTGTTGCCTTC 60.160 50.000 0.00 0.00 42.00 3.46
8411 12659 1.394917 CTCCGTAGTGATGCTTGTTGC 59.605 52.381 0.00 0.00 43.25 4.17
8412 12660 1.394917 GCTCCGTAGTGATGCTTGTTG 59.605 52.381 0.00 0.00 0.00 3.33
8415 12663 0.176680 AGGCTCCGTAGTGATGCTTG 59.823 55.000 0.00 0.00 0.00 4.01
8450 12698 8.347771 CAACTTCAACTCTTCATGATTTCTTCA 58.652 33.333 0.00 0.00 39.12 3.02
8452 12700 8.133627 CACAACTTCAACTCTTCATGATTTCTT 58.866 33.333 0.00 0.00 0.00 2.52
8458 12706 7.282901 TCAAATCACAACTTCAACTCTTCATGA 59.717 33.333 0.00 0.00 0.00 3.07
8461 12709 6.456853 CGTCAAATCACAACTTCAACTCTTCA 60.457 38.462 0.00 0.00 0.00 3.02
8463 12711 5.584649 TCGTCAAATCACAACTTCAACTCTT 59.415 36.000 0.00 0.00 0.00 2.85
8468 12716 5.336744 GGTTTCGTCAAATCACAACTTCAA 58.663 37.500 0.00 0.00 0.00 2.69
8486 12734 0.933047 GTTTTGGAGCGCACGGTTTC 60.933 55.000 11.47 0.00 0.00 2.78
8488 12736 2.719354 GTTTTGGAGCGCACGGTT 59.281 55.556 11.47 0.00 0.00 4.44
8499 12747 0.821711 TCCTGAAGGCACCGTTTTGG 60.822 55.000 0.00 0.00 38.43 3.28
8503 12751 4.800554 CTTCCTGAAGGCACCGTT 57.199 55.556 0.00 0.00 34.87 4.44
8527 12775 2.304470 TGATCTTTGGATTGGACGGTGA 59.696 45.455 0.00 0.00 31.46 4.02
8532 12780 7.161773 TGAAAATCTGATCTTTGGATTGGAC 57.838 36.000 0.00 0.00 31.46 4.02
8534 12782 7.208080 GGATGAAAATCTGATCTTTGGATTGG 58.792 38.462 0.00 0.00 31.46 3.16
8535 12783 6.916387 CGGATGAAAATCTGATCTTTGGATTG 59.084 38.462 0.00 0.00 31.46 2.67
8537 12785 5.533903 CCGGATGAAAATCTGATCTTTGGAT 59.466 40.000 0.00 0.00 34.45 3.41
8538 12786 4.883585 CCGGATGAAAATCTGATCTTTGGA 59.116 41.667 0.00 0.00 0.00 3.53
8540 12788 5.505324 GCTCCGGATGAAAATCTGATCTTTG 60.505 44.000 3.57 0.00 0.00 2.77
8541 12789 4.578105 GCTCCGGATGAAAATCTGATCTTT 59.422 41.667 3.57 0.00 0.00 2.52
8542 12790 4.133078 GCTCCGGATGAAAATCTGATCTT 58.867 43.478 3.57 0.00 0.00 2.40
8543 12791 3.135348 TGCTCCGGATGAAAATCTGATCT 59.865 43.478 3.57 0.00 0.00 2.75
8544 12792 3.249559 GTGCTCCGGATGAAAATCTGATC 59.750 47.826 3.57 0.00 0.00 2.92
8545 12793 3.209410 GTGCTCCGGATGAAAATCTGAT 58.791 45.455 3.57 0.00 0.00 2.90
8546 12794 2.027285 TGTGCTCCGGATGAAAATCTGA 60.027 45.455 3.57 0.00 0.00 3.27
8548 12796 2.749621 GTTGTGCTCCGGATGAAAATCT 59.250 45.455 3.57 0.00 0.00 2.40
8549 12797 2.487762 TGTTGTGCTCCGGATGAAAATC 59.512 45.455 3.57 0.00 0.00 2.17
8582 12844 3.007506 TCTTGAAGTCTCCATTGCGGTTA 59.992 43.478 0.00 0.00 35.57 2.85
8587 12849 2.163211 GGCTTCTTGAAGTCTCCATTGC 59.837 50.000 11.41 0.00 0.00 3.56
8591 12853 1.000955 GTCGGCTTCTTGAAGTCTCCA 59.999 52.381 12.31 0.00 0.00 3.86
8593 12855 1.068472 TCGTCGGCTTCTTGAAGTCTC 60.068 52.381 12.31 5.53 0.00 3.36
8598 12860 2.019951 GCGTCGTCGGCTTCTTGAA 61.020 57.895 3.90 0.00 37.56 2.69
8607 12869 3.708734 GTTTGTGGGCGTCGTCGG 61.709 66.667 3.90 0.00 37.56 4.79
8608 12870 4.054455 CGTTTGTGGGCGTCGTCG 62.054 66.667 0.00 0.00 40.37 5.12
8622 12884 3.853597 GACCGACGAAGGTGGCGTT 62.854 63.158 10.97 0.00 46.09 4.84
8623 12885 4.353437 GACCGACGAAGGTGGCGT 62.353 66.667 10.97 0.00 46.09 5.68
8646 12908 3.315470 GGGTGAAAACTCTGTCTGGTTTC 59.685 47.826 0.00 0.00 35.02 2.78
8648 12910 2.422945 GGGGTGAAAACTCTGTCTGGTT 60.423 50.000 0.00 0.00 0.00 3.67
8658 12920 0.396974 TGCTTGCTGGGGTGAAAACT 60.397 50.000 0.00 0.00 0.00 2.66
8659 12921 0.681175 ATGCTTGCTGGGGTGAAAAC 59.319 50.000 0.00 0.00 0.00 2.43
8670 12932 0.462759 GAAGGCGGAGTATGCTTGCT 60.463 55.000 8.45 0.00 0.00 3.91
8672 12934 0.179111 TCGAAGGCGGAGTATGCTTG 60.179 55.000 0.00 0.00 38.28 4.01
8679 12941 0.683504 ACCTGTATCGAAGGCGGAGT 60.684 55.000 1.37 0.00 38.48 3.85
8684 12946 1.090052 GCCACACCTGTATCGAAGGC 61.090 60.000 1.37 0.00 38.48 4.35
8692 12954 1.051556 TGTGTCTGGCCACACCTGTA 61.052 55.000 20.49 2.69 45.32 2.74
8694 12956 2.510411 TGTGTCTGGCCACACCTG 59.490 61.111 20.49 3.38 45.32 4.00
8700 12962 0.035152 GTGATCCATGTGTCTGGCCA 60.035 55.000 4.71 4.71 36.16 5.36
8703 12965 1.376543 GCTGTGATCCATGTGTCTGG 58.623 55.000 0.00 0.00 37.66 3.86
8707 12969 1.888512 GTTTGGCTGTGATCCATGTGT 59.111 47.619 0.00 0.00 32.92 3.72
8716 12978 2.904866 GGCGGTGTTTGGCTGTGA 60.905 61.111 0.00 0.00 0.00 3.58
8718 12980 3.216292 GTGGCGGTGTTTGGCTGT 61.216 61.111 0.00 0.00 0.00 4.40
8719 12981 3.198236 CTGTGGCGGTGTTTGGCTG 62.198 63.158 0.00 0.00 0.00 4.85
8724 12986 0.818040 GACCTTCTGTGGCGGTGTTT 60.818 55.000 0.00 0.00 0.00 2.83
8736 12998 0.883370 GGTTGGCGTTTCGACCTTCT 60.883 55.000 0.00 0.00 38.02 2.85
8739 13001 1.890510 GTGGTTGGCGTTTCGACCT 60.891 57.895 11.38 0.00 40.91 3.85
8740 13002 2.635338 GTGGTTGGCGTTTCGACC 59.365 61.111 0.00 5.41 40.74 4.79
8753 13015 2.780924 ATGTGGGGGTGTGGTGGT 60.781 61.111 0.00 0.00 0.00 4.16
8755 13017 2.283101 CCATGTGGGGGTGTGGTG 60.283 66.667 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.