Multiple sequence alignment - TraesCS7D01G190000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G190000 chr7D 100.000 7045 0 0 1 7045 143998054 143991010 0.000000e+00 13010.0
1 TraesCS7D01G190000 chr7D 98.126 427 6 2 1 427 143571041 143571465 0.000000e+00 743.0
2 TraesCS7D01G190000 chr7D 98.122 426 7 1 1 426 145495760 145496184 0.000000e+00 741.0
3 TraesCS7D01G190000 chr7A 94.196 3756 141 22 1546 5268 145489034 145492745 0.000000e+00 5657.0
4 TraesCS7D01G190000 chr7A 92.211 950 35 7 489 1405 145488037 145488980 0.000000e+00 1308.0
5 TraesCS7D01G190000 chr7A 90.569 721 33 9 5853 6543 145493253 145493968 0.000000e+00 922.0
6 TraesCS7D01G190000 chr7A 93.281 506 19 8 5337 5836 145492780 145493276 0.000000e+00 732.0
7 TraesCS7D01G190000 chr7A 89.252 428 38 5 1 427 366840958 366841378 4.840000e-146 529.0
8 TraesCS7D01G190000 chr7A 89.150 341 18 11 6685 7024 145493963 145494285 2.370000e-109 407.0
9 TraesCS7D01G190000 chr7B 93.420 2629 129 21 2540 5154 107645422 107648020 0.000000e+00 3856.0
10 TraesCS7D01G190000 chr7B 93.891 1686 48 19 5364 7032 107648284 107649931 0.000000e+00 2492.0
11 TraesCS7D01G190000 chr7B 94.567 589 23 2 1972 2559 107644764 107645344 0.000000e+00 902.0
12 TraesCS7D01G190000 chr7B 94.296 561 18 4 930 1483 107643753 107644306 0.000000e+00 846.0
13 TraesCS7D01G190000 chr7B 93.976 332 14 3 1541 1869 107644303 107644631 1.360000e-136 497.0
14 TraesCS7D01G190000 chr7B 84.524 252 24 7 2345 2588 663106108 663106352 1.180000e-57 235.0
15 TraesCS7D01G190000 chr7B 86.603 209 11 4 681 888 107641526 107641718 1.540000e-51 215.0
16 TraesCS7D01G190000 chr7B 90.506 158 12 2 503 660 107634045 107634199 9.260000e-49 206.0
17 TraesCS7D01G190000 chr7B 79.853 273 43 6 2316 2587 62819370 62819109 9.330000e-44 189.0
18 TraesCS7D01G190000 chr7B 89.231 130 9 3 5154 5280 107648117 107648244 2.630000e-34 158.0
19 TraesCS7D01G190000 chr4B 93.017 401 22 5 38 438 119599025 119599419 1.320000e-161 580.0
20 TraesCS7D01G190000 chr4B 87.586 145 18 0 2433 2577 405339903 405339759 1.220000e-37 169.0
21 TraesCS7D01G190000 chr4D 88.967 426 37 7 5 428 92308501 92308918 1.050000e-142 518.0
22 TraesCS7D01G190000 chr6B 93.623 345 15 5 84 427 218031605 218031943 6.300000e-140 508.0
23 TraesCS7D01G190000 chr6B 97.872 47 0 1 1 47 218031562 218031607 5.860000e-11 80.5
24 TraesCS7D01G190000 chr2A 85.263 285 29 6 2309 2589 194713127 194713402 1.500000e-71 281.0
25 TraesCS7D01G190000 chr4A 85.502 269 22 6 2319 2587 352482005 352481754 1.510000e-66 265.0
26 TraesCS7D01G190000 chr4A 95.652 46 1 1 386 431 725543499 725543543 9.800000e-09 73.1
27 TraesCS7D01G190000 chr2D 85.714 259 28 7 2319 2577 119097225 119096976 1.510000e-66 265.0
28 TraesCS7D01G190000 chr2D 88.000 75 5 3 6572 6643 617101161 617101234 1.260000e-12 86.1
29 TraesCS7D01G190000 chr1D 80.524 267 39 13 2319 2583 2227035 2227290 7.210000e-45 193.0
30 TraesCS7D01G190000 chr5A 79.336 271 46 10 2319 2588 468871960 468872221 1.560000e-41 182.0
31 TraesCS7D01G190000 chr5A 98.113 53 1 0 6572 6624 670825910 670825962 7.520000e-15 93.5
32 TraesCS7D01G190000 chr5D 79.528 254 39 10 2319 2571 385977530 385977289 1.220000e-37 169.0
33 TraesCS7D01G190000 chr5D 89.552 67 6 1 6572 6638 204323332 204323397 4.530000e-12 84.2
34 TraesCS7D01G190000 chr3B 93.443 61 4 0 6575 6635 106421243 106421183 2.710000e-14 91.6
35 TraesCS7D01G190000 chr3B 94.737 57 3 0 6575 6631 141862336 141862280 9.730000e-14 89.8
36 TraesCS7D01G190000 chr5B 94.828 58 2 1 6572 6629 155715167 155715223 9.730000e-14 89.8
37 TraesCS7D01G190000 chr3D 94.737 57 3 0 6575 6631 92123172 92123116 9.730000e-14 89.8
38 TraesCS7D01G190000 chr3D 94.737 57 3 0 6575 6631 92358064 92358008 9.730000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G190000 chr7D 143991010 143998054 7044 True 13010.000000 13010 100.000000 1 7045 1 chr7D.!!$R1 7044
1 TraesCS7D01G190000 chr7A 145488037 145494285 6248 False 1805.200000 5657 91.881400 489 7024 5 chr7A.!!$F2 6535
2 TraesCS7D01G190000 chr7B 107641526 107649931 8405 False 1280.857143 3856 92.283429 681 7032 7 chr7B.!!$F3 6351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 402 0.042448 CGTAAATTTCTAGCCCGCGC 60.042 55.0 0.00 0.0 0.00 6.86 F
406 407 0.381801 ATTTCTAGCCCGCGCAATTG 59.618 50.0 8.75 0.0 37.52 2.32 F
1843 3872 0.249405 TTTTGGTACGGCGAACTCGT 60.249 50.0 16.62 0.0 43.64 4.18 F
2310 4370 0.766131 TCGGTAAGCCTGGAAACCAA 59.234 50.0 0.00 0.0 30.80 3.67 F
4107 6292 1.084289 CCGTCCGAAATCCAAGGTTC 58.916 55.0 0.00 0.0 0.00 3.62 F
4834 7022 0.107993 TCATCAGAGCAGCCTTTCCG 60.108 55.0 0.00 0.0 0.00 4.30 F
4897 7085 0.604780 GAAGAGCAGCAGCACCTTGA 60.605 55.0 12.14 0.0 45.49 3.02 F
5146 7335 0.982852 CCAGGACTATCCCCAGCACA 60.983 60.0 0.00 0.0 37.19 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 3511 0.749649 TGCGGGAAGTGCATTTTTGT 59.250 45.000 0.00 0.00 37.44 2.83 R
1890 3919 1.204146 GCAACAGGTATCCTCTCCCA 58.796 55.000 0.00 0.00 0.00 4.37 R
3428 5607 0.252012 CCCAGGTTGGTTGCCCATTA 60.252 55.000 0.00 0.00 41.49 1.90 R
4309 6494 0.179009 TTGCACTGCCAAGCTTCTCT 60.179 50.000 0.00 0.00 0.00 3.10 R
5323 7612 0.381801 AAAGCAGCAATTATCGCCGG 59.618 50.000 0.00 0.00 0.00 6.13 R
5790 8096 0.394899 GAAAGGCAGGGATCCAGTGG 60.395 60.000 15.23 1.40 0.00 4.00 R
5791 8097 0.622665 AGAAAGGCAGGGATCCAGTG 59.377 55.000 15.23 11.49 0.00 3.66 R
6225 8534 2.975266 ACAGTGGAACGTTGTTACACA 58.025 42.857 22.96 3.14 45.86 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.509418 GTTTACTGATGGTTCTTGGCATAA 57.491 37.500 0.00 0.00 0.00 1.90
24 25 7.100458 GTTTACTGATGGTTCTTGGCATAAT 57.900 36.000 0.00 0.00 0.00 1.28
25 26 8.220755 GTTTACTGATGGTTCTTGGCATAATA 57.779 34.615 0.00 0.00 0.00 0.98
26 27 8.850156 GTTTACTGATGGTTCTTGGCATAATAT 58.150 33.333 0.00 0.00 0.00 1.28
27 28 8.995027 TTACTGATGGTTCTTGGCATAATATT 57.005 30.769 0.00 0.00 0.00 1.28
28 29 7.902920 ACTGATGGTTCTTGGCATAATATTT 57.097 32.000 0.00 0.00 0.00 1.40
29 30 7.719483 ACTGATGGTTCTTGGCATAATATTTG 58.281 34.615 0.00 0.00 0.00 2.32
30 31 7.560991 ACTGATGGTTCTTGGCATAATATTTGA 59.439 33.333 0.00 0.00 0.00 2.69
31 32 7.715657 TGATGGTTCTTGGCATAATATTTGAC 58.284 34.615 0.00 0.00 0.00 3.18
32 33 7.341512 TGATGGTTCTTGGCATAATATTTGACA 59.658 33.333 0.00 0.00 0.00 3.58
33 34 7.658525 TGGTTCTTGGCATAATATTTGACAT 57.341 32.000 6.91 0.00 30.69 3.06
34 35 7.490840 TGGTTCTTGGCATAATATTTGACATG 58.509 34.615 6.91 8.90 30.69 3.21
35 36 7.341512 TGGTTCTTGGCATAATATTTGACATGA 59.658 33.333 0.00 13.31 35.25 3.07
36 37 7.649306 GGTTCTTGGCATAATATTTGACATGAC 59.351 37.037 15.36 7.74 36.38 3.06
37 38 7.878547 TCTTGGCATAATATTTGACATGACA 57.121 32.000 0.00 8.43 32.93 3.58
38 39 8.291191 TCTTGGCATAATATTTGACATGACAA 57.709 30.769 13.92 13.92 42.61 3.18
40 41 7.643569 TGGCATAATATTTGACATGACAAGT 57.356 32.000 10.38 10.38 33.53 3.16
41 42 7.482474 TGGCATAATATTTGACATGACAAGTG 58.518 34.615 14.34 8.01 33.53 3.16
42 43 7.122501 TGGCATAATATTTGACATGACAAGTGT 59.877 33.333 14.34 6.53 33.53 3.55
43 44 7.975616 GGCATAATATTTGACATGACAAGTGTT 59.024 33.333 16.02 16.02 0.00 3.32
44 45 9.357652 GCATAATATTTGACATGACAAGTGTTT 57.642 29.630 16.66 11.91 0.00 2.83
46 47 9.859427 ATAATATTTGACATGACAAGTGTTTGG 57.141 29.630 16.66 0.00 38.66 3.28
47 48 5.596836 ATTTGACATGACAAGTGTTTGGT 57.403 34.783 10.38 0.00 38.66 3.67
48 49 5.398603 TTTGACATGACAAGTGTTTGGTT 57.601 34.783 10.38 0.00 38.66 3.67
49 50 6.516739 TTTGACATGACAAGTGTTTGGTTA 57.483 33.333 10.38 0.00 38.66 2.85
50 51 6.516739 TTGACATGACAAGTGTTTGGTTAA 57.483 33.333 6.51 0.00 38.66 2.01
51 52 6.130298 TGACATGACAAGTGTTTGGTTAAG 57.870 37.500 0.00 0.00 38.66 1.85
52 53 4.932146 ACATGACAAGTGTTTGGTTAAGC 58.068 39.130 0.00 0.00 38.66 3.09
53 54 4.644685 ACATGACAAGTGTTTGGTTAAGCT 59.355 37.500 0.00 0.00 38.66 3.74
54 55 5.127031 ACATGACAAGTGTTTGGTTAAGCTT 59.873 36.000 3.48 3.48 38.66 3.74
55 56 6.320164 ACATGACAAGTGTTTGGTTAAGCTTA 59.680 34.615 0.86 0.86 38.66 3.09
56 57 6.126568 TGACAAGTGTTTGGTTAAGCTTAC 57.873 37.500 5.45 1.71 38.66 2.34
57 58 5.648526 TGACAAGTGTTTGGTTAAGCTTACA 59.351 36.000 5.45 0.00 38.66 2.41
58 59 5.886992 ACAAGTGTTTGGTTAAGCTTACAC 58.113 37.500 23.36 23.36 38.66 2.90
59 60 5.650703 ACAAGTGTTTGGTTAAGCTTACACT 59.349 36.000 25.76 25.76 45.71 3.55
60 61 6.183360 ACAAGTGTTTGGTTAAGCTTACACTC 60.183 38.462 28.65 14.16 43.72 3.51
61 62 5.433526 AGTGTTTGGTTAAGCTTACACTCA 58.566 37.500 25.76 12.13 41.53 3.41
62 63 5.296035 AGTGTTTGGTTAAGCTTACACTCAC 59.704 40.000 25.76 17.25 41.53 3.51
63 64 5.065474 GTGTTTGGTTAAGCTTACACTCACA 59.935 40.000 23.44 10.43 34.56 3.58
64 65 5.825679 TGTTTGGTTAAGCTTACACTCACAT 59.174 36.000 5.45 0.00 0.00 3.21
65 66 6.993308 TGTTTGGTTAAGCTTACACTCACATA 59.007 34.615 5.45 0.00 0.00 2.29
66 67 7.663905 TGTTTGGTTAAGCTTACACTCACATAT 59.336 33.333 5.45 0.00 0.00 1.78
67 68 9.158233 GTTTGGTTAAGCTTACACTCACATATA 57.842 33.333 5.45 0.00 0.00 0.86
68 69 9.727859 TTTGGTTAAGCTTACACTCACATATAA 57.272 29.630 5.45 0.00 0.00 0.98
69 70 8.712285 TGGTTAAGCTTACACTCACATATAAC 57.288 34.615 5.45 0.00 0.00 1.89
70 71 8.537016 TGGTTAAGCTTACACTCACATATAACT 58.463 33.333 5.45 0.00 0.00 2.24
71 72 9.379791 GGTTAAGCTTACACTCACATATAACTT 57.620 33.333 5.45 0.00 0.00 2.66
81 82 9.102757 ACACTCACATATAACTTAAAGATGCAG 57.897 33.333 0.00 0.00 0.00 4.41
82 83 9.317936 CACTCACATATAACTTAAAGATGCAGA 57.682 33.333 0.00 0.00 0.00 4.26
85 86 9.276590 TCACATATAACTTAAAGATGCAGATGG 57.723 33.333 0.00 0.00 0.00 3.51
86 87 9.276590 CACATATAACTTAAAGATGCAGATGGA 57.723 33.333 0.00 0.00 0.00 3.41
94 95 9.412460 ACTTAAAGATGCAGATGGATTTAATGA 57.588 29.630 0.00 0.00 0.00 2.57
97 98 8.707796 AAAGATGCAGATGGATTTAATGATCT 57.292 30.769 0.00 0.00 0.00 2.75
98 99 7.689446 AGATGCAGATGGATTTAATGATCTG 57.311 36.000 14.55 14.55 43.14 2.90
99 100 7.459234 AGATGCAGATGGATTTAATGATCTGA 58.541 34.615 19.67 10.35 42.99 3.27
100 101 8.110271 AGATGCAGATGGATTTAATGATCTGAT 58.890 33.333 19.67 13.06 42.99 2.90
101 102 7.448748 TGCAGATGGATTTAATGATCTGATG 57.551 36.000 19.67 3.80 42.99 3.07
102 103 6.433093 TGCAGATGGATTTAATGATCTGATGG 59.567 38.462 19.67 2.91 42.99 3.51
103 104 6.433404 GCAGATGGATTTAATGATCTGATGGT 59.567 38.462 19.67 0.00 42.99 3.55
104 105 7.609146 GCAGATGGATTTAATGATCTGATGGTA 59.391 37.037 19.67 0.00 42.99 3.25
105 106 9.682465 CAGATGGATTTAATGATCTGATGGTAT 57.318 33.333 14.02 0.00 42.99 2.73
172 173 8.985315 ATATTTTCTCTGCTATGGACAATCAA 57.015 30.769 0.00 0.00 0.00 2.57
173 174 7.707624 ATTTTCTCTGCTATGGACAATCAAA 57.292 32.000 0.00 0.00 0.00 2.69
174 175 6.500684 TTTCTCTGCTATGGACAATCAAAC 57.499 37.500 0.00 0.00 0.00 2.93
175 176 5.426689 TCTCTGCTATGGACAATCAAACT 57.573 39.130 0.00 0.00 0.00 2.66
176 177 6.544928 TCTCTGCTATGGACAATCAAACTA 57.455 37.500 0.00 0.00 0.00 2.24
177 178 6.946340 TCTCTGCTATGGACAATCAAACTAA 58.054 36.000 0.00 0.00 0.00 2.24
178 179 7.394016 TCTCTGCTATGGACAATCAAACTAAA 58.606 34.615 0.00 0.00 0.00 1.85
179 180 8.049117 TCTCTGCTATGGACAATCAAACTAAAT 58.951 33.333 0.00 0.00 0.00 1.40
180 181 8.579850 TCTGCTATGGACAATCAAACTAAATT 57.420 30.769 0.00 0.00 0.00 1.82
181 182 8.461222 TCTGCTATGGACAATCAAACTAAATTG 58.539 33.333 0.00 0.00 38.54 2.32
182 183 8.121305 TGCTATGGACAATCAAACTAAATTGT 57.879 30.769 0.65 0.65 46.07 2.71
183 184 8.584157 TGCTATGGACAATCAAACTAAATTGTT 58.416 29.630 2.60 0.00 44.06 2.83
188 189 9.906660 TGGACAATCAAACTAAATTGTTACATC 57.093 29.630 2.60 0.00 44.06 3.06
216 217 7.835634 AGTAATAGTTCTACTTTCTGCTTGC 57.164 36.000 0.00 0.00 0.00 4.01
217 218 7.386851 AGTAATAGTTCTACTTTCTGCTTGCA 58.613 34.615 0.00 0.00 0.00 4.08
218 219 7.878127 AGTAATAGTTCTACTTTCTGCTTGCAA 59.122 33.333 0.00 0.00 0.00 4.08
219 220 4.820284 AGTTCTACTTTCTGCTTGCAAC 57.180 40.909 0.00 0.00 0.00 4.17
220 221 3.565902 AGTTCTACTTTCTGCTTGCAACC 59.434 43.478 0.00 0.00 0.00 3.77
221 222 3.207265 TCTACTTTCTGCTTGCAACCA 57.793 42.857 0.00 0.00 0.00 3.67
222 223 3.754965 TCTACTTTCTGCTTGCAACCAT 58.245 40.909 0.00 0.00 0.00 3.55
223 224 4.905429 TCTACTTTCTGCTTGCAACCATA 58.095 39.130 0.00 0.00 0.00 2.74
224 225 5.500234 TCTACTTTCTGCTTGCAACCATAT 58.500 37.500 0.00 0.00 0.00 1.78
225 226 5.945784 TCTACTTTCTGCTTGCAACCATATT 59.054 36.000 0.00 0.00 0.00 1.28
226 227 5.473066 ACTTTCTGCTTGCAACCATATTT 57.527 34.783 0.00 0.00 0.00 1.40
227 228 5.232463 ACTTTCTGCTTGCAACCATATTTG 58.768 37.500 0.00 0.00 0.00 2.32
228 229 5.010922 ACTTTCTGCTTGCAACCATATTTGA 59.989 36.000 0.00 0.00 0.00 2.69
229 230 4.707030 TCTGCTTGCAACCATATTTGAG 57.293 40.909 0.00 0.00 0.00 3.02
230 231 4.334552 TCTGCTTGCAACCATATTTGAGA 58.665 39.130 0.00 0.00 0.00 3.27
231 232 4.766373 TCTGCTTGCAACCATATTTGAGAA 59.234 37.500 0.00 0.00 0.00 2.87
232 233 5.243507 TCTGCTTGCAACCATATTTGAGAAA 59.756 36.000 0.00 0.00 0.00 2.52
233 234 6.040209 TGCTTGCAACCATATTTGAGAAAT 57.960 33.333 0.00 0.00 34.90 2.17
234 235 6.465948 TGCTTGCAACCATATTTGAGAAATT 58.534 32.000 0.00 0.00 32.38 1.82
235 236 6.935771 TGCTTGCAACCATATTTGAGAAATTT 59.064 30.769 0.00 0.00 32.38 1.82
236 237 7.118101 TGCTTGCAACCATATTTGAGAAATTTC 59.882 33.333 10.33 10.33 32.38 2.17
237 238 7.413328 GCTTGCAACCATATTTGAGAAATTTCC 60.413 37.037 14.61 7.09 32.38 3.13
238 239 7.243604 TGCAACCATATTTGAGAAATTTCCT 57.756 32.000 14.61 2.40 32.38 3.36
239 240 7.098477 TGCAACCATATTTGAGAAATTTCCTG 58.902 34.615 14.61 2.11 32.38 3.86
240 241 7.039152 TGCAACCATATTTGAGAAATTTCCTGA 60.039 33.333 14.61 0.00 32.38 3.86
241 242 7.818930 GCAACCATATTTGAGAAATTTCCTGAA 59.181 33.333 14.61 7.27 32.38 3.02
242 243 9.143631 CAACCATATTTGAGAAATTTCCTGAAC 57.856 33.333 14.61 2.94 32.38 3.18
243 244 8.421249 ACCATATTTGAGAAATTTCCTGAACA 57.579 30.769 14.61 5.30 32.38 3.18
244 245 9.039165 ACCATATTTGAGAAATTTCCTGAACAT 57.961 29.630 14.61 3.11 32.38 2.71
245 246 9.309516 CCATATTTGAGAAATTTCCTGAACATG 57.690 33.333 14.61 10.72 32.38 3.21
246 247 8.814235 CATATTTGAGAAATTTCCTGAACATGC 58.186 33.333 14.61 0.00 32.38 4.06
247 248 6.409524 TTTGAGAAATTTCCTGAACATGCT 57.590 33.333 14.61 0.00 0.00 3.79
248 249 6.409524 TTGAGAAATTTCCTGAACATGCTT 57.590 33.333 14.61 0.00 0.00 3.91
249 250 6.017400 TGAGAAATTTCCTGAACATGCTTC 57.983 37.500 14.61 2.14 0.00 3.86
250 251 5.771666 TGAGAAATTTCCTGAACATGCTTCT 59.228 36.000 14.61 0.00 0.00 2.85
251 252 6.266103 TGAGAAATTTCCTGAACATGCTTCTT 59.734 34.615 14.61 0.00 0.00 2.52
252 253 7.059202 AGAAATTTCCTGAACATGCTTCTTT 57.941 32.000 14.61 0.00 0.00 2.52
253 254 7.503549 AGAAATTTCCTGAACATGCTTCTTTT 58.496 30.769 14.61 0.00 0.00 2.27
254 255 7.440255 AGAAATTTCCTGAACATGCTTCTTTTG 59.560 33.333 14.61 0.00 0.00 2.44
255 256 5.850557 TTTCCTGAACATGCTTCTTTTGA 57.149 34.783 0.00 0.00 0.00 2.69
256 257 5.443185 TTCCTGAACATGCTTCTTTTGAG 57.557 39.130 0.00 0.00 0.00 3.02
257 258 4.717877 TCCTGAACATGCTTCTTTTGAGA 58.282 39.130 0.00 0.00 0.00 3.27
258 259 4.516698 TCCTGAACATGCTTCTTTTGAGAC 59.483 41.667 0.00 0.00 0.00 3.36
259 260 4.276678 CCTGAACATGCTTCTTTTGAGACA 59.723 41.667 0.00 0.00 0.00 3.41
260 261 5.173774 TGAACATGCTTCTTTTGAGACAC 57.826 39.130 0.00 0.00 0.00 3.67
261 262 4.883585 TGAACATGCTTCTTTTGAGACACT 59.116 37.500 0.00 0.00 0.00 3.55
262 263 4.825546 ACATGCTTCTTTTGAGACACTG 57.174 40.909 0.00 0.00 0.00 3.66
263 264 4.454678 ACATGCTTCTTTTGAGACACTGA 58.545 39.130 0.00 0.00 0.00 3.41
264 265 4.883585 ACATGCTTCTTTTGAGACACTGAA 59.116 37.500 0.00 0.00 0.00 3.02
265 266 5.533903 ACATGCTTCTTTTGAGACACTGAAT 59.466 36.000 0.00 0.00 0.00 2.57
266 267 6.712095 ACATGCTTCTTTTGAGACACTGAATA 59.288 34.615 0.00 0.00 0.00 1.75
267 268 6.791887 TGCTTCTTTTGAGACACTGAATAG 57.208 37.500 0.00 0.00 0.00 1.73
268 269 5.180117 TGCTTCTTTTGAGACACTGAATAGC 59.820 40.000 0.00 0.00 0.00 2.97
269 270 5.391416 GCTTCTTTTGAGACACTGAATAGCC 60.391 44.000 0.00 0.00 0.00 3.93
270 271 5.227569 TCTTTTGAGACACTGAATAGCCA 57.772 39.130 0.00 0.00 0.00 4.75
271 272 5.809001 TCTTTTGAGACACTGAATAGCCAT 58.191 37.500 0.00 0.00 0.00 4.40
272 273 6.240894 TCTTTTGAGACACTGAATAGCCATT 58.759 36.000 0.00 0.00 0.00 3.16
273 274 6.716628 TCTTTTGAGACACTGAATAGCCATTT 59.283 34.615 0.00 0.00 0.00 2.32
274 275 6.899393 TTTGAGACACTGAATAGCCATTTT 57.101 33.333 0.00 0.00 0.00 1.82
275 276 6.899393 TTGAGACACTGAATAGCCATTTTT 57.101 33.333 0.00 0.00 0.00 1.94
298 299 9.658799 TTTTTGGTGACATATTTGAGTTTTCAA 57.341 25.926 0.00 0.00 42.32 2.69
302 303 9.829507 TGGTGACATATTTGAGTTTTCAAAATT 57.170 25.926 6.78 0.00 45.22 1.82
314 315 9.657121 TGAGTTTTCAAAATTGTTGTGAAAAAC 57.343 25.926 17.63 15.25 46.90 2.43
315 316 9.657121 GAGTTTTCAAAATTGTTGTGAAAAACA 57.343 25.926 17.63 0.16 46.90 2.83
326 327 8.818141 TTGTTGTGAAAAACAACACTAATTCA 57.182 26.923 20.35 4.92 43.34 2.57
327 328 8.818141 TGTTGTGAAAAACAACACTAATTCAA 57.182 26.923 17.56 0.00 44.97 2.69
328 329 9.429359 TGTTGTGAAAAACAACACTAATTCAAT 57.571 25.926 17.56 0.00 44.97 2.57
383 384 7.715265 ATATTGCCTAAGTAAGACAACATCG 57.285 36.000 0.00 0.00 0.00 3.84
384 385 4.530710 TGCCTAAGTAAGACAACATCGT 57.469 40.909 0.00 0.00 0.00 3.73
385 386 5.648178 TGCCTAAGTAAGACAACATCGTA 57.352 39.130 0.00 0.00 0.00 3.43
386 387 6.028146 TGCCTAAGTAAGACAACATCGTAA 57.972 37.500 0.00 0.00 0.00 3.18
387 388 6.457355 TGCCTAAGTAAGACAACATCGTAAA 58.543 36.000 0.00 0.00 0.00 2.01
388 389 7.101054 TGCCTAAGTAAGACAACATCGTAAAT 58.899 34.615 0.00 0.00 0.00 1.40
389 390 7.604927 TGCCTAAGTAAGACAACATCGTAAATT 59.395 33.333 0.00 0.00 0.00 1.82
390 391 8.448615 GCCTAAGTAAGACAACATCGTAAATTT 58.551 33.333 0.00 0.00 0.00 1.82
391 392 9.968743 CCTAAGTAAGACAACATCGTAAATTTC 57.031 33.333 0.00 0.00 0.00 2.17
395 396 8.870879 AGTAAGACAACATCGTAAATTTCTAGC 58.129 33.333 0.00 0.00 0.00 3.42
396 397 6.663944 AGACAACATCGTAAATTTCTAGCC 57.336 37.500 0.00 0.00 0.00 3.93
397 398 5.585047 AGACAACATCGTAAATTTCTAGCCC 59.415 40.000 0.00 0.00 0.00 5.19
398 399 4.331717 ACAACATCGTAAATTTCTAGCCCG 59.668 41.667 0.00 0.00 0.00 6.13
399 400 2.870411 ACATCGTAAATTTCTAGCCCGC 59.130 45.455 0.00 0.00 0.00 6.13
400 401 1.563111 TCGTAAATTTCTAGCCCGCG 58.437 50.000 0.00 0.00 0.00 6.46
401 402 0.042448 CGTAAATTTCTAGCCCGCGC 60.042 55.000 0.00 0.00 0.00 6.86
402 403 1.011333 GTAAATTTCTAGCCCGCGCA 58.989 50.000 8.75 0.00 37.52 6.09
403 404 1.399089 GTAAATTTCTAGCCCGCGCAA 59.601 47.619 8.75 0.00 37.52 4.85
404 405 1.102978 AAATTTCTAGCCCGCGCAAT 58.897 45.000 8.75 0.00 37.52 3.56
405 406 1.102978 AATTTCTAGCCCGCGCAATT 58.897 45.000 8.75 0.00 37.52 2.32
406 407 0.381801 ATTTCTAGCCCGCGCAATTG 59.618 50.000 8.75 0.00 37.52 2.32
407 408 0.675208 TTTCTAGCCCGCGCAATTGA 60.675 50.000 10.34 0.00 37.52 2.57
408 409 1.089481 TTCTAGCCCGCGCAATTGAG 61.089 55.000 10.34 7.33 37.52 3.02
409 410 3.173390 CTAGCCCGCGCAATTGAGC 62.173 63.158 22.54 22.54 37.52 4.26
417 418 3.064324 GCAATTGAGCGGGCCACT 61.064 61.111 10.34 0.00 0.00 4.00
418 419 2.639327 GCAATTGAGCGGGCCACTT 61.639 57.895 10.34 0.00 0.00 3.16
419 420 1.966762 CAATTGAGCGGGCCACTTT 59.033 52.632 4.39 0.00 0.00 2.66
420 421 0.388907 CAATTGAGCGGGCCACTTTG 60.389 55.000 4.39 0.00 0.00 2.77
421 422 2.158561 AATTGAGCGGGCCACTTTGC 62.159 55.000 4.39 0.00 0.00 3.68
422 423 3.790416 TTGAGCGGGCCACTTTGCT 62.790 57.895 4.39 2.82 41.11 3.91
423 424 2.046314 GAGCGGGCCACTTTGCTA 60.046 61.111 4.39 0.00 37.91 3.49
424 425 2.045926 AGCGGGCCACTTTGCTAG 60.046 61.111 4.39 0.00 35.56 3.42
425 426 2.359975 GCGGGCCACTTTGCTAGT 60.360 61.111 4.39 0.00 37.68 2.57
426 427 1.971695 GCGGGCCACTTTGCTAGTT 60.972 57.895 4.39 0.00 33.85 2.24
427 428 0.675522 GCGGGCCACTTTGCTAGTTA 60.676 55.000 4.39 0.00 33.85 2.24
428 429 1.816074 CGGGCCACTTTGCTAGTTAA 58.184 50.000 4.39 0.00 33.85 2.01
429 430 1.467342 CGGGCCACTTTGCTAGTTAAC 59.533 52.381 4.39 0.00 33.85 2.01
430 431 2.791655 GGGCCACTTTGCTAGTTAACT 58.208 47.619 13.68 13.68 33.85 2.24
431 432 3.154710 GGGCCACTTTGCTAGTTAACTT 58.845 45.455 14.49 0.00 33.85 2.66
432 433 4.329392 GGGCCACTTTGCTAGTTAACTTA 58.671 43.478 14.49 0.00 33.85 2.24
433 434 4.763279 GGGCCACTTTGCTAGTTAACTTAA 59.237 41.667 14.49 4.62 33.85 1.85
434 435 5.242171 GGGCCACTTTGCTAGTTAACTTAAA 59.758 40.000 14.49 11.72 33.85 1.52
435 436 6.239092 GGGCCACTTTGCTAGTTAACTTAAAA 60.239 38.462 14.49 10.82 33.85 1.52
436 437 6.861572 GGCCACTTTGCTAGTTAACTTAAAAG 59.138 38.462 22.77 22.77 33.85 2.27
437 438 7.255346 GGCCACTTTGCTAGTTAACTTAAAAGA 60.255 37.037 27.13 8.26 33.85 2.52
438 439 8.132995 GCCACTTTGCTAGTTAACTTAAAAGAA 58.867 33.333 27.13 10.57 33.85 2.52
453 454 9.448438 AACTTAAAAGAAAAAGAAACATTGCCT 57.552 25.926 0.00 0.00 0.00 4.75
454 455 8.882736 ACTTAAAAGAAAAAGAAACATTGCCTG 58.117 29.630 0.00 0.00 0.00 4.85
455 456 8.785329 TTAAAAGAAAAAGAAACATTGCCTGT 57.215 26.923 0.00 0.00 40.84 4.00
456 457 9.877178 TTAAAAGAAAAAGAAACATTGCCTGTA 57.123 25.926 0.00 0.00 36.98 2.74
457 458 7.770801 AAAGAAAAAGAAACATTGCCTGTAC 57.229 32.000 0.00 0.00 36.98 2.90
458 459 6.715347 AGAAAAAGAAACATTGCCTGTACT 57.285 33.333 0.00 0.00 36.98 2.73
459 460 7.112452 AGAAAAAGAAACATTGCCTGTACTT 57.888 32.000 0.00 0.00 36.98 2.24
460 461 7.555965 AGAAAAAGAAACATTGCCTGTACTTT 58.444 30.769 11.84 11.84 41.74 2.66
461 462 8.040727 AGAAAAAGAAACATTGCCTGTACTTTT 58.959 29.630 17.85 17.85 45.53 2.27
462 463 8.560355 AAAAAGAAACATTGCCTGTACTTTTT 57.440 26.923 22.77 22.77 45.91 1.94
481 482 3.694535 TTTGACCGTAAAACATTGCGT 57.305 38.095 0.00 0.00 0.00 5.24
482 483 2.672188 TGACCGTAAAACATTGCGTG 57.328 45.000 0.00 0.00 0.00 5.34
483 484 1.941294 TGACCGTAAAACATTGCGTGT 59.059 42.857 0.00 0.00 44.84 4.49
484 485 3.129109 TGACCGTAAAACATTGCGTGTA 58.871 40.909 0.00 0.00 41.14 2.90
485 486 3.059733 TGACCGTAAAACATTGCGTGTAC 60.060 43.478 0.00 0.00 41.14 2.90
486 487 3.132925 ACCGTAAAACATTGCGTGTACT 58.867 40.909 0.00 0.00 41.14 2.73
487 488 4.305769 ACCGTAAAACATTGCGTGTACTA 58.694 39.130 0.00 0.00 41.14 1.82
522 523 2.210116 GAGAACGAACTTGCTTGTCCA 58.790 47.619 0.00 0.00 0.00 4.02
523 524 2.808543 GAGAACGAACTTGCTTGTCCAT 59.191 45.455 0.00 0.00 0.00 3.41
530 531 0.804364 CTTGCTTGTCCATTAGCGCA 59.196 50.000 11.47 0.00 40.26 6.09
531 532 1.199789 CTTGCTTGTCCATTAGCGCAA 59.800 47.619 11.47 1.85 40.26 4.85
584 585 3.917072 AGGTGGAAAAGCTCTCGTC 57.083 52.632 0.00 0.00 27.29 4.20
617 618 2.207229 GCAACCACCCCTCAAACCC 61.207 63.158 0.00 0.00 0.00 4.11
676 677 4.720902 CGGTGCCCATCAGCCACA 62.721 66.667 0.00 0.00 39.94 4.17
714 715 1.289109 AATCAAACGCCGACCACGAG 61.289 55.000 0.00 0.00 42.66 4.18
715 716 2.430382 ATCAAACGCCGACCACGAGT 62.430 55.000 0.00 0.00 42.66 4.18
716 717 1.372004 CAAACGCCGACCACGAGTA 60.372 57.895 0.00 0.00 42.66 2.59
717 718 1.372128 AAACGCCGACCACGAGTAC 60.372 57.895 0.00 0.00 42.66 2.73
718 719 3.599792 AACGCCGACCACGAGTACG 62.600 63.158 0.00 0.00 42.66 3.67
799 801 2.357836 CCTCCATGCTTGCCCACT 59.642 61.111 0.00 0.00 0.00 4.00
800 802 1.751927 CCTCCATGCTTGCCCACTC 60.752 63.158 0.00 0.00 0.00 3.51
805 807 1.376424 ATGCTTGCCCACTCACGAG 60.376 57.895 0.00 0.00 0.00 4.18
871 873 3.055167 CACAGGTCCCACATGTCATCTTA 60.055 47.826 0.00 0.00 41.60 2.10
884 886 3.197766 TGTCATCTTAACAGGCCACCTAG 59.802 47.826 5.01 0.00 29.64 3.02
885 887 3.451178 GTCATCTTAACAGGCCACCTAGA 59.549 47.826 5.01 0.82 29.64 2.43
906 916 1.324005 CCTCCTCGGGAACTCCACTC 61.324 65.000 0.00 0.00 37.91 3.51
912 922 1.392710 CGGGAACTCCACTCGCCTAT 61.393 60.000 0.00 0.00 37.91 2.57
915 925 1.614413 GGAACTCCACTCGCCTATAGG 59.386 57.143 15.01 15.01 35.64 2.57
996 2992 1.372128 CCAAAAAGAGGCACGCAGC 60.372 57.895 0.00 0.00 44.65 5.25
1425 3447 5.373222 TGTATTTAAGTCAGCTGTTGGTGT 58.627 37.500 14.67 0.00 41.91 4.16
1426 3448 6.526526 TGTATTTAAGTCAGCTGTTGGTGTA 58.473 36.000 14.67 0.00 41.91 2.90
1427 3449 5.941948 ATTTAAGTCAGCTGTTGGTGTAC 57.058 39.130 14.67 2.17 41.91 2.90
1428 3450 1.865865 AAGTCAGCTGTTGGTGTACG 58.134 50.000 14.67 0.00 41.91 3.67
1429 3451 0.750850 AGTCAGCTGTTGGTGTACGT 59.249 50.000 14.67 0.00 41.91 3.57
1430 3452 0.859232 GTCAGCTGTTGGTGTACGTG 59.141 55.000 14.67 0.00 41.91 4.49
1471 3494 6.192863 CGTACGTTGTACTATACTTCGTTTCC 59.807 42.308 7.22 4.14 38.61 3.13
1472 3495 6.012658 ACGTTGTACTATACTTCGTTTCCA 57.987 37.500 0.00 0.00 36.17 3.53
1473 3496 6.624423 ACGTTGTACTATACTTCGTTTCCAT 58.376 36.000 0.00 0.00 36.17 3.41
1479 3502 8.525316 TGTACTATACTTCGTTTCCATCTTTGA 58.475 33.333 0.00 0.00 0.00 2.69
1480 3503 9.362539 GTACTATACTTCGTTTCCATCTTTGAA 57.637 33.333 0.00 0.00 0.00 2.69
1481 3504 8.842358 ACTATACTTCGTTTCCATCTTTGAAA 57.158 30.769 0.00 0.00 0.00 2.69
1482 3505 9.280174 ACTATACTTCGTTTCCATCTTTGAAAA 57.720 29.630 0.00 0.00 33.80 2.29
1483 3506 9.543018 CTATACTTCGTTTCCATCTTTGAAAAC 57.457 33.333 0.00 0.00 33.80 2.43
1484 3507 6.202516 ACTTCGTTTCCATCTTTGAAAACA 57.797 33.333 0.00 0.00 33.80 2.83
1485 3508 6.626302 ACTTCGTTTCCATCTTTGAAAACAA 58.374 32.000 0.00 0.00 33.80 2.83
1486 3509 7.093992 ACTTCGTTTCCATCTTTGAAAACAAA 58.906 30.769 0.00 0.00 33.80 2.83
1487 3510 7.600752 ACTTCGTTTCCATCTTTGAAAACAAAA 59.399 29.630 0.00 0.00 33.80 2.44
1488 3511 7.891183 TCGTTTCCATCTTTGAAAACAAAAA 57.109 28.000 0.00 0.00 33.80 1.94
1489 3512 7.734554 TCGTTTCCATCTTTGAAAACAAAAAC 58.265 30.769 0.00 0.00 33.80 2.43
1490 3513 7.385205 TCGTTTCCATCTTTGAAAACAAAAACA 59.615 29.630 0.00 0.00 33.80 2.83
1491 3514 8.012241 CGTTTCCATCTTTGAAAACAAAAACAA 58.988 29.630 0.00 0.00 33.80 2.83
1492 3515 9.670719 GTTTCCATCTTTGAAAACAAAAACAAA 57.329 25.926 0.00 0.00 33.80 2.83
1497 3520 9.940518 CATCTTTGAAAACAAAAACAAAAATGC 57.059 25.926 0.00 0.00 33.05 3.56
1498 3521 9.688592 ATCTTTGAAAACAAAAACAAAAATGCA 57.311 22.222 0.00 0.00 33.05 3.96
1499 3522 8.962111 TCTTTGAAAACAAAAACAAAAATGCAC 58.038 25.926 0.00 0.00 33.05 4.57
1500 3523 8.862550 TTTGAAAACAAAAACAAAAATGCACT 57.137 23.077 0.00 0.00 30.94 4.40
1501 3524 8.862550 TTGAAAACAAAAACAAAAATGCACTT 57.137 23.077 0.00 0.00 0.00 3.16
1502 3525 8.499514 TGAAAACAAAAACAAAAATGCACTTC 57.500 26.923 0.00 0.00 0.00 3.01
1503 3526 7.592903 TGAAAACAAAAACAAAAATGCACTTCC 59.407 29.630 0.00 0.00 0.00 3.46
1504 3527 5.559427 ACAAAAACAAAAATGCACTTCCC 57.441 34.783 0.00 0.00 0.00 3.97
1505 3528 4.094146 ACAAAAACAAAAATGCACTTCCCG 59.906 37.500 0.00 0.00 0.00 5.14
1506 3529 1.864565 AACAAAAATGCACTTCCCGC 58.135 45.000 0.00 0.00 0.00 6.13
1507 3530 0.749649 ACAAAAATGCACTTCCCGCA 59.250 45.000 0.00 0.00 44.94 5.69
1508 3531 1.137872 ACAAAAATGCACTTCCCGCAA 59.862 42.857 0.00 0.00 43.84 4.85
1509 3532 2.208431 CAAAAATGCACTTCCCGCAAA 58.792 42.857 0.00 0.00 43.84 3.68
1510 3533 2.611225 AAAATGCACTTCCCGCAAAA 57.389 40.000 0.00 0.00 43.84 2.44
1511 3534 2.611225 AAATGCACTTCCCGCAAAAA 57.389 40.000 0.00 0.00 43.84 1.94
1537 3560 6.902224 AAGAAAACAAAAATGCACTGTACC 57.098 33.333 0.00 0.00 0.00 3.34
1538 3561 5.040635 AGAAAACAAAAATGCACTGTACCG 58.959 37.500 0.00 0.00 0.00 4.02
1539 3562 2.415697 ACAAAAATGCACTGTACCGC 57.584 45.000 0.00 0.00 0.00 5.68
1605 3628 2.094417 GCAGGTGTACAAGCTTTCGATC 59.906 50.000 0.00 0.00 33.14 3.69
1763 3789 6.071784 TCGACATTTGGAAAGTAGCTGTACTA 60.072 38.462 0.00 0.00 38.66 1.82
1774 3800 5.334724 GTAGCTGTACTACTTTTGGCCTA 57.665 43.478 3.32 0.00 46.65 3.93
1843 3872 0.249405 TTTTGGTACGGCGAACTCGT 60.249 50.000 16.62 0.00 43.64 4.18
1890 3919 4.614475 TCCATAACAGAGACTGGATGACT 58.386 43.478 13.55 0.00 35.51 3.41
1911 3940 1.134371 GGGAGAGGATACCTGTTGCAC 60.134 57.143 0.00 0.00 31.76 4.57
2002 4061 4.282449 TGAGTTCTTTGATTCGGTAGTGGA 59.718 41.667 0.00 0.00 0.00 4.02
2310 4370 0.766131 TCGGTAAGCCTGGAAACCAA 59.234 50.000 0.00 0.00 30.80 3.67
2327 4387 6.437477 GGAAACCAATCAAATTTACTCCCTCT 59.563 38.462 0.00 0.00 0.00 3.69
2667 4836 2.939103 CTGTAATCCACCTTGCTGTAGC 59.061 50.000 0.00 0.00 42.50 3.58
2697 4866 6.128486 ACATGGCACCAATCTTATGTTATGA 58.872 36.000 0.00 0.00 0.00 2.15
2706 4875 8.497745 ACCAATCTTATGTTATGAAGGAGATGT 58.502 33.333 0.00 0.00 0.00 3.06
2726 4895 1.202510 TGCAAAAACCACCACTGCATC 60.203 47.619 0.00 0.00 38.06 3.91
2850 5019 6.398234 TGGTGCACAACAAGTTACATTAAT 57.602 33.333 20.43 0.00 0.00 1.40
2852 5021 6.039829 TGGTGCACAACAAGTTACATTAATCA 59.960 34.615 20.43 0.00 0.00 2.57
3066 5235 4.141711 TGGTATAACAGCCAGCTTTCCTAG 60.142 45.833 0.00 0.00 0.00 3.02
3303 5482 6.624352 TGGTACTAACGTACTCATATGGAC 57.376 41.667 2.13 0.00 44.30 4.02
3325 5504 7.067372 TGGACTCAATCTTTATGCCAAACTATG 59.933 37.037 0.00 0.00 0.00 2.23
3413 5592 7.375106 TCTTGAGAGAAGCAAGATGATTTTC 57.625 36.000 0.00 0.00 44.81 2.29
3695 5878 8.565896 TGAAACAAATCTAGTGATGTTATGCT 57.434 30.769 9.17 0.00 32.44 3.79
3702 5885 7.959689 ATCTAGTGATGTTATGCTTCATGAC 57.040 36.000 0.00 0.00 34.43 3.06
3761 5946 2.689723 GCCAGGGGTGCCTTTATGTAAT 60.690 50.000 0.00 0.00 0.00 1.89
3835 6020 6.154203 TGGTTTTTGTGCATAATCTGAACA 57.846 33.333 0.00 0.00 41.98 3.18
4078 6263 7.442969 TGGTTTATATTCCTACAGCAATAACCG 59.557 37.037 0.00 0.00 0.00 4.44
4107 6292 1.084289 CCGTCCGAAATCCAAGGTTC 58.916 55.000 0.00 0.00 0.00 3.62
4121 6306 3.253188 CCAAGGTTCGATGCTTTCAGAAA 59.747 43.478 0.00 0.00 0.00 2.52
4143 6328 9.362539 AGAAAAGCTTGTTAATTAGCATGAATG 57.637 29.630 16.22 2.46 39.85 2.67
4187 6372 3.202829 TGGTTCCTAACTCGCTGTTTT 57.797 42.857 0.00 0.00 39.89 2.43
4188 6373 4.339872 TGGTTCCTAACTCGCTGTTTTA 57.660 40.909 0.00 0.00 39.89 1.52
4288 6473 1.692411 GTTTGCTGGAGTTGGGAAGT 58.308 50.000 0.00 0.00 0.00 3.01
4309 6494 1.121378 TAAACGAGTGGGTGGTCACA 58.879 50.000 3.40 0.00 39.93 3.58
4326 6511 0.888285 ACAGAGAAGCTTGGCAGTGC 60.888 55.000 2.10 6.55 0.00 4.40
4420 6605 3.576982 CTGAACCTGTGTACCTCCAAGTA 59.423 47.826 0.00 0.00 0.00 2.24
4430 6615 9.249053 CTGTGTACCTCCAAGTATCATAGATAT 57.751 37.037 0.00 0.00 0.00 1.63
4462 6649 6.496911 TCCATACAATCCAAGAATAGGATCGA 59.503 38.462 0.00 0.00 44.94 3.59
4469 6656 3.260380 CCAAGAATAGGATCGAGCTCCAT 59.740 47.826 8.47 0.00 37.81 3.41
4506 6693 3.662186 GGAACAAACATAAAACAGCGTCG 59.338 43.478 0.00 0.00 0.00 5.12
4604 6791 2.766828 GCTAGCAGGGGAAACTAAGAGA 59.233 50.000 10.63 0.00 0.00 3.10
4605 6792 3.431068 GCTAGCAGGGGAAACTAAGAGAC 60.431 52.174 10.63 0.00 0.00 3.36
4606 6793 1.550976 AGCAGGGGAAACTAAGAGACG 59.449 52.381 0.00 0.00 0.00 4.18
4617 6804 6.872547 GGAAACTAAGAGACGAAACTGGTAAT 59.127 38.462 0.00 0.00 0.00 1.89
4666 6853 9.892130 GAAGAGAGAATTTTATCTTACAAGGGA 57.108 33.333 5.90 0.00 32.31 4.20
4697 6885 0.386352 CCAAACATCAGCACACGCAG 60.386 55.000 0.00 0.00 42.27 5.18
4722 6910 1.202806 ACACCCCATTCATAGCATCCG 60.203 52.381 0.00 0.00 0.00 4.18
4775 6963 2.562298 TCCATTGCTTGGGTCACATTTC 59.438 45.455 6.44 0.00 46.45 2.17
4780 6968 1.340889 GCTTGGGTCACATTTCTTGCA 59.659 47.619 0.00 0.00 0.00 4.08
4834 7022 0.107993 TCATCAGAGCAGCCTTTCCG 60.108 55.000 0.00 0.00 0.00 4.30
4835 7023 1.451028 ATCAGAGCAGCCTTTCCGC 60.451 57.895 0.00 0.00 0.00 5.54
4855 7043 1.542108 CGCTCCCTTCTTCCATCATCC 60.542 57.143 0.00 0.00 0.00 3.51
4897 7085 0.604780 GAAGAGCAGCAGCACCTTGA 60.605 55.000 12.14 0.00 45.49 3.02
4908 7096 1.005097 AGCACCTTGATCCAGCATTGA 59.995 47.619 0.00 0.00 0.00 2.57
4913 7101 2.096496 CCTTGATCCAGCATTGAACGAC 59.904 50.000 0.00 0.00 0.00 4.34
4920 7108 1.541147 CAGCATTGAACGACCACCATT 59.459 47.619 0.00 0.00 0.00 3.16
4984 7173 5.808540 CACCATAACAAATGAATTCAGCAGG 59.191 40.000 14.54 9.03 0.00 4.85
5105 7294 4.096190 AGGCAGATAATGTGGAATCCAG 57.904 45.455 0.27 0.00 32.34 3.86
5146 7335 0.982852 CCAGGACTATCCCCAGCACA 60.983 60.000 0.00 0.00 37.19 4.57
5196 7482 3.293311 GCATTGTGCCATATAAGCCAG 57.707 47.619 0.00 0.00 37.42 4.85
5218 7504 8.454894 GCCAGAACCAAAATTTAACTTTCAAAA 58.545 29.630 0.00 0.00 0.00 2.44
5241 7527 3.005341 GCAGTTTTGCTTTCCAGAGAC 57.995 47.619 0.00 0.00 46.95 3.36
5265 7554 6.015856 ACGTCTAAATGATCTATCAGGACCAG 60.016 42.308 0.00 0.00 40.64 4.00
5286 7575 5.104259 AGCAGAAAGGTGATTAACTAGGG 57.896 43.478 0.00 0.00 0.00 3.53
5288 7577 4.324331 GCAGAAAGGTGATTAACTAGGGGT 60.324 45.833 0.00 0.00 0.00 4.95
5289 7578 5.186198 CAGAAAGGTGATTAACTAGGGGTG 58.814 45.833 0.00 0.00 0.00 4.61
5291 7580 4.838904 AAGGTGATTAACTAGGGGTGTC 57.161 45.455 0.00 0.00 0.00 3.67
5293 7582 4.371681 AGGTGATTAACTAGGGGTGTCAT 58.628 43.478 0.00 0.00 0.00 3.06
5294 7583 4.788617 AGGTGATTAACTAGGGGTGTCATT 59.211 41.667 0.00 0.00 0.00 2.57
5295 7584 5.253096 AGGTGATTAACTAGGGGTGTCATTT 59.747 40.000 0.00 0.00 0.00 2.32
5297 7586 6.095021 GGTGATTAACTAGGGGTGTCATTTTC 59.905 42.308 0.00 0.00 0.00 2.29
5298 7587 6.095021 GTGATTAACTAGGGGTGTCATTTTCC 59.905 42.308 0.00 0.00 0.00 3.13
5299 7588 5.853572 TTAACTAGGGGTGTCATTTTCCT 57.146 39.130 0.00 0.00 0.00 3.36
5300 7589 4.741928 AACTAGGGGTGTCATTTTCCTT 57.258 40.909 0.00 0.00 0.00 3.36
5301 7590 5.853572 AACTAGGGGTGTCATTTTCCTTA 57.146 39.130 0.00 0.00 0.00 2.69
5302 7591 5.437191 ACTAGGGGTGTCATTTTCCTTAG 57.563 43.478 0.00 0.00 35.76 2.18
5303 7592 5.098663 ACTAGGGGTGTCATTTTCCTTAGA 58.901 41.667 0.00 0.00 34.38 2.10
5305 7594 3.655777 AGGGGTGTCATTTTCCTTAGACA 59.344 43.478 0.00 0.00 38.56 3.41
5306 7595 4.010349 GGGGTGTCATTTTCCTTAGACAG 58.990 47.826 0.00 0.00 41.20 3.51
5310 7599 5.693814 GTGTCATTTTCCTTAGACAGCTTG 58.306 41.667 0.00 0.00 41.20 4.01
5311 7600 5.470098 GTGTCATTTTCCTTAGACAGCTTGA 59.530 40.000 0.00 0.00 41.20 3.02
5312 7601 6.017109 GTGTCATTTTCCTTAGACAGCTTGAA 60.017 38.462 0.00 0.00 41.20 2.69
5313 7602 6.017109 TGTCATTTTCCTTAGACAGCTTGAAC 60.017 38.462 0.00 0.00 36.20 3.18
5314 7603 5.473504 TCATTTTCCTTAGACAGCTTGAACC 59.526 40.000 0.00 0.00 0.00 3.62
5315 7604 3.418684 TTCCTTAGACAGCTTGAACCC 57.581 47.619 0.00 0.00 0.00 4.11
5316 7605 1.628846 TCCTTAGACAGCTTGAACCCC 59.371 52.381 0.00 0.00 0.00 4.95
5317 7606 1.340114 CCTTAGACAGCTTGAACCCCC 60.340 57.143 0.00 0.00 0.00 5.40
5346 7635 2.854185 GGCGATAATTGCTGCTTTGTTC 59.146 45.455 0.00 0.00 0.00 3.18
5416 7710 5.424121 TTTGCTTAACTGTCTTCTTCTGC 57.576 39.130 0.00 0.00 0.00 4.26
5528 7829 3.726557 TGCCAACCATCATCTTTCTCT 57.273 42.857 0.00 0.00 0.00 3.10
5549 7850 6.870965 TCTCTCTTTGAGATACAAGTCTTTGC 59.129 38.462 0.00 0.00 46.03 3.68
5576 7877 2.195727 TCAGATCAGCCCAACATGGTA 58.804 47.619 0.00 0.00 35.17 3.25
5580 7881 3.956199 AGATCAGCCCAACATGGTAAATG 59.044 43.478 0.00 0.00 35.17 2.32
5677 7982 3.118629 TCTCTGGATTCAAGATTCCACCG 60.119 47.826 9.08 2.87 36.32 4.94
5844 8153 7.716560 TGATATGATCAGGGTTATGTTGAACTG 59.283 37.037 0.09 0.00 33.59 3.16
5951 8260 1.145803 GTGCGACCTACAACTTGGTC 58.854 55.000 0.00 0.00 46.69 4.02
6112 8421 3.758554 AGGCATGATGTAACAACCTTGTC 59.241 43.478 0.00 0.00 41.31 3.18
6199 8508 2.887152 CAGCTGCCTTTTAGAAACAGGT 59.113 45.455 0.00 0.00 39.50 4.00
6225 8534 5.391629 GGCGGAAATCTAAAACGTCATTTCT 60.392 40.000 12.63 0.00 36.11 2.52
6378 8713 3.131396 AGCGTCGGTTTGGAATATGATC 58.869 45.455 0.00 0.00 0.00 2.92
6388 8723 4.681074 TGGAATATGATCGTTGTGCCTA 57.319 40.909 0.00 0.00 0.00 3.93
6465 8800 2.595750 TTTTAGGGCTTGCTTGGCTA 57.404 45.000 3.55 0.00 0.00 3.93
6517 8852 6.487668 TGTCAATCCCATATGTGAGCTTATTG 59.512 38.462 1.24 0.00 0.00 1.90
6555 8890 0.809636 TCGCATGCACATACTTCCCG 60.810 55.000 19.57 0.00 0.00 5.14
6569 8904 7.281324 CACATACTTCCCGGTTCACAAATATAA 59.719 37.037 0.00 0.00 0.00 0.98
6570 8905 7.497909 ACATACTTCCCGGTTCACAAATATAAG 59.502 37.037 0.00 0.00 0.00 1.73
6571 8906 5.190677 ACTTCCCGGTTCACAAATATAAGG 58.809 41.667 0.00 0.00 0.00 2.69
6572 8907 4.847990 TCCCGGTTCACAAATATAAGGT 57.152 40.909 0.00 0.00 0.00 3.50
6631 8966 6.969043 TGTGAATGGAGGGAGTACATAAATT 58.031 36.000 0.00 0.00 0.00 1.82
6632 8967 7.410174 TGTGAATGGAGGGAGTACATAAATTT 58.590 34.615 0.00 0.00 0.00 1.82
6633 8968 7.556275 TGTGAATGGAGGGAGTACATAAATTTC 59.444 37.037 0.00 0.00 0.00 2.17
6634 8969 7.775561 GTGAATGGAGGGAGTACATAAATTTCT 59.224 37.037 0.00 0.00 0.00 2.52
6769 9104 2.901192 TCTTGATCCCGTGTAGAAACCA 59.099 45.455 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.509418 TTATGCCAAGAACCATCAGTAAAC 57.491 37.500 0.00 0.00 0.00 2.01
1 2 8.995027 ATATTATGCCAAGAACCATCAGTAAA 57.005 30.769 0.00 0.00 0.00 2.01
2 3 8.995027 AATATTATGCCAAGAACCATCAGTAA 57.005 30.769 0.00 0.00 0.00 2.24
3 4 8.849168 CAAATATTATGCCAAGAACCATCAGTA 58.151 33.333 0.00 0.00 0.00 2.74
4 5 7.560991 TCAAATATTATGCCAAGAACCATCAGT 59.439 33.333 0.00 0.00 0.00 3.41
5 6 7.864379 GTCAAATATTATGCCAAGAACCATCAG 59.136 37.037 0.00 0.00 0.00 2.90
6 7 7.341512 TGTCAAATATTATGCCAAGAACCATCA 59.658 33.333 0.00 0.00 0.00 3.07
7 8 7.715657 TGTCAAATATTATGCCAAGAACCATC 58.284 34.615 0.00 0.00 0.00 3.51
8 9 7.658525 TGTCAAATATTATGCCAAGAACCAT 57.341 32.000 0.00 0.00 0.00 3.55
9 10 7.341512 TCATGTCAAATATTATGCCAAGAACCA 59.658 33.333 0.00 0.00 0.00 3.67
10 11 7.649306 GTCATGTCAAATATTATGCCAAGAACC 59.351 37.037 0.00 0.00 0.00 3.62
11 12 8.190122 TGTCATGTCAAATATTATGCCAAGAAC 58.810 33.333 0.00 0.00 0.00 3.01
12 13 8.291191 TGTCATGTCAAATATTATGCCAAGAA 57.709 30.769 0.00 0.00 0.00 2.52
13 14 7.878547 TGTCATGTCAAATATTATGCCAAGA 57.121 32.000 0.00 0.00 0.00 3.02
14 15 8.192774 ACTTGTCATGTCAAATATTATGCCAAG 58.807 33.333 14.01 14.01 40.41 3.61
15 16 7.975058 CACTTGTCATGTCAAATATTATGCCAA 59.025 33.333 6.82 0.00 0.00 4.52
16 17 7.122501 ACACTTGTCATGTCAAATATTATGCCA 59.877 33.333 6.82 0.00 0.00 4.92
17 18 7.483307 ACACTTGTCATGTCAAATATTATGCC 58.517 34.615 6.82 0.00 0.00 4.40
18 19 8.915871 AACACTTGTCATGTCAAATATTATGC 57.084 30.769 6.82 0.00 0.00 3.14
20 21 9.859427 CCAAACACTTGTCATGTCAAATATTAT 57.141 29.630 6.82 0.00 0.00 1.28
21 22 8.855110 ACCAAACACTTGTCATGTCAAATATTA 58.145 29.630 6.82 0.00 0.00 0.98
22 23 7.725251 ACCAAACACTTGTCATGTCAAATATT 58.275 30.769 6.82 0.00 0.00 1.28
23 24 7.288810 ACCAAACACTTGTCATGTCAAATAT 57.711 32.000 6.82 0.00 0.00 1.28
24 25 6.707440 ACCAAACACTTGTCATGTCAAATA 57.293 33.333 6.82 0.00 0.00 1.40
25 26 5.596836 ACCAAACACTTGTCATGTCAAAT 57.403 34.783 6.82 0.00 0.00 2.32
26 27 5.398603 AACCAAACACTTGTCATGTCAAA 57.601 34.783 6.82 0.00 0.00 2.69
27 28 6.516739 TTAACCAAACACTTGTCATGTCAA 57.483 33.333 5.28 5.28 0.00 3.18
28 29 5.449862 GCTTAACCAAACACTTGTCATGTCA 60.450 40.000 0.00 0.00 0.00 3.58
29 30 4.976116 GCTTAACCAAACACTTGTCATGTC 59.024 41.667 0.00 0.00 0.00 3.06
30 31 4.644685 AGCTTAACCAAACACTTGTCATGT 59.355 37.500 0.00 0.00 0.00 3.21
31 32 5.186996 AGCTTAACCAAACACTTGTCATG 57.813 39.130 0.00 0.00 0.00 3.07
32 33 5.852282 AAGCTTAACCAAACACTTGTCAT 57.148 34.783 0.00 0.00 0.00 3.06
33 34 5.648526 TGTAAGCTTAACCAAACACTTGTCA 59.351 36.000 7.99 0.00 0.00 3.58
34 35 5.969435 GTGTAAGCTTAACCAAACACTTGTC 59.031 40.000 16.94 0.00 35.50 3.18
35 36 5.650703 AGTGTAAGCTTAACCAAACACTTGT 59.349 36.000 19.86 4.17 43.63 3.16
36 37 6.131544 AGTGTAAGCTTAACCAAACACTTG 57.868 37.500 19.86 0.00 43.63 3.16
37 38 5.883673 TGAGTGTAAGCTTAACCAAACACTT 59.116 36.000 24.14 12.86 45.46 3.16
39 40 5.065474 TGTGAGTGTAAGCTTAACCAAACAC 59.935 40.000 16.63 16.63 37.96 3.32
40 41 5.186942 TGTGAGTGTAAGCTTAACCAAACA 58.813 37.500 7.99 7.95 0.00 2.83
41 42 5.744666 TGTGAGTGTAAGCTTAACCAAAC 57.255 39.130 7.99 5.45 0.00 2.93
42 43 9.727859 TTATATGTGAGTGTAAGCTTAACCAAA 57.272 29.630 7.99 5.52 0.00 3.28
43 44 9.158233 GTTATATGTGAGTGTAAGCTTAACCAA 57.842 33.333 7.99 0.00 0.00 3.67
44 45 8.537016 AGTTATATGTGAGTGTAAGCTTAACCA 58.463 33.333 7.99 0.00 0.00 3.67
45 46 8.943909 AGTTATATGTGAGTGTAAGCTTAACC 57.056 34.615 7.99 1.55 0.00 2.85
55 56 9.102757 CTGCATCTTTAAGTTATATGTGAGTGT 57.897 33.333 0.00 0.00 0.00 3.55
56 57 9.317936 TCTGCATCTTTAAGTTATATGTGAGTG 57.682 33.333 0.00 0.00 0.00 3.51
59 60 9.276590 CCATCTGCATCTTTAAGTTATATGTGA 57.723 33.333 0.00 0.00 0.00 3.58
60 61 9.276590 TCCATCTGCATCTTTAAGTTATATGTG 57.723 33.333 0.00 0.00 0.00 3.21
68 69 9.412460 TCATTAAATCCATCTGCATCTTTAAGT 57.588 29.630 0.00 0.00 0.00 2.24
71 72 9.803507 AGATCATTAAATCCATCTGCATCTTTA 57.196 29.630 0.00 0.00 0.00 1.85
72 73 8.577296 CAGATCATTAAATCCATCTGCATCTTT 58.423 33.333 0.00 0.00 36.76 2.52
73 74 7.942894 TCAGATCATTAAATCCATCTGCATCTT 59.057 33.333 0.00 0.00 41.37 2.40
74 75 7.459234 TCAGATCATTAAATCCATCTGCATCT 58.541 34.615 0.00 0.00 41.37 2.90
75 76 7.683437 TCAGATCATTAAATCCATCTGCATC 57.317 36.000 0.00 0.00 41.37 3.91
76 77 7.122799 CCATCAGATCATTAAATCCATCTGCAT 59.877 37.037 0.00 0.00 41.37 3.96
77 78 6.433093 CCATCAGATCATTAAATCCATCTGCA 59.567 38.462 0.00 0.00 41.37 4.41
78 79 6.433404 ACCATCAGATCATTAAATCCATCTGC 59.567 38.462 0.00 0.00 41.37 4.26
79 80 7.997773 ACCATCAGATCATTAAATCCATCTG 57.002 36.000 0.00 1.98 42.47 2.90
147 148 8.985315 TTGATTGTCCATAGCAGAGAAAATAT 57.015 30.769 0.00 0.00 0.00 1.28
148 149 8.677300 GTTTGATTGTCCATAGCAGAGAAAATA 58.323 33.333 0.00 0.00 0.00 1.40
149 150 7.395489 AGTTTGATTGTCCATAGCAGAGAAAAT 59.605 33.333 0.00 0.00 0.00 1.82
150 151 6.716628 AGTTTGATTGTCCATAGCAGAGAAAA 59.283 34.615 0.00 0.00 0.00 2.29
151 152 6.240894 AGTTTGATTGTCCATAGCAGAGAAA 58.759 36.000 0.00 0.00 0.00 2.52
152 153 5.809001 AGTTTGATTGTCCATAGCAGAGAA 58.191 37.500 0.00 0.00 0.00 2.87
153 154 5.426689 AGTTTGATTGTCCATAGCAGAGA 57.573 39.130 0.00 0.00 0.00 3.10
154 155 7.615582 TTTAGTTTGATTGTCCATAGCAGAG 57.384 36.000 0.00 0.00 0.00 3.35
155 156 8.461222 CAATTTAGTTTGATTGTCCATAGCAGA 58.539 33.333 0.00 0.00 0.00 4.26
156 157 8.246180 ACAATTTAGTTTGATTGTCCATAGCAG 58.754 33.333 0.00 0.00 41.31 4.24
157 158 8.121305 ACAATTTAGTTTGATTGTCCATAGCA 57.879 30.769 0.00 0.00 41.31 3.49
158 159 8.986477 AACAATTTAGTTTGATTGTCCATAGC 57.014 30.769 2.60 0.00 43.58 2.97
162 163 9.906660 GATGTAACAATTTAGTTTGATTGTCCA 57.093 29.630 2.60 3.94 43.58 4.02
190 191 9.367444 GCAAGCAGAAAGTAGAACTATTACTAA 57.633 33.333 0.00 0.00 31.37 2.24
191 192 8.528643 TGCAAGCAGAAAGTAGAACTATTACTA 58.471 33.333 0.00 0.00 31.37 1.82
192 193 7.386851 TGCAAGCAGAAAGTAGAACTATTACT 58.613 34.615 0.00 0.00 32.90 2.24
193 194 7.596749 TGCAAGCAGAAAGTAGAACTATTAC 57.403 36.000 0.00 0.00 0.00 1.89
194 195 7.119262 GGTTGCAAGCAGAAAGTAGAACTATTA 59.881 37.037 23.18 0.00 0.00 0.98
195 196 6.072452 GGTTGCAAGCAGAAAGTAGAACTATT 60.072 38.462 23.18 0.00 0.00 1.73
196 197 5.412904 GGTTGCAAGCAGAAAGTAGAACTAT 59.587 40.000 23.18 0.00 0.00 2.12
197 198 4.755123 GGTTGCAAGCAGAAAGTAGAACTA 59.245 41.667 23.18 0.00 0.00 2.24
198 199 3.565902 GGTTGCAAGCAGAAAGTAGAACT 59.434 43.478 23.18 0.00 0.00 3.01
199 200 3.315191 TGGTTGCAAGCAGAAAGTAGAAC 59.685 43.478 26.54 0.00 31.91 3.01
200 201 3.550820 TGGTTGCAAGCAGAAAGTAGAA 58.449 40.909 26.54 0.36 31.91 2.10
201 202 3.207265 TGGTTGCAAGCAGAAAGTAGA 57.793 42.857 26.54 1.14 31.91 2.59
202 203 5.824904 ATATGGTTGCAAGCAGAAAGTAG 57.175 39.130 32.12 0.00 40.07 2.57
203 204 6.208402 TCAAATATGGTTGCAAGCAGAAAGTA 59.792 34.615 32.12 21.00 40.07 2.24
204 205 5.010922 TCAAATATGGTTGCAAGCAGAAAGT 59.989 36.000 32.12 19.64 40.07 2.66
205 206 5.472148 TCAAATATGGTTGCAAGCAGAAAG 58.528 37.500 32.12 21.78 40.07 2.62
206 207 5.243507 TCTCAAATATGGTTGCAAGCAGAAA 59.756 36.000 32.12 21.54 40.07 2.52
207 208 4.766373 TCTCAAATATGGTTGCAAGCAGAA 59.234 37.500 32.12 23.79 40.07 3.02
208 209 4.334552 TCTCAAATATGGTTGCAAGCAGA 58.665 39.130 32.12 29.23 40.07 4.26
209 210 4.707030 TCTCAAATATGGTTGCAAGCAG 57.293 40.909 32.12 20.07 40.07 4.24
210 211 5.465532 TTTCTCAAATATGGTTGCAAGCA 57.534 34.783 31.34 31.34 41.10 3.91
211 212 6.973229 AATTTCTCAAATATGGTTGCAAGC 57.027 33.333 21.51 21.51 0.00 4.01
212 213 7.820872 AGGAAATTTCTCAAATATGGTTGCAAG 59.179 33.333 17.42 0.00 0.00 4.01
213 214 7.603404 CAGGAAATTTCTCAAATATGGTTGCAA 59.397 33.333 17.42 0.00 0.00 4.08
214 215 7.039152 TCAGGAAATTTCTCAAATATGGTTGCA 60.039 33.333 17.42 0.00 0.00 4.08
215 216 7.322664 TCAGGAAATTTCTCAAATATGGTTGC 58.677 34.615 17.42 0.00 0.00 4.17
216 217 9.143631 GTTCAGGAAATTTCTCAAATATGGTTG 57.856 33.333 17.42 0.86 0.00 3.77
217 218 8.869109 TGTTCAGGAAATTTCTCAAATATGGTT 58.131 29.630 17.42 0.00 0.00 3.67
218 219 8.421249 TGTTCAGGAAATTTCTCAAATATGGT 57.579 30.769 17.42 0.00 0.00 3.55
219 220 9.309516 CATGTTCAGGAAATTTCTCAAATATGG 57.690 33.333 17.42 5.51 0.00 2.74
220 221 8.814235 GCATGTTCAGGAAATTTCTCAAATATG 58.186 33.333 17.42 18.88 0.00 1.78
221 222 8.755977 AGCATGTTCAGGAAATTTCTCAAATAT 58.244 29.630 17.42 9.73 0.00 1.28
222 223 8.125978 AGCATGTTCAGGAAATTTCTCAAATA 57.874 30.769 17.42 8.10 0.00 1.40
223 224 7.001099 AGCATGTTCAGGAAATTTCTCAAAT 57.999 32.000 17.42 2.75 0.00 2.32
224 225 6.409524 AGCATGTTCAGGAAATTTCTCAAA 57.590 33.333 17.42 6.82 0.00 2.69
225 226 6.266103 AGAAGCATGTTCAGGAAATTTCTCAA 59.734 34.615 17.42 5.68 0.00 3.02
226 227 5.771666 AGAAGCATGTTCAGGAAATTTCTCA 59.228 36.000 17.42 9.65 0.00 3.27
227 228 6.264841 AGAAGCATGTTCAGGAAATTTCTC 57.735 37.500 17.42 8.14 0.00 2.87
228 229 6.661304 AAGAAGCATGTTCAGGAAATTTCT 57.339 33.333 17.42 1.61 0.00 2.52
229 230 7.439056 TCAAAAGAAGCATGTTCAGGAAATTTC 59.561 33.333 9.83 9.83 0.00 2.17
230 231 7.274447 TCAAAAGAAGCATGTTCAGGAAATTT 58.726 30.769 9.64 0.00 0.00 1.82
231 232 6.819284 TCAAAAGAAGCATGTTCAGGAAATT 58.181 32.000 9.64 0.00 0.00 1.82
232 233 6.266103 TCTCAAAAGAAGCATGTTCAGGAAAT 59.734 34.615 9.64 0.00 0.00 2.17
233 234 5.593909 TCTCAAAAGAAGCATGTTCAGGAAA 59.406 36.000 9.64 0.00 0.00 3.13
234 235 5.009010 GTCTCAAAAGAAGCATGTTCAGGAA 59.991 40.000 9.64 0.00 31.93 3.36
235 236 4.516698 GTCTCAAAAGAAGCATGTTCAGGA 59.483 41.667 9.64 2.85 31.93 3.86
236 237 4.276678 TGTCTCAAAAGAAGCATGTTCAGG 59.723 41.667 9.64 0.00 31.93 3.86
237 238 5.008415 AGTGTCTCAAAAGAAGCATGTTCAG 59.992 40.000 9.64 0.84 31.93 3.02
238 239 4.883585 AGTGTCTCAAAAGAAGCATGTTCA 59.116 37.500 9.64 0.00 31.93 3.18
239 240 5.008019 TCAGTGTCTCAAAAGAAGCATGTTC 59.992 40.000 0.00 0.00 31.93 3.18
240 241 4.883585 TCAGTGTCTCAAAAGAAGCATGTT 59.116 37.500 0.00 0.00 31.93 2.71
241 242 4.454678 TCAGTGTCTCAAAAGAAGCATGT 58.545 39.130 0.00 0.00 31.93 3.21
242 243 5.428496 TTCAGTGTCTCAAAAGAAGCATG 57.572 39.130 0.00 0.00 31.93 4.06
243 244 6.128063 GCTATTCAGTGTCTCAAAAGAAGCAT 60.128 38.462 0.00 0.00 31.93 3.79
244 245 5.180117 GCTATTCAGTGTCTCAAAAGAAGCA 59.820 40.000 0.00 0.00 31.93 3.91
245 246 5.391416 GGCTATTCAGTGTCTCAAAAGAAGC 60.391 44.000 0.00 0.00 31.93 3.86
246 247 5.702670 TGGCTATTCAGTGTCTCAAAAGAAG 59.297 40.000 0.00 0.00 31.93 2.85
247 248 5.620206 TGGCTATTCAGTGTCTCAAAAGAA 58.380 37.500 0.00 0.00 31.93 2.52
248 249 5.227569 TGGCTATTCAGTGTCTCAAAAGA 57.772 39.130 0.00 0.00 0.00 2.52
249 250 6.506500 AATGGCTATTCAGTGTCTCAAAAG 57.493 37.500 0.00 0.00 0.00 2.27
250 251 6.899393 AAATGGCTATTCAGTGTCTCAAAA 57.101 33.333 0.00 0.00 0.00 2.44
251 252 6.899393 AAAATGGCTATTCAGTGTCTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
252 253 6.899393 AAAAATGGCTATTCAGTGTCTCAA 57.101 33.333 0.00 0.00 0.00 3.02
272 273 9.658799 TTGAAAACTCAAATATGTCACCAAAAA 57.341 25.926 0.00 0.00 0.00 1.94
273 274 9.658799 TTTGAAAACTCAAATATGTCACCAAAA 57.341 25.926 0.00 0.00 35.01 2.44
274 275 9.658799 TTTTGAAAACTCAAATATGTCACCAAA 57.341 25.926 1.41 0.00 39.07 3.28
275 276 9.829507 ATTTTGAAAACTCAAATATGTCACCAA 57.170 25.926 0.00 0.00 39.07 3.67
276 277 9.829507 AATTTTGAAAACTCAAATATGTCACCA 57.170 25.926 0.00 0.00 39.07 4.17
288 289 9.657121 GTTTTTCACAACAATTTTGAAAACTCA 57.343 25.926 12.71 0.63 44.74 3.41
289 290 9.657121 TGTTTTTCACAACAATTTTGAAAACTC 57.343 25.926 12.71 10.38 44.74 3.01
362 363 4.890088 ACGATGTTGTCTTACTTAGGCAA 58.110 39.130 0.00 0.00 45.88 4.52
363 364 4.530710 ACGATGTTGTCTTACTTAGGCA 57.469 40.909 0.00 0.00 36.48 4.75
364 365 6.956299 TTTACGATGTTGTCTTACTTAGGC 57.044 37.500 0.00 0.00 0.00 3.93
365 366 9.968743 GAAATTTACGATGTTGTCTTACTTAGG 57.031 33.333 0.00 0.00 0.00 2.69
369 370 8.870879 GCTAGAAATTTACGATGTTGTCTTACT 58.129 33.333 0.00 0.00 0.00 2.24
370 371 8.114905 GGCTAGAAATTTACGATGTTGTCTTAC 58.885 37.037 0.00 0.00 0.00 2.34
371 372 7.279313 GGGCTAGAAATTTACGATGTTGTCTTA 59.721 37.037 0.00 0.00 0.00 2.10
372 373 6.093633 GGGCTAGAAATTTACGATGTTGTCTT 59.906 38.462 0.00 0.00 0.00 3.01
373 374 5.585047 GGGCTAGAAATTTACGATGTTGTCT 59.415 40.000 0.00 0.00 0.00 3.41
374 375 5.501897 CGGGCTAGAAATTTACGATGTTGTC 60.502 44.000 0.00 0.00 0.00 3.18
375 376 4.331717 CGGGCTAGAAATTTACGATGTTGT 59.668 41.667 0.00 0.00 0.00 3.32
376 377 4.785341 GCGGGCTAGAAATTTACGATGTTG 60.785 45.833 0.00 0.00 0.00 3.33
377 378 3.311596 GCGGGCTAGAAATTTACGATGTT 59.688 43.478 0.00 0.00 0.00 2.71
378 379 2.870411 GCGGGCTAGAAATTTACGATGT 59.130 45.455 0.00 0.00 0.00 3.06
379 380 2.096909 CGCGGGCTAGAAATTTACGATG 60.097 50.000 0.00 0.00 0.00 3.84
380 381 2.132762 CGCGGGCTAGAAATTTACGAT 58.867 47.619 0.00 0.00 0.00 3.73
381 382 1.563111 CGCGGGCTAGAAATTTACGA 58.437 50.000 0.00 0.00 0.00 3.43
382 383 0.042448 GCGCGGGCTAGAAATTTACG 60.042 55.000 18.33 0.00 35.83 3.18
383 384 1.011333 TGCGCGGGCTAGAAATTTAC 58.989 50.000 25.62 0.00 40.82 2.01
384 385 1.740297 TTGCGCGGGCTAGAAATTTA 58.260 45.000 25.62 0.00 40.82 1.40
385 386 1.102978 ATTGCGCGGGCTAGAAATTT 58.897 45.000 25.62 0.00 40.82 1.82
386 387 1.102978 AATTGCGCGGGCTAGAAATT 58.897 45.000 25.62 18.34 40.82 1.82
387 388 0.381801 CAATTGCGCGGGCTAGAAAT 59.618 50.000 25.62 13.47 40.82 2.17
388 389 0.675208 TCAATTGCGCGGGCTAGAAA 60.675 50.000 25.62 11.63 40.82 2.52
389 390 1.078778 TCAATTGCGCGGGCTAGAA 60.079 52.632 25.62 12.01 40.82 2.10
390 391 1.521457 CTCAATTGCGCGGGCTAGA 60.521 57.895 25.62 15.43 40.82 2.43
391 392 3.017323 CTCAATTGCGCGGGCTAG 58.983 61.111 25.62 12.11 40.82 3.42
392 393 3.202001 GCTCAATTGCGCGGGCTA 61.202 61.111 25.62 18.81 40.82 3.93
400 401 2.158561 AAAGTGGCCCGCTCAATTGC 62.159 55.000 0.00 0.00 0.00 3.56
401 402 0.388907 CAAAGTGGCCCGCTCAATTG 60.389 55.000 0.00 0.00 0.00 2.32
402 403 1.966762 CAAAGTGGCCCGCTCAATT 59.033 52.632 0.00 0.00 0.00 2.32
403 404 2.639327 GCAAAGTGGCCCGCTCAAT 61.639 57.895 0.00 0.00 0.00 2.57
404 405 2.404566 TAGCAAAGTGGCCCGCTCAA 62.405 55.000 0.00 0.00 35.93 3.02
405 406 2.803155 CTAGCAAAGTGGCCCGCTCA 62.803 60.000 0.00 0.00 35.93 4.26
406 407 2.046314 TAGCAAAGTGGCCCGCTC 60.046 61.111 0.00 0.00 35.93 5.03
407 408 2.045926 CTAGCAAAGTGGCCCGCT 60.046 61.111 0.00 2.89 38.51 5.52
408 409 0.675522 TAACTAGCAAAGTGGCCCGC 60.676 55.000 0.00 0.00 38.88 6.13
409 410 1.467342 GTTAACTAGCAAAGTGGCCCG 59.533 52.381 0.00 0.00 38.88 6.13
410 411 2.791655 AGTTAACTAGCAAAGTGGCCC 58.208 47.619 6.26 0.00 38.88 5.80
411 412 5.952526 TTAAGTTAACTAGCAAAGTGGCC 57.047 39.130 8.92 0.00 38.88 5.36
412 413 7.645402 TCTTTTAAGTTAACTAGCAAAGTGGC 58.355 34.615 21.78 0.00 38.88 5.01
427 428 9.448438 AGGCAATGTTTCTTTTTCTTTTAAGTT 57.552 25.926 0.00 0.00 0.00 2.66
428 429 8.882736 CAGGCAATGTTTCTTTTTCTTTTAAGT 58.117 29.630 0.00 0.00 0.00 2.24
429 430 8.882736 ACAGGCAATGTTTCTTTTTCTTTTAAG 58.117 29.630 0.00 0.00 39.96 1.85
430 431 8.785329 ACAGGCAATGTTTCTTTTTCTTTTAA 57.215 26.923 0.00 0.00 39.96 1.52
431 432 9.308318 GTACAGGCAATGTTTCTTTTTCTTTTA 57.692 29.630 0.00 0.00 39.96 1.52
432 433 8.040727 AGTACAGGCAATGTTTCTTTTTCTTTT 58.959 29.630 0.00 0.00 39.96 2.27
433 434 7.555965 AGTACAGGCAATGTTTCTTTTTCTTT 58.444 30.769 0.00 0.00 39.96 2.52
434 435 7.112452 AGTACAGGCAATGTTTCTTTTTCTT 57.888 32.000 0.00 0.00 39.96 2.52
435 436 6.715347 AGTACAGGCAATGTTTCTTTTTCT 57.285 33.333 0.00 0.00 39.96 2.52
436 437 7.770801 AAAGTACAGGCAATGTTTCTTTTTC 57.229 32.000 13.21 0.00 39.96 2.29
437 438 8.560355 AAAAAGTACAGGCAATGTTTCTTTTT 57.440 26.923 23.79 23.79 45.97 1.94
459 460 4.265556 CACGCAATGTTTTACGGTCAAAAA 59.734 37.500 0.00 0.00 0.00 1.94
460 461 3.791887 CACGCAATGTTTTACGGTCAAAA 59.208 39.130 0.00 0.00 0.00 2.44
461 462 3.181499 ACACGCAATGTTTTACGGTCAAA 60.181 39.130 0.00 0.00 38.98 2.69
462 463 2.355132 ACACGCAATGTTTTACGGTCAA 59.645 40.909 0.00 0.00 38.98 3.18
463 464 1.941294 ACACGCAATGTTTTACGGTCA 59.059 42.857 0.00 0.00 38.98 4.02
464 465 2.673976 ACACGCAATGTTTTACGGTC 57.326 45.000 0.00 0.00 38.98 4.79
465 466 3.132925 AGTACACGCAATGTTTTACGGT 58.867 40.909 0.00 0.00 43.19 4.83
466 467 3.799137 AGTACACGCAATGTTTTACGG 57.201 42.857 0.00 0.00 43.19 4.02
467 468 6.085121 TCATAGTACACGCAATGTTTTACG 57.915 37.500 0.00 0.00 43.19 3.18
468 469 5.957796 GCTCATAGTACACGCAATGTTTTAC 59.042 40.000 0.00 0.00 43.19 2.01
469 470 5.064198 GGCTCATAGTACACGCAATGTTTTA 59.936 40.000 0.00 0.00 43.19 1.52
470 471 4.142687 GGCTCATAGTACACGCAATGTTTT 60.143 41.667 0.00 0.00 43.19 2.43
471 472 3.374058 GGCTCATAGTACACGCAATGTTT 59.626 43.478 0.00 0.00 43.19 2.83
472 473 2.936498 GGCTCATAGTACACGCAATGTT 59.064 45.455 0.00 0.00 43.19 2.71
473 474 2.093711 TGGCTCATAGTACACGCAATGT 60.094 45.455 0.00 0.00 46.06 2.71
474 475 2.541346 CTGGCTCATAGTACACGCAATG 59.459 50.000 0.00 0.00 0.00 2.82
475 476 2.430694 TCTGGCTCATAGTACACGCAAT 59.569 45.455 0.00 0.00 0.00 3.56
476 477 1.822371 TCTGGCTCATAGTACACGCAA 59.178 47.619 0.00 0.00 0.00 4.85
477 478 1.470051 TCTGGCTCATAGTACACGCA 58.530 50.000 0.00 0.00 0.00 5.24
478 479 2.398498 CATCTGGCTCATAGTACACGC 58.602 52.381 0.00 0.00 0.00 5.34
479 480 2.288457 CCCATCTGGCTCATAGTACACG 60.288 54.545 0.00 0.00 0.00 4.49
480 481 3.393089 CCCATCTGGCTCATAGTACAC 57.607 52.381 0.00 0.00 0.00 2.90
501 502 1.192534 GGACAAGCAAGTTCGTTCTCG 59.807 52.381 0.00 0.00 38.55 4.04
506 507 2.484264 GCTAATGGACAAGCAAGTTCGT 59.516 45.455 0.00 0.00 38.63 3.85
522 523 3.081133 CGCTCGTGTTGCGCTAAT 58.919 55.556 9.73 0.00 46.72 1.73
530 531 2.724721 CGTCGTGTCGCTCGTGTT 60.725 61.111 2.34 0.00 0.00 3.32
531 532 4.678269 CCGTCGTGTCGCTCGTGT 62.678 66.667 0.00 0.00 0.00 4.49
693 694 0.040781 CGTGGTCGGCGTTTGATTTT 60.041 50.000 6.85 0.00 0.00 1.82
719 720 4.148825 CGTGGAAGCCGAGGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
871 873 3.404773 GGCTCTAGGTGGCCTGTT 58.595 61.111 3.32 0.00 44.48 3.16
884 886 2.428085 GGAGTTCCCGAGGAGGCTC 61.428 68.421 5.78 5.78 39.21 4.70
885 887 2.364448 GGAGTTCCCGAGGAGGCT 60.364 66.667 0.00 0.00 39.21 4.58
1212 3228 3.134127 GCCATGAACACGGCCTCC 61.134 66.667 0.00 0.00 42.82 4.30
1406 3428 3.805422 CGTACACCAACAGCTGACTTAAA 59.195 43.478 23.35 0.00 0.00 1.52
1408 3430 2.363038 ACGTACACCAACAGCTGACTTA 59.637 45.455 23.35 0.00 0.00 2.24
1413 3435 1.790623 GTACACGTACACCAACAGCTG 59.209 52.381 13.48 13.48 36.15 4.24
1479 3502 6.865726 GGGAAGTGCATTTTTGTTTTTGTTTT 59.134 30.769 0.00 0.00 0.00 2.43
1480 3503 6.385843 GGGAAGTGCATTTTTGTTTTTGTTT 58.614 32.000 0.00 0.00 0.00 2.83
1481 3504 5.391416 CGGGAAGTGCATTTTTGTTTTTGTT 60.391 36.000 0.00 0.00 0.00 2.83
1482 3505 4.094146 CGGGAAGTGCATTTTTGTTTTTGT 59.906 37.500 0.00 0.00 0.00 2.83
1483 3506 4.586334 CGGGAAGTGCATTTTTGTTTTTG 58.414 39.130 0.00 0.00 0.00 2.44
1484 3507 3.064682 GCGGGAAGTGCATTTTTGTTTTT 59.935 39.130 0.00 0.00 0.00 1.94
1485 3508 2.611751 GCGGGAAGTGCATTTTTGTTTT 59.388 40.909 0.00 0.00 0.00 2.43
1486 3509 2.209273 GCGGGAAGTGCATTTTTGTTT 58.791 42.857 0.00 0.00 0.00 2.83
1487 3510 1.137872 TGCGGGAAGTGCATTTTTGTT 59.862 42.857 0.00 0.00 37.44 2.83
1488 3511 0.749649 TGCGGGAAGTGCATTTTTGT 59.250 45.000 0.00 0.00 37.44 2.83
1489 3512 1.863267 TTGCGGGAAGTGCATTTTTG 58.137 45.000 0.00 0.00 42.84 2.44
1490 3513 2.611225 TTTGCGGGAAGTGCATTTTT 57.389 40.000 0.00 0.00 42.84 1.94
1491 3514 2.611225 TTTTGCGGGAAGTGCATTTT 57.389 40.000 0.00 0.00 42.84 1.82
1492 3515 2.611225 TTTTTGCGGGAAGTGCATTT 57.389 40.000 0.00 0.00 42.84 2.32
1511 3534 8.233868 GGTACAGTGCATTTTTGTTTTCTTTTT 58.766 29.630 0.00 0.00 0.00 1.94
1512 3535 7.412455 CGGTACAGTGCATTTTTGTTTTCTTTT 60.412 33.333 0.00 0.00 0.00 2.27
1513 3536 6.035542 CGGTACAGTGCATTTTTGTTTTCTTT 59.964 34.615 0.00 0.00 0.00 2.52
1514 3537 5.518487 CGGTACAGTGCATTTTTGTTTTCTT 59.482 36.000 0.00 0.00 0.00 2.52
1515 3538 5.040635 CGGTACAGTGCATTTTTGTTTTCT 58.959 37.500 0.00 0.00 0.00 2.52
1516 3539 4.317769 GCGGTACAGTGCATTTTTGTTTTC 60.318 41.667 0.00 0.00 0.00 2.29
1517 3540 3.553917 GCGGTACAGTGCATTTTTGTTTT 59.446 39.130 0.00 0.00 0.00 2.43
1518 3541 3.120041 GCGGTACAGTGCATTTTTGTTT 58.880 40.909 0.00 0.00 0.00 2.83
1519 3542 2.099921 TGCGGTACAGTGCATTTTTGTT 59.900 40.909 2.93 0.00 35.90 2.83
1520 3543 1.678627 TGCGGTACAGTGCATTTTTGT 59.321 42.857 2.93 0.00 35.90 2.83
1521 3544 2.414058 TGCGGTACAGTGCATTTTTG 57.586 45.000 2.93 0.00 35.90 2.44
1522 3545 3.444703 TTTGCGGTACAGTGCATTTTT 57.555 38.095 7.39 0.00 41.42 1.94
1523 3546 3.444703 TTTTGCGGTACAGTGCATTTT 57.555 38.095 7.39 0.00 41.42 1.82
1524 3547 3.444703 TTTTTGCGGTACAGTGCATTT 57.555 38.095 7.39 0.00 41.42 2.32
1550 3573 2.700897 AGGCAAATCGAGGTATAGTGCT 59.299 45.455 0.00 0.00 0.00 4.40
1843 3872 7.891498 AAAGAAAGCTACCCTGTTTCTTAAA 57.109 32.000 7.53 0.00 45.45 1.52
1890 3919 1.204146 GCAACAGGTATCCTCTCCCA 58.796 55.000 0.00 0.00 0.00 4.37
1957 3986 9.784680 ACTCAAACTAATATGTACGAGTACTTG 57.215 33.333 8.69 8.69 37.00 3.16
2217 4277 3.198635 GGATGGTTCTCATGAGGAAGTCA 59.801 47.826 22.42 13.08 40.38 3.41
2467 4539 7.227116 TCCGCAGTACCAAATTAATACCATTAC 59.773 37.037 0.00 0.00 0.00 1.89
2526 4598 9.405587 CTTTGTCTCAAGTCAAACTTTGTAAAA 57.594 29.630 1.44 0.00 36.03 1.52
2667 4836 4.789012 AAGATTGGTGCCATGTTACTTG 57.211 40.909 0.00 0.00 0.00 3.16
2697 4866 2.365293 GGTGGTTTTTGCACATCTCCTT 59.635 45.455 0.00 0.00 0.00 3.36
2706 4875 2.280835 TGCAGTGGTGGTTTTTGCA 58.719 47.368 0.00 0.00 41.97 4.08
2726 4895 4.832248 TGTCAGCCTTACTTAACATGGAG 58.168 43.478 0.00 0.00 0.00 3.86
2850 5019 9.421399 TGTATCAGACAGATAAATCCTACTTGA 57.579 33.333 0.00 0.00 40.76 3.02
3066 5235 8.974060 TTAATCCTACAGGGTTGAATTCATAC 57.026 34.615 9.40 10.09 39.28 2.39
3290 5469 8.930760 GCATAAAGATTGAGTCCATATGAGTAC 58.069 37.037 3.65 0.00 32.02 2.73
3303 5482 8.246180 ACAACATAGTTTGGCATAAAGATTGAG 58.754 33.333 0.00 0.00 0.00 3.02
3422 5601 3.070878 AGGTTGGTTGCCCATTACAAAAG 59.929 43.478 0.00 0.00 41.49 2.27
3424 5603 2.366916 CAGGTTGGTTGCCCATTACAAA 59.633 45.455 0.00 0.00 41.49 2.83
3426 5605 1.626686 CAGGTTGGTTGCCCATTACA 58.373 50.000 0.00 0.00 41.49 2.41
3428 5607 0.252012 CCCAGGTTGGTTGCCCATTA 60.252 55.000 0.00 0.00 41.49 1.90
3494 5677 6.885376 TCACTTTTTACCTGTGTTCCAGTAAA 59.115 34.615 0.00 0.00 39.74 2.01
3695 5878 8.274322 AGACCAAAATATATCACCTGTCATGAA 58.726 33.333 0.00 0.00 0.00 2.57
3702 5885 7.148573 GCATACGAGACCAAAATATATCACCTG 60.149 40.741 0.00 0.00 0.00 4.00
3782 5967 7.621832 TGAAACGTCTGCAAAAATAAATCTG 57.378 32.000 0.00 0.00 0.00 2.90
3784 5969 8.583765 GGTATGAAACGTCTGCAAAAATAAATC 58.416 33.333 0.00 0.00 0.00 2.17
4078 6263 2.193306 TTTCGGACGGCGTATAGAAC 57.807 50.000 14.74 0.00 0.00 3.01
4121 6306 7.605449 ACACATTCATGCTAATTAACAAGCTT 58.395 30.769 11.11 0.00 39.53 3.74
4143 6328 5.072741 ACATTTCCTATATGGCATGGACAC 58.927 41.667 10.98 0.00 33.18 3.67
4187 6372 7.914427 ATGGTATGAAGTGGATAGAACTGTA 57.086 36.000 0.00 0.00 0.00 2.74
4188 6373 6.814954 ATGGTATGAAGTGGATAGAACTGT 57.185 37.500 0.00 0.00 0.00 3.55
4288 6473 1.121378 TGACCACCCACTCGTTTACA 58.879 50.000 0.00 0.00 0.00 2.41
4309 6494 0.179009 TTGCACTGCCAAGCTTCTCT 60.179 50.000 0.00 0.00 0.00 3.10
4326 6511 1.981254 CACGGGCTTTGTATTGCTTG 58.019 50.000 0.00 0.00 0.00 4.01
4434 6619 9.829507 GATCCTATTCTTGGATTGTATGGATAG 57.170 37.037 0.00 0.00 43.68 2.08
4436 6621 7.180946 TCGATCCTATTCTTGGATTGTATGGAT 59.819 37.037 9.14 0.00 43.68 3.41
4455 6642 4.963318 TTTGATAATGGAGCTCGATCCT 57.037 40.909 11.98 2.32 40.29 3.24
4506 6693 5.291293 TCTAGTTTCTTTTATTGCGCCAC 57.709 39.130 4.18 0.00 0.00 5.01
4599 6786 6.766467 ACTTTTCATTACCAGTTTCGTCTCTT 59.234 34.615 0.00 0.00 0.00 2.85
4604 6791 7.136772 GCTTTACTTTTCATTACCAGTTTCGT 58.863 34.615 0.00 0.00 0.00 3.85
4605 6792 6.581166 GGCTTTACTTTTCATTACCAGTTTCG 59.419 38.462 0.00 0.00 0.00 3.46
4606 6793 7.430441 TGGCTTTACTTTTCATTACCAGTTTC 58.570 34.615 0.00 0.00 0.00 2.78
4617 6804 2.364002 GCTGGGTTGGCTTTACTTTTCA 59.636 45.455 0.00 0.00 0.00 2.69
4666 6853 5.193679 GCTGATGTTTGGGGTATAGTTTCT 58.806 41.667 0.00 0.00 0.00 2.52
4671 6858 3.627577 GTGTGCTGATGTTTGGGGTATAG 59.372 47.826 0.00 0.00 0.00 1.31
4672 6859 3.616219 GTGTGCTGATGTTTGGGGTATA 58.384 45.455 0.00 0.00 0.00 1.47
4673 6860 2.446435 GTGTGCTGATGTTTGGGGTAT 58.554 47.619 0.00 0.00 0.00 2.73
4674 6861 1.880221 CGTGTGCTGATGTTTGGGGTA 60.880 52.381 0.00 0.00 0.00 3.69
4722 6910 0.980423 ACTTGGAGACCCAGCTTCTC 59.020 55.000 5.48 5.48 44.60 2.87
4775 6963 5.050499 GTGATAACGATGAGGAAGATGCAAG 60.050 44.000 0.00 0.00 0.00 4.01
4780 6968 4.651503 ACTGGTGATAACGATGAGGAAGAT 59.348 41.667 0.00 0.00 0.00 2.40
4834 7022 0.179034 ATGATGGAAGAAGGGAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
4835 7023 1.542108 GGATGATGGAAGAAGGGAGCG 60.542 57.143 0.00 0.00 0.00 5.03
4855 7043 0.879400 GGATGACGCTGGAGCATCAG 60.879 60.000 3.57 2.43 46.68 2.90
4871 7059 1.271762 TGCTGCTGCTCTTCAAAGGAT 60.272 47.619 17.00 0.00 40.48 3.24
4897 7085 1.453155 GTGGTCGTTCAATGCTGGAT 58.547 50.000 0.00 0.00 0.00 3.41
4908 7096 4.759782 CTCTCAGAATAATGGTGGTCGTT 58.240 43.478 0.00 0.00 0.00 3.85
4913 7101 2.877168 GCAGCTCTCAGAATAATGGTGG 59.123 50.000 0.00 0.00 0.00 4.61
4920 7108 3.969976 ACTATTGGGCAGCTCTCAGAATA 59.030 43.478 0.00 0.00 0.00 1.75
4962 7151 5.808540 CACCTGCTGAATTCATTTGTTATGG 59.191 40.000 8.96 5.85 0.00 2.74
5052 7241 1.070445 CCTGCAAATTGTTGGCTTGGA 59.930 47.619 0.00 0.00 35.10 3.53
5061 7250 7.148069 GCCTTATAGTAGAAACCTGCAAATTGT 60.148 37.037 0.00 0.00 0.00 2.71
5105 7294 3.128764 GGTGCTTATCCCAGTACTTTTGC 59.871 47.826 0.00 0.00 30.58 3.68
5120 7309 1.694693 GGGGATAGTCCTGGGTGCTTA 60.695 57.143 0.00 0.00 36.57 3.09
5132 7321 4.227300 TGAACTATTTGTGCTGGGGATAGT 59.773 41.667 0.00 0.00 35.63 2.12
5146 7335 6.668323 CCACGAAAGACAACATGAACTATTT 58.332 36.000 0.00 0.00 0.00 1.40
5196 7482 9.284594 GCCTTTTTGAAAGTTAAATTTTGGTTC 57.715 29.630 1.98 0.00 0.00 3.62
5218 7504 2.363359 CTCTGGAAAGCAAAACTGCCTT 59.637 45.455 0.00 0.00 34.90 4.35
5219 7505 1.959282 CTCTGGAAAGCAAAACTGCCT 59.041 47.619 0.00 0.00 34.90 4.75
5241 7527 6.332735 TGGTCCTGATAGATCATTTAGACG 57.667 41.667 0.00 0.00 36.02 4.18
5265 7554 4.200092 CCCCTAGTTAATCACCTTTCTGC 58.800 47.826 0.00 0.00 0.00 4.26
5280 7569 5.045797 GTCTAAGGAAAATGACACCCCTAGT 60.046 44.000 0.00 0.00 0.00 2.57
5281 7570 5.045869 TGTCTAAGGAAAATGACACCCCTAG 60.046 44.000 0.00 0.00 34.94 3.02
5283 7572 3.655777 TGTCTAAGGAAAATGACACCCCT 59.344 43.478 0.00 0.00 34.94 4.79
5286 7575 4.327680 AGCTGTCTAAGGAAAATGACACC 58.672 43.478 0.00 0.00 35.83 4.16
5288 7577 5.620206 TCAAGCTGTCTAAGGAAAATGACA 58.380 37.500 0.00 0.00 37.76 3.58
5289 7578 6.374578 GTTCAAGCTGTCTAAGGAAAATGAC 58.625 40.000 0.00 0.00 0.00 3.06
5291 7580 5.335976 GGGTTCAAGCTGTCTAAGGAAAATG 60.336 44.000 0.00 0.00 0.00 2.32
5293 7582 4.142038 GGGTTCAAGCTGTCTAAGGAAAA 58.858 43.478 0.00 0.00 0.00 2.29
5294 7583 3.497942 GGGGTTCAAGCTGTCTAAGGAAA 60.498 47.826 0.00 0.00 0.00 3.13
5295 7584 2.039879 GGGGTTCAAGCTGTCTAAGGAA 59.960 50.000 0.00 0.00 0.00 3.36
5297 7586 1.340114 GGGGGTTCAAGCTGTCTAAGG 60.340 57.143 0.00 0.00 0.00 2.69
5298 7587 2.115343 GGGGGTTCAAGCTGTCTAAG 57.885 55.000 0.00 0.00 0.00 2.18
5320 7609 2.113139 AGCAATTATCGCCGGGGG 59.887 61.111 19.63 4.42 0.00 5.40
5321 7610 2.908073 GCAGCAATTATCGCCGGGG 61.908 63.158 13.31 13.31 0.00 5.73
5322 7611 1.447317 AAGCAGCAATTATCGCCGGG 61.447 55.000 2.18 0.00 0.00 5.73
5323 7612 0.381801 AAAGCAGCAATTATCGCCGG 59.618 50.000 0.00 0.00 0.00 6.13
5324 7613 1.202177 ACAAAGCAGCAATTATCGCCG 60.202 47.619 0.00 0.00 0.00 6.46
5325 7614 2.566952 ACAAAGCAGCAATTATCGCC 57.433 45.000 0.00 0.00 0.00 5.54
5326 7615 3.500982 TGAACAAAGCAGCAATTATCGC 58.499 40.909 0.00 0.00 0.00 4.58
5327 7616 7.919313 ATAATGAACAAAGCAGCAATTATCG 57.081 32.000 0.00 0.00 0.00 2.92
5328 7617 9.304731 TGAATAATGAACAAAGCAGCAATTATC 57.695 29.630 0.00 0.00 0.00 1.75
5329 7618 9.309516 CTGAATAATGAACAAAGCAGCAATTAT 57.690 29.630 0.00 0.00 0.00 1.28
5330 7619 7.276218 GCTGAATAATGAACAAAGCAGCAATTA 59.724 33.333 0.00 0.00 44.89 1.40
5331 7620 6.091713 GCTGAATAATGAACAAAGCAGCAATT 59.908 34.615 0.00 0.00 44.89 2.32
5332 7621 5.579511 GCTGAATAATGAACAAAGCAGCAAT 59.420 36.000 0.00 0.00 44.89 3.56
5333 7622 4.925054 GCTGAATAATGAACAAAGCAGCAA 59.075 37.500 0.00 0.00 44.89 3.91
5334 7623 4.487948 GCTGAATAATGAACAAAGCAGCA 58.512 39.130 0.00 0.00 44.89 4.41
5335 7624 3.861689 GGCTGAATAATGAACAAAGCAGC 59.138 43.478 0.00 0.00 44.82 5.25
5346 7635 8.013947 CGACATTTAGAAGATGGCTGAATAATG 58.986 37.037 0.00 0.00 30.09 1.90
5416 7710 9.212641 CCTGATATGTTCCAACTATGTAATGAG 57.787 37.037 0.00 0.00 0.00 2.90
5528 7829 7.807977 AAAGCAAAGACTTGTATCTCAAAGA 57.192 32.000 0.00 0.00 35.48 2.52
5549 7850 3.760151 TGTTGGGCTGATCTGATCAAAAG 59.240 43.478 19.95 10.66 39.11 2.27
5576 7877 9.725019 TCAACTTCATAGTACAGTGAATCATTT 57.275 29.630 11.75 3.57 34.18 2.32
5634 7939 2.769209 AGGGATGTGGCAGAAGATAGT 58.231 47.619 0.00 0.00 0.00 2.12
5677 7982 4.755411 TGTCAGCTTACTATGTAAGTGGC 58.245 43.478 15.89 14.16 39.39 5.01
5790 8096 0.394899 GAAAGGCAGGGATCCAGTGG 60.395 60.000 15.23 1.40 0.00 4.00
5791 8097 0.622665 AGAAAGGCAGGGATCCAGTG 59.377 55.000 15.23 11.49 0.00 3.66
5829 8138 2.427095 GGATGCCAGTTCAACATAACCC 59.573 50.000 0.00 0.00 0.00 4.11
5830 8139 3.088532 TGGATGCCAGTTCAACATAACC 58.911 45.455 0.00 0.00 0.00 2.85
5844 8153 7.765360 TGATAACATTTCAGAATTTTGGATGCC 59.235 33.333 10.86 0.00 0.00 4.40
5951 8260 7.151308 AGATGAAATAGAAGTCGCTTCCATAG 58.849 38.462 13.62 0.00 40.98 2.23
6077 8386 5.605534 ACATCATGCCTACAGTGAAGATAC 58.394 41.667 0.00 0.00 0.00 2.24
6199 8508 3.139850 TGACGTTTTAGATTTCCGCCAA 58.860 40.909 0.00 0.00 0.00 4.52
6225 8534 2.975266 ACAGTGGAACGTTGTTACACA 58.025 42.857 22.96 3.14 45.86 3.72
6378 8713 4.870426 AGAGAAACACATATAGGCACAACG 59.130 41.667 0.00 0.00 0.00 4.10
6388 8723 5.869753 GTTGCTCACAGAGAAACACATAT 57.130 39.130 11.99 0.00 45.05 1.78
6600 8935 8.096621 TGTACTCCCTCCATTCACAAATATAA 57.903 34.615 0.00 0.00 0.00 0.98
6613 8948 6.884472 TGAGAAATTTATGTACTCCCTCCA 57.116 37.500 0.00 0.00 0.00 3.86
6769 9104 7.682787 ATGGAGTAAGAGACCAAACATAGAT 57.317 36.000 0.00 0.00 37.24 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.