Multiple sequence alignment - TraesCS7D01G189500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G189500 chr7D 100.000 3088 0 0 1 3088 142614723 142611636 0.000000e+00 5703.0
1 TraesCS7D01G189500 chr7D 92.737 179 13 0 432 610 142615027 142615205 3.050000e-65 259.0
2 TraesCS7D01G189500 chr7D 97.436 39 1 0 237 275 142614325 142614287 1.990000e-07 67.6
3 TraesCS7D01G189500 chr7D 97.436 39 1 0 399 437 142614487 142614449 1.990000e-07 67.6
4 TraesCS7D01G189500 chr7A 94.897 1450 58 5 656 2096 144607812 144606370 0.000000e+00 2254.0
5 TraesCS7D01G189500 chr7A 96.154 806 26 3 2285 3088 144605473 144604671 0.000000e+00 1312.0
6 TraesCS7D01G189500 chr7A 87.429 175 22 0 436 610 571256479 571256305 5.220000e-48 202.0
7 TraesCS7D01G189500 chr7A 96.262 107 4 0 2094 2200 144606342 144606236 3.160000e-40 176.0
8 TraesCS7D01G189500 chr7B 93.078 1488 85 8 611 2094 106948079 106949552 0.000000e+00 2161.0
9 TraesCS7D01G189500 chr7B 95.369 907 37 2 2182 3088 106949622 106950523 0.000000e+00 1437.0
10 TraesCS7D01G189500 chr1D 86.577 298 29 7 1 297 250235636 250235923 4.970000e-83 318.0
11 TraesCS7D01G189500 chr1D 90.503 179 17 0 432 610 250235324 250235146 1.430000e-58 237.0
12 TraesCS7D01G189500 chr6D 87.279 283 23 6 1 282 255525324 255525054 8.320000e-81 311.0
13 TraesCS7D01G189500 chr6D 89.831 177 18 0 434 610 255525629 255525805 8.610000e-56 228.0
14 TraesCS7D01G189500 chr2D 85.953 299 33 3 2 299 109706660 109706950 8.320000e-81 311.0
15 TraesCS7D01G189500 chr2D 93.220 177 12 0 434 610 185200197 185200373 8.490000e-66 261.0
16 TraesCS7D01G189500 chr2D 90.000 180 17 1 432 611 109706357 109706179 6.660000e-57 231.0
17 TraesCS7D01G189500 chr2D 89.326 178 18 1 434 611 308022872 308022696 4.010000e-54 222.0
18 TraesCS7D01G189500 chr2D 87.151 179 23 0 433 611 586369053 586369231 1.450000e-48 204.0
19 TraesCS7D01G189500 chr6A 83.221 298 39 6 1 297 535010223 535009936 2.360000e-66 263.0
20 TraesCS7D01G189500 chr3D 88.268 179 21 0 433 611 268049424 268049602 6.710000e-52 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G189500 chr7D 142611636 142614723 3087 True 1946.066667 5703 98.290667 1 3088 3 chr7D.!!$R1 3087
1 TraesCS7D01G189500 chr7A 144604671 144607812 3141 True 1247.333333 2254 95.771000 656 3088 3 chr7A.!!$R2 2432
2 TraesCS7D01G189500 chr7B 106948079 106950523 2444 False 1799.000000 2161 94.223500 611 3088 2 chr7B.!!$F1 2477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 442 0.036306 GGTCCTCCATGACGGTTTGT 59.964 55.0 0.00 0.0 36.07 2.83 F
983 986 0.106116 ACTCCCTCCGTCTCCCATAC 60.106 60.0 0.00 0.0 0.00 2.39 F
1871 1882 0.101219 CTCTGCGATGTCGGTCATGA 59.899 55.0 4.44 0.0 40.23 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1318 1323 0.668096 TGCGTAACGTACCTTGCAGG 60.668 55.000 0.0 1.16 42.49 4.85 R
2053 2064 1.065410 TGCCTCCCCAGGTTCAAGAA 61.065 55.000 0.0 0.00 42.74 2.52 R
2989 3746 1.339610 CACATCATCCCTCTCCTCGTC 59.660 57.143 0.0 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.821589 CCGCTTCTCCGCCTCCAC 62.822 72.222 0.00 0.00 0.00 4.02
34 35 3.764466 CGCTTCTCCGCCTCCACT 61.764 66.667 0.00 0.00 0.00 4.00
35 36 2.415608 CGCTTCTCCGCCTCCACTA 61.416 63.158 0.00 0.00 0.00 2.74
36 37 1.142097 GCTTCTCCGCCTCCACTAC 59.858 63.158 0.00 0.00 0.00 2.73
37 38 1.817209 CTTCTCCGCCTCCACTACC 59.183 63.158 0.00 0.00 0.00 3.18
38 39 2.005960 CTTCTCCGCCTCCACTACCG 62.006 65.000 0.00 0.00 0.00 4.02
39 40 4.208686 CTCCGCCTCCACTACCGC 62.209 72.222 0.00 0.00 0.00 5.68
42 43 4.208686 CGCCTCCACTACCGCCTC 62.209 72.222 0.00 0.00 0.00 4.70
43 44 3.851128 GCCTCCACTACCGCCTCC 61.851 72.222 0.00 0.00 0.00 4.30
44 45 2.042843 CCTCCACTACCGCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
45 46 2.128507 CCTCCACTACCGCCTCCTC 61.129 68.421 0.00 0.00 0.00 3.71
46 47 1.076632 CTCCACTACCGCCTCCTCT 60.077 63.158 0.00 0.00 0.00 3.69
47 48 1.076923 TCCACTACCGCCTCCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
48 49 2.128507 CCACTACCGCCTCCTCTCC 61.129 68.421 0.00 0.00 0.00 3.71
49 50 2.128507 CACTACCGCCTCCTCTCCC 61.129 68.421 0.00 0.00 0.00 4.30
50 51 2.522193 CTACCGCCTCCTCTCCCC 60.522 72.222 0.00 0.00 0.00 4.81
51 52 3.352748 TACCGCCTCCTCTCCCCA 61.353 66.667 0.00 0.00 0.00 4.96
52 53 2.873557 CTACCGCCTCCTCTCCCCAA 62.874 65.000 0.00 0.00 0.00 4.12
53 54 2.465010 TACCGCCTCCTCTCCCCAAA 62.465 60.000 0.00 0.00 0.00 3.28
54 55 2.378634 CCGCCTCCTCTCCCCAAAT 61.379 63.158 0.00 0.00 0.00 2.32
55 56 1.147153 CGCCTCCTCTCCCCAAATC 59.853 63.158 0.00 0.00 0.00 2.17
56 57 1.534203 GCCTCCTCTCCCCAAATCC 59.466 63.158 0.00 0.00 0.00 3.01
57 58 0.990818 GCCTCCTCTCCCCAAATCCT 60.991 60.000 0.00 0.00 0.00 3.24
58 59 1.135960 CCTCCTCTCCCCAAATCCTC 58.864 60.000 0.00 0.00 0.00 3.71
59 60 1.344906 CCTCCTCTCCCCAAATCCTCT 60.345 57.143 0.00 0.00 0.00 3.69
60 61 2.486716 CTCCTCTCCCCAAATCCTCTT 58.513 52.381 0.00 0.00 0.00 2.85
61 62 2.437651 CTCCTCTCCCCAAATCCTCTTC 59.562 54.545 0.00 0.00 0.00 2.87
62 63 2.046447 TCCTCTCCCCAAATCCTCTTCT 59.954 50.000 0.00 0.00 0.00 2.85
63 64 2.437651 CCTCTCCCCAAATCCTCTTCTC 59.562 54.545 0.00 0.00 0.00 2.87
64 65 2.437651 CTCTCCCCAAATCCTCTTCTCC 59.562 54.545 0.00 0.00 0.00 3.71
65 66 2.046447 TCTCCCCAAATCCTCTTCTCCT 59.954 50.000 0.00 0.00 0.00 3.69
66 67 2.437651 CTCCCCAAATCCTCTTCTCCTC 59.562 54.545 0.00 0.00 0.00 3.71
67 68 1.492599 CCCCAAATCCTCTTCTCCTCC 59.507 57.143 0.00 0.00 0.00 4.30
68 69 1.492599 CCCAAATCCTCTTCTCCTCCC 59.507 57.143 0.00 0.00 0.00 4.30
69 70 1.492599 CCAAATCCTCTTCTCCTCCCC 59.507 57.143 0.00 0.00 0.00 4.81
70 71 1.139853 CAAATCCTCTTCTCCTCCCCG 59.860 57.143 0.00 0.00 0.00 5.73
71 72 0.340208 AATCCTCTTCTCCTCCCCGT 59.660 55.000 0.00 0.00 0.00 5.28
72 73 1.232909 ATCCTCTTCTCCTCCCCGTA 58.767 55.000 0.00 0.00 0.00 4.02
73 74 0.551879 TCCTCTTCTCCTCCCCGTAG 59.448 60.000 0.00 0.00 0.00 3.51
74 75 0.259356 CCTCTTCTCCTCCCCGTAGT 59.741 60.000 0.00 0.00 0.00 2.73
75 76 1.682740 CTCTTCTCCTCCCCGTAGTC 58.317 60.000 0.00 0.00 0.00 2.59
76 77 1.213430 CTCTTCTCCTCCCCGTAGTCT 59.787 57.143 0.00 0.00 0.00 3.24
77 78 1.064611 TCTTCTCCTCCCCGTAGTCTG 60.065 57.143 0.00 0.00 0.00 3.51
78 79 0.702902 TTCTCCTCCCCGTAGTCTGT 59.297 55.000 0.00 0.00 0.00 3.41
79 80 1.588239 TCTCCTCCCCGTAGTCTGTA 58.412 55.000 0.00 0.00 0.00 2.74
80 81 1.489649 TCTCCTCCCCGTAGTCTGTAG 59.510 57.143 0.00 0.00 0.00 2.74
81 82 0.106819 TCCTCCCCGTAGTCTGTAGC 60.107 60.000 0.00 0.00 0.00 3.58
82 83 1.108132 CCTCCCCGTAGTCTGTAGCC 61.108 65.000 0.00 0.00 0.00 3.93
83 84 1.076485 TCCCCGTAGTCTGTAGCCC 60.076 63.158 0.00 0.00 0.00 5.19
84 85 2.487532 CCCCGTAGTCTGTAGCCCG 61.488 68.421 0.00 0.00 0.00 6.13
85 86 1.452651 CCCGTAGTCTGTAGCCCGA 60.453 63.158 0.00 0.00 0.00 5.14
86 87 1.722636 CCCGTAGTCTGTAGCCCGAC 61.723 65.000 0.00 0.00 0.00 4.79
87 88 1.351012 CGTAGTCTGTAGCCCGACG 59.649 63.158 0.00 0.00 35.38 5.12
88 89 1.063811 GTAGTCTGTAGCCCGACGC 59.936 63.158 0.00 0.00 35.38 5.19
89 90 2.466982 TAGTCTGTAGCCCGACGCG 61.467 63.158 3.53 3.53 44.76 6.01
99 100 3.506096 CCGACGCGCTGTCCTCTA 61.506 66.667 20.97 0.00 45.23 2.43
100 101 2.277373 CGACGCGCTGTCCTCTAC 60.277 66.667 20.97 2.77 45.23 2.59
101 102 2.277373 GACGCGCTGTCCTCTACG 60.277 66.667 17.73 0.00 42.04 3.51
102 103 3.736482 GACGCGCTGTCCTCTACGG 62.736 68.421 17.73 0.00 42.04 4.02
108 109 3.802862 CTGTCCTCTACGGCCTAGA 57.197 57.895 0.00 6.47 0.00 2.43
109 110 1.600023 CTGTCCTCTACGGCCTAGAG 58.400 60.000 22.60 22.60 45.99 2.43
110 111 0.465824 TGTCCTCTACGGCCTAGAGC 60.466 60.000 23.50 15.82 45.31 4.09
119 120 3.785982 GCCTAGAGCCCTAGAGCC 58.214 66.667 3.42 0.00 44.00 4.70
120 121 1.152440 GCCTAGAGCCCTAGAGCCA 60.152 63.158 3.42 0.00 44.00 4.75
121 122 0.544120 GCCTAGAGCCCTAGAGCCAT 60.544 60.000 3.42 0.00 44.00 4.40
122 123 1.265236 CCTAGAGCCCTAGAGCCATG 58.735 60.000 3.42 0.00 44.00 3.66
123 124 1.265236 CTAGAGCCCTAGAGCCATGG 58.735 60.000 7.63 7.63 44.00 3.66
124 125 0.833834 TAGAGCCCTAGAGCCATGGC 60.834 60.000 30.12 30.12 44.35 4.40
194 195 4.767255 GCTCGTGCAGGGTCCAGG 62.767 72.222 6.56 0.00 39.41 4.45
195 196 4.767255 CTCGTGCAGGGTCCAGGC 62.767 72.222 6.56 0.00 0.00 4.85
198 199 3.640407 GTGCAGGGTCCAGGCAGA 61.640 66.667 6.92 0.00 38.38 4.26
199 200 3.324930 TGCAGGGTCCAGGCAGAG 61.325 66.667 2.76 0.00 32.95 3.35
200 201 4.106925 GCAGGGTCCAGGCAGAGG 62.107 72.222 0.00 0.00 0.00 3.69
201 202 2.608988 CAGGGTCCAGGCAGAGGT 60.609 66.667 0.00 0.00 0.00 3.85
202 203 2.608988 AGGGTCCAGGCAGAGGTG 60.609 66.667 0.00 0.00 0.00 4.00
203 204 3.721706 GGGTCCAGGCAGAGGTGG 61.722 72.222 0.00 0.00 34.87 4.61
204 205 3.721706 GGTCCAGGCAGAGGTGGG 61.722 72.222 0.00 0.00 34.27 4.61
205 206 2.930562 GTCCAGGCAGAGGTGGGT 60.931 66.667 0.00 0.00 34.27 4.51
206 207 2.607750 TCCAGGCAGAGGTGGGTC 60.608 66.667 0.00 0.00 34.27 4.46
207 208 4.087892 CCAGGCAGAGGTGGGTCG 62.088 72.222 0.00 0.00 0.00 4.79
208 209 4.767255 CAGGCAGAGGTGGGTCGC 62.767 72.222 0.00 0.00 0.00 5.19
233 234 4.715523 GGTGGCACTGGCGGCTAA 62.716 66.667 18.45 0.00 42.47 3.09
234 235 3.431725 GTGGCACTGGCGGCTAAC 61.432 66.667 11.13 0.00 42.47 2.34
235 236 3.636231 TGGCACTGGCGGCTAACT 61.636 61.111 11.43 0.00 42.47 2.24
236 237 2.820037 GGCACTGGCGGCTAACTC 60.820 66.667 11.43 0.00 42.47 3.01
237 238 2.266055 GCACTGGCGGCTAACTCT 59.734 61.111 11.43 0.00 0.00 3.24
238 239 2.103042 GCACTGGCGGCTAACTCTG 61.103 63.158 11.43 0.00 0.00 3.35
239 240 1.448540 CACTGGCGGCTAACTCTGG 60.449 63.158 11.43 0.00 0.00 3.86
240 241 2.512515 CTGGCGGCTAACTCTGGC 60.513 66.667 11.43 0.00 38.28 4.85
241 242 3.315142 CTGGCGGCTAACTCTGGCA 62.315 63.158 11.43 0.00 44.29 4.92
242 243 2.512515 GGCGGCTAACTCTGGCAG 60.513 66.667 8.58 8.58 37.78 4.85
243 244 2.512515 GCGGCTAACTCTGGCAGG 60.513 66.667 15.73 8.05 0.00 4.85
244 245 3.019003 GCGGCTAACTCTGGCAGGA 62.019 63.158 15.73 0.36 0.00 3.86
245 246 1.142748 CGGCTAACTCTGGCAGGAG 59.857 63.158 15.73 12.88 39.09 3.69
246 247 1.524482 GGCTAACTCTGGCAGGAGG 59.476 63.158 15.73 7.99 37.63 4.30
247 248 1.153269 GCTAACTCTGGCAGGAGGC 60.153 63.158 15.73 8.64 43.74 4.70
269 270 3.402681 CTGGGTGCGGTCCTCCAT 61.403 66.667 0.00 0.00 0.00 3.41
270 271 3.687321 CTGGGTGCGGTCCTCCATG 62.687 68.421 0.00 0.00 0.00 3.66
271 272 4.489771 GGGTGCGGTCCTCCATGG 62.490 72.222 4.97 4.97 37.10 3.66
292 293 4.101448 CGTCCAGCAAGGGGAGGG 62.101 72.222 0.00 0.00 36.82 4.30
293 294 2.610859 GTCCAGCAAGGGGAGGGA 60.611 66.667 0.00 0.00 38.24 4.20
294 295 2.285668 TCCAGCAAGGGGAGGGAG 60.286 66.667 0.00 0.00 38.24 4.30
295 296 4.120755 CCAGCAAGGGGAGGGAGC 62.121 72.222 0.00 0.00 0.00 4.70
296 297 4.120755 CAGCAAGGGGAGGGAGCC 62.121 72.222 0.00 0.00 0.00 4.70
297 298 4.682714 AGCAAGGGGAGGGAGCCA 62.683 66.667 0.00 0.00 0.00 4.75
298 299 3.424105 GCAAGGGGAGGGAGCCAT 61.424 66.667 0.00 0.00 0.00 4.40
299 300 2.599597 CAAGGGGAGGGAGCCATG 59.400 66.667 0.00 0.00 0.00 3.66
300 301 2.697644 AAGGGGAGGGAGCCATGG 60.698 66.667 7.63 7.63 0.00 3.66
321 322 3.385384 CTGGCCACGAGCTCCTGA 61.385 66.667 13.57 0.00 43.05 3.86
322 323 3.655810 CTGGCCACGAGCTCCTGAC 62.656 68.421 13.57 2.53 43.05 3.51
323 324 4.803426 GGCCACGAGCTCCTGACG 62.803 72.222 13.57 2.22 43.05 4.35
324 325 4.057428 GCCACGAGCTCCTGACGT 62.057 66.667 13.57 2.90 40.87 4.34
325 326 2.697761 GCCACGAGCTCCTGACGTA 61.698 63.158 13.57 0.00 38.47 3.57
326 327 1.136984 CCACGAGCTCCTGACGTAC 59.863 63.158 13.57 0.00 38.47 3.67
327 328 1.306642 CCACGAGCTCCTGACGTACT 61.307 60.000 13.57 0.00 38.47 2.73
328 329 0.097325 CACGAGCTCCTGACGTACTC 59.903 60.000 8.47 0.00 38.47 2.59
329 330 1.348938 CGAGCTCCTGACGTACTCG 59.651 63.158 8.47 0.00 43.46 4.18
330 331 2.764944 GAGCTCCTGACGTACTCGA 58.235 57.895 0.87 0.00 40.62 4.04
331 332 0.374410 GAGCTCCTGACGTACTCGAC 59.626 60.000 0.87 0.00 40.62 4.20
340 341 4.356655 GTACTCGACGAAGACCGC 57.643 61.111 0.00 0.00 43.32 5.68
341 342 1.579626 GTACTCGACGAAGACCGCG 60.580 63.158 0.00 0.00 43.32 6.46
342 343 3.372676 TACTCGACGAAGACCGCGC 62.373 63.158 0.00 0.00 43.32 6.86
357 358 4.856607 CGCGACGGAAGGGAGCTC 62.857 72.222 4.71 4.71 0.00 4.09
358 359 4.516195 GCGACGGAAGGGAGCTCC 62.516 72.222 25.59 25.59 0.00 4.70
359 360 3.068691 CGACGGAAGGGAGCTCCA 61.069 66.667 33.29 0.00 38.24 3.86
360 361 2.579738 GACGGAAGGGAGCTCCAC 59.420 66.667 33.29 22.02 38.24 4.02
361 362 3.358076 GACGGAAGGGAGCTCCACG 62.358 68.421 33.29 29.18 38.24 4.94
362 363 4.148825 CGGAAGGGAGCTCCACGG 62.149 72.222 33.29 21.80 38.24 4.94
363 364 2.683933 GGAAGGGAGCTCCACGGA 60.684 66.667 33.29 0.00 38.24 4.69
364 365 2.291043 GGAAGGGAGCTCCACGGAA 61.291 63.158 33.29 0.00 38.24 4.30
365 366 1.219393 GAAGGGAGCTCCACGGAAG 59.781 63.158 33.29 0.00 38.24 3.46
366 367 2.245438 GAAGGGAGCTCCACGGAAGG 62.245 65.000 33.29 0.00 38.24 3.46
367 368 3.787001 GGGAGCTCCACGGAAGGG 61.787 72.222 33.29 0.00 37.91 3.95
368 369 4.475135 GGAGCTCCACGGAAGGGC 62.475 72.222 28.43 0.00 35.64 5.19
369 370 3.394836 GAGCTCCACGGAAGGGCT 61.395 66.667 0.87 0.00 37.72 5.19
370 371 2.038975 AGCTCCACGGAAGGGCTA 59.961 61.111 0.00 0.00 34.69 3.93
371 372 2.187163 GCTCCACGGAAGGGCTAC 59.813 66.667 0.00 0.00 0.00 3.58
372 373 2.359967 GCTCCACGGAAGGGCTACT 61.360 63.158 0.00 0.00 0.00 2.57
373 374 1.517832 CTCCACGGAAGGGCTACTG 59.482 63.158 0.00 0.00 0.00 2.74
374 375 1.961180 CTCCACGGAAGGGCTACTGG 61.961 65.000 0.00 0.00 0.00 4.00
375 376 2.125106 CACGGAAGGGCTACTGGC 60.125 66.667 0.00 0.00 40.90 4.85
385 386 4.577246 CTACTGGCCGCGAGCTCC 62.577 72.222 8.23 3.45 43.05 4.70
394 395 4.821589 GCGAGCTCCACGGAAGGG 62.822 72.222 8.47 0.00 0.00 3.95
395 396 4.821589 CGAGCTCCACGGAAGGGC 62.822 72.222 8.47 0.00 0.00 5.19
396 397 3.394836 GAGCTCCACGGAAGGGCT 61.395 66.667 0.87 0.00 37.72 5.19
397 398 2.038975 AGCTCCACGGAAGGGCTA 59.961 61.111 0.00 0.00 34.69 3.93
398 399 2.187163 GCTCCACGGAAGGGCTAC 59.813 66.667 0.00 0.00 0.00 3.58
399 400 2.359967 GCTCCACGGAAGGGCTACT 61.360 63.158 0.00 0.00 0.00 2.57
400 401 1.517832 CTCCACGGAAGGGCTACTG 59.482 63.158 0.00 0.00 0.00 2.74
401 402 1.961180 CTCCACGGAAGGGCTACTGG 61.961 65.000 0.00 0.00 0.00 4.00
402 403 2.125106 CACGGAAGGGCTACTGGC 60.125 66.667 0.00 0.00 40.90 4.85
403 404 2.606519 ACGGAAGGGCTACTGGCA 60.607 61.111 0.00 0.00 44.01 4.92
404 405 2.187946 CGGAAGGGCTACTGGCAG 59.812 66.667 14.16 14.16 44.01 4.85
405 406 2.592308 GGAAGGGCTACTGGCAGG 59.408 66.667 20.34 2.59 44.01 4.85
406 407 1.995626 GGAAGGGCTACTGGCAGGA 60.996 63.158 20.34 9.92 44.01 3.86
407 408 1.524482 GAAGGGCTACTGGCAGGAG 59.476 63.158 22.85 22.85 44.01 3.69
408 409 1.977293 GAAGGGCTACTGGCAGGAGG 61.977 65.000 27.50 13.21 44.01 4.30
409 410 4.182433 GGGCTACTGGCAGGAGGC 62.182 72.222 37.93 37.93 44.01 4.70
431 432 3.402681 CTGGGTGCGGTCCTCCAT 61.403 66.667 0.00 0.00 0.00 3.41
432 433 3.687321 CTGGGTGCGGTCCTCCATG 62.687 68.421 0.00 0.00 0.00 3.66
433 434 3.399181 GGGTGCGGTCCTCCATGA 61.399 66.667 0.00 0.00 0.00 3.07
434 435 2.125106 GGTGCGGTCCTCCATGAC 60.125 66.667 0.00 0.00 34.42 3.06
435 436 2.509336 GTGCGGTCCTCCATGACG 60.509 66.667 0.00 0.00 36.07 4.35
436 437 3.770040 TGCGGTCCTCCATGACGG 61.770 66.667 0.00 0.00 38.28 4.79
437 438 3.771160 GCGGTCCTCCATGACGGT 61.771 66.667 0.00 0.00 37.74 4.83
438 439 2.978824 CGGTCCTCCATGACGGTT 59.021 61.111 0.00 0.00 36.07 4.44
439 440 1.295423 CGGTCCTCCATGACGGTTT 59.705 57.895 0.00 0.00 36.07 3.27
440 441 1.019278 CGGTCCTCCATGACGGTTTG 61.019 60.000 0.00 0.00 36.07 2.93
441 442 0.036306 GGTCCTCCATGACGGTTTGT 59.964 55.000 0.00 0.00 36.07 2.83
442 443 1.544759 GGTCCTCCATGACGGTTTGTT 60.545 52.381 0.00 0.00 36.07 2.83
443 444 2.227194 GTCCTCCATGACGGTTTGTTT 58.773 47.619 0.00 0.00 35.57 2.83
444 445 3.404899 GTCCTCCATGACGGTTTGTTTA 58.595 45.455 0.00 0.00 35.57 2.01
445 446 3.435671 GTCCTCCATGACGGTTTGTTTAG 59.564 47.826 0.00 0.00 35.57 1.85
446 447 2.747446 CCTCCATGACGGTTTGTTTAGG 59.253 50.000 0.00 0.00 35.57 2.69
447 448 3.408634 CTCCATGACGGTTTGTTTAGGT 58.591 45.455 0.00 0.00 35.57 3.08
448 449 3.142951 TCCATGACGGTTTGTTTAGGTG 58.857 45.455 0.00 0.00 35.57 4.00
449 450 2.351350 CCATGACGGTTTGTTTAGGTGC 60.351 50.000 0.00 0.00 0.00 5.01
450 451 0.938713 TGACGGTTTGTTTAGGTGCG 59.061 50.000 0.00 0.00 0.00 5.34
451 452 0.236449 GACGGTTTGTTTAGGTGCGG 59.764 55.000 0.00 0.00 0.00 5.69
452 453 1.167781 ACGGTTTGTTTAGGTGCGGG 61.168 55.000 0.00 0.00 0.00 6.13
453 454 1.287815 GGTTTGTTTAGGTGCGGGC 59.712 57.895 0.00 0.00 0.00 6.13
454 455 1.287815 GTTTGTTTAGGTGCGGGCC 59.712 57.895 0.00 0.00 0.00 5.80
455 456 1.904378 TTTGTTTAGGTGCGGGCCC 60.904 57.895 13.57 13.57 0.00 5.80
456 457 2.642183 TTTGTTTAGGTGCGGGCCCA 62.642 55.000 24.92 0.00 0.00 5.36
457 458 2.282603 GTTTAGGTGCGGGCCCAA 60.283 61.111 24.92 6.27 0.00 4.12
458 459 2.282603 TTTAGGTGCGGGCCCAAC 60.283 61.111 24.92 19.37 0.00 3.77
459 460 3.871850 TTTAGGTGCGGGCCCAACC 62.872 63.158 29.08 29.08 37.93 3.77
468 469 4.747218 GGCCCAACCCGTCATAAA 57.253 55.556 0.00 0.00 0.00 1.40
469 470 2.186155 GGCCCAACCCGTCATAAAC 58.814 57.895 0.00 0.00 0.00 2.01
470 471 1.317431 GGCCCAACCCGTCATAAACC 61.317 60.000 0.00 0.00 0.00 3.27
471 472 1.650314 GCCCAACCCGTCATAAACCG 61.650 60.000 0.00 0.00 0.00 4.44
472 473 1.027792 CCCAACCCGTCATAAACCGG 61.028 60.000 0.00 0.00 43.82 5.28
473 474 0.321830 CCAACCCGTCATAAACCGGT 60.322 55.000 0.00 0.00 42.67 5.28
474 475 1.525941 CAACCCGTCATAAACCGGTT 58.474 50.000 15.86 15.86 46.41 4.44
475 476 1.881324 CAACCCGTCATAAACCGGTTT 59.119 47.619 33.42 33.42 44.09 3.27
476 477 3.072944 CAACCCGTCATAAACCGGTTTA 58.927 45.455 35.24 35.24 44.09 2.01
477 478 3.415457 ACCCGTCATAAACCGGTTTAA 57.585 42.857 36.33 22.44 42.67 1.52
478 479 3.954200 ACCCGTCATAAACCGGTTTAAT 58.046 40.909 36.33 23.82 42.67 1.40
479 480 4.334552 ACCCGTCATAAACCGGTTTAATT 58.665 39.130 36.33 22.44 42.67 1.40
480 481 4.766373 ACCCGTCATAAACCGGTTTAATTT 59.234 37.500 36.33 21.77 42.67 1.82
481 482 5.106197 ACCCGTCATAAACCGGTTTAATTTC 60.106 40.000 36.33 25.25 42.67 2.17
482 483 5.124297 CCCGTCATAAACCGGTTTAATTTCT 59.876 40.000 36.33 21.10 42.67 2.52
483 484 6.349528 CCCGTCATAAACCGGTTTAATTTCTT 60.350 38.462 36.33 20.44 42.67 2.52
484 485 7.148272 CCCGTCATAAACCGGTTTAATTTCTTA 60.148 37.037 36.33 18.75 42.67 2.10
485 486 7.906527 CCGTCATAAACCGGTTTAATTTCTTAG 59.093 37.037 36.33 22.54 38.38 2.18
486 487 7.427318 CGTCATAAACCGGTTTAATTTCTTAGC 59.573 37.037 36.33 19.59 38.38 3.09
487 488 8.238631 GTCATAAACCGGTTTAATTTCTTAGCA 58.761 33.333 36.33 16.89 38.38 3.49
488 489 8.794553 TCATAAACCGGTTTAATTTCTTAGCAA 58.205 29.630 36.33 16.70 38.38 3.91
489 490 9.581099 CATAAACCGGTTTAATTTCTTAGCAAT 57.419 29.630 36.33 18.07 38.38 3.56
490 491 7.883229 AAACCGGTTTAATTTCTTAGCAATG 57.117 32.000 30.76 0.00 0.00 2.82
491 492 6.584185 ACCGGTTTAATTTCTTAGCAATGT 57.416 33.333 0.00 0.00 0.00 2.71
492 493 6.386654 ACCGGTTTAATTTCTTAGCAATGTG 58.613 36.000 0.00 0.00 0.00 3.21
493 494 6.015772 ACCGGTTTAATTTCTTAGCAATGTGT 60.016 34.615 0.00 0.00 0.00 3.72
494 495 6.307800 CCGGTTTAATTTCTTAGCAATGTGTG 59.692 38.462 0.00 0.00 0.00 3.82
495 496 6.861055 CGGTTTAATTTCTTAGCAATGTGTGT 59.139 34.615 0.00 0.00 0.00 3.72
496 497 7.381139 CGGTTTAATTTCTTAGCAATGTGTGTT 59.619 33.333 0.00 0.00 0.00 3.32
497 498 9.040939 GGTTTAATTTCTTAGCAATGTGTGTTT 57.959 29.630 0.00 0.00 0.00 2.83
500 501 7.481275 AATTTCTTAGCAATGTGTGTTTTGG 57.519 32.000 0.00 0.00 0.00 3.28
501 502 4.582701 TCTTAGCAATGTGTGTTTTGGG 57.417 40.909 0.00 0.00 0.00 4.12
502 503 3.957497 TCTTAGCAATGTGTGTTTTGGGT 59.043 39.130 0.00 0.00 0.00 4.51
503 504 4.404073 TCTTAGCAATGTGTGTTTTGGGTT 59.596 37.500 0.00 0.00 0.00 4.11
504 505 3.625649 AGCAATGTGTGTTTTGGGTTT 57.374 38.095 0.00 0.00 0.00 3.27
505 506 3.949132 AGCAATGTGTGTTTTGGGTTTT 58.051 36.364 0.00 0.00 0.00 2.43
506 507 4.331108 AGCAATGTGTGTTTTGGGTTTTT 58.669 34.783 0.00 0.00 0.00 1.94
522 523 2.570442 TTTTTGAAACAGCCGACACC 57.430 45.000 0.00 0.00 0.00 4.16
523 524 0.378962 TTTTGAAACAGCCGACACCG 59.621 50.000 0.00 0.00 0.00 4.94
524 525 0.462225 TTTGAAACAGCCGACACCGA 60.462 50.000 0.00 0.00 38.22 4.69
525 526 0.462225 TTGAAACAGCCGACACCGAA 60.462 50.000 0.00 0.00 38.22 4.30
526 527 0.462225 TGAAACAGCCGACACCGAAA 60.462 50.000 0.00 0.00 38.22 3.46
527 528 0.234884 GAAACAGCCGACACCGAAAG 59.765 55.000 0.00 0.00 38.22 2.62
528 529 0.463116 AAACAGCCGACACCGAAAGT 60.463 50.000 0.00 0.00 38.22 2.66
541 542 4.181578 CACCGAAAGTGGTAGTTATCAGG 58.818 47.826 0.00 0.00 41.38 3.86
542 543 3.195661 CCGAAAGTGGTAGTTATCAGGC 58.804 50.000 0.00 0.00 0.00 4.85
543 544 3.369052 CCGAAAGTGGTAGTTATCAGGCA 60.369 47.826 0.00 0.00 0.00 4.75
544 545 3.617263 CGAAAGTGGTAGTTATCAGGCAC 59.383 47.826 0.00 0.00 0.00 5.01
545 546 4.575885 GAAAGTGGTAGTTATCAGGCACA 58.424 43.478 0.00 0.00 0.00 4.57
546 547 4.634012 AAGTGGTAGTTATCAGGCACAA 57.366 40.909 0.00 0.00 0.00 3.33
547 548 4.634012 AGTGGTAGTTATCAGGCACAAA 57.366 40.909 0.00 0.00 0.00 2.83
548 549 4.324267 AGTGGTAGTTATCAGGCACAAAC 58.676 43.478 0.00 0.00 0.00 2.93
549 550 4.069304 GTGGTAGTTATCAGGCACAAACA 58.931 43.478 0.00 0.00 0.00 2.83
550 551 4.517453 GTGGTAGTTATCAGGCACAAACAA 59.483 41.667 0.00 0.00 0.00 2.83
551 552 5.009210 GTGGTAGTTATCAGGCACAAACAAA 59.991 40.000 0.00 0.00 0.00 2.83
552 553 5.772672 TGGTAGTTATCAGGCACAAACAAAT 59.227 36.000 0.00 0.00 0.00 2.32
553 554 6.266558 TGGTAGTTATCAGGCACAAACAAATT 59.733 34.615 0.00 0.00 0.00 1.82
554 555 7.151976 GGTAGTTATCAGGCACAAACAAATTT 58.848 34.615 0.00 0.00 0.00 1.82
555 556 7.655732 GGTAGTTATCAGGCACAAACAAATTTT 59.344 33.333 0.00 0.00 0.00 1.82
556 557 9.040939 GTAGTTATCAGGCACAAACAAATTTTT 57.959 29.630 0.00 0.00 0.00 1.94
557 558 7.918643 AGTTATCAGGCACAAACAAATTTTTG 58.081 30.769 1.56 1.56 43.62 2.44
558 559 5.754543 ATCAGGCACAAACAAATTTTTGG 57.245 34.783 7.85 0.00 42.34 3.28
559 560 4.583871 TCAGGCACAAACAAATTTTTGGT 58.416 34.783 7.85 0.00 42.34 3.67
560 561 5.734720 TCAGGCACAAACAAATTTTTGGTA 58.265 33.333 7.85 0.00 42.34 3.25
561 562 5.814705 TCAGGCACAAACAAATTTTTGGTAG 59.185 36.000 7.85 0.08 42.34 3.18
562 563 5.584251 CAGGCACAAACAAATTTTTGGTAGT 59.416 36.000 7.85 0.62 42.34 2.73
563 564 6.093357 CAGGCACAAACAAATTTTTGGTAGTT 59.907 34.615 7.85 0.00 42.34 2.24
564 565 6.657117 AGGCACAAACAAATTTTTGGTAGTTT 59.343 30.769 7.85 2.80 42.34 2.66
565 566 7.175816 AGGCACAAACAAATTTTTGGTAGTTTT 59.824 29.630 7.85 0.00 42.34 2.43
566 567 7.810282 GGCACAAACAAATTTTTGGTAGTTTTT 59.190 29.630 7.85 0.00 42.34 1.94
586 587 5.874892 TTTTGAAACCATAACGCGAAAAG 57.125 34.783 15.93 0.00 0.00 2.27
587 588 4.555348 TTGAAACCATAACGCGAAAAGT 57.445 36.364 15.93 0.00 0.00 2.66
588 589 3.879427 TGAAACCATAACGCGAAAAGTG 58.121 40.909 15.93 3.86 0.00 3.16
589 590 2.981400 AACCATAACGCGAAAAGTGG 57.019 45.000 15.93 15.47 33.90 4.00
590 591 1.886886 ACCATAACGCGAAAAGTGGT 58.113 45.000 15.93 16.14 35.26 4.16
591 592 3.042871 ACCATAACGCGAAAAGTGGTA 57.957 42.857 15.93 0.00 38.13 3.25
592 593 3.401182 ACCATAACGCGAAAAGTGGTAA 58.599 40.909 15.93 0.00 38.13 2.85
593 594 4.004982 ACCATAACGCGAAAAGTGGTAAT 58.995 39.130 15.93 0.00 38.13 1.89
594 595 4.456566 ACCATAACGCGAAAAGTGGTAATT 59.543 37.500 15.93 0.00 38.13 1.40
595 596 5.048573 ACCATAACGCGAAAAGTGGTAATTT 60.049 36.000 15.93 0.00 38.13 1.82
596 597 5.859648 CCATAACGCGAAAAGTGGTAATTTT 59.140 36.000 15.93 0.00 35.96 1.82
597 598 7.022384 CCATAACGCGAAAAGTGGTAATTTTA 58.978 34.615 15.93 0.00 35.96 1.52
598 599 7.698970 CCATAACGCGAAAAGTGGTAATTTTAT 59.301 33.333 15.93 0.00 35.96 1.40
599 600 6.921332 AACGCGAAAAGTGGTAATTTTATG 57.079 33.333 15.93 0.00 30.22 1.90
600 601 4.854839 ACGCGAAAAGTGGTAATTTTATGC 59.145 37.500 15.93 0.00 32.22 3.14
601 602 5.092781 CGCGAAAAGTGGTAATTTTATGCT 58.907 37.500 0.00 0.00 32.85 3.79
602 603 6.128227 ACGCGAAAAGTGGTAATTTTATGCTA 60.128 34.615 15.93 0.00 32.85 3.49
603 604 6.910433 CGCGAAAAGTGGTAATTTTATGCTAT 59.090 34.615 0.00 0.00 32.85 2.97
604 605 7.431084 CGCGAAAAGTGGTAATTTTATGCTATT 59.569 33.333 0.00 0.00 32.85 1.73
605 606 8.743099 GCGAAAAGTGGTAATTTTATGCTATTC 58.257 33.333 0.00 0.00 32.55 1.75
606 607 9.781834 CGAAAAGTGGTAATTTTATGCTATTCA 57.218 29.630 0.00 0.00 30.22 2.57
610 611 8.142994 AGTGGTAATTTTATGCTATTCACTCG 57.857 34.615 0.00 0.00 0.00 4.18
611 612 7.769044 AGTGGTAATTTTATGCTATTCACTCGT 59.231 33.333 0.00 0.00 0.00 4.18
612 613 8.395633 GTGGTAATTTTATGCTATTCACTCGTT 58.604 33.333 0.00 0.00 0.00 3.85
613 614 9.602568 TGGTAATTTTATGCTATTCACTCGTTA 57.397 29.630 0.00 0.00 0.00 3.18
631 632 7.918033 CACTCGTTATCTATAGGCAATGGATAG 59.082 40.741 0.00 0.00 38.74 2.08
886 889 7.398834 GAATTAATTCCTTGCATGATTTCCG 57.601 36.000 16.05 0.00 0.00 4.30
969 972 4.215908 TCATCCGCTCCATATATACTCCC 58.784 47.826 0.00 0.00 0.00 4.30
983 986 0.106116 ACTCCCTCCGTCTCCCATAC 60.106 60.000 0.00 0.00 0.00 2.39
1006 1009 1.136891 GTATTTGGCAGCCCATGTTCC 59.863 52.381 9.64 0.00 41.78 3.62
1041 1044 6.127793 AGAAAGAATGGATTCCAATGGAGAG 58.872 40.000 9.98 0.00 36.95 3.20
1124 1127 3.612860 CACAGGCGTACATCAGAAAGTAC 59.387 47.826 6.50 6.50 37.75 2.73
1125 1128 3.510360 ACAGGCGTACATCAGAAAGTACT 59.490 43.478 12.29 0.00 38.69 2.73
1126 1129 4.703575 ACAGGCGTACATCAGAAAGTACTA 59.296 41.667 0.00 0.00 38.69 1.82
1127 1130 5.184479 ACAGGCGTACATCAGAAAGTACTAA 59.816 40.000 0.00 0.00 38.69 2.24
1128 1131 5.744345 CAGGCGTACATCAGAAAGTACTAAG 59.256 44.000 0.00 0.00 38.69 2.18
1129 1132 5.418209 AGGCGTACATCAGAAAGTACTAAGT 59.582 40.000 0.00 0.00 38.69 2.24
1130 1133 6.600822 AGGCGTACATCAGAAAGTACTAAGTA 59.399 38.462 0.00 0.00 38.69 2.24
1142 1145 7.991460 AGAAAGTACTAAGTAGTGCCTTTGTTT 59.009 33.333 16.39 6.58 39.36 2.83
1147 1150 3.452755 AGTAGTGCCTTTGTTTTTGCC 57.547 42.857 0.00 0.00 0.00 4.52
1156 1161 4.096231 GCCTTTGTTTTTGCCAAGTTGATT 59.904 37.500 3.87 0.00 0.00 2.57
1171 1176 6.634436 CCAAGTTGATTCAGTTCTTCTTTTCG 59.366 38.462 3.87 0.00 0.00 3.46
1174 1179 6.316390 AGTTGATTCAGTTCTTCTTTTCGTGT 59.684 34.615 0.00 0.00 0.00 4.49
1231 1236 5.007136 GCATGATAGTTACCTGCTTGAAGAC 59.993 44.000 0.00 0.00 0.00 3.01
1260 1265 1.621072 CCTCTGCAGTCTACCCTTCCT 60.621 57.143 14.67 0.00 0.00 3.36
1266 1271 2.183679 CAGTCTACCCTTCCTGAGCTT 58.816 52.381 0.00 0.00 0.00 3.74
1280 1285 4.043200 GCTTCGGCTGCCAACCAC 62.043 66.667 20.29 0.00 38.08 4.16
1290 1295 0.472044 TGCCAACCACTGTGCTCTAA 59.528 50.000 1.29 0.00 0.00 2.10
1338 1343 1.141645 CTGCAAGGTACGTTACGCAA 58.858 50.000 4.09 0.00 0.00 4.85
1340 1345 1.938577 TGCAAGGTACGTTACGCAAAA 59.061 42.857 4.09 0.00 0.00 2.44
1350 1355 3.125658 ACGTTACGCAAAACAACTTCTGT 59.874 39.130 4.09 0.00 41.27 3.41
1351 1356 3.477090 CGTTACGCAAAACAACTTCTGTG 59.523 43.478 0.00 0.00 38.67 3.66
1368 1378 8.110860 ACTTCTGTGGTATTTGATTTTAGTGG 57.889 34.615 0.00 0.00 0.00 4.00
1371 1381 8.786826 TCTGTGGTATTTGATTTTAGTGGTAG 57.213 34.615 0.00 0.00 0.00 3.18
1506 1516 3.309961 TCTGATGACAGCACAGAAGAC 57.690 47.619 0.00 0.00 43.17 3.01
1547 1557 1.478510 ACTGTGTTATGGCGAGGAGAG 59.521 52.381 0.00 0.00 0.00 3.20
1691 1701 2.548067 GGCTCACCGTTCTGAAGAAGAA 60.548 50.000 0.00 0.00 42.83 2.52
1692 1702 3.131396 GCTCACCGTTCTGAAGAAGAAA 58.869 45.455 0.00 0.00 46.51 2.52
1739 1749 1.638388 CCGCATCGCAAGCTGAAGAA 61.638 55.000 0.00 0.00 34.90 2.52
1805 1816 8.915036 GTCCATACTAGTTTTCCTATCTCTGAA 58.085 37.037 0.00 0.00 0.00 3.02
1822 1833 2.355132 CTGAATCTGAATCTGCCAGCAC 59.645 50.000 0.00 0.00 0.00 4.40
1842 1853 4.213482 GCACTTTACATCCGTTGTTTCTCT 59.787 41.667 0.00 0.00 39.87 3.10
1843 1854 5.679906 CACTTTACATCCGTTGTTTCTCTG 58.320 41.667 0.00 0.00 39.87 3.35
1871 1882 0.101219 CTCTGCGATGTCGGTCATGA 59.899 55.000 4.44 0.00 40.23 3.07
2045 2056 2.143925 GCCAGCTACAAAAAGAGACGT 58.856 47.619 0.00 0.00 0.00 4.34
2201 2249 9.459640 CACAAATTATGATAGCAGAAGAATTGG 57.540 33.333 12.70 5.37 29.26 3.16
2235 2283 6.751888 CCTGCTTGTATGGCAAAAATTACTAC 59.248 38.462 0.00 0.00 39.30 2.73
2238 2286 8.673711 TGCTTGTATGGCAAAAATTACTACTAG 58.326 33.333 0.00 0.00 36.53 2.57
2313 3069 7.877003 ACATCACGCTATATATGCTAGTATCC 58.123 38.462 0.00 0.00 0.00 2.59
2315 3071 9.220767 CATCACGCTATATATGCTAGTATCCTA 57.779 37.037 0.00 0.00 0.00 2.94
2420 3177 1.022982 TGCCGATGTCGACGTACTCT 61.023 55.000 10.95 0.00 43.02 3.24
2428 3185 1.128321 GTCGACGTACTCTGACAGGAC 59.872 57.143 0.00 0.00 31.47 3.85
2545 3302 2.532256 CCTCGTACGCCTCGTCGAT 61.532 63.158 11.24 0.00 41.54 3.59
2576 3333 2.202756 GTCCTGTCGATGTCGGCC 60.203 66.667 4.43 0.00 44.42 6.13
2596 3353 1.880340 CGAGCTTCTCCGACATGGC 60.880 63.158 0.00 0.00 37.80 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.821589 GTGGAGGCGGAGAAGCGG 62.822 72.222 0.00 0.00 38.18 5.52
17 18 2.415608 TAGTGGAGGCGGAGAAGCG 61.416 63.158 0.00 0.00 38.18 4.68
18 19 1.142097 GTAGTGGAGGCGGAGAAGC 59.858 63.158 0.00 0.00 0.00 3.86
19 20 1.817209 GGTAGTGGAGGCGGAGAAG 59.183 63.158 0.00 0.00 0.00 2.85
20 21 2.050350 CGGTAGTGGAGGCGGAGAA 61.050 63.158 0.00 0.00 0.00 2.87
21 22 2.439701 CGGTAGTGGAGGCGGAGA 60.440 66.667 0.00 0.00 0.00 3.71
22 23 4.208686 GCGGTAGTGGAGGCGGAG 62.209 72.222 0.00 0.00 0.00 4.63
25 26 4.208686 GAGGCGGTAGTGGAGGCG 62.209 72.222 0.00 0.00 35.47 5.52
26 27 3.851128 GGAGGCGGTAGTGGAGGC 61.851 72.222 0.00 0.00 0.00 4.70
27 28 2.042843 AGGAGGCGGTAGTGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
28 29 1.076632 AGAGGAGGCGGTAGTGGAG 60.077 63.158 0.00 0.00 0.00 3.86
29 30 1.076923 GAGAGGAGGCGGTAGTGGA 60.077 63.158 0.00 0.00 0.00 4.02
30 31 2.128507 GGAGAGGAGGCGGTAGTGG 61.129 68.421 0.00 0.00 0.00 4.00
31 32 2.128507 GGGAGAGGAGGCGGTAGTG 61.129 68.421 0.00 0.00 0.00 2.74
32 33 2.279408 GGGAGAGGAGGCGGTAGT 59.721 66.667 0.00 0.00 0.00 2.73
33 34 2.522193 GGGGAGAGGAGGCGGTAG 60.522 72.222 0.00 0.00 0.00 3.18
34 35 2.465010 TTTGGGGAGAGGAGGCGGTA 62.465 60.000 0.00 0.00 0.00 4.02
35 36 3.864983 TTTGGGGAGAGGAGGCGGT 62.865 63.158 0.00 0.00 0.00 5.68
36 37 2.330924 GATTTGGGGAGAGGAGGCGG 62.331 65.000 0.00 0.00 0.00 6.13
37 38 1.147153 GATTTGGGGAGAGGAGGCG 59.853 63.158 0.00 0.00 0.00 5.52
38 39 0.990818 AGGATTTGGGGAGAGGAGGC 60.991 60.000 0.00 0.00 0.00 4.70
39 40 1.135960 GAGGATTTGGGGAGAGGAGG 58.864 60.000 0.00 0.00 0.00 4.30
40 41 2.188818 AGAGGATTTGGGGAGAGGAG 57.811 55.000 0.00 0.00 0.00 3.69
41 42 2.046447 AGAAGAGGATTTGGGGAGAGGA 59.954 50.000 0.00 0.00 0.00 3.71
42 43 2.437651 GAGAAGAGGATTTGGGGAGAGG 59.562 54.545 0.00 0.00 0.00 3.69
43 44 2.437651 GGAGAAGAGGATTTGGGGAGAG 59.562 54.545 0.00 0.00 0.00 3.20
44 45 2.046447 AGGAGAAGAGGATTTGGGGAGA 59.954 50.000 0.00 0.00 0.00 3.71
45 46 2.437651 GAGGAGAAGAGGATTTGGGGAG 59.562 54.545 0.00 0.00 0.00 4.30
46 47 2.482494 GAGGAGAAGAGGATTTGGGGA 58.518 52.381 0.00 0.00 0.00 4.81
47 48 1.492599 GGAGGAGAAGAGGATTTGGGG 59.507 57.143 0.00 0.00 0.00 4.96
48 49 1.492599 GGGAGGAGAAGAGGATTTGGG 59.507 57.143 0.00 0.00 0.00 4.12
49 50 1.492599 GGGGAGGAGAAGAGGATTTGG 59.507 57.143 0.00 0.00 0.00 3.28
50 51 1.139853 CGGGGAGGAGAAGAGGATTTG 59.860 57.143 0.00 0.00 0.00 2.32
51 52 1.273896 ACGGGGAGGAGAAGAGGATTT 60.274 52.381 0.00 0.00 0.00 2.17
52 53 0.340208 ACGGGGAGGAGAAGAGGATT 59.660 55.000 0.00 0.00 0.00 3.01
53 54 1.146152 CTACGGGGAGGAGAAGAGGAT 59.854 57.143 0.00 0.00 30.12 3.24
54 55 0.551879 CTACGGGGAGGAGAAGAGGA 59.448 60.000 0.00 0.00 30.12 3.71
55 56 0.259356 ACTACGGGGAGGAGAAGAGG 59.741 60.000 0.00 0.00 33.99 3.69
56 57 1.213430 AGACTACGGGGAGGAGAAGAG 59.787 57.143 0.00 0.00 33.99 2.85
57 58 1.064611 CAGACTACGGGGAGGAGAAGA 60.065 57.143 0.00 0.00 33.99 2.87
58 59 1.341187 ACAGACTACGGGGAGGAGAAG 60.341 57.143 0.00 0.00 33.99 2.85
59 60 0.702902 ACAGACTACGGGGAGGAGAA 59.297 55.000 0.00 0.00 33.99 2.87
60 61 1.489649 CTACAGACTACGGGGAGGAGA 59.510 57.143 0.00 0.00 33.99 3.71
61 62 1.970092 CTACAGACTACGGGGAGGAG 58.030 60.000 0.00 0.00 36.66 3.69
62 63 0.106819 GCTACAGACTACGGGGAGGA 60.107 60.000 0.00 0.00 0.00 3.71
63 64 1.108132 GGCTACAGACTACGGGGAGG 61.108 65.000 0.00 0.00 0.00 4.30
64 65 1.108132 GGGCTACAGACTACGGGGAG 61.108 65.000 0.00 0.00 0.00 4.30
65 66 1.076485 GGGCTACAGACTACGGGGA 60.076 63.158 0.00 0.00 0.00 4.81
66 67 2.487532 CGGGCTACAGACTACGGGG 61.488 68.421 0.00 0.00 0.00 5.73
67 68 1.452651 TCGGGCTACAGACTACGGG 60.453 63.158 0.00 0.00 0.00 5.28
68 69 1.726265 GTCGGGCTACAGACTACGG 59.274 63.158 0.00 0.00 34.74 4.02
69 70 1.351012 CGTCGGGCTACAGACTACG 59.649 63.158 0.00 0.00 35.38 3.51
70 71 1.063811 GCGTCGGGCTACAGACTAC 59.936 63.158 0.00 0.00 39.11 2.73
71 72 2.466982 CGCGTCGGGCTACAGACTA 61.467 63.158 0.00 0.00 40.44 2.59
72 73 3.812019 CGCGTCGGGCTACAGACT 61.812 66.667 0.00 0.00 40.44 3.24
82 83 3.506096 TAGAGGACAGCGCGTCGG 61.506 66.667 20.45 3.35 46.42 4.79
83 84 2.277373 GTAGAGGACAGCGCGTCG 60.277 66.667 20.45 9.16 46.42 5.12
84 85 2.277373 CGTAGAGGACAGCGCGTC 60.277 66.667 19.52 19.52 44.57 5.19
85 86 3.812019 CCGTAGAGGACAGCGCGT 61.812 66.667 8.43 2.53 45.00 6.01
102 103 0.544120 ATGGCTCTAGGGCTCTAGGC 60.544 60.000 20.66 20.29 42.42 3.93
103 104 1.265236 CATGGCTCTAGGGCTCTAGG 58.735 60.000 20.66 12.12 42.42 3.02
104 105 1.265236 CCATGGCTCTAGGGCTCTAG 58.735 60.000 15.01 15.01 43.27 2.43
105 106 0.833834 GCCATGGCTCTAGGGCTCTA 60.834 60.000 29.98 1.62 43.09 2.43
106 107 2.146061 GCCATGGCTCTAGGGCTCT 61.146 63.158 29.98 0.00 43.09 4.09
107 108 2.429494 GCCATGGCTCTAGGGCTC 59.571 66.667 29.98 5.29 43.09 4.70
108 109 3.554342 CGCCATGGCTCTAGGGCT 61.554 66.667 33.07 0.00 44.23 5.19
110 111 4.632974 GGCGCCATGGCTCTAGGG 62.633 72.222 33.07 18.06 40.72 3.53
111 112 3.865383 TGGCGCCATGGCTCTAGG 61.865 66.667 33.07 18.80 45.14 3.02
112 113 2.590007 GTGGCGCCATGGCTCTAG 60.590 66.667 35.23 19.18 45.14 2.43
113 114 3.083349 AGTGGCGCCATGGCTCTA 61.083 61.111 35.23 22.14 44.17 2.43
114 115 4.790962 CAGTGGCGCCATGGCTCT 62.791 66.667 35.23 21.98 46.59 4.09
177 178 4.767255 CCTGGACCCTGCACGAGC 62.767 72.222 0.00 0.00 42.57 5.03
178 179 4.767255 GCCTGGACCCTGCACGAG 62.767 72.222 0.00 0.00 0.00 4.18
181 182 3.618780 CTCTGCCTGGACCCTGCAC 62.619 68.421 0.00 0.00 0.00 4.57
182 183 3.324930 CTCTGCCTGGACCCTGCA 61.325 66.667 0.00 5.07 0.00 4.41
183 184 4.106925 CCTCTGCCTGGACCCTGC 62.107 72.222 0.00 0.00 0.00 4.85
184 185 2.608988 ACCTCTGCCTGGACCCTG 60.609 66.667 0.00 0.00 0.00 4.45
185 186 2.608988 CACCTCTGCCTGGACCCT 60.609 66.667 0.00 0.00 0.00 4.34
186 187 3.721706 CCACCTCTGCCTGGACCC 61.722 72.222 0.00 0.00 0.00 4.46
187 188 3.721706 CCCACCTCTGCCTGGACC 61.722 72.222 0.00 0.00 0.00 4.46
188 189 2.930562 ACCCACCTCTGCCTGGAC 60.931 66.667 0.00 0.00 0.00 4.02
189 190 2.607750 GACCCACCTCTGCCTGGA 60.608 66.667 0.00 0.00 0.00 3.86
190 191 4.087892 CGACCCACCTCTGCCTGG 62.088 72.222 0.00 0.00 0.00 4.45
191 192 4.767255 GCGACCCACCTCTGCCTG 62.767 72.222 0.00 0.00 0.00 4.85
216 217 4.715523 TTAGCCGCCAGTGCCACC 62.716 66.667 0.00 0.00 0.00 4.61
217 218 3.431725 GTTAGCCGCCAGTGCCAC 61.432 66.667 0.00 0.00 0.00 5.01
218 219 3.605749 GAGTTAGCCGCCAGTGCCA 62.606 63.158 0.00 0.00 0.00 4.92
219 220 2.820037 GAGTTAGCCGCCAGTGCC 60.820 66.667 0.00 0.00 0.00 5.01
220 221 2.103042 CAGAGTTAGCCGCCAGTGC 61.103 63.158 0.00 0.00 0.00 4.40
221 222 1.448540 CCAGAGTTAGCCGCCAGTG 60.449 63.158 0.00 0.00 0.00 3.66
222 223 2.982130 CCAGAGTTAGCCGCCAGT 59.018 61.111 0.00 0.00 0.00 4.00
223 224 2.512515 GCCAGAGTTAGCCGCCAG 60.513 66.667 0.00 0.00 0.00 4.85
224 225 3.315142 CTGCCAGAGTTAGCCGCCA 62.315 63.158 0.00 0.00 0.00 5.69
225 226 2.512515 CTGCCAGAGTTAGCCGCC 60.513 66.667 0.00 0.00 0.00 6.13
226 227 2.512515 CCTGCCAGAGTTAGCCGC 60.513 66.667 0.00 0.00 0.00 6.53
227 228 1.142748 CTCCTGCCAGAGTTAGCCG 59.857 63.158 0.00 0.00 0.00 5.52
228 229 1.524482 CCTCCTGCCAGAGTTAGCC 59.476 63.158 0.00 0.00 31.53 3.93
229 230 1.153269 GCCTCCTGCCAGAGTTAGC 60.153 63.158 0.00 0.00 31.53 3.09
252 253 3.402681 ATGGAGGACCGCACCCAG 61.403 66.667 0.00 0.00 39.42 4.45
253 254 3.716195 CATGGAGGACCGCACCCA 61.716 66.667 0.00 0.00 39.42 4.51
254 255 4.489771 CCATGGAGGACCGCACCC 62.490 72.222 5.56 0.00 41.22 4.61
273 274 4.785453 CTCCCCTTGCTGGACGCC 62.785 72.222 0.00 0.00 38.35 5.68
274 275 4.785453 CCTCCCCTTGCTGGACGC 62.785 72.222 0.00 0.00 38.35 5.19
275 276 4.101448 CCCTCCCCTTGCTGGACG 62.101 72.222 0.00 0.00 38.35 4.79
276 277 2.610859 TCCCTCCCCTTGCTGGAC 60.611 66.667 0.00 0.00 38.35 4.02
277 278 2.285668 CTCCCTCCCCTTGCTGGA 60.286 66.667 0.00 0.00 38.35 3.86
278 279 4.120755 GCTCCCTCCCCTTGCTGG 62.121 72.222 0.00 0.00 0.00 4.85
279 280 4.120755 GGCTCCCTCCCCTTGCTG 62.121 72.222 0.00 0.00 0.00 4.41
280 281 3.978241 ATGGCTCCCTCCCCTTGCT 62.978 63.158 0.00 0.00 0.00 3.91
281 282 3.424105 ATGGCTCCCTCCCCTTGC 61.424 66.667 0.00 0.00 0.00 4.01
282 283 2.599597 CATGGCTCCCTCCCCTTG 59.400 66.667 0.00 0.00 0.00 3.61
283 284 2.697644 CCATGGCTCCCTCCCCTT 60.698 66.667 0.00 0.00 0.00 3.95
304 305 3.385384 TCAGGAGCTCGTGGCCAG 61.385 66.667 30.36 10.01 43.05 4.85
305 306 3.695606 GTCAGGAGCTCGTGGCCA 61.696 66.667 30.36 13.34 43.05 5.36
306 307 4.803426 CGTCAGGAGCTCGTGGCC 62.803 72.222 29.49 20.91 43.05 5.36
307 308 2.697761 TACGTCAGGAGCTCGTGGC 61.698 63.158 30.36 28.69 38.27 5.01
308 309 1.136984 GTACGTCAGGAGCTCGTGG 59.863 63.158 30.36 20.05 38.27 4.94
309 310 0.097325 GAGTACGTCAGGAGCTCGTG 59.903 60.000 26.72 26.72 38.27 4.35
310 311 1.360194 CGAGTACGTCAGGAGCTCGT 61.360 60.000 7.83 5.12 42.54 4.18
311 312 1.082679 TCGAGTACGTCAGGAGCTCG 61.083 60.000 7.83 3.83 46.97 5.03
312 313 0.374410 GTCGAGTACGTCAGGAGCTC 59.626 60.000 4.71 4.71 40.69 4.09
313 314 1.360194 CGTCGAGTACGTCAGGAGCT 61.360 60.000 0.00 0.00 46.72 4.09
314 315 1.060622 CGTCGAGTACGTCAGGAGC 59.939 63.158 0.00 0.00 46.72 4.70
323 324 1.579626 CGCGGTCTTCGTCGAGTAC 60.580 63.158 0.00 0.00 41.72 2.73
324 325 2.780643 CGCGGTCTTCGTCGAGTA 59.219 61.111 0.00 0.00 41.72 2.59
325 326 4.755614 GCGCGGTCTTCGTCGAGT 62.756 66.667 8.83 0.00 41.72 4.18
340 341 4.856607 GAGCTCCCTTCCGTCGCG 62.857 72.222 0.87 0.00 0.00 5.87
341 342 4.516195 GGAGCTCCCTTCCGTCGC 62.516 72.222 23.19 0.00 0.00 5.19
342 343 3.068691 TGGAGCTCCCTTCCGTCG 61.069 66.667 29.95 0.00 37.54 5.12
343 344 2.579738 GTGGAGCTCCCTTCCGTC 59.420 66.667 29.95 7.78 37.54 4.79
344 345 3.382832 CGTGGAGCTCCCTTCCGT 61.383 66.667 29.95 0.00 37.54 4.69
345 346 4.148825 CCGTGGAGCTCCCTTCCG 62.149 72.222 29.95 23.37 37.54 4.30
346 347 2.245438 CTTCCGTGGAGCTCCCTTCC 62.245 65.000 29.95 13.73 35.38 3.46
347 348 1.219393 CTTCCGTGGAGCTCCCTTC 59.781 63.158 29.95 18.13 35.38 3.46
348 349 2.294078 CCTTCCGTGGAGCTCCCTT 61.294 63.158 29.95 0.00 35.38 3.95
349 350 2.685380 CCTTCCGTGGAGCTCCCT 60.685 66.667 29.95 0.00 35.38 4.20
350 351 3.787001 CCCTTCCGTGGAGCTCCC 61.787 72.222 29.95 19.25 34.29 4.30
351 352 4.475135 GCCCTTCCGTGGAGCTCC 62.475 72.222 26.78 26.78 0.00 4.70
352 353 2.058595 TAGCCCTTCCGTGGAGCTC 61.059 63.158 4.71 4.71 35.95 4.09
353 354 2.038975 TAGCCCTTCCGTGGAGCT 59.961 61.111 6.41 6.41 37.39 4.09
354 355 2.187163 GTAGCCCTTCCGTGGAGC 59.813 66.667 0.00 0.00 0.00 4.70
355 356 1.517832 CAGTAGCCCTTCCGTGGAG 59.482 63.158 0.00 0.00 0.00 3.86
356 357 1.987855 CCAGTAGCCCTTCCGTGGA 60.988 63.158 0.00 0.00 0.00 4.02
357 358 2.584608 CCAGTAGCCCTTCCGTGG 59.415 66.667 0.00 0.00 0.00 4.94
358 359 2.125106 GCCAGTAGCCCTTCCGTG 60.125 66.667 0.00 0.00 34.35 4.94
368 369 4.577246 GGAGCTCGCGGCCAGTAG 62.577 72.222 6.13 0.00 43.05 2.57
377 378 4.821589 CCCTTCCGTGGAGCTCGC 62.822 72.222 7.83 2.06 0.00 5.03
378 379 4.821589 GCCCTTCCGTGGAGCTCG 62.822 72.222 7.83 0.00 0.00 5.03
379 380 2.058595 TAGCCCTTCCGTGGAGCTC 61.059 63.158 4.71 4.71 35.95 4.09
380 381 2.038975 TAGCCCTTCCGTGGAGCT 59.961 61.111 6.41 6.41 37.39 4.09
381 382 2.187163 GTAGCCCTTCCGTGGAGC 59.813 66.667 0.00 0.00 0.00 4.70
382 383 1.517832 CAGTAGCCCTTCCGTGGAG 59.482 63.158 0.00 0.00 0.00 3.86
383 384 1.987855 CCAGTAGCCCTTCCGTGGA 60.988 63.158 0.00 0.00 0.00 4.02
384 385 2.584608 CCAGTAGCCCTTCCGTGG 59.415 66.667 0.00 0.00 0.00 4.94
385 386 2.125106 GCCAGTAGCCCTTCCGTG 60.125 66.667 0.00 0.00 34.35 4.94
386 387 2.606519 TGCCAGTAGCCCTTCCGT 60.607 61.111 0.00 0.00 42.71 4.69
387 388 2.187946 CTGCCAGTAGCCCTTCCG 59.812 66.667 0.00 0.00 42.71 4.30
388 389 1.977293 CTCCTGCCAGTAGCCCTTCC 61.977 65.000 0.00 0.00 42.71 3.46
389 390 1.524482 CTCCTGCCAGTAGCCCTTC 59.476 63.158 0.00 0.00 42.71 3.46
390 391 1.997874 CCTCCTGCCAGTAGCCCTT 60.998 63.158 0.00 0.00 42.71 3.95
391 392 2.366167 CCTCCTGCCAGTAGCCCT 60.366 66.667 0.00 0.00 42.71 5.19
392 393 4.182433 GCCTCCTGCCAGTAGCCC 62.182 72.222 0.00 0.00 42.71 5.19
414 415 3.402681 ATGGAGGACCGCACCCAG 61.403 66.667 0.00 0.00 39.42 4.45
415 416 3.716195 CATGGAGGACCGCACCCA 61.716 66.667 0.00 0.00 39.42 4.51
416 417 3.399181 TCATGGAGGACCGCACCC 61.399 66.667 0.00 0.00 39.42 4.61
417 418 2.125106 GTCATGGAGGACCGCACC 60.125 66.667 0.00 0.00 39.42 5.01
418 419 2.509336 CGTCATGGAGGACCGCAC 60.509 66.667 0.00 0.00 39.42 5.34
419 420 3.770040 CCGTCATGGAGGACCGCA 61.770 66.667 0.00 0.00 42.00 5.69
420 421 2.798148 AAACCGTCATGGAGGACCGC 62.798 60.000 13.15 0.00 42.00 5.68
421 422 1.019278 CAAACCGTCATGGAGGACCG 61.019 60.000 13.15 0.00 42.00 4.79
422 423 0.036306 ACAAACCGTCATGGAGGACC 59.964 55.000 13.15 0.00 42.00 4.46
423 424 1.892209 AACAAACCGTCATGGAGGAC 58.108 50.000 13.15 0.00 42.00 3.85
424 425 2.649531 AAACAAACCGTCATGGAGGA 57.350 45.000 13.15 0.00 42.00 3.71
425 426 2.747446 CCTAAACAAACCGTCATGGAGG 59.253 50.000 0.00 5.93 42.00 4.30
426 427 3.188460 CACCTAAACAAACCGTCATGGAG 59.812 47.826 0.00 0.00 42.00 3.86
427 428 3.142951 CACCTAAACAAACCGTCATGGA 58.857 45.455 0.00 0.00 42.00 3.41
428 429 2.351350 GCACCTAAACAAACCGTCATGG 60.351 50.000 0.00 0.00 46.41 3.66
429 430 2.664424 CGCACCTAAACAAACCGTCATG 60.664 50.000 0.00 0.00 0.00 3.07
430 431 1.533731 CGCACCTAAACAAACCGTCAT 59.466 47.619 0.00 0.00 0.00 3.06
431 432 0.938713 CGCACCTAAACAAACCGTCA 59.061 50.000 0.00 0.00 0.00 4.35
432 433 0.236449 CCGCACCTAAACAAACCGTC 59.764 55.000 0.00 0.00 0.00 4.79
433 434 1.167781 CCCGCACCTAAACAAACCGT 61.168 55.000 0.00 0.00 0.00 4.83
434 435 1.577421 CCCGCACCTAAACAAACCG 59.423 57.895 0.00 0.00 0.00 4.44
435 436 1.287815 GCCCGCACCTAAACAAACC 59.712 57.895 0.00 0.00 0.00 3.27
436 437 1.287815 GGCCCGCACCTAAACAAAC 59.712 57.895 0.00 0.00 0.00 2.93
437 438 1.904378 GGGCCCGCACCTAAACAAA 60.904 57.895 5.69 0.00 0.00 2.83
438 439 2.282603 GGGCCCGCACCTAAACAA 60.283 61.111 5.69 0.00 0.00 2.83
439 440 3.134703 TTGGGCCCGCACCTAAACA 62.135 57.895 19.37 0.00 0.00 2.83
440 441 2.282603 TTGGGCCCGCACCTAAAC 60.283 61.111 19.37 0.00 0.00 2.01
441 442 2.282603 GTTGGGCCCGCACCTAAA 60.283 61.111 19.37 0.00 31.25 1.85
442 443 4.354162 GGTTGGGCCCGCACCTAA 62.354 66.667 28.71 10.54 0.00 2.69
451 452 1.317431 GGTTTATGACGGGTTGGGCC 61.317 60.000 0.00 0.00 0.00 5.80
452 453 1.650314 CGGTTTATGACGGGTTGGGC 61.650 60.000 0.00 0.00 0.00 5.36
453 454 1.027792 CCGGTTTATGACGGGTTGGG 61.028 60.000 0.00 0.00 46.08 4.12
454 455 2.473457 CCGGTTTATGACGGGTTGG 58.527 57.895 0.00 0.00 46.08 3.77
460 461 7.427318 GCTAAGAAATTAAACCGGTTTATGACG 59.573 37.037 34.14 19.55 35.27 4.35
461 462 8.238631 TGCTAAGAAATTAAACCGGTTTATGAC 58.761 33.333 34.14 24.74 35.27 3.06
462 463 8.338072 TGCTAAGAAATTAAACCGGTTTATGA 57.662 30.769 34.14 23.49 35.27 2.15
463 464 8.973835 TTGCTAAGAAATTAAACCGGTTTATG 57.026 30.769 34.14 18.96 35.27 1.90
464 465 9.581099 CATTGCTAAGAAATTAAACCGGTTTAT 57.419 29.630 34.14 22.75 35.27 1.40
465 466 8.578151 ACATTGCTAAGAAATTAAACCGGTTTA 58.422 29.630 31.25 31.25 34.23 2.01
466 467 7.383843 CACATTGCTAAGAAATTAAACCGGTTT 59.616 33.333 33.42 33.42 36.63 3.27
467 468 6.866248 CACATTGCTAAGAAATTAAACCGGTT 59.134 34.615 15.86 15.86 0.00 4.44
468 469 6.015772 ACACATTGCTAAGAAATTAAACCGGT 60.016 34.615 0.00 0.00 0.00 5.28
469 470 6.307800 CACACATTGCTAAGAAATTAAACCGG 59.692 38.462 0.00 0.00 0.00 5.28
470 471 6.861055 ACACACATTGCTAAGAAATTAAACCG 59.139 34.615 0.00 0.00 0.00 4.44
471 472 8.587952 AACACACATTGCTAAGAAATTAAACC 57.412 30.769 0.00 0.00 0.00 3.27
474 475 9.039870 CCAAAACACACATTGCTAAGAAATTAA 57.960 29.630 0.00 0.00 0.00 1.40
475 476 7.655328 CCCAAAACACACATTGCTAAGAAATTA 59.345 33.333 0.00 0.00 0.00 1.40
476 477 6.482973 CCCAAAACACACATTGCTAAGAAATT 59.517 34.615 0.00 0.00 0.00 1.82
477 478 5.990996 CCCAAAACACACATTGCTAAGAAAT 59.009 36.000 0.00 0.00 0.00 2.17
478 479 5.105146 ACCCAAAACACACATTGCTAAGAAA 60.105 36.000 0.00 0.00 0.00 2.52
479 480 4.404073 ACCCAAAACACACATTGCTAAGAA 59.596 37.500 0.00 0.00 0.00 2.52
480 481 3.957497 ACCCAAAACACACATTGCTAAGA 59.043 39.130 0.00 0.00 0.00 2.10
481 482 4.320608 ACCCAAAACACACATTGCTAAG 57.679 40.909 0.00 0.00 0.00 2.18
482 483 4.744795 AACCCAAAACACACATTGCTAA 57.255 36.364 0.00 0.00 0.00 3.09
483 484 4.744795 AAACCCAAAACACACATTGCTA 57.255 36.364 0.00 0.00 0.00 3.49
484 485 3.625649 AAACCCAAAACACACATTGCT 57.374 38.095 0.00 0.00 0.00 3.91
485 486 4.693538 AAAAACCCAAAACACACATTGC 57.306 36.364 0.00 0.00 0.00 3.56
503 504 1.202200 CGGTGTCGGCTGTTTCAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
504 505 0.378962 CGGTGTCGGCTGTTTCAAAA 59.621 50.000 0.00 0.00 0.00 2.44
505 506 0.462225 TCGGTGTCGGCTGTTTCAAA 60.462 50.000 0.00 0.00 36.95 2.69
506 507 0.462225 TTCGGTGTCGGCTGTTTCAA 60.462 50.000 0.00 0.00 36.95 2.69
507 508 0.462225 TTTCGGTGTCGGCTGTTTCA 60.462 50.000 0.00 0.00 36.95 2.69
508 509 0.234884 CTTTCGGTGTCGGCTGTTTC 59.765 55.000 0.00 0.00 36.95 2.78
509 510 0.463116 ACTTTCGGTGTCGGCTGTTT 60.463 50.000 0.00 0.00 36.95 2.83
510 511 1.145377 ACTTTCGGTGTCGGCTGTT 59.855 52.632 0.00 0.00 36.95 3.16
511 512 1.594293 CACTTTCGGTGTCGGCTGT 60.594 57.895 0.00 0.00 40.79 4.40
512 513 2.317609 CCACTTTCGGTGTCGGCTG 61.318 63.158 0.00 0.00 43.94 4.85
513 514 1.466025 TACCACTTTCGGTGTCGGCT 61.466 55.000 0.00 0.00 43.94 5.52
514 515 1.005867 TACCACTTTCGGTGTCGGC 60.006 57.895 0.00 0.00 43.94 5.54
515 516 0.316204 ACTACCACTTTCGGTGTCGG 59.684 55.000 0.00 0.00 43.94 4.79
516 517 2.144482 AACTACCACTTTCGGTGTCG 57.856 50.000 0.00 0.00 43.94 4.35
517 518 4.813027 TGATAACTACCACTTTCGGTGTC 58.187 43.478 0.00 0.00 43.94 3.67
518 519 4.322499 CCTGATAACTACCACTTTCGGTGT 60.322 45.833 0.00 0.00 43.94 4.16
519 520 4.181578 CCTGATAACTACCACTTTCGGTG 58.818 47.826 0.00 0.00 44.96 4.94
520 521 3.369157 GCCTGATAACTACCACTTTCGGT 60.369 47.826 0.00 0.00 43.46 4.69
521 522 3.195661 GCCTGATAACTACCACTTTCGG 58.804 50.000 0.00 0.00 0.00 4.30
522 523 3.617263 GTGCCTGATAACTACCACTTTCG 59.383 47.826 0.00 0.00 0.00 3.46
523 524 4.575885 TGTGCCTGATAACTACCACTTTC 58.424 43.478 0.00 0.00 0.00 2.62
524 525 4.634012 TGTGCCTGATAACTACCACTTT 57.366 40.909 0.00 0.00 0.00 2.66
525 526 4.634012 TTGTGCCTGATAACTACCACTT 57.366 40.909 0.00 0.00 0.00 3.16
526 527 4.202419 TGTTTGTGCCTGATAACTACCACT 60.202 41.667 0.00 0.00 0.00 4.00
527 528 4.069304 TGTTTGTGCCTGATAACTACCAC 58.931 43.478 0.00 0.00 0.00 4.16
528 529 4.359434 TGTTTGTGCCTGATAACTACCA 57.641 40.909 0.00 0.00 0.00 3.25
529 530 5.699097 TTTGTTTGTGCCTGATAACTACC 57.301 39.130 0.00 0.00 0.00 3.18
530 531 8.587952 AAAATTTGTTTGTGCCTGATAACTAC 57.412 30.769 0.00 0.00 0.00 2.73
531 532 9.039870 CAAAAATTTGTTTGTGCCTGATAACTA 57.960 29.630 0.00 0.00 34.43 2.24
532 533 7.012232 CCAAAAATTTGTTTGTGCCTGATAACT 59.988 33.333 5.27 0.00 36.87 2.24
533 534 7.131565 CCAAAAATTTGTTTGTGCCTGATAAC 58.868 34.615 5.27 0.00 36.87 1.89
534 535 6.825721 ACCAAAAATTTGTTTGTGCCTGATAA 59.174 30.769 5.27 0.00 36.87 1.75
535 536 6.352516 ACCAAAAATTTGTTTGTGCCTGATA 58.647 32.000 5.27 0.00 36.87 2.15
536 537 5.192176 ACCAAAAATTTGTTTGTGCCTGAT 58.808 33.333 5.27 0.00 36.87 2.90
537 538 4.583871 ACCAAAAATTTGTTTGTGCCTGA 58.416 34.783 5.27 0.00 36.87 3.86
538 539 4.961435 ACCAAAAATTTGTTTGTGCCTG 57.039 36.364 5.27 0.00 36.87 4.85
539 540 5.739959 ACTACCAAAAATTTGTTTGTGCCT 58.260 33.333 5.27 0.00 36.87 4.75
540 541 6.429791 AACTACCAAAAATTTGTTTGTGCC 57.570 33.333 5.27 0.00 36.87 5.01
541 542 8.735303 AAAAACTACCAAAAATTTGTTTGTGC 57.265 26.923 5.27 0.00 36.87 4.57
563 564 5.805994 ACTTTTCGCGTTATGGTTTCAAAAA 59.194 32.000 5.77 0.00 0.00 1.94
564 565 5.230306 CACTTTTCGCGTTATGGTTTCAAAA 59.770 36.000 5.77 0.23 0.00 2.44
565 566 4.735822 CACTTTTCGCGTTATGGTTTCAAA 59.264 37.500 5.77 0.00 0.00 2.69
566 567 4.283678 CACTTTTCGCGTTATGGTTTCAA 58.716 39.130 5.77 0.00 0.00 2.69
567 568 3.304123 CCACTTTTCGCGTTATGGTTTCA 60.304 43.478 5.77 0.00 0.00 2.69
568 569 3.231160 CCACTTTTCGCGTTATGGTTTC 58.769 45.455 5.77 0.00 0.00 2.78
569 570 2.619646 ACCACTTTTCGCGTTATGGTTT 59.380 40.909 5.77 0.00 37.12 3.27
570 571 2.223745 ACCACTTTTCGCGTTATGGTT 58.776 42.857 5.77 0.00 37.12 3.67
571 572 1.886886 ACCACTTTTCGCGTTATGGT 58.113 45.000 5.77 11.45 35.60 3.55
572 573 4.609691 ATTACCACTTTTCGCGTTATGG 57.390 40.909 5.77 10.79 0.00 2.74
573 574 6.921332 AAAATTACCACTTTTCGCGTTATG 57.079 33.333 5.77 0.21 0.00 1.90
574 575 7.219344 GCATAAAATTACCACTTTTCGCGTTAT 59.781 33.333 5.77 0.00 0.00 1.89
575 576 6.523893 GCATAAAATTACCACTTTTCGCGTTA 59.476 34.615 5.77 0.00 0.00 3.18
576 577 5.343860 GCATAAAATTACCACTTTTCGCGTT 59.656 36.000 5.77 0.00 0.00 4.84
577 578 4.854839 GCATAAAATTACCACTTTTCGCGT 59.145 37.500 5.77 0.00 0.00 6.01
578 579 5.092781 AGCATAAAATTACCACTTTTCGCG 58.907 37.500 0.00 0.00 33.09 5.87
579 580 8.628882 AATAGCATAAAATTACCACTTTTCGC 57.371 30.769 0.00 0.00 0.00 4.70
580 581 9.781834 TGAATAGCATAAAATTACCACTTTTCG 57.218 29.630 0.00 0.00 0.00 3.46
584 585 8.612619 CGAGTGAATAGCATAAAATTACCACTT 58.387 33.333 0.00 0.00 32.15 3.16
585 586 7.769044 ACGAGTGAATAGCATAAAATTACCACT 59.231 33.333 0.00 0.00 34.34 4.00
586 587 7.916552 ACGAGTGAATAGCATAAAATTACCAC 58.083 34.615 0.00 0.00 0.00 4.16
587 588 8.500753 AACGAGTGAATAGCATAAAATTACCA 57.499 30.769 0.00 0.00 0.00 3.25
596 597 8.622157 GCCTATAGATAACGAGTGAATAGCATA 58.378 37.037 0.00 0.00 0.00 3.14
597 598 7.122799 TGCCTATAGATAACGAGTGAATAGCAT 59.877 37.037 0.00 0.00 0.00 3.79
598 599 6.433093 TGCCTATAGATAACGAGTGAATAGCA 59.567 38.462 0.00 0.00 0.00 3.49
599 600 6.853720 TGCCTATAGATAACGAGTGAATAGC 58.146 40.000 0.00 0.00 0.00 2.97
600 601 9.295214 CATTGCCTATAGATAACGAGTGAATAG 57.705 37.037 0.00 0.00 0.00 1.73
601 602 8.251026 CCATTGCCTATAGATAACGAGTGAATA 58.749 37.037 0.00 0.00 0.00 1.75
602 603 7.039011 TCCATTGCCTATAGATAACGAGTGAAT 60.039 37.037 0.00 0.00 0.00 2.57
603 604 6.266786 TCCATTGCCTATAGATAACGAGTGAA 59.733 38.462 0.00 0.00 0.00 3.18
604 605 5.773176 TCCATTGCCTATAGATAACGAGTGA 59.227 40.000 0.00 0.00 0.00 3.41
605 606 6.025749 TCCATTGCCTATAGATAACGAGTG 57.974 41.667 0.00 0.00 0.00 3.51
606 607 6.859112 ATCCATTGCCTATAGATAACGAGT 57.141 37.500 0.00 0.00 0.00 4.18
607 608 8.001881 ACTATCCATTGCCTATAGATAACGAG 57.998 38.462 0.00 0.00 0.00 4.18
608 609 7.956328 ACTATCCATTGCCTATAGATAACGA 57.044 36.000 0.00 0.00 0.00 3.85
648 649 5.505181 ACTGTAAGACTTTCATCACCCAT 57.495 39.130 0.00 0.00 37.43 4.00
704 705 2.010145 TTCGGCTAGTCTGCATGTTC 57.990 50.000 0.00 0.00 34.04 3.18
886 889 8.258708 AGGTAGATGGAAACGGCTAATAATATC 58.741 37.037 0.00 0.00 0.00 1.63
969 972 2.251409 TACTCGTATGGGAGACGGAG 57.749 55.000 0.00 0.00 40.70 4.63
983 986 0.664761 CATGGGCTGCCAAATACTCG 59.335 55.000 22.05 0.00 0.00 4.18
1006 1009 8.090214 GGAATCCATTCTTTCTAGAGAGATCTG 58.910 40.741 13.38 13.03 37.00 2.90
1124 1127 4.982295 GGCAAAAACAAAGGCACTACTTAG 59.018 41.667 0.00 0.00 38.49 2.18
1125 1128 4.402793 TGGCAAAAACAAAGGCACTACTTA 59.597 37.500 0.00 0.00 38.49 2.24
1126 1129 3.196685 TGGCAAAAACAAAGGCACTACTT 59.803 39.130 0.00 0.00 38.49 2.24
1127 1130 2.763448 TGGCAAAAACAAAGGCACTACT 59.237 40.909 0.00 0.00 38.49 2.57
1128 1131 3.172229 TGGCAAAAACAAAGGCACTAC 57.828 42.857 0.00 0.00 38.49 2.73
1129 1132 3.196685 ACTTGGCAAAAACAAAGGCACTA 59.803 39.130 0.00 0.00 38.49 2.74
1142 1145 5.360714 AGAAGAACTGAATCAACTTGGCAAA 59.639 36.000 0.00 0.00 0.00 3.68
1147 1150 7.164826 CACGAAAAGAAGAACTGAATCAACTTG 59.835 37.037 0.00 0.00 0.00 3.16
1156 1161 5.013568 TGGTACACGAAAAGAAGAACTGA 57.986 39.130 0.00 0.00 0.00 3.41
1266 1271 3.872603 ACAGTGGTTGGCAGCCGA 61.873 61.111 15.95 0.62 0.00 5.54
1318 1323 0.668096 TGCGTAACGTACCTTGCAGG 60.668 55.000 0.00 1.16 42.49 4.85
1340 1345 9.131791 ACTAAAATCAAATACCACAGAAGTTGT 57.868 29.630 0.00 0.00 41.94 3.32
1350 1355 9.802039 AGAAACTACCACTAAAATCAAATACCA 57.198 29.630 0.00 0.00 0.00 3.25
1368 1378 5.569823 CGAGCTCTACAACTTCAGAAACTAC 59.430 44.000 12.85 0.00 0.00 2.73
1371 1381 3.122111 GCGAGCTCTACAACTTCAGAAAC 59.878 47.826 12.85 0.00 0.00 2.78
1506 1516 2.283173 GGCAACCCCTTCCCACTG 60.283 66.667 0.00 0.00 0.00 3.66
1547 1557 3.843240 CGTTCGAAGCTGCTCCGC 61.843 66.667 2.48 0.00 0.00 5.54
1680 1690 4.020396 AGCTCTCTGCATTTCTTCTTCAGA 60.020 41.667 0.00 0.00 45.94 3.27
1691 1701 2.652590 GAATCCCAAGCTCTCTGCATT 58.347 47.619 0.00 0.00 45.94 3.56
1692 1702 1.133853 GGAATCCCAAGCTCTCTGCAT 60.134 52.381 0.00 0.00 45.94 3.96
1739 1749 1.609061 CGTTGATGAGGGTCTGCAAGT 60.609 52.381 0.00 0.00 33.76 3.16
1779 1789 8.466617 TCAGAGATAGGAAAACTAGTATGGAC 57.533 38.462 0.00 0.00 34.56 4.02
1805 1816 2.803030 AAGTGCTGGCAGATTCAGAT 57.197 45.000 20.86 0.00 34.36 2.90
1822 1833 5.236478 ACACAGAGAAACAACGGATGTAAAG 59.764 40.000 0.00 0.00 42.99 1.85
1842 1853 2.672874 GACATCGCAGAGCATTTACACA 59.327 45.455 0.00 0.00 43.63 3.72
1843 1854 2.285256 CGACATCGCAGAGCATTTACAC 60.285 50.000 0.00 0.00 43.63 2.90
1912 1923 4.172512 CCATCGCCCTCAGCTGCT 62.173 66.667 9.47 0.00 40.39 4.24
2053 2064 1.065410 TGCCTCCCCAGGTTCAAGAA 61.065 55.000 0.00 0.00 42.74 2.52
2168 2216 8.791327 TCTGCTATCATAATTTGTGTTCTTCA 57.209 30.769 0.00 0.00 0.00 3.02
2188 2236 3.507622 GTGTTTAGCCCAATTCTTCTGCT 59.492 43.478 0.00 0.00 36.11 4.24
2201 2249 2.423538 CCATACAAGCAGGTGTTTAGCC 59.576 50.000 0.00 0.00 32.75 3.93
2235 2283 7.175816 ACATCACATGCCTGATAGTACTACTAG 59.824 40.741 4.31 6.51 33.66 2.57
2238 2286 5.923114 CACATCACATGCCTGATAGTACTAC 59.077 44.000 4.31 0.35 29.28 2.73
2243 2291 3.181457 CCTCACATCACATGCCTGATAGT 60.181 47.826 0.00 0.00 29.28 2.12
2250 2298 1.660560 GGTGCCTCACATCACATGCC 61.661 60.000 0.00 0.00 35.86 4.40
2306 3062 5.104235 TAGTGCAGACTGTGGTAGGATACTA 60.104 44.000 3.99 0.00 40.11 1.82
2307 3063 4.325109 TAGTGCAGACTGTGGTAGGATACT 60.325 45.833 3.99 0.00 41.73 2.12
2308 3064 2.761208 AGTGCAGACTGTGGTAGGATAC 59.239 50.000 3.99 0.00 42.04 2.24
2313 3069 2.296190 TGTGTAGTGCAGACTGTGGTAG 59.704 50.000 3.99 0.00 33.21 3.18
2315 3071 1.119684 TGTGTAGTGCAGACTGTGGT 58.880 50.000 3.99 0.00 33.21 4.16
2384 3141 1.896694 CAGAGAGCAGAGGGACACC 59.103 63.158 0.00 0.00 0.00 4.16
2428 3185 2.892425 GCGATGAGTTCAGGGCGG 60.892 66.667 0.00 0.00 0.00 6.13
2545 3302 1.918293 AGGACGGTGAAGGCCATCA 60.918 57.895 6.57 6.57 43.43 3.07
2576 3333 2.103143 ATGTCGGAGAAGCTCGCG 59.897 61.111 0.00 0.00 39.69 5.87
2596 3353 2.825836 GGATGCTGGCCAGGAACG 60.826 66.667 31.97 7.96 30.94 3.95
2852 3609 2.663196 CTGACGTGGTTCCTCCCC 59.337 66.667 0.00 0.00 34.77 4.81
2855 3612 2.047179 GGCCTGACGTGGTTCCTC 60.047 66.667 0.00 0.00 0.00 3.71
2987 3744 1.885887 CATCATCCCTCTCCTCGTCTC 59.114 57.143 0.00 0.00 0.00 3.36
2989 3746 1.339610 CACATCATCCCTCTCCTCGTC 59.660 57.143 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.