Multiple sequence alignment - TraesCS7D01G188600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G188600 chr7D 100.000 1698 0 0 1664 3361 140846346 140848043 0.000000e+00 3136.0
1 TraesCS7D01G188600 chr7D 100.000 1388 0 0 1 1388 140844683 140846070 0.000000e+00 2564.0
2 TraesCS7D01G188600 chr7D 98.482 1054 14 1 2310 3361 140856968 140858021 0.000000e+00 1857.0
3 TraesCS7D01G188600 chr7D 94.877 1054 45 5 2310 3361 91234490 91233444 0.000000e+00 1639.0
4 TraesCS7D01G188600 chr7D 94.787 1055 40 9 2310 3361 530227285 530226243 0.000000e+00 1629.0
5 TraesCS7D01G188600 chr7D 80.405 592 103 10 1724 2310 138508824 138508241 3.980000e-119 438.0
6 TraesCS7D01G188600 chr7D 73.594 409 108 0 1757 2165 12734283 12733875 1.250000e-34 158.0
7 TraesCS7D01G188600 chr2D 95.256 1054 40 5 2310 3361 425678191 425679236 0.000000e+00 1661.0
8 TraesCS7D01G188600 chr5D 95.062 1053 43 6 2311 3361 460876056 460877101 0.000000e+00 1648.0
9 TraesCS7D01G188600 chr5D 94.867 1052 40 10 2311 3361 163022345 163023383 0.000000e+00 1631.0
10 TraesCS7D01G188600 chr4D 94.797 1057 43 8 2309 3361 136251591 136252639 0.000000e+00 1637.0
11 TraesCS7D01G188600 chr4D 94.782 1054 45 6 2310 3361 136263616 136264661 0.000000e+00 1633.0
12 TraesCS7D01G188600 chr6D 94.607 1057 47 6 2307 3361 100216611 100217659 0.000000e+00 1628.0
13 TraesCS7D01G188600 chr7B 94.397 589 31 2 1723 2310 106128614 106129201 0.000000e+00 904.0
14 TraesCS7D01G188600 chr7B 90.942 552 35 7 287 838 106127729 106128265 0.000000e+00 728.0
15 TraesCS7D01G188600 chr7B 92.442 344 20 4 870 1207 106128247 106128590 1.400000e-133 486.0
16 TraesCS7D01G188600 chr7B 80.203 591 94 18 1724 2304 104005414 104004837 4.010000e-114 422.0
17 TraesCS7D01G188600 chr7A 88.396 767 62 17 547 1294 143079116 143079874 0.000000e+00 898.0
18 TraesCS7D01G188600 chr7A 93.027 588 41 0 1723 2310 143079865 143080452 0.000000e+00 859.0
19 TraesCS7D01G188600 chr7A 79.492 590 112 7 1724 2310 138742052 138741469 8.680000e-111 411.0
20 TraesCS7D01G188600 chr7A 73.775 408 107 0 1757 2164 12309907 12309500 9.650000e-36 161.0
21 TraesCS7D01G188600 chrUn 94.792 96 5 0 1293 1388 171661239 171661144 2.090000e-32 150.0
22 TraesCS7D01G188600 chrUn 98.039 51 1 0 1672 1722 171659063 171659013 4.620000e-14 89.8
23 TraesCS7D01G188600 chrUn 98.039 51 1 0 1672 1722 171661103 171661053 4.620000e-14 89.8
24 TraesCS7D01G188600 chr4A 73.284 408 109 0 1757 2164 724854985 724855392 2.090000e-32 150.0
25 TraesCS7D01G188600 chr3D 81.159 138 24 2 1019 1155 152053885 152053749 3.550000e-20 110.0
26 TraesCS7D01G188600 chr1A 96.610 59 2 0 1664 1722 510279074 510279016 7.670000e-17 99.0
27 TraesCS7D01G188600 chr5A 100.000 28 0 0 1297 1324 547167206 547167179 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G188600 chr7D 140844683 140848043 3360 False 2850.0 3136 100.000000 1 3361 2 chr7D.!!$F2 3360
1 TraesCS7D01G188600 chr7D 140856968 140858021 1053 False 1857.0 1857 98.482000 2310 3361 1 chr7D.!!$F1 1051
2 TraesCS7D01G188600 chr7D 91233444 91234490 1046 True 1639.0 1639 94.877000 2310 3361 1 chr7D.!!$R2 1051
3 TraesCS7D01G188600 chr7D 530226243 530227285 1042 True 1629.0 1629 94.787000 2310 3361 1 chr7D.!!$R4 1051
4 TraesCS7D01G188600 chr7D 138508241 138508824 583 True 438.0 438 80.405000 1724 2310 1 chr7D.!!$R3 586
5 TraesCS7D01G188600 chr2D 425678191 425679236 1045 False 1661.0 1661 95.256000 2310 3361 1 chr2D.!!$F1 1051
6 TraesCS7D01G188600 chr5D 460876056 460877101 1045 False 1648.0 1648 95.062000 2311 3361 1 chr5D.!!$F2 1050
7 TraesCS7D01G188600 chr5D 163022345 163023383 1038 False 1631.0 1631 94.867000 2311 3361 1 chr5D.!!$F1 1050
8 TraesCS7D01G188600 chr4D 136251591 136252639 1048 False 1637.0 1637 94.797000 2309 3361 1 chr4D.!!$F1 1052
9 TraesCS7D01G188600 chr4D 136263616 136264661 1045 False 1633.0 1633 94.782000 2310 3361 1 chr4D.!!$F2 1051
10 TraesCS7D01G188600 chr6D 100216611 100217659 1048 False 1628.0 1628 94.607000 2307 3361 1 chr6D.!!$F1 1054
11 TraesCS7D01G188600 chr7B 106127729 106129201 1472 False 706.0 904 92.593667 287 2310 3 chr7B.!!$F1 2023
12 TraesCS7D01G188600 chr7B 104004837 104005414 577 True 422.0 422 80.203000 1724 2304 1 chr7B.!!$R1 580
13 TraesCS7D01G188600 chr7A 143079116 143080452 1336 False 878.5 898 90.711500 547 2310 2 chr7A.!!$F1 1763
14 TraesCS7D01G188600 chr7A 138741469 138742052 583 True 411.0 411 79.492000 1724 2310 1 chr7A.!!$R2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.035439 GGCTTCCCAGTCGGATTGAA 60.035 55.0 1.62 0.0 41.63 2.69 F
361 362 0.037882 GCAGCTTTTCTTTCAGGGGC 60.038 55.0 0.00 0.0 0.00 5.80 F
1335 1360 0.107557 AATTACGGGCTGGTTACGGG 60.108 55.0 0.00 0.0 0.00 5.28 F
1718 1743 0.034337 AGTCCGTGCGTGTACCATTT 59.966 50.0 0.00 0.0 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1709 0.035820 GGACTGATTACGGGGTTGCA 60.036 55.000 0.0 0.0 0.0 4.08 R
1686 1711 0.248289 ACGGACTGATTACGGGGTTG 59.752 55.000 0.0 0.0 0.0 3.77 R
2148 2173 2.498644 TGTCCAACAGAAACCACACA 57.501 45.000 0.0 0.0 0.0 3.72 R
2810 2842 4.202749 TGAGGGTTCAAAGTACTAGGGAGA 60.203 45.833 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.997482 TTTCGATAAGTAATTGTTTCATTAGGC 57.003 29.630 0.00 0.00 0.00 3.93
27 28 8.149973 TCGATAAGTAATTGTTTCATTAGGCC 57.850 34.615 0.00 0.00 0.00 5.19
28 29 7.227910 TCGATAAGTAATTGTTTCATTAGGCCC 59.772 37.037 0.00 0.00 0.00 5.80
29 30 7.228706 CGATAAGTAATTGTTTCATTAGGCCCT 59.771 37.037 0.00 0.00 0.00 5.19
30 31 9.569122 GATAAGTAATTGTTTCATTAGGCCCTA 57.431 33.333 0.00 0.00 0.00 3.53
32 33 8.838649 AAGTAATTGTTTCATTAGGCCCTATT 57.161 30.769 0.00 0.00 0.00 1.73
33 34 8.465273 AGTAATTGTTTCATTAGGCCCTATTC 57.535 34.615 0.00 0.00 0.00 1.75
34 35 8.282256 AGTAATTGTTTCATTAGGCCCTATTCT 58.718 33.333 0.00 0.00 0.00 2.40
35 36 6.966534 ATTGTTTCATTAGGCCCTATTCTG 57.033 37.500 0.00 0.00 0.00 3.02
36 37 5.450818 TGTTTCATTAGGCCCTATTCTGT 57.549 39.130 0.00 0.00 0.00 3.41
37 38 5.826643 TGTTTCATTAGGCCCTATTCTGTT 58.173 37.500 0.00 0.00 0.00 3.16
38 39 6.964464 TGTTTCATTAGGCCCTATTCTGTTA 58.036 36.000 0.00 0.00 0.00 2.41
39 40 6.826741 TGTTTCATTAGGCCCTATTCTGTTAC 59.173 38.462 0.00 0.00 0.00 2.50
40 41 6.569127 TTCATTAGGCCCTATTCTGTTACA 57.431 37.500 0.00 0.00 0.00 2.41
41 42 5.925509 TCATTAGGCCCTATTCTGTTACAC 58.074 41.667 0.00 0.00 0.00 2.90
42 43 5.427157 TCATTAGGCCCTATTCTGTTACACA 59.573 40.000 0.00 0.00 0.00 3.72
44 45 2.505819 AGGCCCTATTCTGTTACACAGG 59.494 50.000 0.00 0.00 45.94 4.00
45 46 2.421529 GGCCCTATTCTGTTACACAGGG 60.422 54.545 10.53 10.53 45.94 4.45
46 47 2.504175 GCCCTATTCTGTTACACAGGGA 59.496 50.000 16.29 0.00 45.94 4.20
47 48 3.136626 GCCCTATTCTGTTACACAGGGAT 59.863 47.826 16.29 7.43 45.94 3.85
48 49 4.743955 GCCCTATTCTGTTACACAGGGATC 60.744 50.000 16.29 0.00 45.94 3.36
49 50 4.501571 CCCTATTCTGTTACACAGGGATCG 60.502 50.000 9.69 0.00 45.94 3.69
50 51 4.341235 CCTATTCTGTTACACAGGGATCGA 59.659 45.833 4.09 0.00 45.94 3.59
51 52 5.011125 CCTATTCTGTTACACAGGGATCGAT 59.989 44.000 0.00 0.00 45.94 3.59
52 53 4.386867 TTCTGTTACACAGGGATCGATC 57.613 45.455 17.36 17.36 45.94 3.69
53 54 2.357952 TCTGTTACACAGGGATCGATCG 59.642 50.000 18.81 9.36 45.94 3.69
54 55 1.407618 TGTTACACAGGGATCGATCGG 59.592 52.381 18.81 13.01 0.00 4.18
55 56 1.037493 TTACACAGGGATCGATCGGG 58.963 55.000 18.81 12.67 0.00 5.14
56 57 0.826256 TACACAGGGATCGATCGGGG 60.826 60.000 18.81 13.98 0.00 5.73
57 58 1.832608 CACAGGGATCGATCGGGGA 60.833 63.158 18.81 0.00 0.00 4.81
58 59 1.156330 ACAGGGATCGATCGGGGAT 59.844 57.895 18.81 0.62 0.00 3.85
59 60 1.188219 ACAGGGATCGATCGGGGATG 61.188 60.000 18.81 13.92 0.00 3.51
60 61 1.156330 AGGGATCGATCGGGGATGT 59.844 57.895 18.81 0.00 0.00 3.06
61 62 0.408309 AGGGATCGATCGGGGATGTA 59.592 55.000 18.81 0.00 0.00 2.29
62 63 1.007238 AGGGATCGATCGGGGATGTAT 59.993 52.381 18.81 0.00 0.00 2.29
63 64 1.137086 GGGATCGATCGGGGATGTATG 59.863 57.143 18.81 0.00 0.00 2.39
64 65 1.137086 GGATCGATCGGGGATGTATGG 59.863 57.143 18.81 0.00 0.00 2.74
65 66 1.137086 GATCGATCGGGGATGTATGGG 59.863 57.143 16.41 0.00 0.00 4.00
66 67 0.113580 TCGATCGGGGATGTATGGGA 59.886 55.000 16.41 0.00 0.00 4.37
67 68 0.532573 CGATCGGGGATGTATGGGAG 59.467 60.000 7.38 0.00 0.00 4.30
68 69 1.891011 CGATCGGGGATGTATGGGAGA 60.891 57.143 7.38 0.00 0.00 3.71
69 70 1.550976 GATCGGGGATGTATGGGAGAC 59.449 57.143 0.00 0.00 0.00 3.36
70 71 0.826256 TCGGGGATGTATGGGAGACG 60.826 60.000 0.00 0.00 0.00 4.18
71 72 1.371558 GGGGATGTATGGGAGACGC 59.628 63.158 0.00 0.00 0.00 5.19
72 73 1.371558 GGGATGTATGGGAGACGCC 59.628 63.158 0.00 0.00 0.00 5.68
73 74 1.407656 GGGATGTATGGGAGACGCCA 61.408 60.000 0.00 0.00 38.95 5.69
74 75 0.687354 GGATGTATGGGAGACGCCAT 59.313 55.000 0.00 0.00 38.95 4.40
75 76 1.072331 GGATGTATGGGAGACGCCATT 59.928 52.381 0.00 0.00 38.95 3.16
76 77 2.417719 GATGTATGGGAGACGCCATTC 58.582 52.381 0.00 0.00 38.95 2.67
77 78 0.468226 TGTATGGGAGACGCCATTCC 59.532 55.000 0.00 0.00 38.95 3.01
78 79 0.468226 GTATGGGAGACGCCATTCCA 59.532 55.000 0.00 0.00 38.95 3.53
79 80 0.468226 TATGGGAGACGCCATTCCAC 59.532 55.000 0.00 0.00 38.95 4.02
80 81 1.274703 ATGGGAGACGCCATTCCACT 61.275 55.000 0.00 0.00 38.95 4.00
81 82 1.450312 GGGAGACGCCATTCCACTG 60.450 63.158 0.00 0.00 38.95 3.66
82 83 1.450312 GGAGACGCCATTCCACTGG 60.450 63.158 0.00 0.00 39.45 4.00
83 84 1.596934 GAGACGCCATTCCACTGGA 59.403 57.895 0.00 0.00 38.69 3.86
84 85 0.460987 GAGACGCCATTCCACTGGAG 60.461 60.000 0.00 0.00 41.40 3.86
85 86 3.483587 ACGCCATTCCACTGGAGT 58.516 55.556 0.00 0.00 43.47 3.85
86 87 1.003355 ACGCCATTCCACTGGAGTG 60.003 57.895 12.65 12.65 46.02 3.51
87 88 2.401766 CGCCATTCCACTGGAGTGC 61.402 63.158 13.91 9.52 44.34 4.40
88 89 2.401766 GCCATTCCACTGGAGTGCG 61.402 63.158 13.91 9.11 44.34 5.34
89 90 1.746615 CCATTCCACTGGAGTGCGG 60.747 63.158 13.91 3.08 44.34 5.69
90 91 2.045926 ATTCCACTGGAGTGCGGC 60.046 61.111 0.91 0.00 44.34 6.53
91 92 3.958147 ATTCCACTGGAGTGCGGCG 62.958 63.158 0.51 0.51 44.34 6.46
94 95 4.662961 CACTGGAGTGCGGCGTGA 62.663 66.667 9.37 0.00 39.39 4.35
95 96 4.664677 ACTGGAGTGCGGCGTGAC 62.665 66.667 9.37 5.88 0.00 3.67
98 99 3.755628 GGAGTGCGGCGTGACCTA 61.756 66.667 9.37 0.00 35.61 3.08
99 100 2.202623 GAGTGCGGCGTGACCTAG 60.203 66.667 9.37 0.00 35.61 3.02
100 101 3.701604 GAGTGCGGCGTGACCTAGG 62.702 68.421 7.41 7.41 35.61 3.02
101 102 3.755628 GTGCGGCGTGACCTAGGA 61.756 66.667 17.98 0.00 35.61 2.94
102 103 2.992689 TGCGGCGTGACCTAGGAA 60.993 61.111 17.98 0.00 35.61 3.36
103 104 2.355986 TGCGGCGTGACCTAGGAAT 61.356 57.895 17.98 0.00 35.61 3.01
104 105 1.153429 GCGGCGTGACCTAGGAATT 60.153 57.895 17.98 0.00 35.61 2.17
105 106 1.152383 GCGGCGTGACCTAGGAATTC 61.152 60.000 17.98 2.94 35.61 2.17
106 107 0.529992 CGGCGTGACCTAGGAATTCC 60.530 60.000 17.98 17.31 35.61 3.01
107 108 0.529992 GGCGTGACCTAGGAATTCCG 60.530 60.000 17.98 10.83 36.86 4.30
108 109 0.458669 GCGTGACCTAGGAATTCCGA 59.541 55.000 17.98 13.00 42.08 4.55
109 110 1.536284 GCGTGACCTAGGAATTCCGAG 60.536 57.143 23.70 23.70 42.08 4.63
110 111 1.749634 CGTGACCTAGGAATTCCGAGT 59.250 52.381 26.93 20.87 42.08 4.18
111 112 2.165845 CGTGACCTAGGAATTCCGAGTT 59.834 50.000 26.93 17.44 42.08 3.01
112 113 3.368116 CGTGACCTAGGAATTCCGAGTTT 60.368 47.826 26.93 16.73 42.08 2.66
113 114 3.933332 GTGACCTAGGAATTCCGAGTTTG 59.067 47.826 26.93 17.15 42.08 2.93
114 115 3.581332 TGACCTAGGAATTCCGAGTTTGT 59.419 43.478 26.93 19.67 42.08 2.83
115 116 4.041198 TGACCTAGGAATTCCGAGTTTGTT 59.959 41.667 26.93 8.53 42.08 2.83
116 117 4.981812 ACCTAGGAATTCCGAGTTTGTTT 58.018 39.130 26.93 7.88 42.08 2.83
117 118 5.001874 ACCTAGGAATTCCGAGTTTGTTTC 58.998 41.667 26.93 0.00 42.08 2.78
118 119 4.395231 CCTAGGAATTCCGAGTTTGTTTCC 59.605 45.833 26.93 0.00 42.08 3.13
119 120 4.100279 AGGAATTCCGAGTTTGTTTCCT 57.900 40.909 18.82 0.00 42.08 3.36
120 121 4.072839 AGGAATTCCGAGTTTGTTTCCTC 58.927 43.478 18.82 0.00 38.85 3.71
121 122 4.072839 GGAATTCCGAGTTTGTTTCCTCT 58.927 43.478 9.17 0.00 31.90 3.69
122 123 4.519350 GGAATTCCGAGTTTGTTTCCTCTT 59.481 41.667 9.17 0.00 31.90 2.85
123 124 5.334957 GGAATTCCGAGTTTGTTTCCTCTTC 60.335 44.000 9.17 0.00 31.90 2.87
124 125 3.121738 TCCGAGTTTGTTTCCTCTTCC 57.878 47.619 0.00 0.00 0.00 3.46
125 126 2.704065 TCCGAGTTTGTTTCCTCTTCCT 59.296 45.455 0.00 0.00 0.00 3.36
126 127 3.135895 TCCGAGTTTGTTTCCTCTTCCTT 59.864 43.478 0.00 0.00 0.00 3.36
127 128 3.883489 CCGAGTTTGTTTCCTCTTCCTTT 59.117 43.478 0.00 0.00 0.00 3.11
128 129 4.338400 CCGAGTTTGTTTCCTCTTCCTTTT 59.662 41.667 0.00 0.00 0.00 2.27
129 130 5.163550 CCGAGTTTGTTTCCTCTTCCTTTTT 60.164 40.000 0.00 0.00 0.00 1.94
147 148 3.878160 TTTTTGGCAGTTCGAGGTTTT 57.122 38.095 0.00 0.00 0.00 2.43
148 149 3.878160 TTTTGGCAGTTCGAGGTTTTT 57.122 38.095 0.00 0.00 0.00 1.94
168 169 1.917872 TTTTGAATTGCCTAGCCCGT 58.082 45.000 0.00 0.00 0.00 5.28
169 170 2.791347 TTTGAATTGCCTAGCCCGTA 57.209 45.000 0.00 0.00 0.00 4.02
170 171 2.325583 TTGAATTGCCTAGCCCGTAG 57.674 50.000 0.00 0.00 0.00 3.51
183 184 4.333417 CGTAGGACCCCGACTTCT 57.667 61.111 0.00 0.00 0.00 2.85
184 185 2.576298 CGTAGGACCCCGACTTCTT 58.424 57.895 0.00 0.00 0.00 2.52
185 186 0.893447 CGTAGGACCCCGACTTCTTT 59.107 55.000 0.00 0.00 0.00 2.52
186 187 2.094675 CGTAGGACCCCGACTTCTTTA 58.905 52.381 0.00 0.00 0.00 1.85
187 188 2.159324 CGTAGGACCCCGACTTCTTTAC 60.159 54.545 0.00 0.00 0.00 2.01
188 189 0.893447 AGGACCCCGACTTCTTTACG 59.107 55.000 0.00 0.00 0.00 3.18
189 190 0.738762 GGACCCCGACTTCTTTACGC 60.739 60.000 0.00 0.00 0.00 4.42
190 191 1.074872 GACCCCGACTTCTTTACGCG 61.075 60.000 3.53 3.53 0.00 6.01
191 192 2.450345 CCCCGACTTCTTTACGCGC 61.450 63.158 5.73 0.00 0.00 6.86
192 193 1.445582 CCCGACTTCTTTACGCGCT 60.446 57.895 5.73 0.00 0.00 5.92
193 194 1.411493 CCCGACTTCTTTACGCGCTC 61.411 60.000 5.73 0.00 0.00 5.03
194 195 1.619207 CGACTTCTTTACGCGCTCG 59.381 57.895 5.73 0.00 42.43 5.03
195 196 1.730593 CGACTTCTTTACGCGCTCGG 61.731 60.000 5.73 0.00 40.69 4.63
196 197 2.010740 GACTTCTTTACGCGCTCGGC 62.011 60.000 5.73 0.00 40.69 5.54
197 198 1.805945 CTTCTTTACGCGCTCGGCT 60.806 57.895 5.73 0.00 40.44 5.52
198 199 1.352156 CTTCTTTACGCGCTCGGCTT 61.352 55.000 5.73 0.00 40.44 4.35
199 200 1.349259 TTCTTTACGCGCTCGGCTTC 61.349 55.000 5.73 0.00 40.44 3.86
200 201 2.799540 CTTTACGCGCTCGGCTTCC 61.800 63.158 5.73 0.00 40.44 3.46
201 202 4.807039 TTACGCGCTCGGCTTCCC 62.807 66.667 5.73 0.00 40.44 3.97
210 211 2.584608 CGGCTTCCCAGTCGGATT 59.415 61.111 0.00 0.00 44.89 3.01
211 212 1.815421 CGGCTTCCCAGTCGGATTG 60.815 63.158 0.00 0.00 44.89 2.67
212 213 1.602237 GGCTTCCCAGTCGGATTGA 59.398 57.895 1.62 0.00 41.63 2.57
213 214 0.035439 GGCTTCCCAGTCGGATTGAA 60.035 55.000 1.62 0.00 41.63 2.69
214 215 1.613255 GGCTTCCCAGTCGGATTGAAA 60.613 52.381 1.62 0.00 41.63 2.69
215 216 2.159382 GCTTCCCAGTCGGATTGAAAA 58.841 47.619 1.62 0.00 41.63 2.29
216 217 2.095212 GCTTCCCAGTCGGATTGAAAAC 60.095 50.000 1.62 0.00 41.63 2.43
217 218 1.803334 TCCCAGTCGGATTGAAAACG 58.197 50.000 1.62 0.00 34.86 3.60
218 219 1.345089 TCCCAGTCGGATTGAAAACGA 59.655 47.619 1.62 0.00 34.86 3.85
219 220 2.147958 CCCAGTCGGATTGAAAACGAA 58.852 47.619 1.62 0.00 38.46 3.85
220 221 2.159627 CCCAGTCGGATTGAAAACGAAG 59.840 50.000 1.62 0.00 38.46 3.79
221 222 2.412847 CCAGTCGGATTGAAAACGAAGC 60.413 50.000 1.62 0.00 38.46 3.86
222 223 1.804748 AGTCGGATTGAAAACGAAGCC 59.195 47.619 0.00 0.00 38.46 4.35
223 224 1.135774 GTCGGATTGAAAACGAAGCCC 60.136 52.381 0.00 0.00 38.46 5.19
224 225 0.878416 CGGATTGAAAACGAAGCCCA 59.122 50.000 0.00 0.00 0.00 5.36
225 226 1.135689 CGGATTGAAAACGAAGCCCAG 60.136 52.381 0.00 0.00 0.00 4.45
226 227 2.159382 GGATTGAAAACGAAGCCCAGA 58.841 47.619 0.00 0.00 0.00 3.86
227 228 2.556622 GGATTGAAAACGAAGCCCAGAA 59.443 45.455 0.00 0.00 0.00 3.02
228 229 3.366374 GGATTGAAAACGAAGCCCAGAAG 60.366 47.826 0.00 0.00 0.00 2.85
229 230 0.951558 TGAAAACGAAGCCCAGAAGC 59.048 50.000 0.00 0.00 0.00 3.86
230 231 0.110192 GAAAACGAAGCCCAGAAGCG 60.110 55.000 0.00 0.00 38.01 4.68
231 232 1.515521 AAAACGAAGCCCAGAAGCGG 61.516 55.000 0.00 0.00 38.01 5.52
239 240 4.489771 CCAGAAGCGGCCCCGAAT 62.490 66.667 11.48 0.00 42.83 3.34
240 241 2.438434 CAGAAGCGGCCCCGAATT 60.438 61.111 11.48 4.11 42.83 2.17
241 242 2.046285 CAGAAGCGGCCCCGAATTT 61.046 57.895 11.48 1.21 42.83 1.82
242 243 1.304134 AGAAGCGGCCCCGAATTTT 60.304 52.632 11.48 0.00 42.83 1.82
243 244 1.138883 GAAGCGGCCCCGAATTTTC 59.861 57.895 11.48 4.71 42.83 2.29
244 245 1.304134 AAGCGGCCCCGAATTTTCT 60.304 52.632 11.48 0.00 42.83 2.52
245 246 1.595093 AAGCGGCCCCGAATTTTCTG 61.595 55.000 11.48 0.00 42.83 3.02
246 247 2.489751 CGGCCCCGAATTTTCTGC 59.510 61.111 0.00 0.00 42.83 4.26
247 248 2.892640 GGCCCCGAATTTTCTGCC 59.107 61.111 0.00 0.00 0.00 4.85
248 249 2.489751 GCCCCGAATTTTCTGCCG 59.510 61.111 0.00 0.00 0.00 5.69
249 250 2.340328 GCCCCGAATTTTCTGCCGT 61.340 57.895 0.00 0.00 0.00 5.68
250 251 1.873270 GCCCCGAATTTTCTGCCGTT 61.873 55.000 0.00 0.00 0.00 4.44
251 252 1.455248 CCCCGAATTTTCTGCCGTTA 58.545 50.000 0.00 0.00 0.00 3.18
252 253 2.021457 CCCCGAATTTTCTGCCGTTAT 58.979 47.619 0.00 0.00 0.00 1.89
253 254 3.207778 CCCCGAATTTTCTGCCGTTATA 58.792 45.455 0.00 0.00 0.00 0.98
254 255 3.818773 CCCCGAATTTTCTGCCGTTATAT 59.181 43.478 0.00 0.00 0.00 0.86
255 256 4.998672 CCCCGAATTTTCTGCCGTTATATA 59.001 41.667 0.00 0.00 0.00 0.86
256 257 5.470777 CCCCGAATTTTCTGCCGTTATATAA 59.529 40.000 0.00 0.00 0.00 0.98
257 258 6.016943 CCCCGAATTTTCTGCCGTTATATAAA 60.017 38.462 0.00 0.00 0.00 1.40
258 259 7.308951 CCCCGAATTTTCTGCCGTTATATAAAT 60.309 37.037 0.00 0.00 0.00 1.40
259 260 8.723311 CCCGAATTTTCTGCCGTTATATAAATA 58.277 33.333 0.00 0.00 0.00 1.40
260 261 9.537848 CCGAATTTTCTGCCGTTATATAAATAC 57.462 33.333 0.00 0.00 0.00 1.89
264 265 9.840427 ATTTTCTGCCGTTATATAAATACATGC 57.160 29.630 0.00 0.00 0.00 4.06
265 266 7.971183 TTCTGCCGTTATATAAATACATGCA 57.029 32.000 0.00 0.00 0.00 3.96
266 267 8.560355 TTCTGCCGTTATATAAATACATGCAT 57.440 30.769 0.00 0.00 0.00 3.96
267 268 7.973601 TCTGCCGTTATATAAATACATGCATG 58.026 34.615 25.09 25.09 0.00 4.06
268 269 6.550843 TGCCGTTATATAAATACATGCATGC 58.449 36.000 26.53 11.82 0.00 4.06
269 270 6.150140 TGCCGTTATATAAATACATGCATGCA 59.850 34.615 26.53 25.04 0.00 3.96
270 271 6.468956 GCCGTTATATAAATACATGCATGCAC 59.531 38.462 25.37 3.66 0.00 4.57
271 272 7.525759 CCGTTATATAAATACATGCATGCACA 58.474 34.615 25.37 11.91 0.00 4.57
272 273 7.693536 CCGTTATATAAATACATGCATGCACAG 59.306 37.037 25.37 20.82 0.00 3.66
273 274 7.216881 CGTTATATAAATACATGCATGCACAGC 59.783 37.037 25.37 6.04 0.00 4.40
274 275 2.197792 AAATACATGCATGCACAGCG 57.802 45.000 25.37 14.27 33.85 5.18
275 276 1.097232 AATACATGCATGCACAGCGT 58.903 45.000 25.37 19.24 33.85 5.07
276 277 0.659427 ATACATGCATGCACAGCGTC 59.341 50.000 25.37 0.00 33.85 5.19
277 278 0.673022 TACATGCATGCACAGCGTCA 60.673 50.000 25.37 0.00 33.85 4.35
278 279 1.226295 CATGCATGCACAGCGTCAG 60.226 57.895 25.37 1.78 33.85 3.51
279 280 1.376295 ATGCATGCACAGCGTCAGA 60.376 52.632 25.37 0.00 33.85 3.27
280 281 0.746923 ATGCATGCACAGCGTCAGAT 60.747 50.000 25.37 0.00 33.85 2.90
281 282 0.956902 TGCATGCACAGCGTCAGATT 60.957 50.000 18.46 0.00 33.85 2.40
282 283 1.009078 GCATGCACAGCGTCAGATTA 58.991 50.000 14.21 0.00 0.00 1.75
283 284 1.600957 GCATGCACAGCGTCAGATTAT 59.399 47.619 14.21 0.00 0.00 1.28
284 285 2.802247 GCATGCACAGCGTCAGATTATA 59.198 45.455 14.21 0.00 0.00 0.98
285 286 3.363378 GCATGCACAGCGTCAGATTATAC 60.363 47.826 14.21 0.00 0.00 1.47
323 324 1.955663 CGATCCGGCATGCGAATCA 60.956 57.895 12.44 0.00 0.00 2.57
326 327 0.392706 ATCCGGCATGCGAATCACTA 59.607 50.000 12.44 0.00 0.00 2.74
330 331 0.864455 GGCATGCGAATCACTAGCTC 59.136 55.000 12.44 0.00 0.00 4.09
334 335 0.179137 TGCGAATCACTAGCTCCGTG 60.179 55.000 9.22 9.22 0.00 4.94
343 344 1.067495 ACTAGCTCCGTGTCAAGAAGC 60.067 52.381 0.00 0.00 0.00 3.86
355 356 4.737279 GTGTCAAGAAGCAGCTTTTCTTTC 59.263 41.667 16.57 13.65 41.60 2.62
361 362 0.037882 GCAGCTTTTCTTTCAGGGGC 60.038 55.000 0.00 0.00 0.00 5.80
365 366 1.068588 GCTTTTCTTTCAGGGGCGTTT 59.931 47.619 0.00 0.00 0.00 3.60
368 369 2.060050 TTCTTTCAGGGGCGTTTCAA 57.940 45.000 0.00 0.00 0.00 2.69
369 370 1.604604 TCTTTCAGGGGCGTTTCAAG 58.395 50.000 0.00 0.00 0.00 3.02
379 383 1.129437 GGCGTTTCAAGAAGCAGCTAG 59.871 52.381 0.00 0.00 0.00 3.42
380 384 1.464854 GCGTTTCAAGAAGCAGCTAGC 60.465 52.381 6.62 6.62 46.19 3.42
400 404 3.490759 CTGCGTGTGACGATGCCC 61.491 66.667 0.00 0.00 46.05 5.36
404 408 3.118454 GTGTGACGATGCCCACGG 61.118 66.667 0.00 0.00 36.15 4.94
664 668 2.922503 TGGGCGCAGTGAGAGGAA 60.923 61.111 10.83 0.00 0.00 3.36
752 756 1.072648 CCCGTACCTTCCTTCAAACCA 59.927 52.381 0.00 0.00 0.00 3.67
753 757 2.423577 CCGTACCTTCCTTCAAACCAG 58.576 52.381 0.00 0.00 0.00 4.00
754 758 2.224450 CCGTACCTTCCTTCAAACCAGT 60.224 50.000 0.00 0.00 0.00 4.00
755 759 2.806244 CGTACCTTCCTTCAAACCAGTG 59.194 50.000 0.00 0.00 0.00 3.66
795 802 2.093869 CCTGCCTCCATTCCACAATTTG 60.094 50.000 0.00 0.00 0.00 2.32
861 870 8.618677 TCTATAGACACTACATTACGGAACAAG 58.381 37.037 0.00 0.00 0.00 3.16
863 872 4.525487 AGACACTACATTACGGAACAAGGA 59.475 41.667 0.00 0.00 0.00 3.36
877 886 8.361592 ACGGAACAAGGATAGTATATTTTTCG 57.638 34.615 0.00 0.00 0.00 3.46
878 887 8.199449 ACGGAACAAGGATAGTATATTTTTCGA 58.801 33.333 0.00 0.00 0.00 3.71
879 888 9.037737 CGGAACAAGGATAGTATATTTTTCGAA 57.962 33.333 0.00 0.00 0.00 3.71
931 943 4.216042 TGGTATTAATGGATCAATGCAGCG 59.784 41.667 0.00 0.00 0.00 5.18
964 976 2.096442 GCGTTACACGTACCCTGCC 61.096 63.158 0.00 0.00 44.73 4.85
971 983 1.046472 CACGTACCCTGCCCCTGATA 61.046 60.000 0.00 0.00 0.00 2.15
999 1015 3.242867 CCAAGGCCATGGAGACTCTATA 58.757 50.000 22.97 0.00 43.54 1.31
1030 1054 1.009829 GATCGCGGCAATCAAAGAGT 58.990 50.000 6.13 0.00 0.00 3.24
1071 1095 0.746204 TGTTTGGTCTCGTTGCTGCA 60.746 50.000 0.00 0.00 0.00 4.41
1128 1152 2.991190 TCACCGTTCGAGAAATAACTGC 59.009 45.455 0.00 0.00 0.00 4.40
1263 1288 3.188048 GCACTATATCCACTTGATGCAGC 59.812 47.826 0.00 0.00 34.76 5.25
1277 1302 5.039920 TGATGCAGCCTTACTATTGATGT 57.960 39.130 0.00 0.00 0.00 3.06
1297 1322 8.689251 TGATGTAATAGAGCATAATTACGAGC 57.311 34.615 0.00 0.00 40.08 5.03
1298 1323 8.523658 TGATGTAATAGAGCATAATTACGAGCT 58.476 33.333 8.22 8.22 40.08 4.09
1299 1324 9.360093 GATGTAATAGAGCATAATTACGAGCTT 57.640 33.333 9.47 4.43 40.08 3.74
1300 1325 9.712305 ATGTAATAGAGCATAATTACGAGCTTT 57.288 29.630 9.47 7.26 40.08 3.51
1301 1326 8.978539 TGTAATAGAGCATAATTACGAGCTTTG 58.021 33.333 9.47 0.00 40.08 2.77
1302 1327 4.802876 AGAGCATAATTACGAGCTTTGC 57.197 40.909 9.47 4.15 37.48 3.68
1303 1328 4.446371 AGAGCATAATTACGAGCTTTGCT 58.554 39.130 7.09 7.09 43.88 3.91
1304 1329 5.601662 AGAGCATAATTACGAGCTTTGCTA 58.398 37.500 7.31 0.00 39.88 3.49
1305 1330 5.463724 AGAGCATAATTACGAGCTTTGCTAC 59.536 40.000 7.31 3.27 39.88 3.58
1306 1331 5.116180 AGCATAATTACGAGCTTTGCTACA 58.884 37.500 5.83 0.00 39.88 2.74
1307 1332 5.760253 AGCATAATTACGAGCTTTGCTACAT 59.240 36.000 5.83 0.00 39.88 2.29
1308 1333 6.073548 AGCATAATTACGAGCTTTGCTACATC 60.074 38.462 5.83 0.00 39.88 3.06
1309 1334 6.292865 GCATAATTACGAGCTTTGCTACATCA 60.293 38.462 0.00 0.00 39.88 3.07
1310 1335 7.630026 CATAATTACGAGCTTTGCTACATCAA 58.370 34.615 0.00 0.00 39.88 2.57
1311 1336 4.921470 TTACGAGCTTTGCTACATCAAC 57.079 40.909 0.00 0.00 39.88 3.18
1312 1337 1.726791 ACGAGCTTTGCTACATCAACG 59.273 47.619 0.00 0.00 39.88 4.10
1313 1338 1.061131 CGAGCTTTGCTACATCAACGG 59.939 52.381 0.00 0.00 39.88 4.44
1314 1339 2.346803 GAGCTTTGCTACATCAACGGA 58.653 47.619 0.00 0.00 39.88 4.69
1315 1340 2.076863 AGCTTTGCTACATCAACGGAC 58.923 47.619 0.00 0.00 36.99 4.79
1316 1341 1.804151 GCTTTGCTACATCAACGGACA 59.196 47.619 0.00 0.00 0.00 4.02
1317 1342 2.225491 GCTTTGCTACATCAACGGACAA 59.775 45.455 0.00 0.00 0.00 3.18
1318 1343 3.119849 GCTTTGCTACATCAACGGACAAT 60.120 43.478 0.00 0.00 0.00 2.71
1319 1344 4.615912 GCTTTGCTACATCAACGGACAATT 60.616 41.667 0.00 0.00 0.00 2.32
1320 1345 5.391523 GCTTTGCTACATCAACGGACAATTA 60.392 40.000 0.00 0.00 0.00 1.40
1321 1346 5.539582 TTGCTACATCAACGGACAATTAC 57.460 39.130 0.00 0.00 0.00 1.89
1322 1347 3.615056 TGCTACATCAACGGACAATTACG 59.385 43.478 0.00 0.00 0.00 3.18
1323 1348 3.000925 GCTACATCAACGGACAATTACGG 59.999 47.826 0.00 0.00 0.00 4.02
1324 1349 2.352388 ACATCAACGGACAATTACGGG 58.648 47.619 0.00 0.00 0.00 5.28
1325 1350 1.063469 CATCAACGGACAATTACGGGC 59.937 52.381 0.00 0.00 0.00 6.13
1326 1351 0.322322 TCAACGGACAATTACGGGCT 59.678 50.000 0.00 0.00 0.00 5.19
1327 1352 0.446222 CAACGGACAATTACGGGCTG 59.554 55.000 0.00 0.00 0.00 4.85
1328 1353 0.675522 AACGGACAATTACGGGCTGG 60.676 55.000 0.00 0.00 0.00 4.85
1329 1354 1.078708 CGGACAATTACGGGCTGGT 60.079 57.895 0.00 0.00 0.00 4.00
1330 1355 0.675522 CGGACAATTACGGGCTGGTT 60.676 55.000 0.00 0.00 0.00 3.67
1331 1356 1.405797 CGGACAATTACGGGCTGGTTA 60.406 52.381 0.00 0.00 0.00 2.85
1332 1357 2.011947 GGACAATTACGGGCTGGTTAC 58.988 52.381 0.00 0.00 0.00 2.50
1333 1358 1.662122 GACAATTACGGGCTGGTTACG 59.338 52.381 0.00 0.00 0.00 3.18
1334 1359 1.011333 CAATTACGGGCTGGTTACGG 58.989 55.000 0.00 0.00 0.00 4.02
1335 1360 0.107557 AATTACGGGCTGGTTACGGG 60.108 55.000 0.00 0.00 0.00 5.28
1336 1361 1.974973 ATTACGGGCTGGTTACGGGG 61.975 60.000 0.00 0.00 0.00 5.73
1340 1365 4.832608 GGCTGGTTACGGGGCGAG 62.833 72.222 0.00 0.00 0.00 5.03
1341 1366 4.832608 GCTGGTTACGGGGCGAGG 62.833 72.222 0.00 0.00 0.00 4.63
1342 1367 3.387947 CTGGTTACGGGGCGAGGT 61.388 66.667 0.00 0.00 0.00 3.85
1343 1368 2.924101 TGGTTACGGGGCGAGGTT 60.924 61.111 0.00 0.00 0.00 3.50
1344 1369 2.435410 GGTTACGGGGCGAGGTTG 60.435 66.667 0.00 0.00 0.00 3.77
1345 1370 2.658422 GTTACGGGGCGAGGTTGA 59.342 61.111 0.00 0.00 0.00 3.18
1346 1371 1.447314 GTTACGGGGCGAGGTTGAG 60.447 63.158 0.00 0.00 0.00 3.02
1347 1372 1.909781 TTACGGGGCGAGGTTGAGT 60.910 57.895 0.00 0.00 0.00 3.41
1348 1373 1.474332 TTACGGGGCGAGGTTGAGTT 61.474 55.000 0.00 0.00 0.00 3.01
1349 1374 2.162338 TACGGGGCGAGGTTGAGTTG 62.162 60.000 0.00 0.00 0.00 3.16
1350 1375 2.430367 GGGGCGAGGTTGAGTTGT 59.570 61.111 0.00 0.00 0.00 3.32
1351 1376 1.671379 GGGGCGAGGTTGAGTTGTC 60.671 63.158 0.00 0.00 0.00 3.18
1352 1377 1.070786 GGGCGAGGTTGAGTTGTCA 59.929 57.895 0.00 0.00 0.00 3.58
1353 1378 0.534203 GGGCGAGGTTGAGTTGTCAA 60.534 55.000 0.00 0.00 40.55 3.18
1354 1379 1.305201 GGCGAGGTTGAGTTGTCAAA 58.695 50.000 0.00 0.00 44.44 2.69
1364 1389 5.977129 GGTTGAGTTGTCAAACTGTTATTGG 59.023 40.000 0.00 0.00 46.84 3.16
1365 1390 6.183360 GGTTGAGTTGTCAAACTGTTATTGGA 60.183 38.462 0.00 0.00 46.84 3.53
1366 1391 7.425606 GTTGAGTTGTCAAACTGTTATTGGAT 58.574 34.615 0.00 0.00 46.84 3.41
1367 1392 7.581213 TGAGTTGTCAAACTGTTATTGGATT 57.419 32.000 0.00 0.00 46.84 3.01
1368 1393 8.684386 TGAGTTGTCAAACTGTTATTGGATTA 57.316 30.769 0.00 0.00 46.84 1.75
1369 1394 9.126151 TGAGTTGTCAAACTGTTATTGGATTAA 57.874 29.630 0.00 0.00 46.84 1.40
1370 1395 9.959749 GAGTTGTCAAACTGTTATTGGATTAAA 57.040 29.630 0.00 0.00 46.84 1.52
1371 1396 9.965824 AGTTGTCAAACTGTTATTGGATTAAAG 57.034 29.630 0.00 0.00 45.12 1.85
1372 1397 9.959749 GTTGTCAAACTGTTATTGGATTAAAGA 57.040 29.630 0.00 0.00 33.22 2.52
1374 1399 8.792633 TGTCAAACTGTTATTGGATTAAAGAGG 58.207 33.333 0.00 0.00 0.00 3.69
1375 1400 8.244113 GTCAAACTGTTATTGGATTAAAGAGGG 58.756 37.037 0.00 0.00 0.00 4.30
1376 1401 8.167392 TCAAACTGTTATTGGATTAAAGAGGGA 58.833 33.333 0.00 0.00 0.00 4.20
1377 1402 8.462016 CAAACTGTTATTGGATTAAAGAGGGAG 58.538 37.037 0.00 0.00 0.00 4.30
1378 1403 6.663734 ACTGTTATTGGATTAAAGAGGGAGG 58.336 40.000 0.00 0.00 0.00 4.30
1379 1404 6.447084 ACTGTTATTGGATTAAAGAGGGAGGA 59.553 38.462 0.00 0.00 0.00 3.71
1380 1405 7.036863 ACTGTTATTGGATTAAAGAGGGAGGAA 60.037 37.037 0.00 0.00 0.00 3.36
1381 1406 7.346471 TGTTATTGGATTAAAGAGGGAGGAAG 58.654 38.462 0.00 0.00 0.00 3.46
1382 1407 4.862641 TTGGATTAAAGAGGGAGGAAGG 57.137 45.455 0.00 0.00 0.00 3.46
1383 1408 3.123273 TGGATTAAAGAGGGAGGAAGGG 58.877 50.000 0.00 0.00 0.00 3.95
1384 1409 2.158593 GGATTAAAGAGGGAGGAAGGGC 60.159 54.545 0.00 0.00 0.00 5.19
1385 1410 1.296002 TTAAAGAGGGAGGAAGGGCC 58.704 55.000 0.00 0.00 0.00 5.80
1386 1411 0.623617 TAAAGAGGGAGGAAGGGCCC 60.624 60.000 16.46 16.46 45.04 5.80
1387 1412 3.972328 AAGAGGGAGGAAGGGCCCC 62.972 68.421 21.43 3.11 45.89 5.80
1688 1713 2.114411 GGAAGGGGTCCGTTGCAA 59.886 61.111 0.00 0.00 36.40 4.08
1689 1714 2.265904 GGAAGGGGTCCGTTGCAAC 61.266 63.158 19.89 19.89 36.40 4.17
1690 1715 2.203437 AAGGGGTCCGTTGCAACC 60.203 61.111 23.42 10.46 34.64 3.77
1694 1719 4.941309 GGTCCGTTGCAACCCCGT 62.941 66.667 23.42 0.00 0.00 5.28
1695 1720 2.030862 GTCCGTTGCAACCCCGTA 59.969 61.111 23.42 2.16 0.00 4.02
1696 1721 1.597578 GTCCGTTGCAACCCCGTAA 60.598 57.895 23.42 0.52 0.00 3.18
1697 1722 0.956902 GTCCGTTGCAACCCCGTAAT 60.957 55.000 23.42 0.00 0.00 1.89
1698 1723 0.674269 TCCGTTGCAACCCCGTAATC 60.674 55.000 23.42 0.00 0.00 1.75
1699 1724 0.956410 CCGTTGCAACCCCGTAATCA 60.956 55.000 23.42 0.00 0.00 2.57
1700 1725 0.446222 CGTTGCAACCCCGTAATCAG 59.554 55.000 23.42 1.76 0.00 2.90
1701 1726 1.530323 GTTGCAACCCCGTAATCAGT 58.470 50.000 19.15 0.00 0.00 3.41
1702 1727 1.467342 GTTGCAACCCCGTAATCAGTC 59.533 52.381 19.15 0.00 0.00 3.51
1703 1728 0.035820 TGCAACCCCGTAATCAGTCC 60.036 55.000 0.00 0.00 0.00 3.85
1704 1729 1.087771 GCAACCCCGTAATCAGTCCG 61.088 60.000 0.00 0.00 0.00 4.79
1705 1730 0.248289 CAACCCCGTAATCAGTCCGT 59.752 55.000 0.00 0.00 0.00 4.69
1706 1731 0.248289 AACCCCGTAATCAGTCCGTG 59.752 55.000 0.00 0.00 0.00 4.94
1707 1732 1.520787 CCCCGTAATCAGTCCGTGC 60.521 63.158 0.00 0.00 0.00 5.34
1708 1733 1.876714 CCCGTAATCAGTCCGTGCG 60.877 63.158 0.00 0.00 0.00 5.34
1709 1734 1.153901 CCGTAATCAGTCCGTGCGT 60.154 57.895 0.00 0.00 0.00 5.24
1710 1735 1.410737 CCGTAATCAGTCCGTGCGTG 61.411 60.000 0.00 0.00 0.00 5.34
1711 1736 0.731514 CGTAATCAGTCCGTGCGTGT 60.732 55.000 0.00 0.00 0.00 4.49
1712 1737 1.466192 CGTAATCAGTCCGTGCGTGTA 60.466 52.381 0.00 0.00 0.00 2.90
1713 1738 1.916000 GTAATCAGTCCGTGCGTGTAC 59.084 52.381 0.00 0.00 0.00 2.90
1714 1739 0.389426 AATCAGTCCGTGCGTGTACC 60.389 55.000 0.00 0.00 0.00 3.34
1715 1740 1.529152 ATCAGTCCGTGCGTGTACCA 61.529 55.000 0.00 0.00 0.00 3.25
1716 1741 1.080093 CAGTCCGTGCGTGTACCAT 60.080 57.895 0.00 0.00 0.00 3.55
1717 1742 0.669318 CAGTCCGTGCGTGTACCATT 60.669 55.000 0.00 0.00 0.00 3.16
1718 1743 0.034337 AGTCCGTGCGTGTACCATTT 59.966 50.000 0.00 0.00 0.00 2.32
1719 1744 0.869730 GTCCGTGCGTGTACCATTTT 59.130 50.000 0.00 0.00 0.00 1.82
1720 1745 1.264826 GTCCGTGCGTGTACCATTTTT 59.735 47.619 0.00 0.00 0.00 1.94
1721 1746 1.264557 TCCGTGCGTGTACCATTTTTG 59.735 47.619 0.00 0.00 0.00 2.44
1838 1863 4.081309 CCTTCATACGTTGAGGTTTCCCTA 60.081 45.833 0.00 0.00 42.86 3.53
1892 1917 1.921230 GACCTGAGCGATCTCGTTTTC 59.079 52.381 0.90 0.00 42.26 2.29
1909 1934 2.023414 TTCGTGCACAGAACCGGACT 62.023 55.000 18.64 3.91 0.00 3.85
1915 1940 1.001706 GCACAGAACCGGACTTTTTCC 60.002 52.381 9.46 0.00 41.75 3.13
2008 2033 7.553044 GGAGGCTACAATCTGTGTAAAACTAAT 59.447 37.037 0.00 0.00 42.23 1.73
2148 2173 1.073216 CGTGATCAAGCTCTCGCGTT 61.073 55.000 5.77 0.00 42.32 4.84
2248 2273 1.269723 GAGTGGCAGGGCAACTTTTAC 59.730 52.381 0.00 0.00 43.63 2.01
2294 2319 0.892814 GTGAGCTCTGCCTTGGCTTT 60.893 55.000 16.19 0.00 36.37 3.51
2320 2345 3.751175 AGTATGAATGTTTGTGACACCCG 59.249 43.478 2.45 0.00 42.04 5.28
2810 2842 1.955458 TTGCCCCCAAACCAACTCCT 61.955 55.000 0.00 0.00 0.00 3.69
3075 3107 3.603532 CTGTAGTGCATGGTCATTGTCT 58.396 45.455 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.997482 GCCTAATGAAACAATTACTTATCGAAA 57.003 29.630 0.00 0.00 0.00 3.46
1 2 8.617809 GGCCTAATGAAACAATTACTTATCGAA 58.382 33.333 0.00 0.00 0.00 3.71
2 3 7.227910 GGGCCTAATGAAACAATTACTTATCGA 59.772 37.037 0.84 0.00 0.00 3.59
3 4 7.228706 AGGGCCTAATGAAACAATTACTTATCG 59.771 37.037 2.82 0.00 0.00 2.92
4 5 8.465273 AGGGCCTAATGAAACAATTACTTATC 57.535 34.615 2.82 0.00 0.00 1.75
6 7 9.930158 AATAGGGCCTAATGAAACAATTACTTA 57.070 29.630 18.91 0.00 0.00 2.24
7 8 8.838649 AATAGGGCCTAATGAAACAATTACTT 57.161 30.769 18.91 0.00 0.00 2.24
8 9 8.282256 AGAATAGGGCCTAATGAAACAATTACT 58.718 33.333 18.91 2.42 0.00 2.24
9 10 8.352942 CAGAATAGGGCCTAATGAAACAATTAC 58.647 37.037 18.91 0.26 0.00 1.89
10 11 8.058847 ACAGAATAGGGCCTAATGAAACAATTA 58.941 33.333 18.91 0.00 0.00 1.40
11 12 6.897413 ACAGAATAGGGCCTAATGAAACAATT 59.103 34.615 18.91 4.60 0.00 2.32
12 13 6.435164 ACAGAATAGGGCCTAATGAAACAAT 58.565 36.000 18.91 0.00 0.00 2.71
13 14 5.826643 ACAGAATAGGGCCTAATGAAACAA 58.173 37.500 18.91 0.00 0.00 2.83
14 15 5.450818 ACAGAATAGGGCCTAATGAAACA 57.549 39.130 18.91 0.00 0.00 2.83
15 16 6.826741 TGTAACAGAATAGGGCCTAATGAAAC 59.173 38.462 18.91 17.39 0.00 2.78
16 17 6.826741 GTGTAACAGAATAGGGCCTAATGAAA 59.173 38.462 18.91 7.78 36.32 2.69
17 18 6.069905 TGTGTAACAGAATAGGGCCTAATGAA 60.070 38.462 18.91 8.09 45.67 2.57
18 19 5.427157 TGTGTAACAGAATAGGGCCTAATGA 59.573 40.000 18.91 0.00 45.67 2.57
19 20 5.680619 TGTGTAACAGAATAGGGCCTAATG 58.319 41.667 18.91 18.03 45.67 1.90
20 21 5.968676 TGTGTAACAGAATAGGGCCTAAT 57.031 39.130 18.91 9.60 45.67 1.73
35 36 1.269621 CCCGATCGATCCCTGTGTAAC 60.270 57.143 18.66 0.00 37.35 2.50
36 37 1.037493 CCCGATCGATCCCTGTGTAA 58.963 55.000 18.66 0.00 0.00 2.41
37 38 0.826256 CCCCGATCGATCCCTGTGTA 60.826 60.000 18.66 0.00 0.00 2.90
38 39 2.134287 CCCCGATCGATCCCTGTGT 61.134 63.158 18.66 0.00 0.00 3.72
39 40 1.188219 ATCCCCGATCGATCCCTGTG 61.188 60.000 18.66 5.12 0.00 3.66
40 41 1.156330 ATCCCCGATCGATCCCTGT 59.844 57.895 18.66 0.00 0.00 4.00
41 42 1.188219 ACATCCCCGATCGATCCCTG 61.188 60.000 18.66 11.60 0.00 4.45
42 43 0.408309 TACATCCCCGATCGATCCCT 59.592 55.000 18.66 0.00 0.00 4.20
43 44 1.137086 CATACATCCCCGATCGATCCC 59.863 57.143 18.66 0.00 0.00 3.85
44 45 1.137086 CCATACATCCCCGATCGATCC 59.863 57.143 18.66 2.50 0.00 3.36
45 46 1.137086 CCCATACATCCCCGATCGATC 59.863 57.143 18.66 15.68 0.00 3.69
46 47 1.195115 CCCATACATCCCCGATCGAT 58.805 55.000 18.66 0.00 0.00 3.59
47 48 0.113580 TCCCATACATCCCCGATCGA 59.886 55.000 18.66 0.00 0.00 3.59
48 49 0.532573 CTCCCATACATCCCCGATCG 59.467 60.000 8.51 8.51 0.00 3.69
49 50 1.550976 GTCTCCCATACATCCCCGATC 59.449 57.143 0.00 0.00 0.00 3.69
50 51 1.645710 GTCTCCCATACATCCCCGAT 58.354 55.000 0.00 0.00 0.00 4.18
51 52 0.826256 CGTCTCCCATACATCCCCGA 60.826 60.000 0.00 0.00 0.00 5.14
52 53 1.666011 CGTCTCCCATACATCCCCG 59.334 63.158 0.00 0.00 0.00 5.73
53 54 1.371558 GCGTCTCCCATACATCCCC 59.628 63.158 0.00 0.00 0.00 4.81
54 55 1.371558 GGCGTCTCCCATACATCCC 59.628 63.158 0.00 0.00 0.00 3.85
55 56 0.687354 ATGGCGTCTCCCATACATCC 59.313 55.000 0.00 0.00 43.65 3.51
56 57 2.417719 GAATGGCGTCTCCCATACATC 58.582 52.381 0.00 0.00 44.68 3.06
57 58 1.072331 GGAATGGCGTCTCCCATACAT 59.928 52.381 0.00 0.00 44.68 2.29
58 59 0.468226 GGAATGGCGTCTCCCATACA 59.532 55.000 0.00 0.00 44.68 2.29
59 60 0.468226 TGGAATGGCGTCTCCCATAC 59.532 55.000 0.00 0.00 44.68 2.39
60 61 0.468226 GTGGAATGGCGTCTCCCATA 59.532 55.000 0.00 0.00 44.68 2.74
62 63 1.918293 AGTGGAATGGCGTCTCCCA 60.918 57.895 0.00 0.00 39.65 4.37
63 64 1.450312 CAGTGGAATGGCGTCTCCC 60.450 63.158 0.00 0.00 0.00 4.30
64 65 1.450312 CCAGTGGAATGGCGTCTCC 60.450 63.158 1.68 0.00 32.48 3.71
65 66 0.460987 CTCCAGTGGAATGGCGTCTC 60.461 60.000 14.17 0.00 40.41 3.36
66 67 1.194781 ACTCCAGTGGAATGGCGTCT 61.195 55.000 14.17 0.00 40.41 4.18
67 68 1.021390 CACTCCAGTGGAATGGCGTC 61.021 60.000 12.96 0.00 36.13 5.19
68 69 1.003355 CACTCCAGTGGAATGGCGT 60.003 57.895 12.96 3.90 38.83 5.68
69 70 2.401766 GCACTCCAGTGGAATGGCG 61.402 63.158 21.54 8.21 45.72 5.69
70 71 2.401766 CGCACTCCAGTGGAATGGC 61.402 63.158 21.54 18.33 45.72 4.40
71 72 1.746615 CCGCACTCCAGTGGAATGG 60.747 63.158 21.54 12.51 45.72 3.16
72 73 2.401766 GCCGCACTCCAGTGGAATG 61.402 63.158 16.39 16.39 45.72 2.67
73 74 2.045926 GCCGCACTCCAGTGGAAT 60.046 61.111 14.17 0.00 45.72 3.01
74 75 4.680237 CGCCGCACTCCAGTGGAA 62.680 66.667 14.17 0.00 45.72 3.53
78 79 4.664677 GTCACGCCGCACTCCAGT 62.665 66.667 0.00 0.00 0.00 4.00
81 82 3.701604 CTAGGTCACGCCGCACTCC 62.702 68.421 0.00 0.00 43.70 3.85
82 83 2.202623 CTAGGTCACGCCGCACTC 60.203 66.667 0.00 0.00 43.70 3.51
83 84 3.760035 CCTAGGTCACGCCGCACT 61.760 66.667 0.00 0.00 43.70 4.40
84 85 2.573609 ATTCCTAGGTCACGCCGCAC 62.574 60.000 9.08 0.00 43.70 5.34
85 86 1.895020 AATTCCTAGGTCACGCCGCA 61.895 55.000 9.08 0.00 43.70 5.69
86 87 1.152383 GAATTCCTAGGTCACGCCGC 61.152 60.000 9.08 0.00 43.70 6.53
87 88 0.529992 GGAATTCCTAGGTCACGCCG 60.530 60.000 17.73 0.00 43.70 6.46
88 89 0.529992 CGGAATTCCTAGGTCACGCC 60.530 60.000 22.05 4.67 37.58 5.68
89 90 0.458669 TCGGAATTCCTAGGTCACGC 59.541 55.000 22.05 0.00 0.00 5.34
90 91 1.749634 ACTCGGAATTCCTAGGTCACG 59.250 52.381 25.30 9.90 33.48 4.35
91 92 3.889520 AACTCGGAATTCCTAGGTCAC 57.110 47.619 25.30 0.00 33.48 3.67
92 93 3.581332 ACAAACTCGGAATTCCTAGGTCA 59.419 43.478 25.30 0.00 33.48 4.02
93 94 4.203654 ACAAACTCGGAATTCCTAGGTC 57.796 45.455 25.30 0.00 33.48 3.85
94 95 4.635699 AACAAACTCGGAATTCCTAGGT 57.364 40.909 25.30 18.97 33.48 3.08
95 96 4.395231 GGAAACAAACTCGGAATTCCTAGG 59.605 45.833 25.30 15.83 34.79 3.02
96 97 5.246307 AGGAAACAAACTCGGAATTCCTAG 58.754 41.667 21.40 21.40 43.54 3.02
97 98 5.012768 AGAGGAAACAAACTCGGAATTCCTA 59.987 40.000 22.05 10.75 44.91 2.94
98 99 4.072839 GAGGAAACAAACTCGGAATTCCT 58.927 43.478 22.05 4.64 46.91 3.36
99 100 4.072839 AGAGGAAACAAACTCGGAATTCC 58.927 43.478 15.01 15.01 38.72 3.01
100 101 5.334957 GGAAGAGGAAACAAACTCGGAATTC 60.335 44.000 0.00 0.00 38.72 2.17
101 102 4.519350 GGAAGAGGAAACAAACTCGGAATT 59.481 41.667 0.00 0.00 38.72 2.17
102 103 4.072839 GGAAGAGGAAACAAACTCGGAAT 58.927 43.478 0.00 0.00 38.72 3.01
103 104 3.135895 AGGAAGAGGAAACAAACTCGGAA 59.864 43.478 0.00 0.00 38.72 4.30
104 105 2.704065 AGGAAGAGGAAACAAACTCGGA 59.296 45.455 0.00 0.00 38.72 4.55
105 106 3.127425 AGGAAGAGGAAACAAACTCGG 57.873 47.619 0.00 0.00 38.72 4.63
106 107 5.500645 AAAAGGAAGAGGAAACAAACTCG 57.499 39.130 0.00 0.00 38.72 4.18
127 128 3.878160 AAAACCTCGAACTGCCAAAAA 57.122 38.095 0.00 0.00 0.00 1.94
128 129 3.878160 AAAAACCTCGAACTGCCAAAA 57.122 38.095 0.00 0.00 0.00 2.44
148 149 2.243810 ACGGGCTAGGCAATTCAAAAA 58.756 42.857 19.14 0.00 0.00 1.94
149 150 1.917872 ACGGGCTAGGCAATTCAAAA 58.082 45.000 19.14 0.00 0.00 2.44
150 151 2.639065 CTACGGGCTAGGCAATTCAAA 58.361 47.619 19.14 0.00 0.00 2.69
151 152 1.134220 CCTACGGGCTAGGCAATTCAA 60.134 52.381 19.14 0.00 35.72 2.69
152 153 0.468226 CCTACGGGCTAGGCAATTCA 59.532 55.000 19.14 0.00 35.72 2.57
153 154 0.756903 TCCTACGGGCTAGGCAATTC 59.243 55.000 19.14 0.00 42.03 2.17
154 155 0.468648 GTCCTACGGGCTAGGCAATT 59.531 55.000 19.14 3.73 42.03 2.32
155 156 1.408453 GGTCCTACGGGCTAGGCAAT 61.408 60.000 19.14 7.69 42.03 3.56
156 157 2.062177 GGTCCTACGGGCTAGGCAA 61.062 63.158 19.14 1.83 42.03 4.52
157 158 2.443390 GGTCCTACGGGCTAGGCA 60.443 66.667 19.14 0.00 42.03 4.75
158 159 3.232483 GGGTCCTACGGGCTAGGC 61.232 72.222 8.00 8.00 42.03 3.93
159 160 2.523657 GGGGTCCTACGGGCTAGG 60.524 72.222 0.00 0.00 43.54 3.02
160 161 2.910994 CGGGGTCCTACGGGCTAG 60.911 72.222 0.00 0.00 0.00 3.42
161 162 3.419580 TCGGGGTCCTACGGGCTA 61.420 66.667 6.66 0.00 0.00 3.93
164 165 2.363406 AAGTCGGGGTCCTACGGG 60.363 66.667 6.66 0.00 0.00 5.28
165 166 0.969409 AAGAAGTCGGGGTCCTACGG 60.969 60.000 6.66 0.00 0.00 4.02
166 167 0.893447 AAAGAAGTCGGGGTCCTACG 59.107 55.000 0.82 0.82 0.00 3.51
167 168 2.159324 CGTAAAGAAGTCGGGGTCCTAC 60.159 54.545 0.00 0.00 0.00 3.18
168 169 2.094675 CGTAAAGAAGTCGGGGTCCTA 58.905 52.381 0.00 0.00 0.00 2.94
169 170 0.893447 CGTAAAGAAGTCGGGGTCCT 59.107 55.000 0.00 0.00 0.00 3.85
170 171 0.738762 GCGTAAAGAAGTCGGGGTCC 60.739 60.000 0.00 0.00 0.00 4.46
171 172 1.074872 CGCGTAAAGAAGTCGGGGTC 61.075 60.000 0.00 0.00 34.74 4.46
172 173 1.080298 CGCGTAAAGAAGTCGGGGT 60.080 57.895 0.00 0.00 34.74 4.95
173 174 2.450345 GCGCGTAAAGAAGTCGGGG 61.450 63.158 8.43 0.00 37.83 5.73
174 175 1.411493 GAGCGCGTAAAGAAGTCGGG 61.411 60.000 8.43 0.00 39.74 5.14
175 176 1.730593 CGAGCGCGTAAAGAAGTCGG 61.731 60.000 8.43 0.00 0.00 4.79
176 177 1.619207 CGAGCGCGTAAAGAAGTCG 59.381 57.895 8.43 0.00 0.00 4.18
177 178 1.989163 CCGAGCGCGTAAAGAAGTC 59.011 57.895 8.43 0.00 35.23 3.01
178 179 2.092882 GCCGAGCGCGTAAAGAAGT 61.093 57.895 8.43 0.00 35.23 3.01
179 180 1.352156 AAGCCGAGCGCGTAAAGAAG 61.352 55.000 8.43 0.00 44.76 2.85
180 181 1.349259 GAAGCCGAGCGCGTAAAGAA 61.349 55.000 8.43 0.00 44.76 2.52
181 182 1.804326 GAAGCCGAGCGCGTAAAGA 60.804 57.895 8.43 0.00 44.76 2.52
182 183 2.695646 GAAGCCGAGCGCGTAAAG 59.304 61.111 8.43 0.00 44.76 1.85
183 184 2.812178 GGAAGCCGAGCGCGTAAA 60.812 61.111 8.43 0.00 44.76 2.01
184 185 4.807039 GGGAAGCCGAGCGCGTAA 62.807 66.667 8.43 0.00 44.76 3.18
190 191 4.821589 CCGACTGGGAAGCCGAGC 62.822 72.222 0.00 0.00 38.47 5.03
191 192 3.068691 TCCGACTGGGAAGCCGAG 61.069 66.667 0.00 0.00 43.62 4.63
199 200 1.803334 TCGTTTTCAATCCGACTGGG 58.197 50.000 0.00 0.00 35.24 4.45
200 201 2.412847 GCTTCGTTTTCAATCCGACTGG 60.413 50.000 0.00 0.00 0.00 4.00
201 202 2.412847 GGCTTCGTTTTCAATCCGACTG 60.413 50.000 0.00 0.00 0.00 3.51
202 203 1.804748 GGCTTCGTTTTCAATCCGACT 59.195 47.619 0.00 0.00 0.00 4.18
203 204 1.135774 GGGCTTCGTTTTCAATCCGAC 60.136 52.381 0.00 0.00 0.00 4.79
204 205 1.161843 GGGCTTCGTTTTCAATCCGA 58.838 50.000 0.00 0.00 0.00 4.55
205 206 0.878416 TGGGCTTCGTTTTCAATCCG 59.122 50.000 0.00 0.00 0.00 4.18
206 207 2.159382 TCTGGGCTTCGTTTTCAATCC 58.841 47.619 0.00 0.00 0.00 3.01
207 208 3.826466 CTTCTGGGCTTCGTTTTCAATC 58.174 45.455 0.00 0.00 0.00 2.67
208 209 2.029918 GCTTCTGGGCTTCGTTTTCAAT 60.030 45.455 0.00 0.00 0.00 2.57
209 210 1.336755 GCTTCTGGGCTTCGTTTTCAA 59.663 47.619 0.00 0.00 0.00 2.69
210 211 0.951558 GCTTCTGGGCTTCGTTTTCA 59.048 50.000 0.00 0.00 0.00 2.69
211 212 0.110192 CGCTTCTGGGCTTCGTTTTC 60.110 55.000 0.00 0.00 0.00 2.29
212 213 1.515521 CCGCTTCTGGGCTTCGTTTT 61.516 55.000 0.00 0.00 0.00 2.43
213 214 1.966451 CCGCTTCTGGGCTTCGTTT 60.966 57.895 0.00 0.00 0.00 3.60
214 215 2.358737 CCGCTTCTGGGCTTCGTT 60.359 61.111 0.00 0.00 0.00 3.85
222 223 3.995506 AATTCGGGGCCGCTTCTGG 62.996 63.158 18.79 1.44 39.59 3.86
223 224 1.595093 AAAATTCGGGGCCGCTTCTG 61.595 55.000 18.79 1.85 39.59 3.02
224 225 1.304134 AAAATTCGGGGCCGCTTCT 60.304 52.632 18.79 0.00 39.59 2.85
225 226 1.138883 GAAAATTCGGGGCCGCTTC 59.861 57.895 18.79 10.41 39.59 3.86
226 227 1.304134 AGAAAATTCGGGGCCGCTT 60.304 52.632 18.79 4.45 39.59 4.68
227 228 2.046285 CAGAAAATTCGGGGCCGCT 61.046 57.895 18.79 0.00 39.59 5.52
228 229 2.489751 CAGAAAATTCGGGGCCGC 59.510 61.111 10.38 10.38 39.59 6.53
229 230 2.489751 GCAGAAAATTCGGGGCCG 59.510 61.111 0.00 0.00 41.35 6.13
230 231 2.892640 GGCAGAAAATTCGGGGCC 59.107 61.111 0.00 0.00 36.91 5.80
231 232 1.873270 AACGGCAGAAAATTCGGGGC 61.873 55.000 0.00 4.96 0.00 5.80
232 233 1.455248 TAACGGCAGAAAATTCGGGG 58.545 50.000 0.00 0.00 0.00 5.73
233 234 6.548441 TTATATAACGGCAGAAAATTCGGG 57.452 37.500 0.00 0.00 0.00 5.14
234 235 9.537848 GTATTTATATAACGGCAGAAAATTCGG 57.462 33.333 0.00 0.00 0.00 4.30
238 239 9.840427 GCATGTATTTATATAACGGCAGAAAAT 57.160 29.630 0.00 0.00 0.00 1.82
239 240 8.841300 TGCATGTATTTATATAACGGCAGAAAA 58.159 29.630 0.00 0.00 0.00 2.29
240 241 8.384607 TGCATGTATTTATATAACGGCAGAAA 57.615 30.769 0.00 0.00 0.00 2.52
241 242 7.971183 TGCATGTATTTATATAACGGCAGAA 57.029 32.000 0.00 0.00 0.00 3.02
242 243 7.413988 GCATGCATGTATTTATATAACGGCAGA 60.414 37.037 26.79 0.00 0.00 4.26
243 244 6.688385 GCATGCATGTATTTATATAACGGCAG 59.312 38.462 26.79 0.00 0.00 4.85
244 245 6.150140 TGCATGCATGTATTTATATAACGGCA 59.850 34.615 26.79 10.48 0.00 5.69
245 246 6.468956 GTGCATGCATGTATTTATATAACGGC 59.531 38.462 25.64 7.95 0.00 5.68
246 247 7.525759 TGTGCATGCATGTATTTATATAACGG 58.474 34.615 25.64 0.00 0.00 4.44
247 248 7.216881 GCTGTGCATGCATGTATTTATATAACG 59.783 37.037 25.64 3.62 0.00 3.18
248 249 7.216881 CGCTGTGCATGCATGTATTTATATAAC 59.783 37.037 25.64 5.93 0.00 1.89
249 250 7.094848 ACGCTGTGCATGCATGTATTTATATAA 60.095 33.333 25.64 0.00 0.00 0.98
250 251 6.371271 ACGCTGTGCATGCATGTATTTATATA 59.629 34.615 25.64 5.06 0.00 0.86
251 252 5.181811 ACGCTGTGCATGCATGTATTTATAT 59.818 36.000 25.64 6.57 0.00 0.86
252 253 4.514816 ACGCTGTGCATGCATGTATTTATA 59.485 37.500 25.64 8.16 0.00 0.98
253 254 3.316029 ACGCTGTGCATGCATGTATTTAT 59.684 39.130 25.64 7.06 0.00 1.40
254 255 2.682352 ACGCTGTGCATGCATGTATTTA 59.318 40.909 25.64 12.63 0.00 1.40
255 256 1.473677 ACGCTGTGCATGCATGTATTT 59.526 42.857 25.64 4.20 0.00 1.40
256 257 1.064505 GACGCTGTGCATGCATGTATT 59.935 47.619 25.64 8.76 0.00 1.89
257 258 0.659427 GACGCTGTGCATGCATGTAT 59.341 50.000 25.64 8.91 0.00 2.29
258 259 0.673022 TGACGCTGTGCATGCATGTA 60.673 50.000 25.64 20.88 0.00 2.29
259 260 1.918868 CTGACGCTGTGCATGCATGT 61.919 55.000 25.64 19.23 0.00 3.21
260 261 1.226295 CTGACGCTGTGCATGCATG 60.226 57.895 25.64 22.70 0.00 4.06
261 262 0.746923 ATCTGACGCTGTGCATGCAT 60.747 50.000 25.64 7.13 0.00 3.96
262 263 0.956902 AATCTGACGCTGTGCATGCA 60.957 50.000 18.46 18.46 0.00 3.96
263 264 1.009078 TAATCTGACGCTGTGCATGC 58.991 50.000 11.82 11.82 0.00 4.06
264 265 4.053983 AGTATAATCTGACGCTGTGCATG 58.946 43.478 0.00 0.00 0.00 4.06
265 266 4.327982 AGTATAATCTGACGCTGTGCAT 57.672 40.909 0.00 0.00 0.00 3.96
266 267 3.801114 AGTATAATCTGACGCTGTGCA 57.199 42.857 0.00 0.00 0.00 4.57
267 268 5.692204 ACAATAGTATAATCTGACGCTGTGC 59.308 40.000 0.00 0.00 0.00 4.57
268 269 7.700322 AACAATAGTATAATCTGACGCTGTG 57.300 36.000 0.00 0.00 0.00 3.66
269 270 8.718102 AAAACAATAGTATAATCTGACGCTGT 57.282 30.769 0.00 0.00 0.00 4.40
270 271 7.998767 CGAAAACAATAGTATAATCTGACGCTG 59.001 37.037 0.00 0.00 0.00 5.18
271 272 7.306632 GCGAAAACAATAGTATAATCTGACGCT 60.307 37.037 0.00 0.00 35.67 5.07
272 273 6.786103 GCGAAAACAATAGTATAATCTGACGC 59.214 38.462 0.00 0.00 0.00 5.19
273 274 7.281484 GGCGAAAACAATAGTATAATCTGACG 58.719 38.462 0.00 0.00 0.00 4.35
274 275 7.568861 CGGGCGAAAACAATAGTATAATCTGAC 60.569 40.741 0.00 0.00 0.00 3.51
275 276 6.422701 CGGGCGAAAACAATAGTATAATCTGA 59.577 38.462 0.00 0.00 0.00 3.27
276 277 6.422701 TCGGGCGAAAACAATAGTATAATCTG 59.577 38.462 0.00 0.00 0.00 2.90
277 278 6.423001 GTCGGGCGAAAACAATAGTATAATCT 59.577 38.462 0.00 0.00 0.00 2.40
278 279 6.587651 GTCGGGCGAAAACAATAGTATAATC 58.412 40.000 0.00 0.00 0.00 1.75
279 280 5.176223 CGTCGGGCGAAAACAATAGTATAAT 59.824 40.000 0.00 0.00 44.77 1.28
280 281 4.503734 CGTCGGGCGAAAACAATAGTATAA 59.496 41.667 0.00 0.00 44.77 0.98
281 282 4.043750 CGTCGGGCGAAAACAATAGTATA 58.956 43.478 0.00 0.00 44.77 1.47
282 283 2.861935 CGTCGGGCGAAAACAATAGTAT 59.138 45.455 0.00 0.00 44.77 2.12
283 284 2.261345 CGTCGGGCGAAAACAATAGTA 58.739 47.619 0.00 0.00 44.77 1.82
284 285 1.073177 CGTCGGGCGAAAACAATAGT 58.927 50.000 0.00 0.00 44.77 2.12
285 286 3.869866 CGTCGGGCGAAAACAATAG 57.130 52.632 0.00 0.00 44.77 1.73
314 315 0.747255 ACGGAGCTAGTGATTCGCAT 59.253 50.000 0.00 0.00 0.00 4.73
323 324 1.067495 GCTTCTTGACACGGAGCTAGT 60.067 52.381 4.97 0.00 0.00 2.57
326 327 0.320247 CTGCTTCTTGACACGGAGCT 60.320 55.000 13.01 0.00 0.00 4.09
330 331 0.947244 AAAGCTGCTTCTTGACACGG 59.053 50.000 16.28 0.00 0.00 4.94
334 335 4.925068 TGAAAGAAAAGCTGCTTCTTGAC 58.075 39.130 16.28 16.87 41.24 3.18
343 344 0.242017 CGCCCCTGAAAGAAAAGCTG 59.758 55.000 0.00 0.00 34.07 4.24
355 356 1.172180 TGCTTCTTGAAACGCCCCTG 61.172 55.000 0.00 0.00 0.00 4.45
361 362 2.517321 GCTAGCTGCTTCTTGAAACG 57.483 50.000 7.79 0.00 38.95 3.60
379 383 3.114616 ATCGTCACACGCAGCAGC 61.115 61.111 0.00 0.00 42.21 5.25
380 384 2.774126 CATCGTCACACGCAGCAG 59.226 61.111 0.00 0.00 42.21 4.24
381 385 3.413861 GCATCGTCACACGCAGCA 61.414 61.111 0.00 0.00 42.21 4.41
382 386 4.152625 GGCATCGTCACACGCAGC 62.153 66.667 4.60 4.60 42.21 5.25
383 387 3.490759 GGGCATCGTCACACGCAG 61.491 66.667 0.00 0.00 42.21 5.18
384 388 4.306967 TGGGCATCGTCACACGCA 62.307 61.111 0.00 0.00 42.21 5.24
385 389 3.788766 GTGGGCATCGTCACACGC 61.789 66.667 0.00 0.00 42.21 5.34
400 404 0.390860 CCCTGGATCTCTTAGCCGTG 59.609 60.000 0.00 0.00 35.94 4.94
404 408 0.316841 CTCGCCCTGGATCTCTTAGC 59.683 60.000 0.00 0.00 0.00 3.09
455 459 3.793144 CGTCTTGGCTGCTTCCGC 61.793 66.667 0.00 0.00 0.00 5.54
542 546 4.735132 CGTCTCGGCGGCTTCCAA 62.735 66.667 7.21 0.00 0.00 3.53
843 850 6.570692 ACTATCCTTGTTCCGTAATGTAGTG 58.429 40.000 0.00 0.00 0.00 2.74
851 858 9.467258 CGAAAAATATACTATCCTTGTTCCGTA 57.533 33.333 0.00 0.00 0.00 4.02
853 860 8.583810 TCGAAAAATATACTATCCTTGTTCCG 57.416 34.615 0.00 0.00 0.00 4.30
955 967 1.141053 CTGTTATCAGGGGCAGGGTAC 59.859 57.143 0.00 0.00 37.97 3.34
964 976 0.106519 CCTTGGGGCTGTTATCAGGG 60.107 60.000 3.05 0.00 41.57 4.45
999 1015 0.806102 CCGCGATCTTGACCGACATT 60.806 55.000 8.23 0.00 0.00 2.71
1071 1095 0.249699 TGTGATCCAAGTTGTCGCGT 60.250 50.000 5.77 0.00 0.00 6.01
1128 1152 1.271379 ACCTCTTCGGTGATGGTTTGG 60.271 52.381 0.00 0.00 46.80 3.28
1236 1261 5.066375 GCATCAAGTGGATATAGTGCAACAA 59.934 40.000 0.00 0.00 34.75 2.83
1277 1302 7.872993 AGCAAAGCTCGTAATTATGCTCTATTA 59.127 33.333 9.81 0.00 38.16 0.98
1284 1309 5.403897 TGTAGCAAAGCTCGTAATTATGC 57.596 39.130 0.00 0.00 40.44 3.14
1285 1310 7.177498 TGATGTAGCAAAGCTCGTAATTATG 57.823 36.000 0.00 0.00 40.44 1.90
1286 1311 7.516785 CGTTGATGTAGCAAAGCTCGTAATTAT 60.517 37.037 0.00 0.00 40.44 1.28
1287 1312 6.237728 CGTTGATGTAGCAAAGCTCGTAATTA 60.238 38.462 0.00 0.00 40.44 1.40
1288 1313 5.445939 CGTTGATGTAGCAAAGCTCGTAATT 60.446 40.000 0.00 0.00 40.44 1.40
1289 1314 4.032900 CGTTGATGTAGCAAAGCTCGTAAT 59.967 41.667 0.00 0.00 40.44 1.89
1290 1315 3.366724 CGTTGATGTAGCAAAGCTCGTAA 59.633 43.478 0.00 0.00 40.44 3.18
1291 1316 2.921121 CGTTGATGTAGCAAAGCTCGTA 59.079 45.455 0.00 0.00 40.44 3.43
1292 1317 1.726791 CGTTGATGTAGCAAAGCTCGT 59.273 47.619 0.00 0.00 40.44 4.18
1293 1318 1.061131 CCGTTGATGTAGCAAAGCTCG 59.939 52.381 0.00 0.00 40.44 5.03
1294 1319 2.094417 GTCCGTTGATGTAGCAAAGCTC 59.906 50.000 0.00 0.00 40.44 4.09
1295 1320 2.076863 GTCCGTTGATGTAGCAAAGCT 58.923 47.619 0.00 0.00 43.41 3.74
1296 1321 1.804151 TGTCCGTTGATGTAGCAAAGC 59.196 47.619 0.00 0.00 0.00 3.51
1297 1322 4.685169 ATTGTCCGTTGATGTAGCAAAG 57.315 40.909 0.00 0.00 0.00 2.77
1298 1323 5.390040 CGTAATTGTCCGTTGATGTAGCAAA 60.390 40.000 0.00 0.00 0.00 3.68
1299 1324 4.092237 CGTAATTGTCCGTTGATGTAGCAA 59.908 41.667 0.00 0.00 0.00 3.91
1300 1325 3.615056 CGTAATTGTCCGTTGATGTAGCA 59.385 43.478 0.00 0.00 0.00 3.49
1301 1326 3.000925 CCGTAATTGTCCGTTGATGTAGC 59.999 47.826 0.00 0.00 0.00 3.58
1302 1327 3.554324 CCCGTAATTGTCCGTTGATGTAG 59.446 47.826 0.00 0.00 0.00 2.74
1303 1328 3.523547 CCCGTAATTGTCCGTTGATGTA 58.476 45.455 0.00 0.00 0.00 2.29
1304 1329 2.352388 CCCGTAATTGTCCGTTGATGT 58.648 47.619 0.00 0.00 0.00 3.06
1305 1330 1.063469 GCCCGTAATTGTCCGTTGATG 59.937 52.381 0.00 0.00 0.00 3.07
1306 1331 1.065709 AGCCCGTAATTGTCCGTTGAT 60.066 47.619 0.00 0.00 0.00 2.57
1307 1332 0.322322 AGCCCGTAATTGTCCGTTGA 59.678 50.000 0.00 0.00 0.00 3.18
1308 1333 0.446222 CAGCCCGTAATTGTCCGTTG 59.554 55.000 0.00 0.00 0.00 4.10
1309 1334 0.675522 CCAGCCCGTAATTGTCCGTT 60.676 55.000 0.00 0.00 0.00 4.44
1310 1335 1.078708 CCAGCCCGTAATTGTCCGT 60.079 57.895 0.00 0.00 0.00 4.69
1311 1336 0.675522 AACCAGCCCGTAATTGTCCG 60.676 55.000 0.00 0.00 0.00 4.79
1312 1337 2.011947 GTAACCAGCCCGTAATTGTCC 58.988 52.381 0.00 0.00 0.00 4.02
1313 1338 1.662122 CGTAACCAGCCCGTAATTGTC 59.338 52.381 0.00 0.00 0.00 3.18
1314 1339 1.676615 CCGTAACCAGCCCGTAATTGT 60.677 52.381 0.00 0.00 0.00 2.71
1315 1340 1.011333 CCGTAACCAGCCCGTAATTG 58.989 55.000 0.00 0.00 0.00 2.32
1316 1341 0.107557 CCCGTAACCAGCCCGTAATT 60.108 55.000 0.00 0.00 0.00 1.40
1317 1342 1.523524 CCCGTAACCAGCCCGTAAT 59.476 57.895 0.00 0.00 0.00 1.89
1318 1343 2.658064 CCCCGTAACCAGCCCGTAA 61.658 63.158 0.00 0.00 0.00 3.18
1319 1344 3.076278 CCCCGTAACCAGCCCGTA 61.076 66.667 0.00 0.00 0.00 4.02
1323 1348 4.832608 CTCGCCCCGTAACCAGCC 62.833 72.222 0.00 0.00 0.00 4.85
1324 1349 4.832608 CCTCGCCCCGTAACCAGC 62.833 72.222 0.00 0.00 0.00 4.85
1325 1350 2.951101 AACCTCGCCCCGTAACCAG 61.951 63.158 0.00 0.00 0.00 4.00
1326 1351 2.924101 AACCTCGCCCCGTAACCA 60.924 61.111 0.00 0.00 0.00 3.67
1327 1352 2.435410 CAACCTCGCCCCGTAACC 60.435 66.667 0.00 0.00 0.00 2.85
1328 1353 1.447314 CTCAACCTCGCCCCGTAAC 60.447 63.158 0.00 0.00 0.00 2.50
1329 1354 1.474332 AACTCAACCTCGCCCCGTAA 61.474 55.000 0.00 0.00 0.00 3.18
1330 1355 1.909781 AACTCAACCTCGCCCCGTA 60.910 57.895 0.00 0.00 0.00 4.02
1331 1356 3.239253 AACTCAACCTCGCCCCGT 61.239 61.111 0.00 0.00 0.00 5.28
1332 1357 2.742372 CAACTCAACCTCGCCCCG 60.742 66.667 0.00 0.00 0.00 5.73
1333 1358 1.671379 GACAACTCAACCTCGCCCC 60.671 63.158 0.00 0.00 0.00 5.80
1334 1359 0.534203 TTGACAACTCAACCTCGCCC 60.534 55.000 0.00 0.00 31.00 6.13
1335 1360 1.002792 GTTTGACAACTCAACCTCGCC 60.003 52.381 0.00 0.00 36.06 5.54
1336 1361 1.940613 AGTTTGACAACTCAACCTCGC 59.059 47.619 0.00 0.00 39.15 5.03
1337 1362 2.936498 ACAGTTTGACAACTCAACCTCG 59.064 45.455 0.00 0.00 41.69 4.63
1338 1363 4.965119 AACAGTTTGACAACTCAACCTC 57.035 40.909 0.00 0.00 41.69 3.85
1339 1364 6.183360 CCAATAACAGTTTGACAACTCAACCT 60.183 38.462 0.00 0.00 41.69 3.50
1340 1365 5.977129 CCAATAACAGTTTGACAACTCAACC 59.023 40.000 0.00 0.00 41.69 3.77
1341 1366 6.791303 TCCAATAACAGTTTGACAACTCAAC 58.209 36.000 0.00 0.00 41.69 3.18
1342 1367 7.581213 ATCCAATAACAGTTTGACAACTCAA 57.419 32.000 0.00 0.00 41.69 3.02
1343 1368 7.581213 AATCCAATAACAGTTTGACAACTCA 57.419 32.000 0.00 0.00 41.69 3.41
1344 1369 9.959749 TTTAATCCAATAACAGTTTGACAACTC 57.040 29.630 0.00 0.00 41.69 3.01
1345 1370 9.965824 CTTTAATCCAATAACAGTTTGACAACT 57.034 29.630 0.00 0.00 44.72 3.16
1346 1371 9.959749 TCTTTAATCCAATAACAGTTTGACAAC 57.040 29.630 0.00 0.00 0.00 3.32
1348 1373 8.792633 CCTCTTTAATCCAATAACAGTTTGACA 58.207 33.333 0.00 0.00 0.00 3.58
1349 1374 8.244113 CCCTCTTTAATCCAATAACAGTTTGAC 58.756 37.037 0.00 0.00 0.00 3.18
1350 1375 8.167392 TCCCTCTTTAATCCAATAACAGTTTGA 58.833 33.333 0.00 0.00 0.00 2.69
1351 1376 8.348285 TCCCTCTTTAATCCAATAACAGTTTG 57.652 34.615 0.00 0.00 0.00 2.93
1352 1377 7.615757 CCTCCCTCTTTAATCCAATAACAGTTT 59.384 37.037 0.00 0.00 0.00 2.66
1353 1378 7.036863 TCCTCCCTCTTTAATCCAATAACAGTT 60.037 37.037 0.00 0.00 0.00 3.16
1354 1379 6.447084 TCCTCCCTCTTTAATCCAATAACAGT 59.553 38.462 0.00 0.00 0.00 3.55
1355 1380 6.900194 TCCTCCCTCTTTAATCCAATAACAG 58.100 40.000 0.00 0.00 0.00 3.16
1356 1381 6.901615 TCCTCCCTCTTTAATCCAATAACA 57.098 37.500 0.00 0.00 0.00 2.41
1357 1382 6.773200 CCTTCCTCCCTCTTTAATCCAATAAC 59.227 42.308 0.00 0.00 0.00 1.89
1358 1383 6.126185 CCCTTCCTCCCTCTTTAATCCAATAA 60.126 42.308 0.00 0.00 0.00 1.40
1359 1384 5.372661 CCCTTCCTCCCTCTTTAATCCAATA 59.627 44.000 0.00 0.00 0.00 1.90
1360 1385 4.168871 CCCTTCCTCCCTCTTTAATCCAAT 59.831 45.833 0.00 0.00 0.00 3.16
1361 1386 3.527665 CCCTTCCTCCCTCTTTAATCCAA 59.472 47.826 0.00 0.00 0.00 3.53
1362 1387 3.123273 CCCTTCCTCCCTCTTTAATCCA 58.877 50.000 0.00 0.00 0.00 3.41
1363 1388 2.158593 GCCCTTCCTCCCTCTTTAATCC 60.159 54.545 0.00 0.00 0.00 3.01
1364 1389 2.158593 GGCCCTTCCTCCCTCTTTAATC 60.159 54.545 0.00 0.00 0.00 1.75
1365 1390 1.853622 GGCCCTTCCTCCCTCTTTAAT 59.146 52.381 0.00 0.00 0.00 1.40
1366 1391 1.296002 GGCCCTTCCTCCCTCTTTAA 58.704 55.000 0.00 0.00 0.00 1.52
1367 1392 0.623617 GGGCCCTTCCTCCCTCTTTA 60.624 60.000 17.04 0.00 39.46 1.85
1368 1393 1.931180 GGGCCCTTCCTCCCTCTTT 60.931 63.158 17.04 0.00 39.46 2.52
1369 1394 2.286502 GGGCCCTTCCTCCCTCTT 60.287 66.667 17.04 0.00 39.46 2.85
1370 1395 4.439901 GGGGCCCTTCCTCCCTCT 62.440 72.222 24.38 0.00 42.25 3.69
1663 1688 0.179001 CGGACCCCTTCCAACAAACT 60.179 55.000 0.00 0.00 46.29 2.66
1664 1689 0.466739 ACGGACCCCTTCCAACAAAC 60.467 55.000 0.00 0.00 46.29 2.93
1665 1690 0.259356 AACGGACCCCTTCCAACAAA 59.741 50.000 0.00 0.00 46.29 2.83
1666 1691 0.466555 CAACGGACCCCTTCCAACAA 60.467 55.000 0.00 0.00 46.29 2.83
1667 1692 1.149627 CAACGGACCCCTTCCAACA 59.850 57.895 0.00 0.00 46.29 3.33
1668 1693 2.265904 GCAACGGACCCCTTCCAAC 61.266 63.158 0.00 0.00 46.29 3.77
1669 1694 2.114411 GCAACGGACCCCTTCCAA 59.886 61.111 0.00 0.00 46.29 3.53
1670 1695 2.758207 TTGCAACGGACCCCTTCCA 61.758 57.895 0.00 0.00 46.29 3.53
1671 1696 2.114411 TTGCAACGGACCCCTTCC 59.886 61.111 0.00 0.00 41.75 3.46
1672 1697 2.265904 GGTTGCAACGGACCCCTTC 61.266 63.158 22.67 2.30 0.00 3.46
1673 1698 2.203437 GGTTGCAACGGACCCCTT 60.203 61.111 22.67 0.00 0.00 3.95
1677 1702 3.534054 TACGGGGTTGCAACGGACC 62.534 63.158 22.67 21.36 35.14 4.46
1678 1703 0.956902 ATTACGGGGTTGCAACGGAC 60.957 55.000 22.67 14.95 0.00 4.79
1679 1704 0.674269 GATTACGGGGTTGCAACGGA 60.674 55.000 22.67 6.10 0.00 4.69
1680 1705 0.956410 TGATTACGGGGTTGCAACGG 60.956 55.000 22.67 16.25 0.00 4.44
1681 1706 0.446222 CTGATTACGGGGTTGCAACG 59.554 55.000 22.67 14.40 0.00 4.10
1682 1707 1.467342 GACTGATTACGGGGTTGCAAC 59.533 52.381 21.59 21.59 0.00 4.17
1683 1708 1.612199 GGACTGATTACGGGGTTGCAA 60.612 52.381 0.00 0.00 0.00 4.08
1684 1709 0.035820 GGACTGATTACGGGGTTGCA 60.036 55.000 0.00 0.00 0.00 4.08
1685 1710 1.087771 CGGACTGATTACGGGGTTGC 61.088 60.000 0.00 0.00 0.00 4.17
1686 1711 0.248289 ACGGACTGATTACGGGGTTG 59.752 55.000 0.00 0.00 0.00 3.77
1687 1712 0.248289 CACGGACTGATTACGGGGTT 59.752 55.000 0.00 0.00 0.00 4.11
1688 1713 1.895238 CACGGACTGATTACGGGGT 59.105 57.895 0.00 0.00 0.00 4.95
1689 1714 1.520787 GCACGGACTGATTACGGGG 60.521 63.158 0.00 0.00 0.00 5.73
1690 1715 1.876714 CGCACGGACTGATTACGGG 60.877 63.158 0.00 0.00 0.00 5.28
1691 1716 1.153901 ACGCACGGACTGATTACGG 60.154 57.895 0.00 0.00 0.00 4.02
1692 1717 0.731514 ACACGCACGGACTGATTACG 60.732 55.000 0.00 0.00 0.00 3.18
1693 1718 1.916000 GTACACGCACGGACTGATTAC 59.084 52.381 0.00 0.00 0.00 1.89
1694 1719 1.135315 GGTACACGCACGGACTGATTA 60.135 52.381 0.00 0.00 0.00 1.75
1695 1720 0.389426 GGTACACGCACGGACTGATT 60.389 55.000 0.00 0.00 0.00 2.57
1696 1721 1.214589 GGTACACGCACGGACTGAT 59.785 57.895 0.00 0.00 0.00 2.90
1697 1722 2.194889 TGGTACACGCACGGACTGA 61.195 57.895 0.00 0.00 0.00 3.41
1698 1723 2.337170 TGGTACACGCACGGACTG 59.663 61.111 0.00 0.00 0.00 3.51
1710 1735 7.704899 GGTGAGTAATTATGCCAAAAATGGTAC 59.295 37.037 0.00 0.00 0.00 3.34
1711 1736 7.617723 AGGTGAGTAATTATGCCAAAAATGGTA 59.382 33.333 0.00 0.00 0.00 3.25
1712 1737 6.440328 AGGTGAGTAATTATGCCAAAAATGGT 59.560 34.615 0.00 0.00 0.00 3.55
1713 1738 6.877236 AGGTGAGTAATTATGCCAAAAATGG 58.123 36.000 0.00 0.00 0.00 3.16
1714 1739 8.465999 TGTAGGTGAGTAATTATGCCAAAAATG 58.534 33.333 0.00 0.00 0.00 2.32
1715 1740 8.588290 TGTAGGTGAGTAATTATGCCAAAAAT 57.412 30.769 0.00 0.00 0.00 1.82
1716 1741 8.588290 ATGTAGGTGAGTAATTATGCCAAAAA 57.412 30.769 0.00 0.00 0.00 1.94
1717 1742 9.337396 CTATGTAGGTGAGTAATTATGCCAAAA 57.663 33.333 0.00 0.00 0.00 2.44
1718 1743 8.491134 ACTATGTAGGTGAGTAATTATGCCAAA 58.509 33.333 0.00 0.00 0.00 3.28
1719 1744 8.029782 ACTATGTAGGTGAGTAATTATGCCAA 57.970 34.615 0.00 0.00 0.00 4.52
1720 1745 7.612065 ACTATGTAGGTGAGTAATTATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
1721 1746 7.931948 ACAACTATGTAGGTGAGTAATTATGCC 59.068 37.037 11.81 0.00 43.66 4.40
1838 1863 3.412237 TTAGTAGCGCCCTTGACTTTT 57.588 42.857 2.29 0.00 0.00 2.27
1892 1917 1.157870 AAAGTCCGGTTCTGTGCACG 61.158 55.000 13.13 7.36 0.00 5.34
1909 1934 2.145536 GGTAAAGACCGCTCGGAAAAA 58.854 47.619 15.95 0.00 35.52 1.94
2008 2033 0.614415 GGTTGGCCATGACCCATCAA 60.614 55.000 14.87 0.00 38.69 2.57
2148 2173 2.498644 TGTCCAACAGAAACCACACA 57.501 45.000 0.00 0.00 0.00 3.72
2294 2319 6.205853 GGGTGTCACAAACATTCATACTACAA 59.794 38.462 5.12 0.00 40.80 2.41
2513 2545 7.459795 TTTCAAAAGGCATTTTTCCAAGTTT 57.540 28.000 6.30 0.00 36.87 2.66
2514 2546 7.459795 TTTTCAAAAGGCATTTTTCCAAGTT 57.540 28.000 6.30 0.00 36.87 2.66
2521 2553 9.176460 TCAAAGAGATTTTCAAAAGGCATTTTT 57.824 25.926 6.30 0.00 39.55 1.94
2810 2842 4.202749 TGAGGGTTCAAAGTACTAGGGAGA 60.203 45.833 0.00 0.00 0.00 3.71
3075 3107 8.964476 AACTGTTCTCTGAATTTTCTGAACTA 57.036 30.769 16.77 8.93 35.23 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.