Multiple sequence alignment - TraesCS7D01G188000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G188000 chr7D 100.000 4847 0 0 1 4847 140330654 140325808 0.000000e+00 8951.0
1 TraesCS7D01G188000 chr7D 79.057 530 102 5 2938 3462 140732686 140732161 5.970000e-94 355.0
2 TraesCS7D01G188000 chr7D 91.262 103 9 0 4530 4632 80971097 80971199 1.820000e-29 141.0
3 TraesCS7D01G188000 chr7A 94.922 4155 149 35 1 4129 142161487 142157369 0.000000e+00 6447.0
4 TraesCS7D01G188000 chr7A 94.207 397 11 4 4131 4524 142157284 142156897 3.230000e-166 595.0
5 TraesCS7D01G188000 chr7B 93.995 3364 103 28 964 4289 105561474 105558172 0.000000e+00 5001.0
6 TraesCS7D01G188000 chr7B 89.323 665 49 12 1 660 105562613 105561966 0.000000e+00 815.0
7 TraesCS7D01G188000 chr7B 78.072 529 109 5 2938 3462 105830422 105829897 1.300000e-85 327.0
8 TraesCS7D01G188000 chr7B 85.075 67 3 4 906 965 105561690 105561624 1.460000e-05 62.1
9 TraesCS7D01G188000 chr6B 82.824 524 85 4 2902 3422 590667589 590667068 9.500000e-127 464.0
10 TraesCS7D01G188000 chr6B 93.069 101 7 0 4531 4631 529769799 529769699 1.090000e-31 148.0
11 TraesCS7D01G188000 chr6B 90.476 105 10 0 4531 4635 55105533 55105637 6.540000e-29 139.0
12 TraesCS7D01G188000 chr6B 89.189 111 11 1 4518 4628 665514644 665514753 2.350000e-28 137.0
13 TraesCS7D01G188000 chr6D 82.037 540 93 3 2902 3439 394618342 394617805 1.590000e-124 457.0
14 TraesCS7D01G188000 chr6D 90.654 107 8 2 4532 4638 465968961 465968857 1.820000e-29 141.0
15 TraesCS7D01G188000 chr6A 82.306 503 89 0 2937 3439 540616842 540616340 2.070000e-118 436.0
16 TraesCS7D01G188000 chr2B 90.826 109 10 0 4531 4639 382599095 382598987 3.910000e-31 147.0
17 TraesCS7D01G188000 chr2B 91.346 104 9 0 4531 4634 17207953 17207850 5.060000e-30 143.0
18 TraesCS7D01G188000 chr1D 93.814 97 6 0 4532 4628 483907582 483907678 3.910000e-31 147.0
19 TraesCS7D01G188000 chr5A 91.346 104 9 0 4531 4634 3881809 3881706 5.060000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G188000 chr7D 140325808 140330654 4846 True 8951.000000 8951 100.000000 1 4847 1 chr7D.!!$R1 4846
1 TraesCS7D01G188000 chr7D 140732161 140732686 525 True 355.000000 355 79.057000 2938 3462 1 chr7D.!!$R2 524
2 TraesCS7D01G188000 chr7A 142156897 142161487 4590 True 3521.000000 6447 94.564500 1 4524 2 chr7A.!!$R1 4523
3 TraesCS7D01G188000 chr7B 105558172 105562613 4441 True 1959.366667 5001 89.464333 1 4289 3 chr7B.!!$R2 4288
4 TraesCS7D01G188000 chr7B 105829897 105830422 525 True 327.000000 327 78.072000 2938 3462 1 chr7B.!!$R1 524
5 TraesCS7D01G188000 chr6B 590667068 590667589 521 True 464.000000 464 82.824000 2902 3422 1 chr6B.!!$R2 520
6 TraesCS7D01G188000 chr6D 394617805 394618342 537 True 457.000000 457 82.037000 2902 3439 1 chr6D.!!$R1 537
7 TraesCS7D01G188000 chr6A 540616340 540616842 502 True 436.000000 436 82.306000 2937 3439 1 chr6A.!!$R1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 190 0.769873 GCATGAGGAGGGGATCACAT 59.230 55.000 0.00 0.0 0.00 3.21 F
1109 1349 0.041312 CGGCCGCCATTATTTTCTCG 60.041 55.000 14.67 0.0 0.00 4.04 F
1785 2055 0.253347 AGATTTGGAGAGCTGGGGGA 60.253 55.000 0.00 0.0 0.00 4.81 F
2541 2820 1.923227 GCAGTAAAGTGGCTTCCCGC 61.923 60.000 0.00 0.0 42.11 6.13 F
3442 3725 2.112815 GGCGCGCCCTGTTAATCTT 61.113 57.895 39.89 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1813 0.889186 GTTCCGAAAAGCTGGAGCCA 60.889 55.000 0.00 0.0 43.38 4.75 R
1930 2200 1.266175 GAGACGACGTTCTTCACCTCA 59.734 52.381 0.13 0.0 0.00 3.86 R
3494 3777 0.106918 TTCTTCACCGGGCAAGTGTT 60.107 50.000 6.32 0.0 36.58 3.32 R
3495 3778 0.110486 ATTCTTCACCGGGCAAGTGT 59.890 50.000 6.32 0.0 36.58 3.55 R
4725 5105 0.396811 AACCCGCTAGTGTTGCTCTT 59.603 50.000 1.99 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 9.482627 AAGAATACAAAATATGAACCGCAAAAA 57.517 25.926 0.00 0.00 0.00 1.94
109 111 6.480981 CCATGGATGAAAATTTCTGTAATGGC 59.519 38.462 5.56 0.00 0.00 4.40
114 116 3.508744 AAATTTCTGTAATGGCGCCAG 57.491 42.857 35.36 20.73 0.00 4.85
188 190 0.769873 GCATGAGGAGGGGATCACAT 59.230 55.000 0.00 0.00 0.00 3.21
241 243 4.510167 AGGGAGGTGGACAGATAAAATG 57.490 45.455 0.00 0.00 0.00 2.32
282 284 6.403964 CGATCTATTAATTCCCATGCATGTGG 60.404 42.308 24.58 22.95 39.05 4.17
396 400 6.448369 TTTCAAAACTCCCCTCTAATCTCA 57.552 37.500 0.00 0.00 0.00 3.27
399 403 5.488919 TCAAAACTCCCCTCTAATCTCATGT 59.511 40.000 0.00 0.00 0.00 3.21
407 411 3.553922 CCTCTAATCTCATGTTCGCTCCC 60.554 52.174 0.00 0.00 0.00 4.30
431 435 2.995258 GTTACGACAAATTAGCCGTCCA 59.005 45.455 0.00 0.00 36.58 4.02
449 453 3.698040 GTCCAGTCTTAGATACCCGAACA 59.302 47.826 0.00 0.00 0.00 3.18
580 584 7.808672 TGCTCCAGATTTGCAAATTTAAATTG 58.191 30.769 24.81 15.20 33.48 2.32
583 587 9.211485 CTCCAGATTTGCAAATTTAAATTGAGT 57.789 29.630 24.81 0.00 0.00 3.41
743 750 7.816995 TGTAAAATAATGCTTGTTTGATGACCC 59.183 33.333 0.00 0.00 0.00 4.46
747 754 2.942804 TGCTTGTTTGATGACCCAGAA 58.057 42.857 0.00 0.00 0.00 3.02
786 793 7.444183 TCCCTTCAATCCATAATAATTGACGTC 59.556 37.037 9.11 9.11 40.58 4.34
822 829 6.073548 CCTTCGTCTGCAAATATCCATTACTC 60.074 42.308 0.00 0.00 0.00 2.59
862 919 7.043854 CGGACCAATGTACTGTATAAAGTTACG 60.044 40.741 0.00 0.00 0.00 3.18
876 933 3.439857 AGTTACGTGGTGGGAGTAGTA 57.560 47.619 0.00 0.00 0.00 1.82
1002 1242 1.002134 CTTGCCACCACGGATCCTT 60.002 57.895 10.75 0.00 36.56 3.36
1021 1261 2.356665 TTACTCCACCAAGCAAGCAA 57.643 45.000 0.00 0.00 0.00 3.91
1109 1349 0.041312 CGGCCGCCATTATTTTCTCG 60.041 55.000 14.67 0.00 0.00 4.04
1143 1383 0.914644 AAGATTGCCCAGCTCAGCTA 59.085 50.000 0.00 0.00 36.40 3.32
1372 1635 0.750546 CCCGCTTTAAACTAGCCCCC 60.751 60.000 0.00 0.00 35.18 5.40
1411 1674 1.703014 GCATCTCCTGCCATCCTCCA 61.703 60.000 0.00 0.00 45.66 3.86
1445 1708 2.685202 AGGAAGTCCTCCCCTTTCG 58.315 57.895 0.00 0.00 44.77 3.46
1512 1778 1.207329 GCCTGGTAAGATCCGACTTGT 59.793 52.381 0.00 0.00 0.00 3.16
1531 1797 5.533903 ACTTGTTTTGTCAGATTCTGCAGAT 59.466 36.000 19.04 7.83 0.00 2.90
1540 1806 4.024438 CAGATTCTGCAGATAAAAACGCG 58.976 43.478 19.04 3.53 0.00 6.01
1547 1813 3.002862 TGCAGATAAAAACGCGTTCTTGT 59.997 39.130 26.77 16.72 0.00 3.16
1560 1826 1.683385 GTTCTTGTGGCTCCAGCTTTT 59.317 47.619 0.00 0.00 41.70 2.27
1734 2003 2.840066 CGGGTGTTTGCAGCGGAAA 61.840 57.895 0.00 0.00 43.27 3.13
1785 2055 0.253347 AGATTTGGAGAGCTGGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
2011 2281 3.585862 GTTTCAGATTGCCGTCTCACTA 58.414 45.455 0.00 0.00 0.00 2.74
2014 2284 3.617284 TCAGATTGCCGTCTCACTACTA 58.383 45.455 0.00 0.00 0.00 1.82
2107 2383 2.159099 TGGTAGACTGATTCGATGTGCC 60.159 50.000 0.00 0.00 0.00 5.01
2135 2411 7.559335 TTAGCTTCATAGGATGTCCACATAT 57.441 36.000 0.00 0.00 36.57 1.78
2227 2505 8.538409 ACAATTTTGAAACATAGGCTTTGATC 57.462 30.769 12.05 9.58 0.00 2.92
2380 2659 5.290386 AGTAGCAAACAGTCTAGTGTTGAC 58.710 41.667 4.02 0.60 39.82 3.18
2532 2811 7.545615 GGGAATTTATTTGAAGGCAGTAAAGTG 59.454 37.037 0.00 0.00 0.00 3.16
2541 2820 1.923227 GCAGTAAAGTGGCTTCCCGC 61.923 60.000 0.00 0.00 42.11 6.13
2606 2885 8.967218 CCAGTGTATGTTGTTGATTTAAAACTG 58.033 33.333 0.00 0.00 0.00 3.16
2877 3156 3.530265 AATTTCATACGCGGGTACTGA 57.470 42.857 15.17 15.43 36.31 3.41
2929 3212 2.851263 TTGGTGATGACAGTGGTACC 57.149 50.000 4.43 4.43 0.00 3.34
3442 3725 2.112815 GGCGCGCCCTGTTAATCTT 61.113 57.895 39.89 0.00 0.00 2.40
3494 3777 1.005394 GTTCGCTTTCTCCCGGTCA 60.005 57.895 0.00 0.00 0.00 4.02
3495 3778 0.601841 GTTCGCTTTCTCCCGGTCAA 60.602 55.000 0.00 0.00 0.00 3.18
3585 3868 7.187824 TCCTGTCCATATAGATAAAGCATCC 57.812 40.000 0.00 0.00 33.75 3.51
3716 4003 5.770162 GGCCAAAGTGAGCTGGTATTATTAT 59.230 40.000 0.00 0.00 34.97 1.28
3717 4004 6.265422 GGCCAAAGTGAGCTGGTATTATTATT 59.735 38.462 0.00 0.00 34.97 1.40
3719 4006 8.507249 GCCAAAGTGAGCTGGTATTATTATTAG 58.493 37.037 0.00 0.00 34.97 1.73
3720 4007 8.507249 CCAAAGTGAGCTGGTATTATTATTAGC 58.493 37.037 0.00 0.00 0.00 3.09
3721 4008 9.056005 CAAAGTGAGCTGGTATTATTATTAGCA 57.944 33.333 0.00 0.00 33.81 3.49
3722 4009 9.799106 AAAGTGAGCTGGTATTATTATTAGCAT 57.201 29.630 0.00 0.00 33.81 3.79
3723 4010 9.442047 AAGTGAGCTGGTATTATTATTAGCATC 57.558 33.333 0.00 0.00 33.81 3.91
3742 4029 6.002082 AGCATCACATACATTATGCATCAGT 58.998 36.000 0.19 2.92 45.62 3.41
3743 4030 6.072673 AGCATCACATACATTATGCATCAGTG 60.073 38.462 0.19 3.24 45.62 3.66
3744 4031 6.293790 GCATCACATACATTATGCATCAGTGT 60.294 38.462 0.19 9.52 43.30 3.55
3745 4032 6.607735 TCACATACATTATGCATCAGTGTG 57.392 37.500 17.07 16.54 39.79 3.82
3746 4033 6.114767 TCACATACATTATGCATCAGTGTGT 58.885 36.000 16.97 16.97 39.79 3.72
3999 4286 1.882623 GCAGAGAACCCACAGGAAAAG 59.117 52.381 0.00 0.00 36.73 2.27
4184 4554 5.982890 ATAACAAATCTGGTTCCCTGTTG 57.017 39.130 0.64 0.00 0.00 3.33
4267 4644 2.035193 TCTGGAGTCTTGCTATCGATGC 59.965 50.000 8.54 10.32 0.00 3.91
4388 4768 1.530323 AAAACACGTAGATGTGCCCC 58.470 50.000 1.71 0.00 43.74 5.80
4418 4798 3.446873 TCTTGTGCCAAAACTGTGATTGT 59.553 39.130 6.03 0.00 0.00 2.71
4499 4879 5.966742 ATGGTTCCTGCTTTCTAAAGAAC 57.033 39.130 6.64 2.49 38.28 3.01
4505 4885 4.137543 CCTGCTTTCTAAAGAACCTGTGT 58.862 43.478 6.64 0.00 38.28 3.72
4530 4910 9.472361 GTAAGTTAACACACTAGAATTCAGTGA 57.528 33.333 29.00 14.31 45.10 3.41
4533 4913 9.640963 AGTTAACACACTAGAATTCAGTGATAC 57.359 33.333 29.00 20.88 45.10 2.24
4534 4914 9.640963 GTTAACACACTAGAATTCAGTGATACT 57.359 33.333 29.00 18.34 45.10 2.12
4535 4915 9.856488 TTAACACACTAGAATTCAGTGATACTC 57.144 33.333 29.00 0.00 45.10 2.59
4536 4916 6.868622 ACACACTAGAATTCAGTGATACTCC 58.131 40.000 29.00 0.00 45.10 3.85
4537 4917 6.127310 ACACACTAGAATTCAGTGATACTCCC 60.127 42.308 29.00 0.00 45.10 4.30
4538 4918 6.097554 CACACTAGAATTCAGTGATACTCCCT 59.902 42.308 29.00 12.62 45.10 4.20
4539 4919 6.322712 ACACTAGAATTCAGTGATACTCCCTC 59.677 42.308 29.00 0.00 45.10 4.30
4540 4920 5.836358 ACTAGAATTCAGTGATACTCCCTCC 59.164 44.000 8.44 0.00 0.00 4.30
4541 4921 3.639094 AGAATTCAGTGATACTCCCTCCG 59.361 47.826 8.44 0.00 0.00 4.63
4542 4922 2.526888 TTCAGTGATACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
4543 4923 2.054232 TCAGTGATACTCCCTCCGTC 57.946 55.000 0.00 0.00 0.00 4.79
4544 4924 1.564818 TCAGTGATACTCCCTCCGTCT 59.435 52.381 0.00 0.00 0.00 4.18
4545 4925 1.950909 CAGTGATACTCCCTCCGTCTC 59.049 57.143 0.00 0.00 0.00 3.36
4546 4926 1.564818 AGTGATACTCCCTCCGTCTCA 59.435 52.381 0.00 0.00 0.00 3.27
4547 4927 2.025226 AGTGATACTCCCTCCGTCTCAA 60.025 50.000 0.00 0.00 0.00 3.02
4548 4928 2.758979 GTGATACTCCCTCCGTCTCAAA 59.241 50.000 0.00 0.00 0.00 2.69
4549 4929 3.194968 GTGATACTCCCTCCGTCTCAAAA 59.805 47.826 0.00 0.00 0.00 2.44
4550 4930 4.030913 TGATACTCCCTCCGTCTCAAAAT 58.969 43.478 0.00 0.00 0.00 1.82
4551 4931 5.068723 GTGATACTCCCTCCGTCTCAAAATA 59.931 44.000 0.00 0.00 0.00 1.40
4552 4932 5.659525 TGATACTCCCTCCGTCTCAAAATAA 59.340 40.000 0.00 0.00 0.00 1.40
4553 4933 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
4554 4934 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
4555 4935 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
4556 4936 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
4557 4937 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
4558 4938 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
4559 4939 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
4560 4940 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
4561 4941 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
4562 4942 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
4563 4943 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
4564 4944 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
4565 4945 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
4566 4946 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
4567 4947 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
4568 4948 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
4569 4949 9.651718 CTCAAAATAAGTGTCTCAACTTTGTAC 57.348 33.333 0.00 0.00 40.77 2.90
4570 4950 9.391006 TCAAAATAAGTGTCTCAACTTTGTACT 57.609 29.630 0.00 0.00 40.77 2.73
4573 4953 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
4574 4954 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
4575 4955 6.163135 AGTGTCTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
4576 4956 6.583562 AGTGTCTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
4577 4957 7.723324 AGTGTCTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
4578 4958 7.868415 AGTGTCTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
4579 4959 7.652507 GTGTCTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
4580 4960 8.853126 TGTCTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
4604 4984 8.971321 GTACGAAATTGTACTAAGTTTGAGACA 58.029 33.333 10.44 0.00 41.17 3.41
4605 4985 7.848491 ACGAAATTGTACTAAGTTTGAGACAC 58.152 34.615 10.44 0.00 0.00 3.67
4606 4986 7.709613 ACGAAATTGTACTAAGTTTGAGACACT 59.290 33.333 10.44 0.00 0.00 3.55
4607 4987 8.548721 CGAAATTGTACTAAGTTTGAGACACTT 58.451 33.333 0.00 0.00 38.13 3.16
4616 4996 9.832445 ACTAAGTTTGAGACACTTATTTTGAGA 57.168 29.630 0.00 0.00 36.39 3.27
4618 4998 7.178712 AGTTTGAGACACTTATTTTGAGACG 57.821 36.000 0.00 0.00 0.00 4.18
4619 4999 6.984474 AGTTTGAGACACTTATTTTGAGACGA 59.016 34.615 0.00 0.00 0.00 4.20
4620 5000 7.494625 AGTTTGAGACACTTATTTTGAGACGAA 59.505 33.333 0.00 0.00 0.00 3.85
4621 5001 7.408132 TTGAGACACTTATTTTGAGACGAAG 57.592 36.000 0.00 0.00 0.00 3.79
4622 5002 6.745116 TGAGACACTTATTTTGAGACGAAGA 58.255 36.000 0.00 0.00 0.00 2.87
4623 5003 6.863645 TGAGACACTTATTTTGAGACGAAGAG 59.136 38.462 0.00 0.00 0.00 2.85
4624 5004 6.982852 AGACACTTATTTTGAGACGAAGAGA 58.017 36.000 0.00 0.00 0.00 3.10
4625 5005 7.087639 AGACACTTATTTTGAGACGAAGAGAG 58.912 38.462 0.00 0.00 0.00 3.20
4626 5006 6.750148 ACACTTATTTTGAGACGAAGAGAGT 58.250 36.000 0.00 0.00 0.00 3.24
4627 5007 7.883217 ACACTTATTTTGAGACGAAGAGAGTA 58.117 34.615 0.00 0.00 0.00 2.59
4628 5008 7.808856 ACACTTATTTTGAGACGAAGAGAGTAC 59.191 37.037 0.00 0.00 0.00 2.73
4629 5009 8.024285 CACTTATTTTGAGACGAAGAGAGTACT 58.976 37.037 0.00 0.00 0.00 2.73
4630 5010 9.228949 ACTTATTTTGAGACGAAGAGAGTACTA 57.771 33.333 0.00 0.00 0.00 1.82
4631 5011 9.710979 CTTATTTTGAGACGAAGAGAGTACTAG 57.289 37.037 0.00 0.00 0.00 2.57
4632 5012 7.690952 ATTTTGAGACGAAGAGAGTACTAGT 57.309 36.000 0.00 0.00 0.00 2.57
4633 5013 7.507733 TTTTGAGACGAAGAGAGTACTAGTT 57.492 36.000 0.00 0.00 0.00 2.24
4634 5014 6.483385 TTGAGACGAAGAGAGTACTAGTTG 57.517 41.667 0.00 0.00 0.00 3.16
4635 5015 5.549347 TGAGACGAAGAGAGTACTAGTTGT 58.451 41.667 0.00 0.00 0.00 3.32
4636 5016 6.695429 TGAGACGAAGAGAGTACTAGTTGTA 58.305 40.000 0.00 0.00 0.00 2.41
4637 5017 7.329499 TGAGACGAAGAGAGTACTAGTTGTAT 58.671 38.462 0.00 0.00 33.23 2.29
4638 5018 7.823310 TGAGACGAAGAGAGTACTAGTTGTATT 59.177 37.037 0.00 0.00 33.23 1.89
4639 5019 8.564509 AGACGAAGAGAGTACTAGTTGTATTT 57.435 34.615 0.00 0.00 33.23 1.40
4640 5020 8.452534 AGACGAAGAGAGTACTAGTTGTATTTG 58.547 37.037 0.00 0.00 33.23 2.32
4641 5021 7.536855 ACGAAGAGAGTACTAGTTGTATTTGG 58.463 38.462 0.00 0.00 33.23 3.28
4642 5022 6.472808 CGAAGAGAGTACTAGTTGTATTTGGC 59.527 42.308 0.00 0.00 33.23 4.52
4643 5023 7.483580 AAGAGAGTACTAGTTGTATTTGGCT 57.516 36.000 0.00 0.00 33.23 4.75
4644 5024 8.591114 AAGAGAGTACTAGTTGTATTTGGCTA 57.409 34.615 0.00 0.00 33.23 3.93
4645 5025 8.591114 AGAGAGTACTAGTTGTATTTGGCTAA 57.409 34.615 0.00 0.00 33.23 3.09
4646 5026 8.468399 AGAGAGTACTAGTTGTATTTGGCTAAC 58.532 37.037 0.00 0.00 33.23 2.34
4647 5027 8.130671 AGAGTACTAGTTGTATTTGGCTAACA 57.869 34.615 0.00 0.00 33.23 2.41
4648 5028 8.759782 AGAGTACTAGTTGTATTTGGCTAACAT 58.240 33.333 0.00 0.00 33.23 2.71
4649 5029 9.379791 GAGTACTAGTTGTATTTGGCTAACATT 57.620 33.333 0.00 0.00 33.23 2.71
4650 5030 9.734984 AGTACTAGTTGTATTTGGCTAACATTT 57.265 29.630 0.00 0.00 33.23 2.32
4674 5054 6.875948 TTTTAAGAGCTGTGCTGATTAACA 57.124 33.333 0.00 0.00 39.88 2.41
4675 5055 6.875948 TTTAAGAGCTGTGCTGATTAACAA 57.124 33.333 0.00 0.00 39.88 2.83
4676 5056 6.875948 TTAAGAGCTGTGCTGATTAACAAA 57.124 33.333 0.00 0.00 39.88 2.83
4677 5057 5.772825 AAGAGCTGTGCTGATTAACAAAA 57.227 34.783 0.00 0.00 39.88 2.44
4678 5058 5.772825 AGAGCTGTGCTGATTAACAAAAA 57.227 34.783 0.00 0.00 39.88 1.94
4679 5059 5.766222 AGAGCTGTGCTGATTAACAAAAAG 58.234 37.500 0.00 0.00 39.88 2.27
4680 5060 5.532406 AGAGCTGTGCTGATTAACAAAAAGA 59.468 36.000 0.00 0.00 39.88 2.52
4681 5061 6.208204 AGAGCTGTGCTGATTAACAAAAAGAT 59.792 34.615 0.00 0.00 39.88 2.40
4682 5062 7.391554 AGAGCTGTGCTGATTAACAAAAAGATA 59.608 33.333 0.00 0.00 39.88 1.98
4683 5063 7.533426 AGCTGTGCTGATTAACAAAAAGATAG 58.467 34.615 0.00 0.00 37.57 2.08
4684 5064 7.391554 AGCTGTGCTGATTAACAAAAAGATAGA 59.608 33.333 0.00 0.00 37.57 1.98
4685 5065 8.186821 GCTGTGCTGATTAACAAAAAGATAGAT 58.813 33.333 0.00 0.00 0.00 1.98
4695 5075 9.834628 TTAACAAAAAGATAGATTTTAGCGTGG 57.165 29.630 0.00 0.00 32.20 4.94
4696 5076 7.681939 ACAAAAAGATAGATTTTAGCGTGGA 57.318 32.000 0.00 0.00 32.20 4.02
4697 5077 8.106247 ACAAAAAGATAGATTTTAGCGTGGAA 57.894 30.769 0.00 0.00 32.20 3.53
4698 5078 8.237267 ACAAAAAGATAGATTTTAGCGTGGAAG 58.763 33.333 0.00 0.00 32.20 3.46
4699 5079 8.450964 CAAAAAGATAGATTTTAGCGTGGAAGA 58.549 33.333 0.00 0.00 32.20 2.87
4700 5080 7.778470 AAAGATAGATTTTAGCGTGGAAGAG 57.222 36.000 0.00 0.00 0.00 2.85
4701 5081 6.716934 AGATAGATTTTAGCGTGGAAGAGA 57.283 37.500 0.00 0.00 0.00 3.10
4702 5082 7.296628 AGATAGATTTTAGCGTGGAAGAGAT 57.703 36.000 0.00 0.00 0.00 2.75
4703 5083 7.151308 AGATAGATTTTAGCGTGGAAGAGATG 58.849 38.462 0.00 0.00 0.00 2.90
4704 5084 5.091261 AGATTTTAGCGTGGAAGAGATGT 57.909 39.130 0.00 0.00 0.00 3.06
4705 5085 5.112686 AGATTTTAGCGTGGAAGAGATGTC 58.887 41.667 0.00 0.00 0.00 3.06
4706 5086 4.537135 TTTTAGCGTGGAAGAGATGTCT 57.463 40.909 0.00 0.00 32.81 3.41
4707 5087 3.784701 TTAGCGTGGAAGAGATGTCTC 57.215 47.619 1.75 1.75 43.17 3.36
4708 5088 0.820871 AGCGTGGAAGAGATGTCTCC 59.179 55.000 6.41 0.00 43.88 3.71
4709 5089 0.820871 GCGTGGAAGAGATGTCTCCT 59.179 55.000 6.41 0.00 43.88 3.69
4710 5090 1.202359 GCGTGGAAGAGATGTCTCCTC 60.202 57.143 6.41 3.50 43.88 3.71
4713 5093 1.036707 GGAAGAGATGTCTCCTCCGG 58.963 60.000 10.96 0.00 42.01 5.14
4714 5094 0.387565 GAAGAGATGTCTCCTCCGGC 59.612 60.000 0.00 0.00 43.88 6.13
4715 5095 0.032615 AAGAGATGTCTCCTCCGGCT 60.033 55.000 0.00 0.00 43.88 5.52
4716 5096 0.467290 AGAGATGTCTCCTCCGGCTC 60.467 60.000 0.00 0.00 43.88 4.70
4717 5097 0.467290 GAGATGTCTCCTCCGGCTCT 60.467 60.000 0.00 0.00 37.02 4.09
4718 5098 0.847373 AGATGTCTCCTCCGGCTCTA 59.153 55.000 0.00 0.00 0.00 2.43
4719 5099 0.955905 GATGTCTCCTCCGGCTCTAC 59.044 60.000 0.00 0.00 0.00 2.59
4720 5100 0.259065 ATGTCTCCTCCGGCTCTACA 59.741 55.000 0.00 0.00 0.00 2.74
4721 5101 0.039180 TGTCTCCTCCGGCTCTACAA 59.961 55.000 0.00 0.00 0.00 2.41
4722 5102 0.741915 GTCTCCTCCGGCTCTACAAG 59.258 60.000 0.00 0.00 0.00 3.16
4723 5103 0.395862 TCTCCTCCGGCTCTACAAGG 60.396 60.000 0.00 0.00 0.00 3.61
4724 5104 0.684805 CTCCTCCGGCTCTACAAGGT 60.685 60.000 0.00 0.00 0.00 3.50
4725 5105 0.627451 TCCTCCGGCTCTACAAGGTA 59.373 55.000 0.00 0.00 0.00 3.08
4726 5106 1.006281 TCCTCCGGCTCTACAAGGTAA 59.994 52.381 0.00 0.00 0.00 2.85
4727 5107 1.409427 CCTCCGGCTCTACAAGGTAAG 59.591 57.143 0.00 0.00 0.00 2.34
4728 5108 2.376109 CTCCGGCTCTACAAGGTAAGA 58.624 52.381 0.00 0.00 0.00 2.10
4729 5109 2.359531 CTCCGGCTCTACAAGGTAAGAG 59.640 54.545 0.00 0.00 41.82 2.85
4736 5116 5.140747 CTCTACAAGGTAAGAGCAACACT 57.859 43.478 0.00 0.00 33.36 3.55
4737 5117 6.268825 CTCTACAAGGTAAGAGCAACACTA 57.731 41.667 0.00 0.00 33.36 2.74
4738 5118 6.268825 TCTACAAGGTAAGAGCAACACTAG 57.731 41.667 0.00 0.00 0.00 2.57
4739 5119 3.665190 ACAAGGTAAGAGCAACACTAGC 58.335 45.455 0.00 0.00 0.00 3.42
4740 5120 2.656560 AGGTAAGAGCAACACTAGCG 57.343 50.000 0.00 0.00 37.01 4.26
4741 5121 1.204941 AGGTAAGAGCAACACTAGCGG 59.795 52.381 0.00 0.00 37.01 5.52
4742 5122 1.641577 GTAAGAGCAACACTAGCGGG 58.358 55.000 0.00 0.00 37.01 6.13
4743 5123 1.067071 GTAAGAGCAACACTAGCGGGT 60.067 52.381 0.00 0.00 37.01 5.28
4744 5124 0.396811 AAGAGCAACACTAGCGGGTT 59.603 50.000 0.00 0.00 37.01 4.11
4745 5125 0.396811 AGAGCAACACTAGCGGGTTT 59.603 50.000 0.00 0.00 37.01 3.27
4746 5126 1.202770 AGAGCAACACTAGCGGGTTTT 60.203 47.619 0.00 0.00 37.01 2.43
4747 5127 2.038033 AGAGCAACACTAGCGGGTTTTA 59.962 45.455 0.00 0.00 37.01 1.52
4748 5128 2.809696 GAGCAACACTAGCGGGTTTTAA 59.190 45.455 0.00 0.00 37.01 1.52
4749 5129 2.812011 AGCAACACTAGCGGGTTTTAAG 59.188 45.455 0.00 0.00 37.01 1.85
4750 5130 2.809696 GCAACACTAGCGGGTTTTAAGA 59.190 45.455 0.00 0.00 0.00 2.10
4751 5131 3.120304 GCAACACTAGCGGGTTTTAAGAG 60.120 47.826 0.00 0.00 0.00 2.85
4752 5132 3.329929 ACACTAGCGGGTTTTAAGAGG 57.670 47.619 0.00 0.00 0.00 3.69
4753 5133 2.901839 ACACTAGCGGGTTTTAAGAGGA 59.098 45.455 0.00 0.00 0.00 3.71
4754 5134 3.259902 CACTAGCGGGTTTTAAGAGGAC 58.740 50.000 0.00 0.00 0.00 3.85
4755 5135 2.901839 ACTAGCGGGTTTTAAGAGGACA 59.098 45.455 0.00 0.00 0.00 4.02
4756 5136 2.474410 AGCGGGTTTTAAGAGGACAG 57.526 50.000 0.00 0.00 0.00 3.51
4757 5137 1.697982 AGCGGGTTTTAAGAGGACAGT 59.302 47.619 0.00 0.00 0.00 3.55
4758 5138 2.074576 GCGGGTTTTAAGAGGACAGTC 58.925 52.381 0.00 0.00 0.00 3.51
4759 5139 2.289506 GCGGGTTTTAAGAGGACAGTCT 60.290 50.000 0.00 0.00 0.00 3.24
4760 5140 3.806157 GCGGGTTTTAAGAGGACAGTCTT 60.806 47.826 0.00 0.00 40.07 3.01
4761 5141 4.386711 CGGGTTTTAAGAGGACAGTCTTT 58.613 43.478 0.00 0.00 37.89 2.52
4762 5142 4.451435 CGGGTTTTAAGAGGACAGTCTTTC 59.549 45.833 0.00 0.00 37.89 2.62
4763 5143 5.622180 GGGTTTTAAGAGGACAGTCTTTCT 58.378 41.667 0.00 1.61 37.89 2.52
4764 5144 6.517864 CGGGTTTTAAGAGGACAGTCTTTCTA 60.518 42.308 0.00 0.00 37.89 2.10
4765 5145 7.222161 GGGTTTTAAGAGGACAGTCTTTCTAA 58.778 38.462 0.00 0.00 37.89 2.10
4766 5146 7.883833 GGGTTTTAAGAGGACAGTCTTTCTAAT 59.116 37.037 0.00 0.00 37.89 1.73
4767 5147 8.722394 GGTTTTAAGAGGACAGTCTTTCTAATG 58.278 37.037 0.00 0.00 37.89 1.90
4768 5148 8.722394 GTTTTAAGAGGACAGTCTTTCTAATGG 58.278 37.037 0.00 0.00 37.89 3.16
4769 5149 7.554959 TTAAGAGGACAGTCTTTCTAATGGT 57.445 36.000 0.00 0.00 37.89 3.55
4770 5150 6.441088 AAGAGGACAGTCTTTCTAATGGTT 57.559 37.500 0.00 0.00 32.59 3.67
4771 5151 6.441088 AGAGGACAGTCTTTCTAATGGTTT 57.559 37.500 0.00 0.00 0.00 3.27
4772 5152 7.554959 AGAGGACAGTCTTTCTAATGGTTTA 57.445 36.000 0.00 0.00 0.00 2.01
4773 5153 7.616313 AGAGGACAGTCTTTCTAATGGTTTAG 58.384 38.462 0.00 0.00 36.87 1.85
4774 5154 7.455008 AGAGGACAGTCTTTCTAATGGTTTAGA 59.545 37.037 0.00 0.00 41.61 2.10
4775 5155 7.616313 AGGACAGTCTTTCTAATGGTTTAGAG 58.384 38.462 0.00 0.00 43.53 2.43
4776 5156 6.819146 GGACAGTCTTTCTAATGGTTTAGAGG 59.181 42.308 0.00 0.00 43.53 3.69
4777 5157 6.712276 ACAGTCTTTCTAATGGTTTAGAGGG 58.288 40.000 0.00 0.00 43.53 4.30
4778 5158 5.586643 CAGTCTTTCTAATGGTTTAGAGGGC 59.413 44.000 0.00 0.00 43.53 5.19
4779 5159 4.882427 GTCTTTCTAATGGTTTAGAGGGCC 59.118 45.833 0.00 0.00 43.53 5.80
4780 5160 4.788617 TCTTTCTAATGGTTTAGAGGGCCT 59.211 41.667 5.25 5.25 43.53 5.19
4781 5161 5.253096 TCTTTCTAATGGTTTAGAGGGCCTT 59.747 40.000 7.89 0.00 43.53 4.35
4782 5162 4.772886 TCTAATGGTTTAGAGGGCCTTC 57.227 45.455 7.89 6.80 39.09 3.46
4783 5163 4.371681 TCTAATGGTTTAGAGGGCCTTCT 58.628 43.478 22.43 22.43 39.09 2.85
4784 5164 5.535029 TCTAATGGTTTAGAGGGCCTTCTA 58.465 41.667 20.11 20.11 39.09 2.10
4785 5165 5.968167 TCTAATGGTTTAGAGGGCCTTCTAA 59.032 40.000 28.39 28.39 39.09 2.10
4786 5166 5.530176 AATGGTTTAGAGGGCCTTCTAAA 57.470 39.130 34.41 34.41 43.68 1.85
4787 5167 5.530176 ATGGTTTAGAGGGCCTTCTAAAA 57.470 39.130 37.59 28.20 45.92 1.52
4789 5169 4.919793 GGTTTAGAGGGCCTTCTAAAACT 58.080 43.478 38.84 15.61 46.53 2.66
4790 5170 5.322754 GGTTTAGAGGGCCTTCTAAAACTT 58.677 41.667 38.84 14.97 46.53 2.66
4791 5171 5.773680 GGTTTAGAGGGCCTTCTAAAACTTT 59.226 40.000 38.84 14.33 46.53 2.66
4792 5172 6.267014 GGTTTAGAGGGCCTTCTAAAACTTTT 59.733 38.462 38.84 13.71 46.53 2.27
4793 5173 7.201974 GGTTTAGAGGGCCTTCTAAAACTTTTT 60.202 37.037 38.84 13.07 46.53 1.94
4794 5174 8.853126 GTTTAGAGGGCCTTCTAAAACTTTTTA 58.147 33.333 37.59 19.98 45.92 1.52
4795 5175 8.631480 TTAGAGGGCCTTCTAAAACTTTTTAG 57.369 34.615 29.55 13.24 46.84 1.85
4813 5193 9.746457 ACTTTTTAGATCCTTTAGAGCAATTCT 57.254 29.630 0.00 0.00 40.06 2.40
4832 5212 9.593134 GCAATTCTAATAGAGTAGTCATATGGG 57.407 37.037 2.13 0.00 0.00 4.00
4833 5213 9.593134 CAATTCTAATAGAGTAGTCATATGGGC 57.407 37.037 2.13 0.00 0.00 5.36
4834 5214 7.719871 TTCTAATAGAGTAGTCATATGGGCC 57.280 40.000 2.13 0.00 0.00 5.80
4835 5215 6.195700 TCTAATAGAGTAGTCATATGGGCCC 58.804 44.000 17.59 17.59 0.00 5.80
4836 5216 1.633774 AGAGTAGTCATATGGGCCCG 58.366 55.000 19.37 1.86 0.00 6.13
4837 5217 1.147191 AGAGTAGTCATATGGGCCCGA 59.853 52.381 19.37 8.23 0.00 5.14
4838 5218 2.180276 GAGTAGTCATATGGGCCCGAT 58.820 52.381 19.37 14.37 0.00 4.18
4839 5219 2.166664 GAGTAGTCATATGGGCCCGATC 59.833 54.545 19.37 4.17 0.00 3.69
4840 5220 1.135083 GTAGTCATATGGGCCCGATCG 60.135 57.143 19.37 8.51 0.00 3.69
4841 5221 1.079127 GTCATATGGGCCCGATCGG 60.079 63.158 27.65 27.65 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.482627 TTTTGCGGTTCATATTTTGTATTCTTT 57.517 25.926 0.00 0.00 0.00 2.52
16 17 9.139174 CTTTTTGCGGTTCATATTTTGTATTCT 57.861 29.630 0.00 0.00 0.00 2.40
17 18 9.134734 TCTTTTTGCGGTTCATATTTTGTATTC 57.865 29.630 0.00 0.00 0.00 1.75
188 190 4.519350 TGGCAATCGTACAACCATTAAACA 59.481 37.500 0.00 0.00 0.00 2.83
241 243 1.599542 GATCGATTTAGTGTGCCCTGC 59.400 52.381 0.00 0.00 0.00 4.85
282 284 2.913060 ATACCGCTCCCGCTCTCC 60.913 66.667 0.00 0.00 0.00 3.71
396 400 0.108329 CGTAACCAGGGAGCGAACAT 60.108 55.000 0.00 0.00 0.00 2.71
399 403 1.180456 TGTCGTAACCAGGGAGCGAA 61.180 55.000 3.56 0.00 33.30 4.70
407 411 2.997986 ACGGCTAATTTGTCGTAACCAG 59.002 45.455 17.60 0.00 46.85 4.00
431 435 4.161754 CCCTTTGTTCGGGTATCTAAGACT 59.838 45.833 0.00 0.00 36.91 3.24
538 542 4.009675 GGAGCAACCAGATTTGTATGTCA 58.990 43.478 0.00 0.00 38.79 3.58
580 584 9.168451 TCGGATCTAATATAATCACTCAGACTC 57.832 37.037 0.00 0.00 0.00 3.36
736 743 3.600388 ACATCGAGTTTTCTGGGTCATC 58.400 45.455 0.00 0.00 0.00 2.92
743 750 5.874810 TGAAGGGAATACATCGAGTTTTCTG 59.125 40.000 13.42 0.57 38.01 3.02
747 754 5.823045 GGATTGAAGGGAATACATCGAGTTT 59.177 40.000 0.00 0.00 0.00 2.66
786 793 3.114065 GCAGACGAAGGGAGTATAAACG 58.886 50.000 0.00 0.00 0.00 3.60
822 829 3.738830 TGGTCCGGAAATACTTATCGG 57.261 47.619 5.23 0.00 41.80 4.18
1002 1242 2.229792 CTTGCTTGCTTGGTGGAGTAA 58.770 47.619 0.00 0.00 0.00 2.24
1109 1349 3.428452 GCAATCTTTTAACCCTAACGCCC 60.428 47.826 0.00 0.00 0.00 6.13
1143 1383 3.374402 CTGACTGACGGAGGCGGT 61.374 66.667 0.00 0.00 30.12 5.68
1394 1657 1.138568 CTTGGAGGATGGCAGGAGAT 58.861 55.000 0.00 0.00 0.00 2.75
1404 1667 2.614969 TGCCCCTGCTTGGAGGAT 60.615 61.111 9.82 0.00 38.35 3.24
1411 1674 4.711949 CTCGTGCTGCCCCTGCTT 62.712 66.667 0.00 0.00 38.71 3.91
1439 1702 3.423154 GTGGCAGCGGACGAAAGG 61.423 66.667 0.00 0.00 0.00 3.11
1441 1704 2.110213 AAGTGGCAGCGGACGAAA 59.890 55.556 0.00 0.00 0.00 3.46
1442 1705 2.664851 CAAGTGGCAGCGGACGAA 60.665 61.111 0.00 0.00 0.00 3.85
1443 1706 4.680237 CCAAGTGGCAGCGGACGA 62.680 66.667 0.00 0.00 0.00 4.20
1444 1707 4.680237 TCCAAGTGGCAGCGGACG 62.680 66.667 0.00 0.00 34.44 4.79
1445 1708 3.050275 GTCCAAGTGGCAGCGGAC 61.050 66.667 12.57 12.57 41.08 4.79
1512 1778 7.591057 CGTTTTTATCTGCAGAATCTGACAAAA 59.409 33.333 22.50 13.85 32.44 2.44
1531 1797 1.671845 AGCCACAAGAACGCGTTTTTA 59.328 42.857 27.32 0.00 0.00 1.52
1540 1806 1.322442 AAAGCTGGAGCCACAAGAAC 58.678 50.000 0.00 0.00 43.38 3.01
1547 1813 0.889186 GTTCCGAAAAGCTGGAGCCA 60.889 55.000 0.00 0.00 43.38 4.75
1560 1826 2.682136 TCCTGGATGCGGTTCCGA 60.682 61.111 15.69 0.92 38.74 4.55
1734 2003 1.882352 GCCCGTCCACTGTTTGAATCT 60.882 52.381 0.00 0.00 0.00 2.40
1785 2055 2.697147 AAACGCCATCCCTGTGTGCT 62.697 55.000 0.00 0.00 0.00 4.40
1792 2062 4.344865 ACCGCAAACGCCATCCCT 62.345 61.111 0.00 0.00 38.22 4.20
1930 2200 1.266175 GAGACGACGTTCTTCACCTCA 59.734 52.381 0.13 0.00 0.00 3.86
2011 2281 7.123847 AGAGGATTATTTACCGTGAACAGTAGT 59.876 37.037 0.00 0.00 0.00 2.73
2014 2284 6.295719 AGAGGATTATTTACCGTGAACAGT 57.704 37.500 0.00 0.00 0.00 3.55
2107 2383 4.058817 GGACATCCTATGAAGCTAAACCG 58.941 47.826 0.00 0.00 0.00 4.44
2135 2411 9.225682 AGATCAATAATCTTTCTAACCACCCTA 57.774 33.333 0.00 0.00 42.30 3.53
2227 2505 7.019774 TCATTCAGAAACTGTCAAAGACTTG 57.980 36.000 0.00 0.00 33.15 3.16
2266 2544 9.145865 GTTATTTTCAACAGAAAGGTTTGAACA 57.854 29.630 0.00 0.00 33.20 3.18
2380 2659 7.780064 TCTAAGACTCTCTTTCAATCTCCATG 58.220 38.462 0.00 0.00 37.89 3.66
2532 2811 1.269051 CCAATAAAATCGCGGGAAGCC 60.269 52.381 6.13 0.00 44.76 4.35
2541 2820 9.708222 CAAGATCTACTTCAACCAATAAAATCG 57.292 33.333 0.00 0.00 36.61 3.34
2568 2847 6.038271 ACAACATACACTGGTTTCAAGTCTTC 59.962 38.462 0.00 0.00 0.00 2.87
2606 2885 5.820947 TGACCGGAAAATAAATCTAAGCCTC 59.179 40.000 9.46 0.00 0.00 4.70
2929 3212 1.743252 GGGAGGCTGCTTTCTCACG 60.743 63.158 5.84 0.00 0.00 4.35
3373 3656 1.488812 GTGTATGGCATGTAGGTCCCA 59.511 52.381 10.98 0.00 0.00 4.37
3474 3757 1.004918 ACCGGGAGAAAGCGAACTG 60.005 57.895 6.32 0.00 0.00 3.16
3475 3758 1.292541 GACCGGGAGAAAGCGAACT 59.707 57.895 6.32 0.00 0.00 3.01
3494 3777 0.106918 TTCTTCACCGGGCAAGTGTT 60.107 50.000 6.32 0.00 36.58 3.32
3495 3778 0.110486 ATTCTTCACCGGGCAAGTGT 59.890 50.000 6.32 0.00 36.58 3.55
3585 3868 1.210931 CACAACGGCATTCCAGCAG 59.789 57.895 0.00 0.00 35.83 4.24
3716 4003 7.662669 ACTGATGCATAATGTATGTGATGCTAA 59.337 33.333 0.00 0.00 44.05 3.09
3717 4004 7.118680 CACTGATGCATAATGTATGTGATGCTA 59.881 37.037 0.00 0.00 44.05 3.49
3719 4006 6.084277 CACTGATGCATAATGTATGTGATGC 58.916 40.000 0.00 0.00 44.00 3.91
3720 4007 7.075741 CACACTGATGCATAATGTATGTGATG 58.924 38.462 15.51 5.13 38.43 3.07
3721 4008 6.769341 ACACACTGATGCATAATGTATGTGAT 59.231 34.615 22.45 11.03 38.43 3.06
3722 4009 6.114767 ACACACTGATGCATAATGTATGTGA 58.885 36.000 22.45 0.00 38.43 3.58
3723 4010 6.367686 ACACACTGATGCATAATGTATGTG 57.632 37.500 17.53 17.53 38.43 3.21
3738 4025 2.477176 GGCCAACGCAACACACTGA 61.477 57.895 0.00 0.00 36.38 3.41
3742 4029 2.904866 GAGGGCCAACGCAACACA 60.905 61.111 6.18 0.00 36.38 3.72
3743 4030 2.904866 TGAGGGCCAACGCAACAC 60.905 61.111 6.18 0.00 36.38 3.32
3744 4031 2.904866 GTGAGGGCCAACGCAACA 60.905 61.111 6.18 0.00 36.38 3.33
3745 4032 1.805428 AATGTGAGGGCCAACGCAAC 61.805 55.000 17.80 1.79 36.38 4.17
3746 4033 1.523154 GAATGTGAGGGCCAACGCAA 61.523 55.000 17.80 5.40 36.38 4.85
3946 4233 0.322277 CCTCTGTGTGCTCATGGCTT 60.322 55.000 7.54 0.00 42.39 4.35
3999 4286 1.271379 TGAAGTAGTTTGGAGGCTGCC 60.271 52.381 11.65 11.65 0.00 4.85
4184 4554 3.714391 ACTGAACGGTACACTTGAGAAC 58.286 45.455 0.00 0.00 0.00 3.01
4447 4827 9.838163 CATGCATTGATGTAAATATTTTTCACG 57.162 29.630 5.91 3.75 0.00 4.35
4463 4843 5.424757 CAGGAACCATTTTCATGCATTGAT 58.575 37.500 0.00 0.00 33.34 2.57
4464 4844 4.823157 CAGGAACCATTTTCATGCATTGA 58.177 39.130 0.00 0.00 0.00 2.57
4527 4907 2.054232 TGAGACGGAGGGAGTATCAC 57.946 55.000 0.00 0.00 40.51 3.06
4528 4908 2.820728 TTGAGACGGAGGGAGTATCA 57.179 50.000 0.00 0.00 37.96 2.15
4529 4909 4.674281 ATTTTGAGACGGAGGGAGTATC 57.326 45.455 0.00 0.00 0.00 2.24
4530 4910 5.661759 ACTTATTTTGAGACGGAGGGAGTAT 59.338 40.000 0.00 0.00 0.00 2.12
4531 4911 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
4532 4912 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
4533 4913 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4534 4914 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4535 4915 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4536 4916 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
4537 4917 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
4538 4918 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
4539 4919 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
4540 4920 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
4541 4921 8.398665 ACAAAGTTGAGACACTTATTTTGAGAC 58.601 33.333 0.00 0.00 35.87 3.36
4542 4922 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
4543 4923 9.651718 GTACAAAGTTGAGACACTTATTTTGAG 57.348 33.333 0.00 0.00 35.87 3.02
4544 4924 9.391006 AGTACAAAGTTGAGACACTTATTTTGA 57.609 29.630 0.00 0.00 35.87 2.69
4547 4927 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
4548 4928 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
4549 4929 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
4550 4930 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
4551 4931 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
4552 4932 5.793030 AGCTAGTACAAAGTTGAGACACT 57.207 39.130 0.00 0.00 0.00 3.55
4553 4933 6.846325 AAAGCTAGTACAAAGTTGAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
4554 4934 7.723324 ACTAAAGCTAGTACAAAGTTGAGACA 58.277 34.615 0.00 0.00 36.56 3.41
4578 4958 8.971321 TGTCTCAAACTTAGTACAATTTCGTAC 58.029 33.333 0.00 0.00 41.75 3.67
4579 4959 8.971321 GTGTCTCAAACTTAGTACAATTTCGTA 58.029 33.333 0.00 0.00 0.00 3.43
4580 4960 7.709613 AGTGTCTCAAACTTAGTACAATTTCGT 59.290 33.333 0.00 0.00 0.00 3.85
4581 4961 8.073355 AGTGTCTCAAACTTAGTACAATTTCG 57.927 34.615 0.00 0.00 0.00 3.46
4590 4970 9.832445 TCTCAAAATAAGTGTCTCAAACTTAGT 57.168 29.630 2.85 0.00 41.95 2.24
4592 4972 8.761497 CGTCTCAAAATAAGTGTCTCAAACTTA 58.239 33.333 0.00 0.00 42.63 2.24
4593 4973 7.494625 TCGTCTCAAAATAAGTGTCTCAAACTT 59.505 33.333 0.00 0.00 40.82 2.66
4594 4974 6.984474 TCGTCTCAAAATAAGTGTCTCAAACT 59.016 34.615 0.00 0.00 0.00 2.66
4595 4975 7.173863 TCGTCTCAAAATAAGTGTCTCAAAC 57.826 36.000 0.00 0.00 0.00 2.93
4596 4976 7.709182 TCTTCGTCTCAAAATAAGTGTCTCAAA 59.291 33.333 0.00 0.00 0.00 2.69
4597 4977 7.207383 TCTTCGTCTCAAAATAAGTGTCTCAA 58.793 34.615 0.00 0.00 0.00 3.02
4598 4978 6.745116 TCTTCGTCTCAAAATAAGTGTCTCA 58.255 36.000 0.00 0.00 0.00 3.27
4599 4979 7.085116 TCTCTTCGTCTCAAAATAAGTGTCTC 58.915 38.462 0.00 0.00 0.00 3.36
4600 4980 6.982852 TCTCTTCGTCTCAAAATAAGTGTCT 58.017 36.000 0.00 0.00 0.00 3.41
4601 4981 6.864165 ACTCTCTTCGTCTCAAAATAAGTGTC 59.136 38.462 0.00 0.00 0.00 3.67
4602 4982 6.750148 ACTCTCTTCGTCTCAAAATAAGTGT 58.250 36.000 0.00 0.00 0.00 3.55
4603 4983 8.024285 AGTACTCTCTTCGTCTCAAAATAAGTG 58.976 37.037 0.00 0.00 0.00 3.16
4604 4984 8.113173 AGTACTCTCTTCGTCTCAAAATAAGT 57.887 34.615 0.00 0.00 0.00 2.24
4605 4985 9.710979 CTAGTACTCTCTTCGTCTCAAAATAAG 57.289 37.037 0.00 0.00 0.00 1.73
4606 4986 9.228949 ACTAGTACTCTCTTCGTCTCAAAATAA 57.771 33.333 0.00 0.00 0.00 1.40
4607 4987 8.789825 ACTAGTACTCTCTTCGTCTCAAAATA 57.210 34.615 0.00 0.00 0.00 1.40
4608 4988 7.690952 ACTAGTACTCTCTTCGTCTCAAAAT 57.309 36.000 0.00 0.00 0.00 1.82
4609 4989 7.013083 ACAACTAGTACTCTCTTCGTCTCAAAA 59.987 37.037 0.00 0.00 0.00 2.44
4610 4990 6.485984 ACAACTAGTACTCTCTTCGTCTCAAA 59.514 38.462 0.00 0.00 0.00 2.69
4611 4991 5.996513 ACAACTAGTACTCTCTTCGTCTCAA 59.003 40.000 0.00 0.00 0.00 3.02
4612 4992 5.549347 ACAACTAGTACTCTCTTCGTCTCA 58.451 41.667 0.00 0.00 0.00 3.27
4613 4993 7.775397 ATACAACTAGTACTCTCTTCGTCTC 57.225 40.000 0.00 0.00 35.05 3.36
4614 4994 8.452534 CAAATACAACTAGTACTCTCTTCGTCT 58.547 37.037 0.00 0.00 35.05 4.18
4615 4995 7.697291 CCAAATACAACTAGTACTCTCTTCGTC 59.303 40.741 0.00 0.00 35.05 4.20
4616 4996 7.536855 CCAAATACAACTAGTACTCTCTTCGT 58.463 38.462 0.00 0.00 35.05 3.85
4617 4997 6.472808 GCCAAATACAACTAGTACTCTCTTCG 59.527 42.308 0.00 0.00 35.05 3.79
4618 4998 7.548967 AGCCAAATACAACTAGTACTCTCTTC 58.451 38.462 0.00 0.00 35.05 2.87
4619 4999 7.483580 AGCCAAATACAACTAGTACTCTCTT 57.516 36.000 0.00 0.00 35.05 2.85
4620 5000 8.468399 GTTAGCCAAATACAACTAGTACTCTCT 58.532 37.037 0.00 0.00 35.05 3.10
4621 5001 8.248945 TGTTAGCCAAATACAACTAGTACTCTC 58.751 37.037 0.00 0.00 35.05 3.20
4622 5002 8.130671 TGTTAGCCAAATACAACTAGTACTCT 57.869 34.615 0.00 0.00 35.05 3.24
4623 5003 8.943909 ATGTTAGCCAAATACAACTAGTACTC 57.056 34.615 0.00 0.00 35.05 2.59
4624 5004 9.734984 AAATGTTAGCCAAATACAACTAGTACT 57.265 29.630 0.00 0.00 35.05 2.73
4650 5030 7.270757 TGTTAATCAGCACAGCTCTTAAAAA 57.729 32.000 0.00 0.00 36.40 1.94
4651 5031 6.875948 TGTTAATCAGCACAGCTCTTAAAA 57.124 33.333 0.00 0.00 36.40 1.52
4652 5032 6.875948 TTGTTAATCAGCACAGCTCTTAAA 57.124 33.333 0.00 0.00 36.40 1.52
4653 5033 6.875948 TTTGTTAATCAGCACAGCTCTTAA 57.124 33.333 0.00 0.00 36.40 1.85
4654 5034 6.875948 TTTTGTTAATCAGCACAGCTCTTA 57.124 33.333 0.00 0.00 36.40 2.10
4655 5035 5.772825 TTTTGTTAATCAGCACAGCTCTT 57.227 34.783 0.00 0.00 36.40 2.85
4656 5036 5.532406 TCTTTTTGTTAATCAGCACAGCTCT 59.468 36.000 0.00 0.00 36.40 4.09
4657 5037 5.762045 TCTTTTTGTTAATCAGCACAGCTC 58.238 37.500 0.00 0.00 36.40 4.09
4658 5038 5.772825 TCTTTTTGTTAATCAGCACAGCT 57.227 34.783 0.00 0.00 40.77 4.24
4659 5039 7.530010 TCTATCTTTTTGTTAATCAGCACAGC 58.470 34.615 0.00 0.00 0.00 4.40
4669 5049 9.834628 CCACGCTAAAATCTATCTTTTTGTTAA 57.165 29.630 0.00 0.00 31.15 2.01
4670 5050 9.221933 TCCACGCTAAAATCTATCTTTTTGTTA 57.778 29.630 0.00 0.00 31.15 2.41
4671 5051 8.106247 TCCACGCTAAAATCTATCTTTTTGTT 57.894 30.769 0.00 0.00 31.15 2.83
4672 5052 7.681939 TCCACGCTAAAATCTATCTTTTTGT 57.318 32.000 0.00 0.00 31.15 2.83
4673 5053 8.450964 TCTTCCACGCTAAAATCTATCTTTTTG 58.549 33.333 0.00 0.00 31.15 2.44
4674 5054 8.561738 TCTTCCACGCTAAAATCTATCTTTTT 57.438 30.769 0.00 0.00 31.15 1.94
4675 5055 8.041323 TCTCTTCCACGCTAAAATCTATCTTTT 58.959 33.333 0.00 0.00 33.17 2.27
4676 5056 7.556844 TCTCTTCCACGCTAAAATCTATCTTT 58.443 34.615 0.00 0.00 0.00 2.52
4677 5057 7.113658 TCTCTTCCACGCTAAAATCTATCTT 57.886 36.000 0.00 0.00 0.00 2.40
4678 5058 6.716934 TCTCTTCCACGCTAAAATCTATCT 57.283 37.500 0.00 0.00 0.00 1.98
4679 5059 6.926272 ACATCTCTTCCACGCTAAAATCTATC 59.074 38.462 0.00 0.00 0.00 2.08
4680 5060 6.821388 ACATCTCTTCCACGCTAAAATCTAT 58.179 36.000 0.00 0.00 0.00 1.98
4681 5061 6.096987 AGACATCTCTTCCACGCTAAAATCTA 59.903 38.462 0.00 0.00 0.00 1.98
4682 5062 5.091261 ACATCTCTTCCACGCTAAAATCT 57.909 39.130 0.00 0.00 0.00 2.40
4683 5063 5.112686 AGACATCTCTTCCACGCTAAAATC 58.887 41.667 0.00 0.00 0.00 2.17
4684 5064 5.091261 AGACATCTCTTCCACGCTAAAAT 57.909 39.130 0.00 0.00 0.00 1.82
4685 5065 4.495422 GAGACATCTCTTCCACGCTAAAA 58.505 43.478 1.44 0.00 39.81 1.52
4686 5066 3.119101 GGAGACATCTCTTCCACGCTAAA 60.119 47.826 8.74 0.00 42.48 1.85
4687 5067 2.427453 GGAGACATCTCTTCCACGCTAA 59.573 50.000 8.74 0.00 42.48 3.09
4688 5068 2.025155 GGAGACATCTCTTCCACGCTA 58.975 52.381 8.74 0.00 42.48 4.26
4689 5069 0.820871 GGAGACATCTCTTCCACGCT 59.179 55.000 8.74 0.00 42.48 5.07
4690 5070 0.820871 AGGAGACATCTCTTCCACGC 59.179 55.000 8.74 0.00 42.48 5.34
4691 5071 2.861462 GAGGAGACATCTCTTCCACG 57.139 55.000 9.33 0.00 41.56 4.94
4708 5088 2.359531 CTCTTACCTTGTAGAGCCGGAG 59.640 54.545 5.05 0.00 32.27 4.63
4709 5089 2.376109 CTCTTACCTTGTAGAGCCGGA 58.624 52.381 5.05 0.00 32.27 5.14
4710 5090 2.873133 CTCTTACCTTGTAGAGCCGG 57.127 55.000 0.00 0.00 32.27 6.13
4714 5094 5.140747 AGTGTTGCTCTTACCTTGTAGAG 57.859 43.478 0.00 0.00 40.66 2.43
4715 5095 5.336531 GCTAGTGTTGCTCTTACCTTGTAGA 60.337 44.000 0.00 0.00 0.00 2.59
4716 5096 4.865365 GCTAGTGTTGCTCTTACCTTGTAG 59.135 45.833 0.00 0.00 0.00 2.74
4717 5097 4.617530 CGCTAGTGTTGCTCTTACCTTGTA 60.618 45.833 0.00 0.00 0.00 2.41
4718 5098 3.665190 GCTAGTGTTGCTCTTACCTTGT 58.335 45.455 0.00 0.00 0.00 3.16
4719 5099 2.668457 CGCTAGTGTTGCTCTTACCTTG 59.332 50.000 0.00 0.00 0.00 3.61
4720 5100 2.353803 CCGCTAGTGTTGCTCTTACCTT 60.354 50.000 1.99 0.00 0.00 3.50
4721 5101 1.204941 CCGCTAGTGTTGCTCTTACCT 59.795 52.381 1.99 0.00 0.00 3.08
4722 5102 1.641577 CCGCTAGTGTTGCTCTTACC 58.358 55.000 1.99 0.00 0.00 2.85
4723 5103 1.067071 ACCCGCTAGTGTTGCTCTTAC 60.067 52.381 1.99 0.00 0.00 2.34
4724 5104 1.263356 ACCCGCTAGTGTTGCTCTTA 58.737 50.000 1.99 0.00 0.00 2.10
4725 5105 0.396811 AACCCGCTAGTGTTGCTCTT 59.603 50.000 1.99 0.00 0.00 2.85
4726 5106 0.396811 AAACCCGCTAGTGTTGCTCT 59.603 50.000 1.99 0.00 0.00 4.09
4727 5107 1.235724 AAAACCCGCTAGTGTTGCTC 58.764 50.000 1.99 0.00 0.00 4.26
4728 5108 2.554370 TAAAACCCGCTAGTGTTGCT 57.446 45.000 1.99 0.00 0.00 3.91
4729 5109 2.809696 TCTTAAAACCCGCTAGTGTTGC 59.190 45.455 1.99 0.00 0.00 4.17
4730 5110 3.435671 CCTCTTAAAACCCGCTAGTGTTG 59.564 47.826 1.99 0.00 0.00 3.33
4731 5111 3.325716 TCCTCTTAAAACCCGCTAGTGTT 59.674 43.478 1.99 0.00 0.00 3.32
4732 5112 2.901839 TCCTCTTAAAACCCGCTAGTGT 59.098 45.455 1.99 0.00 0.00 3.55
4733 5113 3.259902 GTCCTCTTAAAACCCGCTAGTG 58.740 50.000 0.00 0.00 0.00 2.74
4734 5114 2.901839 TGTCCTCTTAAAACCCGCTAGT 59.098 45.455 0.00 0.00 0.00 2.57
4735 5115 3.056035 ACTGTCCTCTTAAAACCCGCTAG 60.056 47.826 0.00 0.00 0.00 3.42
4736 5116 2.901839 ACTGTCCTCTTAAAACCCGCTA 59.098 45.455 0.00 0.00 0.00 4.26
4737 5117 1.697982 ACTGTCCTCTTAAAACCCGCT 59.302 47.619 0.00 0.00 0.00 5.52
4738 5118 2.074576 GACTGTCCTCTTAAAACCCGC 58.925 52.381 0.00 0.00 0.00 6.13
4739 5119 3.679824 AGACTGTCCTCTTAAAACCCG 57.320 47.619 3.76 0.00 0.00 5.28
4740 5120 5.622180 AGAAAGACTGTCCTCTTAAAACCC 58.378 41.667 3.76 0.00 29.89 4.11
4741 5121 8.722394 CATTAGAAAGACTGTCCTCTTAAAACC 58.278 37.037 13.37 0.00 29.89 3.27
4742 5122 8.722394 CCATTAGAAAGACTGTCCTCTTAAAAC 58.278 37.037 13.37 0.00 29.89 2.43
4743 5123 8.437575 ACCATTAGAAAGACTGTCCTCTTAAAA 58.562 33.333 13.37 5.06 29.89 1.52
4744 5124 7.974504 ACCATTAGAAAGACTGTCCTCTTAAA 58.025 34.615 13.37 5.61 29.89 1.52
4745 5125 7.554959 ACCATTAGAAAGACTGTCCTCTTAA 57.445 36.000 13.37 5.47 29.89 1.85
4746 5126 7.554959 AACCATTAGAAAGACTGTCCTCTTA 57.445 36.000 13.37 6.91 29.89 2.10
4747 5127 6.441088 AACCATTAGAAAGACTGTCCTCTT 57.559 37.500 13.37 2.01 31.41 2.85
4748 5128 6.441088 AAACCATTAGAAAGACTGTCCTCT 57.559 37.500 12.88 12.88 0.00 3.69
4749 5129 7.612677 TCTAAACCATTAGAAAGACTGTCCTC 58.387 38.462 3.76 1.83 43.48 3.71
4750 5130 7.310734 CCTCTAAACCATTAGAAAGACTGTCCT 60.311 40.741 3.76 0.00 45.20 3.85
4751 5131 6.819146 CCTCTAAACCATTAGAAAGACTGTCC 59.181 42.308 3.76 0.00 45.20 4.02
4752 5132 6.819146 CCCTCTAAACCATTAGAAAGACTGTC 59.181 42.308 0.00 0.00 45.20 3.51
4753 5133 6.712276 CCCTCTAAACCATTAGAAAGACTGT 58.288 40.000 0.54 0.00 45.20 3.55
4754 5134 5.586643 GCCCTCTAAACCATTAGAAAGACTG 59.413 44.000 0.54 0.00 45.20 3.51
4755 5135 5.339282 GGCCCTCTAAACCATTAGAAAGACT 60.339 44.000 0.00 0.00 45.20 3.24
4756 5136 4.882427 GGCCCTCTAAACCATTAGAAAGAC 59.118 45.833 0.00 0.00 45.20 3.01
4757 5137 4.788617 AGGCCCTCTAAACCATTAGAAAGA 59.211 41.667 0.00 0.00 45.20 2.52
4758 5138 5.117406 AGGCCCTCTAAACCATTAGAAAG 57.883 43.478 0.00 0.00 45.20 2.62
4759 5139 5.253096 AGAAGGCCCTCTAAACCATTAGAAA 59.747 40.000 0.62 0.00 45.20 2.52
4760 5140 4.788617 AGAAGGCCCTCTAAACCATTAGAA 59.211 41.667 0.62 0.00 45.20 2.10
4761 5141 4.371681 AGAAGGCCCTCTAAACCATTAGA 58.628 43.478 0.62 0.00 44.07 2.10
4762 5142 4.779993 AGAAGGCCCTCTAAACCATTAG 57.220 45.455 0.62 0.00 39.97 1.73
4763 5143 6.645884 TTTAGAAGGCCCTCTAAACCATTA 57.354 37.500 26.16 9.11 41.04 1.90
4764 5144 5.530176 TTTAGAAGGCCCTCTAAACCATT 57.470 39.130 26.16 0.00 41.04 3.16
4765 5145 5.015284 AGTTTTAGAAGGCCCTCTAAACCAT 59.985 40.000 28.64 17.74 43.99 3.55
4766 5146 4.352893 AGTTTTAGAAGGCCCTCTAAACCA 59.647 41.667 28.64 16.88 43.99 3.67
4767 5147 4.919793 AGTTTTAGAAGGCCCTCTAAACC 58.080 43.478 28.64 23.75 43.99 3.27
4768 5148 6.896021 AAAGTTTTAGAAGGCCCTCTAAAC 57.104 37.500 28.64 23.08 43.99 2.01
4769 5149 7.907841 AAAAAGTTTTAGAAGGCCCTCTAAA 57.092 32.000 26.16 26.16 43.11 1.85
4787 5167 9.746457 AGAATTGCTCTAAAGGATCTAAAAAGT 57.254 29.630 0.00 0.00 30.22 2.66
4806 5186 9.593134 CCCATATGACTACTCTATTAGAATTGC 57.407 37.037 3.65 0.00 0.00 3.56
4807 5187 9.593134 GCCCATATGACTACTCTATTAGAATTG 57.407 37.037 3.65 0.00 0.00 2.32
4808 5188 8.763601 GGCCCATATGACTACTCTATTAGAATT 58.236 37.037 3.65 0.00 0.00 2.17
4809 5189 7.345914 GGGCCCATATGACTACTCTATTAGAAT 59.654 40.741 19.95 0.00 0.00 2.40
4810 5190 6.668283 GGGCCCATATGACTACTCTATTAGAA 59.332 42.308 19.95 0.00 0.00 2.10
4811 5191 6.195700 GGGCCCATATGACTACTCTATTAGA 58.804 44.000 19.95 0.00 0.00 2.10
4812 5192 5.067936 CGGGCCCATATGACTACTCTATTAG 59.932 48.000 24.92 0.00 0.00 1.73
4813 5193 4.954202 CGGGCCCATATGACTACTCTATTA 59.046 45.833 24.92 0.00 0.00 0.98
4814 5194 3.769844 CGGGCCCATATGACTACTCTATT 59.230 47.826 24.92 0.00 0.00 1.73
4815 5195 3.011369 TCGGGCCCATATGACTACTCTAT 59.989 47.826 24.92 0.00 0.00 1.98
4816 5196 2.377531 TCGGGCCCATATGACTACTCTA 59.622 50.000 24.92 0.00 0.00 2.43
4817 5197 1.147191 TCGGGCCCATATGACTACTCT 59.853 52.381 24.92 0.00 0.00 3.24
4818 5198 1.629043 TCGGGCCCATATGACTACTC 58.371 55.000 24.92 0.00 0.00 2.59
4819 5199 2.180276 GATCGGGCCCATATGACTACT 58.820 52.381 24.92 0.00 0.00 2.57
4820 5200 1.135083 CGATCGGGCCCATATGACTAC 60.135 57.143 24.92 5.44 0.00 2.73
4821 5201 1.182667 CGATCGGGCCCATATGACTA 58.817 55.000 24.92 0.00 0.00 2.59
4822 5202 1.544825 CCGATCGGGCCCATATGACT 61.545 60.000 26.95 0.92 0.00 3.41
4823 5203 1.079127 CCGATCGGGCCCATATGAC 60.079 63.158 26.95 5.46 0.00 3.06
4824 5204 3.387716 CCGATCGGGCCCATATGA 58.612 61.111 26.95 11.58 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.