Multiple sequence alignment - TraesCS7D01G187700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G187700 chr7D 100.000 2949 0 0 1696 4644 140307728 140310676 0.000000e+00 5446
1 TraesCS7D01G187700 chr7D 100.000 1364 0 0 1 1364 140306033 140307396 0.000000e+00 2519
2 TraesCS7D01G187700 chr7D 91.646 1185 88 5 1696 2879 139310114 139308940 0.000000e+00 1629
3 TraesCS7D01G187700 chr7D 78.000 1600 202 68 2936 4452 139308935 139307403 0.000000e+00 867
4 TraesCS7D01G187700 chr7D 96.765 340 11 0 1025 1364 139310445 139310106 6.740000e-158 568
5 TraesCS7D01G187700 chr7D 95.189 291 14 0 1037 1327 554677227 554677517 1.180000e-125 460
6 TraesCS7D01G187700 chr7D 89.175 194 21 0 4451 4644 140316607 140316800 4.640000e-60 243
7 TraesCS7D01G187700 chr7A 93.618 2977 135 26 1696 4644 140652549 140655498 0.000000e+00 4394
8 TraesCS7D01G187700 chr7A 89.192 953 86 4 1938 2880 139425777 139424832 0.000000e+00 1173
9 TraesCS7D01G187700 chr7A 92.349 562 22 5 803 1364 140652017 140652557 0.000000e+00 780
10 TraesCS7D01G187700 chr7A 83.654 832 74 22 1 808 140650976 140651769 0.000000e+00 726
11 TraesCS7D01G187700 chr7A 81.455 852 84 41 2990 3811 139424788 139423981 8.480000e-177 630
12 TraesCS7D01G187700 chr7B 94.389 2317 98 19 1696 3995 105506601 105508902 0.000000e+00 3530
13 TraesCS7D01G187700 chr7B 92.049 1132 73 7 1758 2879 104567389 104566265 0.000000e+00 1576
14 TraesCS7D01G187700 chr7B 90.049 1216 78 19 1 1178 105505086 105506296 0.000000e+00 1535
15 TraesCS7D01G187700 chr7B 78.370 1595 216 64 2936 4452 104566260 104564717 0.000000e+00 915
16 TraesCS7D01G187700 chr7B 92.616 623 39 4 4011 4632 105509175 105509791 0.000000e+00 889
17 TraesCS7D01G187700 chr7B 94.706 340 18 0 1025 1364 104567804 104567465 3.180000e-146 529
18 TraesCS7D01G187700 chr7B 91.057 123 7 1 3327 3449 105518781 105518899 3.720000e-36 163
19 TraesCS7D01G187700 chr1A 86.458 288 36 3 3015 3301 535479100 535478815 3.490000e-81 313
20 TraesCS7D01G187700 chr1A 85.274 292 39 4 3015 3305 24905208 24904920 9.770000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G187700 chr7D 140306033 140310676 4643 False 3982.500000 5446 100.000000 1 4644 2 chr7D.!!$F3 4643
1 TraesCS7D01G187700 chr7D 139307403 139310445 3042 True 1021.333333 1629 88.803667 1025 4452 3 chr7D.!!$R1 3427
2 TraesCS7D01G187700 chr7A 140650976 140655498 4522 False 1966.666667 4394 89.873667 1 4644 3 chr7A.!!$F1 4643
3 TraesCS7D01G187700 chr7A 139423981 139425777 1796 True 901.500000 1173 85.323500 1938 3811 2 chr7A.!!$R1 1873
4 TraesCS7D01G187700 chr7B 105505086 105509791 4705 False 1984.666667 3530 92.351333 1 4632 3 chr7B.!!$F2 4631
5 TraesCS7D01G187700 chr7B 104564717 104567804 3087 True 1006.666667 1576 88.375000 1025 4452 3 chr7B.!!$R1 3427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 412 1.536072 CCGAGCTATGCTAAGTTCGCA 60.536 52.381 15.85 4.36 45.44 5.10 F
1290 1621 2.202676 GAGGCTCGGCACTTCTCG 60.203 66.667 0.00 0.00 0.00 4.04 F
1763 2221 0.690192 CATATACCCATCCCCGCACA 59.310 55.000 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 2196 0.331616 GGGATGGGTATATGGCCACC 59.668 60.000 8.16 4.05 0.0 4.61 R
2678 3176 1.599047 CCCAGCTCACGATCTTGGT 59.401 57.895 0.00 0.00 0.0 3.67 R
3672 4230 0.601311 ACAGAAGTCAGAACCAGCGC 60.601 55.000 0.00 0.00 0.0 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 197 2.376109 GAGTGGAAGGGAGATGTCGTA 58.624 52.381 0.00 0.00 0.00 3.43
380 412 1.536072 CCGAGCTATGCTAAGTTCGCA 60.536 52.381 15.85 4.36 45.44 5.10
383 415 4.169508 CGAGCTATGCTAAGTTCGCATAT 58.830 43.478 19.10 8.43 45.97 1.78
430 462 6.347321 CCCTTTGATTCAAACCGTTATTTTGC 60.347 38.462 7.74 0.00 34.50 3.68
514 546 9.602568 TTTGTCTTGTACATTTACTAACTCACA 57.397 29.630 0.00 0.00 38.10 3.58
595 629 5.240844 CAGTGAAGTCTAAACCGGGAAAATT 59.759 40.000 6.32 0.00 0.00 1.82
603 637 9.862149 AGTCTAAACCGGGAAAATTTATATCAT 57.138 29.630 6.32 0.00 0.00 2.45
605 639 9.854668 TCTAAACCGGGAAAATTTATATCATCA 57.145 29.630 6.32 0.00 0.00 3.07
720 764 7.793902 ACTCACAAACTTTATTATGTCGACAC 58.206 34.615 22.71 0.00 0.00 3.67
721 765 7.439955 ACTCACAAACTTTATTATGTCGACACA 59.560 33.333 22.71 6.35 36.78 3.72
766 810 2.525105 ATCGGGTTGGCCTAAACAAT 57.475 45.000 3.32 0.00 34.45 2.71
772 817 4.020543 GGGTTGGCCTAAACAATATGACA 58.979 43.478 3.32 0.00 34.45 3.58
775 820 6.042143 GGTTGGCCTAAACAATATGACAATG 58.958 40.000 3.32 0.00 0.00 2.82
813 1112 4.569943 ACATGCTTTACGAGATTGTGAGT 58.430 39.130 0.00 0.00 0.00 3.41
829 1128 4.738124 TGTGAGTCTCAACATTCGAGATC 58.262 43.478 3.51 0.00 41.39 2.75
844 1143 6.688637 TTCGAGATCCTAAATTCGTGACTA 57.311 37.500 0.00 0.00 34.83 2.59
845 1144 6.688637 TCGAGATCCTAAATTCGTGACTAA 57.311 37.500 0.00 0.00 34.83 2.24
964 1271 4.202010 CCCAACCAAAATAATCGCTCGATT 60.202 41.667 19.45 19.45 45.58 3.34
1045 1364 4.033776 CACCCATGGCGTCCACCT 62.034 66.667 6.09 0.00 35.80 4.00
1046 1365 3.717294 ACCCATGGCGTCCACCTC 61.717 66.667 6.09 0.00 35.80 3.85
1047 1366 4.489771 CCCATGGCGTCCACCTCC 62.490 72.222 6.09 0.00 35.80 4.30
1048 1367 3.716195 CCATGGCGTCCACCTCCA 61.716 66.667 0.00 0.00 35.80 3.86
1049 1368 2.436646 CATGGCGTCCACCTCCAC 60.437 66.667 0.50 0.00 35.80 4.02
1050 1369 4.082523 ATGGCGTCCACCTCCACG 62.083 66.667 0.50 0.00 35.80 4.94
1052 1371 4.736896 GGCGTCCACCTCCACGTC 62.737 72.222 0.00 0.00 38.32 4.34
1053 1372 4.736896 GCGTCCACCTCCACGTCC 62.737 72.222 0.00 0.00 38.32 4.79
1054 1373 2.989824 CGTCCACCTCCACGTCCT 60.990 66.667 0.00 0.00 0.00 3.85
1055 1374 2.971452 GTCCACCTCCACGTCCTC 59.029 66.667 0.00 0.00 0.00 3.71
1056 1375 2.675423 TCCACCTCCACGTCCTCG 60.675 66.667 0.00 0.00 43.34 4.63
1149 1480 4.144727 TCCCCTCTCGCCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
1290 1621 2.202676 GAGGCTCGGCACTTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
1749 2207 2.579657 CCTCCGCGGTGGCCATATA 61.580 63.158 31.34 5.18 37.80 0.86
1753 2211 2.833227 GCGGTGGCCATATACCCA 59.167 61.111 9.72 0.00 33.32 4.51
1763 2221 0.690192 CATATACCCATCCCCGCACA 59.310 55.000 0.00 0.00 0.00 4.57
2026 2524 2.037620 CTATGGCCGCCTCAGAAGCT 62.038 60.000 11.61 0.00 0.00 3.74
2176 2674 1.078426 GGCAGCAATACCACCGACT 60.078 57.895 0.00 0.00 0.00 4.18
2233 2731 2.359169 GGCCGGATCACACTCTGGA 61.359 63.158 5.05 0.00 43.35 3.86
2303 2801 3.625897 CGGTGCCAGTGTGGGAGA 61.626 66.667 0.00 0.00 39.03 3.71
2473 2971 2.747686 GGAGACCGACAAAGGGCA 59.252 61.111 0.00 0.00 43.43 5.36
2548 3046 2.423446 ACCGTAGTTGGGTGTTTGTT 57.577 45.000 0.00 0.00 36.14 2.83
2667 3165 1.212751 CGATGGTCACTGCAGACGA 59.787 57.895 23.35 13.66 39.42 4.20
2671 3169 1.213013 GGTCACTGCAGACGACGAT 59.787 57.895 23.35 0.00 39.42 3.73
2678 3176 1.131315 CTGCAGACGACGATGAGAAGA 59.869 52.381 8.42 0.00 0.00 2.87
2849 3348 9.472361 CTCAAATTTGATTCTGTTCTTGTTCAT 57.528 29.630 20.76 0.00 36.46 2.57
2905 3404 8.714179 TGTGATGTTACATTAAGGTTAAGAACG 58.286 33.333 0.00 0.00 0.00 3.95
2954 3454 5.615925 AGGTCAAAGAACAGTCTACACTT 57.384 39.130 0.00 0.00 32.16 3.16
3090 3592 3.630312 TGGTTCTTTTGTGTAACTGAGGC 59.370 43.478 0.00 0.00 38.04 4.70
3199 3701 8.087750 AGATTAACATCTTCTAGTAGCTCATGC 58.912 37.037 0.00 0.00 36.18 4.06
3242 3744 6.598503 AGAATCTCATCACATTTCCAGCATA 58.401 36.000 0.00 0.00 0.00 3.14
3271 3773 2.480593 GTGTCGCAACACGCTTTTC 58.519 52.632 0.00 0.00 45.84 2.29
3305 3809 6.878923 TGTTTCATCAGAAGTTATGGTCGATT 59.121 34.615 0.00 0.00 34.71 3.34
3322 3845 0.407139 ATTCTTGTTGCTCTGGGCCT 59.593 50.000 4.53 0.00 40.92 5.19
3323 3846 0.538057 TTCTTGTTGCTCTGGGCCTG 60.538 55.000 4.53 4.06 40.92 4.85
3325 3848 1.521450 CTTGTTGCTCTGGGCCTGTG 61.521 60.000 4.53 6.60 40.92 3.66
3545 4102 8.310406 TCAGTTTGAGTAACATGTGTAAGATG 57.690 34.615 0.00 0.00 44.35 2.90
3646 4204 3.188048 GCATTTGATTAGGAGGCTGATCG 59.812 47.826 0.00 0.00 0.00 3.69
3672 4230 5.093849 AGATGCTGGAATTTCAAATTGGG 57.906 39.130 0.00 0.00 0.00 4.12
3749 4308 5.743636 ATTGGACATTGCAATTAACCAGT 57.256 34.783 20.60 17.46 34.69 4.00
3758 4317 7.607223 ACATTGCAATTAACCAGTTATGCAAAT 59.393 29.630 24.31 17.06 45.77 2.32
3863 4427 5.296780 ACCAATAAATATCTGGAGTTGCGTG 59.703 40.000 0.00 0.00 34.16 5.34
3937 4501 8.141268 TGATAGCTTTGAACCTTTTACCTTTTG 58.859 33.333 0.00 0.00 0.00 2.44
3940 4504 5.422214 TTTGAACCTTTTACCTTTTGCCA 57.578 34.783 0.00 0.00 0.00 4.92
3963 4527 8.478066 GCCAATGATATATCACATGTAGTAGGA 58.522 37.037 17.60 0.00 40.03 2.94
3980 4544 2.261729 AGGAGGGGAGACTGTTTCTTC 58.738 52.381 0.00 0.00 33.22 2.87
4056 4876 8.980481 ATACCCAATATCTTTACAGGAGTTTG 57.020 34.615 0.00 0.00 0.00 2.93
4149 4971 5.665459 ACTCTAGTTCTGGATTCAATTCCG 58.335 41.667 0.00 0.00 38.74 4.30
4152 4974 7.093465 ACTCTAGTTCTGGATTCAATTCCGTAA 60.093 37.037 0.00 0.00 38.74 3.18
4153 4975 7.792032 TCTAGTTCTGGATTCAATTCCGTAAT 58.208 34.615 0.00 0.00 38.74 1.89
4184 5022 6.545666 ACCACACAGAAGATTATTTGTTCACA 59.454 34.615 0.00 0.00 0.00 3.58
4185 5023 7.068103 ACCACACAGAAGATTATTTGTTCACAA 59.932 33.333 0.00 0.00 0.00 3.33
4230 5087 7.687941 AGTGTCTAATGGGTATTGTGAAAAG 57.312 36.000 0.00 0.00 0.00 2.27
4235 5092 9.178758 GTCTAATGGGTATTGTGAAAAGAGAAT 57.821 33.333 0.00 0.00 0.00 2.40
4236 5093 9.753674 TCTAATGGGTATTGTGAAAAGAGAATT 57.246 29.630 0.00 0.00 0.00 2.17
4317 5180 5.653330 ACCTAGTAGCTTAACTCAAGTCTCC 59.347 44.000 0.00 0.00 36.55 3.71
4417 5280 3.057526 TGTCTGGTCTCTCATGTTGTACG 60.058 47.826 0.00 0.00 0.00 3.67
4453 5316 3.771577 AGGGATTCTCACAAGTTTCGT 57.228 42.857 0.00 0.00 0.00 3.85
4460 5323 3.113322 TCTCACAAGTTTCGTCGTTCAG 58.887 45.455 0.00 0.00 0.00 3.02
4632 5495 1.540267 TCGAAGACCTTGAAGAGTCGG 59.460 52.381 0.00 0.00 38.08 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.693606 CCTTTTGTGGTGCTTTCCCAT 59.306 47.619 0.00 0.00 33.76 4.00
158 184 3.383698 TCTTCCTTACGACATCTCCCT 57.616 47.619 0.00 0.00 0.00 4.20
171 197 5.971493 AGGTGTCCTATAGCTATCTTCCTT 58.029 41.667 10.16 0.00 28.47 3.36
305 337 9.582431 CACACTCGGATTTAAGTCTTAGATTTA 57.418 33.333 0.00 0.00 0.00 1.40
383 415 9.713684 AAGGGATAAGACCATCAAAAATTCATA 57.286 29.630 0.00 0.00 0.00 2.15
603 637 5.240623 GGCATCCGTACAATTTCCAATATGA 59.759 40.000 0.00 0.00 0.00 2.15
604 638 5.009510 TGGCATCCGTACAATTTCCAATATG 59.990 40.000 0.00 0.00 0.00 1.78
605 639 5.136828 TGGCATCCGTACAATTTCCAATAT 58.863 37.500 0.00 0.00 0.00 1.28
620 654 1.885887 TCTTTTGGTCTTTGGCATCCG 59.114 47.619 0.00 0.00 0.00 4.18
699 741 7.067116 CGTTGTGTCGACATAATAAAGTTTGT 58.933 34.615 27.15 0.00 29.93 2.83
703 745 6.774354 AACGTTGTGTCGACATAATAAAGT 57.226 33.333 27.15 20.82 34.70 2.66
716 760 6.255020 TCTCTTCTTCTTGTAAACGTTGTGTC 59.745 38.462 0.00 0.00 0.00 3.67
720 764 7.685594 ACTTTCTCTTCTTCTTGTAAACGTTG 58.314 34.615 0.00 0.00 0.00 4.10
721 765 7.845066 ACTTTCTCTTCTTCTTGTAAACGTT 57.155 32.000 0.00 0.00 0.00 3.99
772 817 8.757982 AGCATGTCTTACATTAGGATTTCATT 57.242 30.769 0.00 0.00 36.53 2.57
775 820 9.937175 GTAAAGCATGTCTTACATTAGGATTTC 57.063 33.333 11.83 0.00 36.53 2.17
813 1112 6.697455 CGAATTTAGGATCTCGAATGTTGAGA 59.303 38.462 0.00 0.00 45.84 3.27
844 1143 9.865321 GCATGCACATTTCCTTATATCATTATT 57.135 29.630 14.21 0.00 0.00 1.40
845 1144 8.186163 CGCATGCACATTTCCTTATATCATTAT 58.814 33.333 19.57 0.00 0.00 1.28
921 1228 0.944386 CCGAAACATCTAATGGGCCG 59.056 55.000 0.00 0.00 33.60 6.13
964 1271 5.544176 AGAGTGACATGTTTTTCTCTAGGGA 59.456 40.000 15.91 0.00 31.73 4.20
1007 1314 0.837272 GGATGGGGAATTCTCGGTGA 59.163 55.000 5.23 0.00 0.00 4.02
1049 1368 3.417224 TGACGACGGACGAGGACG 61.417 66.667 6.90 1.76 45.77 4.79
1050 1369 2.175322 GTGACGACGGACGAGGAC 59.825 66.667 6.90 0.00 45.77 3.85
1051 1370 3.052082 GGTGACGACGGACGAGGA 61.052 66.667 6.90 0.00 45.77 3.71
1052 1371 4.112341 GGGTGACGACGGACGAGG 62.112 72.222 6.90 0.00 45.77 4.63
1053 1372 3.036783 GAGGGTGACGACGGACGAG 62.037 68.421 6.90 0.00 45.77 4.18
1054 1373 3.052082 GAGGGTGACGACGGACGA 61.052 66.667 6.90 0.00 45.77 4.20
1056 1375 1.372623 GTTGAGGGTGACGACGGAC 60.373 63.158 0.00 0.00 0.00 4.79
1738 2196 0.331616 GGGATGGGTATATGGCCACC 59.668 60.000 8.16 4.05 0.00 4.61
1955 2435 0.962489 TATAGAGCCTCCGAAGCTGC 59.038 55.000 0.00 0.00 41.75 5.25
1990 2470 3.182967 CATAGACAGCACGGAAGAAGAC 58.817 50.000 0.00 0.00 0.00 3.01
2026 2524 1.241165 CAAAGAGCCAGTGTGATGCA 58.759 50.000 0.00 0.00 0.00 3.96
2233 2731 4.047125 CCCACCATTCCAGCCGGT 62.047 66.667 1.90 0.00 0.00 5.28
2303 2801 2.044469 GCAATCCTCCTCCTCCCTCAT 61.044 57.143 0.00 0.00 0.00 2.90
2667 3165 2.755655 ACGATCTTGGTCTTCTCATCGT 59.244 45.455 0.00 0.00 41.03 3.73
2671 3169 2.094494 GCTCACGATCTTGGTCTTCTCA 60.094 50.000 0.00 0.00 0.00 3.27
2678 3176 1.599047 CCCAGCTCACGATCTTGGT 59.401 57.895 0.00 0.00 0.00 3.67
2849 3348 9.529325 CAAATACCGAAACTACATTGATAGAGA 57.471 33.333 0.00 0.00 0.00 3.10
2905 3404 8.942338 ATAAAAAGGAAAAACAAGGTGAACTC 57.058 30.769 0.00 0.00 0.00 3.01
3090 3592 9.757227 TTTTATTTACAGTGACCAAAAGGAATG 57.243 29.630 0.00 0.00 0.00 2.67
3199 3701 8.628630 AGATTCTAAAAGGTTTTCTCCTCAAG 57.371 34.615 0.00 0.00 36.74 3.02
3242 3744 2.126467 GTTGCGACACATTTGCATGTT 58.874 42.857 0.00 0.00 44.65 2.71
3305 3809 1.073722 CAGGCCCAGAGCAACAAGA 59.926 57.895 0.00 0.00 46.50 3.02
3322 3845 4.019792 AGATGTGCTCATTACCAACACA 57.980 40.909 2.26 0.00 44.56 3.72
3323 3846 6.683974 ATAAGATGTGCTCATTACCAACAC 57.316 37.500 2.26 0.00 34.06 3.32
3325 3848 8.607441 TCATATAAGATGTGCTCATTACCAAC 57.393 34.615 2.26 0.00 34.06 3.77
3384 3908 9.961265 ATGATGTCAATATTAGTTTGCAATCAG 57.039 29.630 10.05 0.00 33.31 2.90
3387 3911 9.139734 AGGATGATGTCAATATTAGTTTGCAAT 57.860 29.630 0.00 0.00 0.00 3.56
3401 3925 6.380560 TGAATAAATTGCCAGGATGATGTCAA 59.619 34.615 0.00 0.00 39.69 3.18
3646 4204 6.927381 CCAATTTGAAATTCCAGCATCTATCC 59.073 38.462 0.00 0.00 0.00 2.59
3672 4230 0.601311 ACAGAAGTCAGAACCAGCGC 60.601 55.000 0.00 0.00 0.00 5.92
3700 4258 7.833285 ATGATGGATCATGATGAAATGTGAA 57.167 32.000 14.30 0.00 45.27 3.18
3859 4423 9.968743 GTAAATATATAGAAACCTAATGCACGC 57.031 33.333 0.00 0.00 0.00 5.34
3937 4501 8.478066 TCCTACTACATGTGATATATCATTGGC 58.522 37.037 18.18 6.42 39.30 4.52
3940 4504 9.206690 CCCTCCTACTACATGTGATATATCATT 57.793 37.037 18.18 6.96 39.30 2.57
3963 4527 2.424684 AGGAAGAAACAGTCTCCCCT 57.575 50.000 0.00 0.00 34.56 4.79
3964 4528 5.952347 TTATAGGAAGAAACAGTCTCCCC 57.048 43.478 0.00 0.00 34.56 4.81
3965 4529 9.901172 TTTAATTATAGGAAGAAACAGTCTCCC 57.099 33.333 0.00 0.00 34.56 4.30
4095 4917 1.229336 ACAGGCAGGGTGTAGAGCT 60.229 57.895 0.00 0.00 0.00 4.09
4096 4918 1.078848 CACAGGCAGGGTGTAGAGC 60.079 63.158 0.00 0.00 0.00 4.09
4097 4919 1.078848 GCACAGGCAGGGTGTAGAG 60.079 63.158 5.98 0.00 40.72 2.43
4149 4971 5.353394 TCTTCTGTGTGGTATGGGATTAC 57.647 43.478 0.00 0.00 0.00 1.89
4152 4974 6.770286 ATAATCTTCTGTGTGGTATGGGAT 57.230 37.500 0.00 0.00 0.00 3.85
4153 4975 6.575244 AATAATCTTCTGTGTGGTATGGGA 57.425 37.500 0.00 0.00 0.00 4.37
4238 5095 9.407380 AGATATTGCAGTATGTATTGGTCAAAA 57.593 29.630 6.44 0.00 39.31 2.44
4239 5096 8.978874 AGATATTGCAGTATGTATTGGTCAAA 57.021 30.769 6.44 0.00 39.31 2.69
4317 5180 0.598065 CTCCAACTTGGCTTTTCCCG 59.402 55.000 2.52 0.00 37.47 5.14
4417 5280 2.815647 CTTTCCAGACTCCGGCGC 60.816 66.667 0.00 0.00 0.00 6.53
4453 5316 2.826128 ACTGCATCTACTTCCTGAACGA 59.174 45.455 0.00 0.00 0.00 3.85
4460 5323 3.378742 TCGAGAAGACTGCATCTACTTCC 59.621 47.826 14.23 8.43 39.33 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.