Multiple sequence alignment - TraesCS7D01G187400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G187400 chr7D 100.000 3523 0 0 1 3523 139886741 139890263 0.000000e+00 6506.0
1 TraesCS7D01G187400 chr7D 89.551 1780 121 26 829 2582 139939747 139941487 0.000000e+00 2196.0
2 TraesCS7D01G187400 chr7D 92.315 1119 80 3 1419 2531 139865575 139866693 0.000000e+00 1585.0
3 TraesCS7D01G187400 chr7D 88.469 529 30 11 873 1389 139865066 139865575 8.360000e-171 610.0
4 TraesCS7D01G187400 chr7D 87.550 249 21 4 1 242 139939258 139939503 2.680000e-71 279.0
5 TraesCS7D01G187400 chr7D 97.391 115 3 0 412 526 139864813 139864927 2.770000e-46 196.0
6 TraesCS7D01G187400 chr7D 81.513 238 18 10 16 243 139863406 139863627 4.680000e-39 172.0
7 TraesCS7D01G187400 chr7A 93.694 1792 85 13 808 2582 139744401 139746181 0.000000e+00 2658.0
8 TraesCS7D01G187400 chr7A 91.706 1688 118 8 908 2589 139788449 139790120 0.000000e+00 2322.0
9 TraesCS7D01G187400 chr7A 88.534 1814 137 33 796 2590 139611204 139612965 0.000000e+00 2132.0
10 TraesCS7D01G187400 chr7A 93.135 539 23 7 1 533 139743861 139744391 0.000000e+00 778.0
11 TraesCS7D01G187400 chr7A 92.172 396 19 7 1 396 139666422 139666805 1.850000e-152 549.0
12 TraesCS7D01G187400 chr7A 89.238 223 14 3 1 216 139787381 139787600 1.610000e-68 270.0
13 TraesCS7D01G187400 chr7A 83.412 211 19 10 337 531 139610991 139611201 7.770000e-42 182.0
14 TraesCS7D01G187400 chr7A 93.478 92 6 0 433 524 49404684 49404593 1.710000e-28 137.0
15 TraesCS7D01G187400 chr7A 92.391 92 7 0 433 524 49894617 49894708 7.940000e-27 132.0
16 TraesCS7D01G187400 chr7A 90.541 74 5 2 346 418 139788102 139788174 2.890000e-16 97.1
17 TraesCS7D01G187400 chr7B 93.079 1806 95 15 796 2588 105001554 105003342 0.000000e+00 2615.0
18 TraesCS7D01G187400 chr7B 90.936 1721 111 21 873 2582 104955864 104957550 0.000000e+00 2272.0
19 TraesCS7D01G187400 chr7B 89.210 1798 141 29 829 2590 105009641 105011421 0.000000e+00 2196.0
20 TraesCS7D01G187400 chr7B 92.871 533 32 4 1 531 105000017 105000545 0.000000e+00 769.0
21 TraesCS7D01G187400 chr7B 87.778 270 15 9 796 1058 105000548 105000806 2.060000e-77 300.0
22 TraesCS7D01G187400 chr7B 86.345 249 24 6 1 242 105009152 105009397 2.700000e-66 263.0
23 TraesCS7D01G187400 chr7B 84.753 223 19 10 323 531 105001330 105001551 3.560000e-50 209.0
24 TraesCS7D01G187400 chr4A 86.075 1824 173 34 796 2599 662136694 662138456 0.000000e+00 1886.0
25 TraesCS7D01G187400 chr4A 85.479 1825 176 34 796 2599 662143157 662144913 0.000000e+00 1820.0
26 TraesCS7D01G187400 chr4A 90.053 945 83 8 2586 3521 180449641 180450583 0.000000e+00 1214.0
27 TraesCS7D01G187400 chr4A 89.373 941 91 4 2589 3523 413512859 413511922 0.000000e+00 1175.0
28 TraesCS7D01G187400 chr2A 86.930 1316 130 25 1248 2555 778252429 778253710 0.000000e+00 1439.0
29 TraesCS7D01G187400 chr2A 91.596 940 72 4 2589 3523 197065631 197064694 0.000000e+00 1291.0
30 TraesCS7D01G187400 chr2A 93.617 94 6 0 433 526 778251917 778252010 1.320000e-29 141.0
31 TraesCS7D01G187400 chr5B 92.125 927 64 4 2604 3523 559470664 559471588 0.000000e+00 1299.0
32 TraesCS7D01G187400 chr5B 92.264 879 65 2 2647 3523 559467222 559468099 0.000000e+00 1243.0
33 TraesCS7D01G187400 chr5B 94.118 272 14 2 530 799 472459056 472458785 2.530000e-111 412.0
34 TraesCS7D01G187400 chr5B 93.214 280 16 3 522 799 636603110 636602832 3.270000e-110 409.0
35 TraesCS7D01G187400 chr5B 93.704 270 17 0 530 799 354608787 354608518 4.230000e-109 405.0
36 TraesCS7D01G187400 chr2D 89.608 943 86 7 2589 3522 336652032 336651093 0.000000e+00 1188.0
37 TraesCS7D01G187400 chr2D 92.553 94 7 0 433 526 634917898 634917805 6.130000e-28 135.0
38 TraesCS7D01G187400 chr1D 89.502 943 86 9 2589 3523 189886961 189887898 0.000000e+00 1181.0
39 TraesCS7D01G187400 chr6B 89.323 946 91 5 2585 3523 42234344 42235286 0.000000e+00 1179.0
40 TraesCS7D01G187400 chr6B 93.727 271 16 1 530 799 38642230 38642500 4.230000e-109 405.0
41 TraesCS7D01G187400 chr3D 89.218 946 92 6 2586 3523 277917749 277918692 0.000000e+00 1173.0
42 TraesCS7D01G187400 chr3B 94.444 270 15 0 530 799 542282917 542283186 1.960000e-112 416.0
43 TraesCS7D01G187400 chr2B 94.074 270 16 0 530 799 62008434 62008165 9.100000e-111 411.0
44 TraesCS7D01G187400 chr4B 94.030 268 16 0 532 799 563878539 563878806 1.180000e-109 407.0
45 TraesCS7D01G187400 chr4B 93.704 270 17 0 530 799 617098260 617097991 4.230000e-109 405.0
46 TraesCS7D01G187400 chr1B 93.704 270 17 0 530 799 89791713 89791982 4.230000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G187400 chr7D 139886741 139890263 3522 False 6506.000000 6506 100.00000 1 3523 1 chr7D.!!$F1 3522
1 TraesCS7D01G187400 chr7D 139939258 139941487 2229 False 1237.500000 2196 88.55050 1 2582 2 chr7D.!!$F3 2581
2 TraesCS7D01G187400 chr7D 139863406 139866693 3287 False 640.750000 1585 89.92200 16 2531 4 chr7D.!!$F2 2515
3 TraesCS7D01G187400 chr7A 139743861 139746181 2320 False 1718.000000 2658 93.41450 1 2582 2 chr7A.!!$F4 2581
4 TraesCS7D01G187400 chr7A 139610991 139612965 1974 False 1157.000000 2132 85.97300 337 2590 2 chr7A.!!$F3 2253
5 TraesCS7D01G187400 chr7A 139787381 139790120 2739 False 896.366667 2322 90.49500 1 2589 3 chr7A.!!$F5 2588
6 TraesCS7D01G187400 chr7B 104955864 104957550 1686 False 2272.000000 2272 90.93600 873 2582 1 chr7B.!!$F1 1709
7 TraesCS7D01G187400 chr7B 105009152 105011421 2269 False 1229.500000 2196 87.77750 1 2590 2 chr7B.!!$F3 2589
8 TraesCS7D01G187400 chr7B 105000017 105003342 3325 False 973.250000 2615 89.62025 1 2588 4 chr7B.!!$F2 2587
9 TraesCS7D01G187400 chr4A 662136694 662138456 1762 False 1886.000000 1886 86.07500 796 2599 1 chr4A.!!$F2 1803
10 TraesCS7D01G187400 chr4A 662143157 662144913 1756 False 1820.000000 1820 85.47900 796 2599 1 chr4A.!!$F3 1803
11 TraesCS7D01G187400 chr4A 180449641 180450583 942 False 1214.000000 1214 90.05300 2586 3521 1 chr4A.!!$F1 935
12 TraesCS7D01G187400 chr4A 413511922 413512859 937 True 1175.000000 1175 89.37300 2589 3523 1 chr4A.!!$R1 934
13 TraesCS7D01G187400 chr2A 197064694 197065631 937 True 1291.000000 1291 91.59600 2589 3523 1 chr2A.!!$R1 934
14 TraesCS7D01G187400 chr2A 778251917 778253710 1793 False 790.000000 1439 90.27350 433 2555 2 chr2A.!!$F1 2122
15 TraesCS7D01G187400 chr5B 559467222 559471588 4366 False 1271.000000 1299 92.19450 2604 3523 2 chr5B.!!$F1 919
16 TraesCS7D01G187400 chr2D 336651093 336652032 939 True 1188.000000 1188 89.60800 2589 3522 1 chr2D.!!$R1 933
17 TraesCS7D01G187400 chr1D 189886961 189887898 937 False 1181.000000 1181 89.50200 2589 3523 1 chr1D.!!$F1 934
18 TraesCS7D01G187400 chr6B 42234344 42235286 942 False 1179.000000 1179 89.32300 2585 3523 1 chr6B.!!$F2 938
19 TraesCS7D01G187400 chr3D 277917749 277918692 943 False 1173.000000 1173 89.21800 2586 3523 1 chr3D.!!$F1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 2221 0.035152 CTCAGCCACACCTTGCCATA 60.035 55.0 0.0 0.0 0.00 2.74 F
578 2234 0.112218 TGCCATACTTTGCCACACCT 59.888 50.0 0.0 0.0 0.00 4.00 F
707 2363 0.998928 TGGCAAGATTCCCTTAGGCA 59.001 50.0 0.0 0.0 36.71 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2372 5176 1.003812 CCATCCAACAGAACCCCGTTA 59.996 52.381 0.00 0.0 0.00 3.18 R
2419 5223 3.559069 AGGAACCCGACGTAATCATCTA 58.441 45.455 0.00 0.0 0.00 1.98 R
2652 5492 1.669604 TAGTTGGCTTGTCACGCAAA 58.330 45.000 3.49 0.0 36.53 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 129 6.364165 CACTATTTCAAATGTGCAAACTCTGG 59.636 38.462 0.00 0.00 0.00 3.86
135 143 7.062605 GTGCAAACTCTGGATAAACATCAAATG 59.937 37.037 0.00 0.00 0.00 2.32
155 169 8.283992 TCAAATGTTGAAGCATGCTTTATTTTG 58.716 29.630 32.36 29.35 36.59 2.44
225 710 0.892755 TTTCCTACCATGTCGCTCGT 59.107 50.000 0.00 0.00 0.00 4.18
308 798 6.936968 AGGGAGAGTACAGTTTTACAAGAT 57.063 37.500 0.00 0.00 0.00 2.40
320 810 6.594159 CAGTTTTACAAGATCCCACGAATACT 59.406 38.462 0.00 0.00 0.00 2.12
368 1122 1.525197 TCTCGTGTTAGCAAACAAGCG 59.475 47.619 0.20 0.00 46.84 4.68
535 2191 4.098196 CGAGGAGAGAAAGTTACTAAGGGG 59.902 50.000 0.00 0.00 0.00 4.79
536 2192 3.775866 AGGAGAGAAAGTTACTAAGGGGC 59.224 47.826 0.00 0.00 0.00 5.80
537 2193 3.775866 GGAGAGAAAGTTACTAAGGGGCT 59.224 47.826 0.00 0.00 0.00 5.19
538 2194 4.383226 GGAGAGAAAGTTACTAAGGGGCTG 60.383 50.000 0.00 0.00 0.00 4.85
539 2195 4.168883 AGAGAAAGTTACTAAGGGGCTGT 58.831 43.478 0.00 0.00 0.00 4.40
541 2197 5.073280 AGAGAAAGTTACTAAGGGGCTGTTT 59.927 40.000 0.00 0.00 0.00 2.83
542 2198 5.070685 AGAAAGTTACTAAGGGGCTGTTTG 58.929 41.667 0.00 0.00 0.00 2.93
544 2200 2.714793 AGTTACTAAGGGGCTGTTTGGT 59.285 45.455 0.00 0.00 0.00 3.67
545 2201 3.139584 AGTTACTAAGGGGCTGTTTGGTT 59.860 43.478 0.00 0.00 0.00 3.67
546 2202 2.287977 ACTAAGGGGCTGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
547 2203 1.780919 ACTAAGGGGCTGTTTGGTTCT 59.219 47.619 0.00 0.00 0.00 3.01
548 2204 2.224793 ACTAAGGGGCTGTTTGGTTCTC 60.225 50.000 0.00 0.00 0.00 2.87
550 2206 0.111253 AGGGGCTGTTTGGTTCTCAG 59.889 55.000 0.00 0.00 0.00 3.35
554 2210 0.312102 GCTGTTTGGTTCTCAGCCAC 59.688 55.000 5.25 0.00 45.76 5.01
555 2211 1.679139 CTGTTTGGTTCTCAGCCACA 58.321 50.000 0.00 0.00 35.46 4.17
556 2212 1.334869 CTGTTTGGTTCTCAGCCACAC 59.665 52.381 0.00 0.00 37.25 3.82
559 2215 0.550914 TTGGTTCTCAGCCACACCTT 59.449 50.000 0.00 0.00 35.46 3.50
560 2216 0.179020 TGGTTCTCAGCCACACCTTG 60.179 55.000 0.00 0.00 0.00 3.61
561 2217 1.518903 GGTTCTCAGCCACACCTTGC 61.519 60.000 0.00 0.00 0.00 4.01
562 2218 1.228245 TTCTCAGCCACACCTTGCC 60.228 57.895 0.00 0.00 0.00 4.52
564 2220 1.303888 CTCAGCCACACCTTGCCAT 60.304 57.895 0.00 0.00 0.00 4.40
565 2221 0.035152 CTCAGCCACACCTTGCCATA 60.035 55.000 0.00 0.00 0.00 2.74
566 2222 0.322456 TCAGCCACACCTTGCCATAC 60.322 55.000 0.00 0.00 0.00 2.39
567 2223 0.322816 CAGCCACACCTTGCCATACT 60.323 55.000 0.00 0.00 0.00 2.12
568 2224 0.405585 AGCCACACCTTGCCATACTT 59.594 50.000 0.00 0.00 0.00 2.24
569 2225 1.203050 AGCCACACCTTGCCATACTTT 60.203 47.619 0.00 0.00 0.00 2.66
570 2226 1.067635 GCCACACCTTGCCATACTTTG 60.068 52.381 0.00 0.00 0.00 2.77
572 2228 1.067635 CACACCTTGCCATACTTTGCC 60.068 52.381 0.00 0.00 0.00 4.52
573 2229 1.255882 CACCTTGCCATACTTTGCCA 58.744 50.000 0.00 0.00 0.00 4.92
575 2231 1.255882 CCTTGCCATACTTTGCCACA 58.744 50.000 0.00 0.00 0.00 4.17
578 2234 0.112218 TGCCATACTTTGCCACACCT 59.888 50.000 0.00 0.00 0.00 4.00
579 2235 1.352687 TGCCATACTTTGCCACACCTA 59.647 47.619 0.00 0.00 0.00 3.08
580 2236 2.224892 TGCCATACTTTGCCACACCTAA 60.225 45.455 0.00 0.00 0.00 2.69
582 2238 2.752903 CCATACTTTGCCACACCTAACC 59.247 50.000 0.00 0.00 0.00 2.85
583 2239 3.561313 CCATACTTTGCCACACCTAACCT 60.561 47.826 0.00 0.00 0.00 3.50
598 2254 5.324784 CCTAACCTTAGGCAAATTTGACC 57.675 43.478 20.60 19.31 43.43 4.02
599 2255 4.770010 CCTAACCTTAGGCAAATTTGACCA 59.230 41.667 20.60 3.83 43.43 4.02
601 2257 4.871933 ACCTTAGGCAAATTTGACCAAG 57.128 40.909 21.32 21.32 36.67 3.61
602 2258 4.223144 ACCTTAGGCAAATTTGACCAAGT 58.777 39.130 24.65 13.94 36.67 3.16
603 2259 5.390387 ACCTTAGGCAAATTTGACCAAGTA 58.610 37.500 24.65 8.65 36.67 2.24
605 2261 6.015434 ACCTTAGGCAAATTTGACCAAGTAAG 60.015 38.462 24.65 21.00 36.67 2.34
606 2262 4.257267 AGGCAAATTTGACCAAGTAAGC 57.743 40.909 20.60 0.87 36.67 3.09
607 2263 3.897505 AGGCAAATTTGACCAAGTAAGCT 59.102 39.130 20.60 0.00 36.67 3.74
608 2264 5.076873 AGGCAAATTTGACCAAGTAAGCTA 58.923 37.500 20.60 0.00 36.67 3.32
609 2265 5.183904 AGGCAAATTTGACCAAGTAAGCTAG 59.816 40.000 20.60 0.00 36.67 3.42
611 2267 5.048013 GCAAATTTGACCAAGTAAGCTAGGT 60.048 40.000 22.31 0.00 37.00 3.08
612 2268 6.381801 CAAATTTGACCAAGTAAGCTAGGTG 58.618 40.000 13.08 0.00 33.77 4.00
613 2269 4.699925 TTTGACCAAGTAAGCTAGGTGT 57.300 40.909 0.00 0.00 33.77 4.16
615 2271 4.699925 TGACCAAGTAAGCTAGGTGTTT 57.300 40.909 0.00 0.00 33.77 2.83
616 2272 4.385825 TGACCAAGTAAGCTAGGTGTTTG 58.614 43.478 0.00 1.01 33.77 2.93
617 2273 3.751518 ACCAAGTAAGCTAGGTGTTTGG 58.248 45.455 21.45 21.45 39.49 3.28
618 2274 3.137728 ACCAAGTAAGCTAGGTGTTTGGT 59.862 43.478 22.36 22.36 41.28 3.67
619 2275 4.142038 CCAAGTAAGCTAGGTGTTTGGTT 58.858 43.478 17.62 0.00 31.33 3.67
626 2282 4.467198 GCTAGGTGTTTGGTTCTAGCTA 57.533 45.455 12.31 0.00 46.49 3.32
627 2283 4.182339 GCTAGGTGTTTGGTTCTAGCTAC 58.818 47.826 12.31 0.00 46.49 3.58
629 2285 4.004196 AGGTGTTTGGTTCTAGCTACAC 57.996 45.455 3.96 3.96 33.98 2.90
630 2286 3.072211 GGTGTTTGGTTCTAGCTACACC 58.928 50.000 13.79 13.79 41.16 4.16
631 2287 3.244457 GGTGTTTGGTTCTAGCTACACCT 60.244 47.826 19.41 0.00 42.76 4.00
633 2289 5.511888 GGTGTTTGGTTCTAGCTACACCTAA 60.512 44.000 19.41 14.11 42.76 2.69
634 2290 5.638234 GTGTTTGGTTCTAGCTACACCTAAG 59.362 44.000 15.51 0.00 31.02 2.18
635 2291 5.176592 GTTTGGTTCTAGCTACACCTAAGG 58.823 45.833 15.51 0.00 0.00 2.69
636 2292 2.764572 TGGTTCTAGCTACACCTAAGGC 59.235 50.000 15.51 0.00 0.00 4.35
638 2294 3.197116 GGTTCTAGCTACACCTAAGGCAA 59.803 47.826 9.37 0.00 0.00 4.52
639 2295 4.434520 GTTCTAGCTACACCTAAGGCAAG 58.565 47.826 0.00 0.00 0.00 4.01
640 2296 3.977312 TCTAGCTACACCTAAGGCAAGA 58.023 45.455 0.00 0.00 0.00 3.02
642 2298 4.962995 TCTAGCTACACCTAAGGCAAGAAT 59.037 41.667 0.00 0.00 0.00 2.40
643 2299 4.576330 AGCTACACCTAAGGCAAGAATT 57.424 40.909 0.00 0.00 0.00 2.17
644 2300 4.923415 AGCTACACCTAAGGCAAGAATTT 58.077 39.130 0.00 0.00 0.00 1.82
645 2301 5.325239 AGCTACACCTAAGGCAAGAATTTT 58.675 37.500 0.00 0.00 0.00 1.82
646 2302 5.775195 AGCTACACCTAAGGCAAGAATTTTT 59.225 36.000 0.00 0.00 0.00 1.94
668 2324 4.584638 TTATGAGCAGTAAACCCCACAT 57.415 40.909 0.00 0.00 0.00 3.21
670 2326 1.423541 TGAGCAGTAAACCCCACATGT 59.576 47.619 0.00 0.00 0.00 3.21
671 2327 2.084546 GAGCAGTAAACCCCACATGTC 58.915 52.381 0.00 0.00 0.00 3.06
672 2328 1.423541 AGCAGTAAACCCCACATGTCA 59.576 47.619 0.00 0.00 0.00 3.58
673 2329 2.041620 AGCAGTAAACCCCACATGTCAT 59.958 45.455 0.00 0.00 0.00 3.06
675 2331 3.627577 GCAGTAAACCCCACATGTCATAG 59.372 47.826 0.00 0.00 0.00 2.23
676 2332 4.625324 GCAGTAAACCCCACATGTCATAGA 60.625 45.833 0.00 0.00 0.00 1.98
677 2333 4.876107 CAGTAAACCCCACATGTCATAGAC 59.124 45.833 0.00 0.00 0.00 2.59
678 2334 4.534500 AGTAAACCCCACATGTCATAGACA 59.466 41.667 0.00 1.95 46.90 3.41
691 2347 6.494893 TGTCATAGACATAAAAAGTGTGGC 57.505 37.500 0.00 0.00 37.67 5.01
693 2349 6.488344 TGTCATAGACATAAAAAGTGTGGCAA 59.512 34.615 0.00 0.00 37.67 4.52
694 2350 7.023575 GTCATAGACATAAAAAGTGTGGCAAG 58.976 38.462 0.00 0.00 32.09 4.01
695 2351 6.939730 TCATAGACATAAAAAGTGTGGCAAGA 59.060 34.615 0.00 0.00 0.00 3.02
696 2352 7.611467 TCATAGACATAAAAAGTGTGGCAAGAT 59.389 33.333 0.00 0.00 0.00 2.40
698 2354 6.681777 AGACATAAAAAGTGTGGCAAGATTC 58.318 36.000 0.00 0.00 0.00 2.52
699 2355 5.783111 ACATAAAAAGTGTGGCAAGATTCC 58.217 37.500 0.00 0.00 0.00 3.01
700 2356 3.751479 AAAAAGTGTGGCAAGATTCCC 57.249 42.857 0.00 0.00 0.00 3.97
701 2357 2.683211 AAAGTGTGGCAAGATTCCCT 57.317 45.000 0.00 0.00 0.00 4.20
702 2358 2.683211 AAGTGTGGCAAGATTCCCTT 57.317 45.000 0.00 0.00 34.91 3.95
703 2359 3.806949 AAGTGTGGCAAGATTCCCTTA 57.193 42.857 0.00 0.00 32.86 2.69
704 2360 3.356529 AGTGTGGCAAGATTCCCTTAG 57.643 47.619 0.00 0.00 32.86 2.18
705 2361 2.025887 AGTGTGGCAAGATTCCCTTAGG 60.026 50.000 0.00 0.00 32.86 2.69
706 2362 1.340991 TGTGGCAAGATTCCCTTAGGC 60.341 52.381 0.00 0.00 32.86 3.93
707 2363 0.998928 TGGCAAGATTCCCTTAGGCA 59.001 50.000 0.00 0.00 36.71 4.75
708 2364 1.357420 TGGCAAGATTCCCTTAGGCAA 59.643 47.619 0.00 0.00 36.41 4.52
709 2365 2.027385 GGCAAGATTCCCTTAGGCAAG 58.973 52.381 0.00 0.00 32.86 4.01
711 2367 2.685388 GCAAGATTCCCTTAGGCAAGTC 59.315 50.000 0.00 0.00 32.86 3.01
713 2369 4.335416 CAAGATTCCCTTAGGCAAGTCAA 58.665 43.478 0.00 0.00 32.86 3.18
714 2370 4.657814 AGATTCCCTTAGGCAAGTCAAA 57.342 40.909 0.00 0.00 0.00 2.69
717 2373 4.986054 TTCCCTTAGGCAAGTCAAAGTA 57.014 40.909 0.00 0.00 0.00 2.24
718 2374 5.514500 TTCCCTTAGGCAAGTCAAAGTAT 57.486 39.130 0.00 0.00 0.00 2.12
719 2375 4.843728 TCCCTTAGGCAAGTCAAAGTATG 58.156 43.478 0.00 0.00 0.00 2.39
720 2376 3.947834 CCCTTAGGCAAGTCAAAGTATGG 59.052 47.826 0.00 0.00 0.00 2.74
721 2377 3.378427 CCTTAGGCAAGTCAAAGTATGGC 59.622 47.826 0.00 0.00 38.51 4.40
723 2379 5.428253 CTTAGGCAAGTCAAAGTATGGCTA 58.572 41.667 4.08 4.08 45.30 3.93
724 2380 4.301072 AGGCAAGTCAAAGTATGGCTAA 57.699 40.909 0.00 0.00 45.30 3.09
725 2381 4.860022 AGGCAAGTCAAAGTATGGCTAAT 58.140 39.130 0.00 0.00 45.30 1.73
728 2384 7.062957 AGGCAAGTCAAAGTATGGCTAATAAT 58.937 34.615 0.00 0.00 45.30 1.28
729 2385 7.561356 AGGCAAGTCAAAGTATGGCTAATAATT 59.439 33.333 0.00 0.00 45.30 1.40
730 2386 8.197439 GGCAAGTCAAAGTATGGCTAATAATTT 58.803 33.333 0.00 1.31 45.30 1.82
744 2400 9.456147 TGGCTAATAATTTAAGCAACTCAACTA 57.544 29.630 8.17 0.00 0.00 2.24
752 2408 3.214696 AGCAACTCAACTAAGGCAAGT 57.785 42.857 0.00 0.00 0.00 3.16
753 2409 2.880890 AGCAACTCAACTAAGGCAAGTG 59.119 45.455 0.00 0.00 0.00 3.16
754 2410 2.618709 GCAACTCAACTAAGGCAAGTGT 59.381 45.455 0.00 0.00 0.00 3.55
755 2411 3.548818 GCAACTCAACTAAGGCAAGTGTG 60.549 47.826 0.00 0.00 0.00 3.82
756 2412 2.851195 ACTCAACTAAGGCAAGTGTGG 58.149 47.619 0.00 0.00 0.00 4.17
767 2423 3.799137 GCAAGTGTGGCAAAAATCATG 57.201 42.857 0.00 0.00 0.00 3.07
768 2424 3.132925 GCAAGTGTGGCAAAAATCATGT 58.867 40.909 0.00 0.00 0.00 3.21
769 2425 3.059461 GCAAGTGTGGCAAAAATCATGTG 60.059 43.478 0.00 0.00 0.00 3.21
770 2426 3.389925 AGTGTGGCAAAAATCATGTGG 57.610 42.857 0.00 0.00 0.00 4.17
771 2427 1.799994 GTGTGGCAAAAATCATGTGGC 59.200 47.619 0.00 0.00 38.26 5.01
773 2429 2.924757 TGGCAAAAATCATGTGGCAA 57.075 40.000 6.99 0.00 43.91 4.52
774 2430 3.420300 TGGCAAAAATCATGTGGCAAT 57.580 38.095 6.99 0.00 43.91 3.56
777 2433 6.231258 TGGCAAAAATCATGTGGCAATATA 57.769 33.333 6.99 0.00 43.91 0.86
875 2612 6.439636 TCATCCTTGGTATAATCTTCCCAG 57.560 41.667 0.00 0.00 0.00 4.45
1023 3781 2.576615 GCTTCTCCCTTGTTCTTGTGT 58.423 47.619 0.00 0.00 0.00 3.72
1093 3854 1.144969 CGACGGTAAGCAAAGCTTCA 58.855 50.000 7.62 0.00 46.77 3.02
1208 4001 4.247258 ACGTTAACCGATCTGCATGTTAA 58.753 39.130 0.00 0.00 40.70 2.01
1424 4222 1.493854 GGGACACCACCACCACCATA 61.494 60.000 0.00 0.00 36.50 2.74
1694 4495 1.073722 CCTGTGCAAGAGCCTCCAA 59.926 57.895 0.00 0.00 41.13 3.53
1946 4750 2.885861 CTCCCGGTTCAGACCTCG 59.114 66.667 0.00 0.00 44.20 4.63
2135 4939 2.038690 CGGGAAGCAGCTCCGTATA 58.961 57.895 13.31 0.00 39.04 1.47
2310 5114 1.346395 ACTTCACCGGATACAGCAACA 59.654 47.619 9.46 0.00 0.00 3.33
2444 5248 0.967380 ATTACGTCGGGTTCCTCGGT 60.967 55.000 0.00 0.00 0.00 4.69
2559 5390 1.040646 CAATCGGGAGCTAGCCTACA 58.959 55.000 12.13 0.00 0.00 2.74
2560 5393 1.041437 AATCGGGAGCTAGCCTACAC 58.959 55.000 12.13 3.64 0.00 2.90
2595 5430 8.204836 AGATCGGTTTGCTTATAACTGTAGAAT 58.795 33.333 0.00 0.00 34.30 2.40
2633 5469 8.602328 CAACTCAATTGTATTCATCAGAGTCTC 58.398 37.037 5.13 0.00 34.32 3.36
2652 5492 9.427821 AGAGTCTCTTACAATATAGGTGATGTT 57.572 33.333 0.00 0.00 0.00 2.71
2674 5514 1.226746 GCGTGACAAGCCAACTAACT 58.773 50.000 1.44 0.00 0.00 2.24
2771 5615 1.077357 ACAGTTCAACACCCCGCAA 60.077 52.632 0.00 0.00 0.00 4.85
2948 5793 2.095567 ACATCGAGCTCAATGTGTTTGC 60.096 45.455 19.39 0.00 34.88 3.68
3075 5920 1.064017 ACAAAGCCAACAGGTCTCCAA 60.064 47.619 0.00 0.00 0.00 3.53
3105 5951 0.036671 GCAACAGCCCGGTACTTAGT 60.037 55.000 0.00 0.00 0.00 2.24
3222 6068 1.538629 TGTCAGGACAGCCATCCCA 60.539 57.895 0.00 0.00 39.91 4.37
3331 6177 0.460284 ATGCGCTTAACCAGAGACCG 60.460 55.000 9.73 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 143 7.176285 TCAACAAAATAAAGCATGCTTCAAC 57.824 32.000 32.01 0.00 34.84 3.18
155 169 7.914465 TGAATTTGGTGTTTAAATGCTTCAAC 58.086 30.769 0.00 0.00 0.00 3.18
308 798 5.889853 ACTAGTAATGACAGTATTCGTGGGA 59.110 40.000 0.00 0.00 0.00 4.37
320 810 4.649674 GGGGATCTCACACTAGTAATGACA 59.350 45.833 0.00 0.00 0.00 3.58
368 1122 2.024751 TGCCCCTTATTTTGGACCCTAC 60.025 50.000 0.00 0.00 0.00 3.18
536 2192 1.334869 GTGTGGCTGAGAACCAAACAG 59.665 52.381 0.00 0.00 43.79 3.16
537 2193 1.388547 GTGTGGCTGAGAACCAAACA 58.611 50.000 0.00 0.00 43.79 2.83
538 2194 0.668535 GGTGTGGCTGAGAACCAAAC 59.331 55.000 0.00 0.00 43.64 2.93
539 2195 0.550914 AGGTGTGGCTGAGAACCAAA 59.449 50.000 0.00 0.00 39.39 3.28
541 2197 0.179020 CAAGGTGTGGCTGAGAACCA 60.179 55.000 0.00 0.00 35.01 3.67
542 2198 1.518903 GCAAGGTGTGGCTGAGAACC 61.519 60.000 0.00 0.00 0.00 3.62
544 2200 4.481195 GCAAGGTGTGGCTGAGAA 57.519 55.556 0.00 0.00 0.00 2.87
552 2208 2.352503 GCAAAGTATGGCAAGGTGTG 57.647 50.000 0.00 0.00 0.00 3.82
561 2217 2.752903 GGTTAGGTGTGGCAAAGTATGG 59.247 50.000 0.00 0.00 0.00 2.74
562 2218 3.686016 AGGTTAGGTGTGGCAAAGTATG 58.314 45.455 0.00 0.00 0.00 2.39
564 2220 3.868619 AAGGTTAGGTGTGGCAAAGTA 57.131 42.857 0.00 0.00 0.00 2.24
565 2221 2.748209 AAGGTTAGGTGTGGCAAAGT 57.252 45.000 0.00 0.00 0.00 2.66
566 2222 3.081804 CCTAAGGTTAGGTGTGGCAAAG 58.918 50.000 7.53 0.00 44.26 2.77
567 2223 3.149005 CCTAAGGTTAGGTGTGGCAAA 57.851 47.619 7.53 0.00 44.26 3.68
568 2224 2.871096 CCTAAGGTTAGGTGTGGCAA 57.129 50.000 7.53 0.00 44.26 4.52
578 2234 5.836358 ACTTGGTCAAATTTGCCTAAGGTTA 59.164 36.000 23.48 6.08 0.00 2.85
579 2235 4.653801 ACTTGGTCAAATTTGCCTAAGGTT 59.346 37.500 23.48 6.48 0.00 3.50
580 2236 4.223144 ACTTGGTCAAATTTGCCTAAGGT 58.777 39.130 23.48 15.80 0.00 3.50
582 2238 5.863935 GCTTACTTGGTCAAATTTGCCTAAG 59.136 40.000 19.74 19.74 0.00 2.18
583 2239 5.538433 AGCTTACTTGGTCAAATTTGCCTAA 59.462 36.000 23.31 13.40 0.00 2.69
587 2243 5.402398 CCTAGCTTACTTGGTCAAATTTGC 58.598 41.667 13.54 8.47 34.45 3.68
597 2253 3.751518 ACCAAACACCTAGCTTACTTGG 58.248 45.455 0.00 0.00 43.65 3.61
598 2254 5.063880 AGAACCAAACACCTAGCTTACTTG 58.936 41.667 0.00 0.00 0.00 3.16
599 2255 5.306114 AGAACCAAACACCTAGCTTACTT 57.694 39.130 0.00 0.00 0.00 2.24
601 2257 4.630505 GCTAGAACCAAACACCTAGCTTAC 59.369 45.833 11.64 0.00 46.27 2.34
602 2258 4.828829 GCTAGAACCAAACACCTAGCTTA 58.171 43.478 11.64 0.00 46.27 3.09
603 2259 3.676093 GCTAGAACCAAACACCTAGCTT 58.324 45.455 11.64 0.00 46.27 3.74
606 2262 5.169295 GTGTAGCTAGAACCAAACACCTAG 58.831 45.833 0.00 0.00 32.94 3.02
607 2263 5.143376 GTGTAGCTAGAACCAAACACCTA 57.857 43.478 0.00 0.00 32.94 3.08
608 2264 4.004196 GTGTAGCTAGAACCAAACACCT 57.996 45.455 0.00 0.00 32.94 4.00
611 2267 5.279809 CCTTAGGTGTAGCTAGAACCAAACA 60.280 44.000 21.94 3.30 36.37 2.83
612 2268 5.176592 CCTTAGGTGTAGCTAGAACCAAAC 58.823 45.833 21.94 0.74 36.37 2.93
613 2269 4.323257 GCCTTAGGTGTAGCTAGAACCAAA 60.323 45.833 21.94 9.03 36.37 3.28
615 2271 2.764572 GCCTTAGGTGTAGCTAGAACCA 59.235 50.000 21.94 0.00 36.37 3.67
616 2272 2.764572 TGCCTTAGGTGTAGCTAGAACC 59.235 50.000 15.09 15.09 0.00 3.62
617 2273 4.159879 TCTTGCCTTAGGTGTAGCTAGAAC 59.840 45.833 0.00 0.00 34.86 3.01
618 2274 4.350245 TCTTGCCTTAGGTGTAGCTAGAA 58.650 43.478 0.00 0.00 34.86 2.10
619 2275 3.977312 TCTTGCCTTAGGTGTAGCTAGA 58.023 45.455 0.00 0.00 35.30 2.43
644 2300 5.141182 TGTGGGGTTTACTGCTCATAAAAA 58.859 37.500 0.00 0.00 0.00 1.94
645 2301 4.730966 TGTGGGGTTTACTGCTCATAAAA 58.269 39.130 0.00 0.00 0.00 1.52
646 2302 4.374689 TGTGGGGTTTACTGCTCATAAA 57.625 40.909 0.00 0.00 0.00 1.40
647 2303 4.263727 ACATGTGGGGTTTACTGCTCATAA 60.264 41.667 0.00 0.00 0.00 1.90
650 2306 1.423541 ACATGTGGGGTTTACTGCTCA 59.576 47.619 0.00 0.00 0.00 4.26
651 2307 2.084546 GACATGTGGGGTTTACTGCTC 58.915 52.381 1.15 0.00 0.00 4.26
652 2308 1.423541 TGACATGTGGGGTTTACTGCT 59.576 47.619 1.15 0.00 0.00 4.24
653 2309 1.904287 TGACATGTGGGGTTTACTGC 58.096 50.000 1.15 0.00 0.00 4.40
654 2310 4.876107 GTCTATGACATGTGGGGTTTACTG 59.124 45.833 1.15 0.00 32.09 2.74
655 2311 4.534500 TGTCTATGACATGTGGGGTTTACT 59.466 41.667 1.15 0.00 37.67 2.24
656 2312 4.839121 TGTCTATGACATGTGGGGTTTAC 58.161 43.478 1.15 0.00 37.67 2.01
668 2324 6.000840 TGCCACACTTTTTATGTCTATGACA 58.999 36.000 2.77 2.77 46.90 3.58
670 2326 6.939730 TCTTGCCACACTTTTTATGTCTATGA 59.060 34.615 0.00 0.00 0.00 2.15
671 2327 7.144722 TCTTGCCACACTTTTTATGTCTATG 57.855 36.000 0.00 0.00 0.00 2.23
672 2328 7.944729 ATCTTGCCACACTTTTTATGTCTAT 57.055 32.000 0.00 0.00 0.00 1.98
673 2329 7.094377 GGAATCTTGCCACACTTTTTATGTCTA 60.094 37.037 0.00 0.00 0.00 2.59
675 2331 5.863935 GGAATCTTGCCACACTTTTTATGTC 59.136 40.000 0.00 0.00 0.00 3.06
676 2332 5.279456 GGGAATCTTGCCACACTTTTTATGT 60.279 40.000 0.00 0.00 38.72 2.29
677 2333 5.047092 AGGGAATCTTGCCACACTTTTTATG 60.047 40.000 3.19 0.00 41.75 1.90
678 2334 5.086621 AGGGAATCTTGCCACACTTTTTAT 58.913 37.500 3.19 0.00 41.75 1.40
680 2336 3.308401 AGGGAATCTTGCCACACTTTTT 58.692 40.909 3.19 0.00 41.75 1.94
681 2337 2.962859 AGGGAATCTTGCCACACTTTT 58.037 42.857 3.19 0.00 41.75 2.27
682 2338 2.683211 AGGGAATCTTGCCACACTTT 57.317 45.000 3.19 0.00 41.75 2.66
683 2339 2.683211 AAGGGAATCTTGCCACACTT 57.317 45.000 3.19 0.00 41.75 3.16
684 2340 2.025887 CCTAAGGGAATCTTGCCACACT 60.026 50.000 3.19 0.00 41.75 3.55
685 2341 2.369394 CCTAAGGGAATCTTGCCACAC 58.631 52.381 3.19 0.00 41.75 3.82
686 2342 1.340991 GCCTAAGGGAATCTTGCCACA 60.341 52.381 3.19 0.00 41.75 4.17
687 2343 1.340991 TGCCTAAGGGAATCTTGCCAC 60.341 52.381 3.19 0.00 41.75 5.01
689 2345 2.027385 CTTGCCTAAGGGAATCTTGCC 58.973 52.381 0.00 0.00 39.23 4.52
690 2346 2.685388 GACTTGCCTAAGGGAATCTTGC 59.315 50.000 0.00 0.00 38.26 4.01
691 2347 3.955471 TGACTTGCCTAAGGGAATCTTG 58.045 45.455 0.00 0.00 38.26 3.02
693 2349 4.043435 ACTTTGACTTGCCTAAGGGAATCT 59.957 41.667 0.00 0.00 38.26 2.40
694 2350 4.336280 ACTTTGACTTGCCTAAGGGAATC 58.664 43.478 0.00 0.00 38.26 2.52
695 2351 4.388577 ACTTTGACTTGCCTAAGGGAAT 57.611 40.909 0.00 0.00 38.26 3.01
696 2352 3.876309 ACTTTGACTTGCCTAAGGGAA 57.124 42.857 0.00 0.00 38.26 3.97
698 2354 3.947834 CCATACTTTGACTTGCCTAAGGG 59.052 47.826 0.00 0.00 38.26 3.95
699 2355 3.378427 GCCATACTTTGACTTGCCTAAGG 59.622 47.826 0.00 0.00 38.26 2.69
700 2356 4.265073 AGCCATACTTTGACTTGCCTAAG 58.735 43.478 0.00 0.00 39.86 2.18
701 2357 4.301072 AGCCATACTTTGACTTGCCTAA 57.699 40.909 0.00 0.00 0.00 2.69
702 2358 5.429681 TTAGCCATACTTTGACTTGCCTA 57.570 39.130 0.00 0.00 0.00 3.93
703 2359 2.887151 AGCCATACTTTGACTTGCCT 57.113 45.000 0.00 0.00 0.00 4.75
704 2360 6.693315 TTATTAGCCATACTTTGACTTGCC 57.307 37.500 0.00 0.00 0.00 4.52
714 2370 9.627123 TGAGTTGCTTAAATTATTAGCCATACT 57.373 29.630 0.00 0.00 0.00 2.12
717 2373 8.971073 AGTTGAGTTGCTTAAATTATTAGCCAT 58.029 29.630 0.00 0.00 0.00 4.40
718 2374 8.348285 AGTTGAGTTGCTTAAATTATTAGCCA 57.652 30.769 0.00 0.00 0.00 4.75
723 2379 8.802267 TGCCTTAGTTGAGTTGCTTAAATTATT 58.198 29.630 0.00 0.00 0.00 1.40
724 2380 8.348285 TGCCTTAGTTGAGTTGCTTAAATTAT 57.652 30.769 0.00 0.00 0.00 1.28
725 2381 7.753309 TGCCTTAGTTGAGTTGCTTAAATTA 57.247 32.000 0.00 0.00 0.00 1.40
728 2384 5.592688 ACTTGCCTTAGTTGAGTTGCTTAAA 59.407 36.000 0.00 0.00 0.00 1.52
729 2385 5.008613 CACTTGCCTTAGTTGAGTTGCTTAA 59.991 40.000 0.00 0.00 0.00 1.85
730 2386 4.515191 CACTTGCCTTAGTTGAGTTGCTTA 59.485 41.667 0.00 0.00 0.00 3.09
731 2387 3.316308 CACTTGCCTTAGTTGAGTTGCTT 59.684 43.478 0.00 0.00 0.00 3.91
733 2389 2.618709 ACACTTGCCTTAGTTGAGTTGC 59.381 45.455 0.00 0.00 0.00 4.17
734 2390 3.003689 CCACACTTGCCTTAGTTGAGTTG 59.996 47.826 0.00 0.00 0.00 3.16
735 2391 3.214328 CCACACTTGCCTTAGTTGAGTT 58.786 45.455 0.00 0.00 0.00 3.01
742 2398 3.451141 TTTTTGCCACACTTGCCTTAG 57.549 42.857 0.00 0.00 0.00 2.18
744 2400 2.170187 TGATTTTTGCCACACTTGCCTT 59.830 40.909 0.00 0.00 0.00 4.35
746 2402 2.237393 TGATTTTTGCCACACTTGCC 57.763 45.000 0.00 0.00 0.00 4.52
747 2403 3.059461 CACATGATTTTTGCCACACTTGC 60.059 43.478 0.00 0.00 0.00 4.01
752 2408 1.415289 TGCCACATGATTTTTGCCACA 59.585 42.857 0.00 0.00 0.00 4.17
753 2409 2.166821 TGCCACATGATTTTTGCCAC 57.833 45.000 0.00 0.00 0.00 5.01
754 2410 2.924757 TTGCCACATGATTTTTGCCA 57.075 40.000 0.00 0.00 0.00 4.92
755 2411 6.148150 CCATATATTGCCACATGATTTTTGCC 59.852 38.462 0.00 0.00 0.00 4.52
756 2412 6.347888 GCCATATATTGCCACATGATTTTTGC 60.348 38.462 0.00 0.00 0.00 3.68
758 2414 6.828788 TGCCATATATTGCCACATGATTTTT 58.171 32.000 0.00 0.00 0.00 1.94
761 2417 6.422344 TTTGCCATATATTGCCACATGATT 57.578 33.333 0.00 0.00 0.00 2.57
762 2418 6.422344 TTTTGCCATATATTGCCACATGAT 57.578 33.333 0.00 0.00 0.00 2.45
763 2419 5.866159 TTTTGCCATATATTGCCACATGA 57.134 34.783 0.00 0.00 0.00 3.07
764 2420 7.874016 ACTATTTTTGCCATATATTGCCACATG 59.126 33.333 6.34 0.00 0.00 3.21
766 2422 7.069208 TGACTATTTTTGCCATATATTGCCACA 59.931 33.333 6.34 0.00 0.00 4.17
767 2423 7.382218 GTGACTATTTTTGCCATATATTGCCAC 59.618 37.037 6.34 1.06 0.00 5.01
768 2424 7.069208 TGTGACTATTTTTGCCATATATTGCCA 59.931 33.333 6.34 0.00 0.00 4.92
769 2425 7.432869 TGTGACTATTTTTGCCATATATTGCC 58.567 34.615 6.34 0.00 0.00 4.52
770 2426 8.870160 TTGTGACTATTTTTGCCATATATTGC 57.130 30.769 1.83 1.83 0.00 3.56
773 2429 9.592196 AGGATTGTGACTATTTTTGCCATATAT 57.408 29.630 0.00 0.00 0.00 0.86
774 2430 8.995027 AGGATTGTGACTATTTTTGCCATATA 57.005 30.769 0.00 0.00 0.00 0.86
777 2433 6.400568 CAAGGATTGTGACTATTTTTGCCAT 58.599 36.000 0.00 0.00 42.34 4.40
875 2612 5.007724 ACTGAACAATCACGAAAAAGGAGAC 59.992 40.000 0.00 0.00 0.00 3.36
1023 3781 2.367567 GCCAAATACGACCAGGAGGATA 59.632 50.000 0.00 0.00 38.69 2.59
1156 3931 1.760029 TGCCATGCTCAATTCATGCAT 59.240 42.857 0.00 0.00 46.74 3.96
1208 4001 2.161808 CCGAGTGTCATACGACTGTTCT 59.838 50.000 0.00 0.00 43.06 3.01
1370 4168 1.202452 CGGCTCATGATGTAGTCTGCA 60.202 52.381 0.00 0.00 0.00 4.41
1677 4478 1.093159 GATTGGAGGCTCTTGCACAG 58.907 55.000 15.23 0.00 41.91 3.66
2135 4939 1.597027 CTCGAACACCTTTGGCGGT 60.597 57.895 0.00 0.00 37.93 5.68
2214 5018 2.668280 GGAACGCGGACTGCAGTTC 61.668 63.158 22.65 19.14 46.62 3.01
2310 5114 2.351276 GACCTTGGGCACGGTGAT 59.649 61.111 13.29 0.00 32.62 3.06
2372 5176 1.003812 CCATCCAACAGAACCCCGTTA 59.996 52.381 0.00 0.00 0.00 3.18
2419 5223 3.559069 AGGAACCCGACGTAATCATCTA 58.441 45.455 0.00 0.00 0.00 1.98
2444 5248 4.221924 TCCAACGTTCTCATCTGGACATTA 59.778 41.667 0.00 0.00 31.19 1.90
2633 5469 7.639850 CACGCAAAACATCACCTATATTGTAAG 59.360 37.037 0.00 0.00 0.00 2.34
2652 5492 1.669604 TAGTTGGCTTGTCACGCAAA 58.330 45.000 3.49 0.00 36.53 3.68
2835 5679 0.464373 CGACATCATGACCAAGGGGG 60.464 60.000 0.00 0.00 44.81 5.40
2886 5731 1.334160 TCAGTTGGGTCAGCTTCGTA 58.666 50.000 0.00 0.00 0.00 3.43
2948 5793 4.695231 GGTGCAGCACAAGCGCAG 62.695 66.667 26.78 3.78 45.64 5.18
3075 5920 2.186826 GCTGTTGCCAACGTGGTCT 61.187 57.895 2.68 0.00 40.46 3.85
3105 5951 1.587043 CTCCCGTTCGAGTGCTGAGA 61.587 60.000 0.00 0.00 0.00 3.27
3136 5982 3.427573 TGTCTCATGGTCCTCTAAACGA 58.572 45.455 0.00 0.00 0.00 3.85
3218 6064 2.631160 ATATTGACGCGGATTTGGGA 57.369 45.000 12.47 0.00 0.00 4.37
3222 6068 5.238432 TCATTGCTTATATTGACGCGGATTT 59.762 36.000 12.47 0.00 0.00 2.17
3331 6177 3.124921 CGCCCCGTGATGTTCACC 61.125 66.667 2.26 0.00 44.20 4.02
3421 6269 1.585267 CTACCGCAGCATTGTTGGCA 61.585 55.000 2.57 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.