Multiple sequence alignment - TraesCS7D01G187100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G187100 chr7D 100.000 8604 0 0 1 8604 139840197 139831594 0.000000e+00 15889.0
1 TraesCS7D01G187100 chr7B 95.945 6733 173 34 1313 8003 104769221 104762547 0.000000e+00 10829.0
2 TraesCS7D01G187100 chr7B 91.117 698 35 7 605 1277 104769912 104769217 0.000000e+00 920.0
3 TraesCS7D01G187100 chr7B 93.609 532 27 4 1 526 104770452 104769922 0.000000e+00 787.0
4 TraesCS7D01G187100 chr7B 91.349 289 20 3 8314 8599 104762464 104762178 2.910000e-104 390.0
5 TraesCS7D01G187100 chr7A 95.099 4550 172 24 3491 8003 139521093 139516558 0.000000e+00 7119.0
6 TraesCS7D01G187100 chr7A 96.328 2206 49 12 1313 3492 139523396 139521197 0.000000e+00 3596.0
7 TraesCS7D01G187100 chr7A 89.248 1330 77 23 1 1277 139524708 139523392 0.000000e+00 1604.0
8 TraesCS7D01G187100 chr7A 94.848 330 16 1 8276 8604 139516547 139516218 1.660000e-141 514.0
9 TraesCS7D01G187100 chr7A 92.908 282 18 2 8002 8282 533691380 533691100 8.040000e-110 409.0
10 TraesCS7D01G187100 chr2D 93.165 278 19 0 8002 8279 316767829 316767552 8.040000e-110 409.0
11 TraesCS7D01G187100 chr2D 92.857 280 17 3 8005 8282 376491777 376491499 3.740000e-108 403.0
12 TraesCS7D01G187100 chr2D 92.806 278 20 0 8002 8279 561397993 561397716 3.740000e-108 403.0
13 TraesCS7D01G187100 chr1D 92.806 278 20 0 8002 8279 8517240 8517517 3.740000e-108 403.0
14 TraesCS7D01G187100 chr1D 92.780 277 20 0 8003 8279 8479368 8479644 1.350000e-107 401.0
15 TraesCS7D01G187100 chrUn 92.780 277 20 0 8003 8279 384475981 384476257 1.350000e-107 401.0
16 TraesCS7D01G187100 chr6D 92.446 278 21 0 8002 8279 452258362 452258085 1.740000e-106 398.0
17 TraesCS7D01G187100 chr6A 91.873 283 23 0 8002 8284 464388568 464388850 6.260000e-106 396.0
18 TraesCS7D01G187100 chr3B 100.000 28 0 0 8565 8592 335041078 335041051 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G187100 chr7D 139831594 139840197 8603 True 15889.00 15889 100.00000 1 8604 1 chr7D.!!$R1 8603
1 TraesCS7D01G187100 chr7B 104762178 104770452 8274 True 3231.50 10829 93.00500 1 8599 4 chr7B.!!$R1 8598
2 TraesCS7D01G187100 chr7A 139516218 139524708 8490 True 3208.25 7119 93.88075 1 8604 4 chr7A.!!$R2 8603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.178981 AATCCAGCCATGATTCGGGG 60.179 55.000 0.00 0.0 0.00 5.73 F
434 452 0.542467 TGATGCTGGGTGCCACATTT 60.542 50.000 0.00 0.0 42.00 2.32 F
562 606 1.238439 ATGCTGAAGGTTCGGTTGTG 58.762 50.000 0.63 0.0 35.96 3.33 F
1448 1525 2.154462 AGCAGTGTAACATGGCTTGAC 58.846 47.619 7.45 0.0 41.43 3.18 F
1761 1840 4.998051 AGTGTGTAATGGAATGGTCCTTT 58.002 39.130 0.00 0.0 45.22 3.11 F
2841 2940 2.746947 TAGCCACCAGGTCTCCAGCA 62.747 60.000 0.00 0.0 37.19 4.41 F
4025 4230 2.441001 CTCAGATGGGGGAATAGCTGTT 59.559 50.000 0.00 0.0 32.49 3.16 F
4610 4818 0.244994 CAGCCGTAGTGACTTCAGCT 59.755 55.000 0.00 0.0 0.00 4.24 F
4873 5081 0.339859 ACCAGACTCATCCCAGCCTA 59.660 55.000 0.00 0.0 0.00 3.93 F
4934 5142 1.276705 TGTGGCTATGACTTTACGGCA 59.723 47.619 0.00 0.0 0.00 5.69 F
6511 6719 2.009051 CATTGAACCATAGACGCAGCA 58.991 47.619 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 1436 2.973224 GCATACACGTGAGTTGCAAAAG 59.027 45.455 25.01 0.00 46.40 2.27 R
1538 1615 3.804873 CCACCAAAATGTTGTTAAACCGG 59.195 43.478 0.00 0.00 35.25 5.28 R
1761 1840 4.141937 CCCCGTTGAGTGATAGAAGATGAA 60.142 45.833 0.00 0.00 0.00 2.57 R
2841 2940 3.648339 AGCACGACTGCAATTTTCAAT 57.352 38.095 0.52 0.00 46.97 2.57 R
3684 3889 5.114764 TCTCCATGCATCTGGTTAATTGA 57.885 39.130 6.24 0.00 37.57 2.57 R
4585 4793 0.100682 AGTCACTACGGCTGTATGCG 59.899 55.000 5.70 0.00 44.05 4.73 R
4934 5142 0.538287 GCCCAGAAGTTGACAAGGCT 60.538 55.000 6.62 0.00 36.00 4.58 R
6499 6707 0.573987 CGTGATGTGCTGCGTCTATG 59.426 55.000 0.00 0.00 34.29 2.23 R
6715 6940 1.280421 AGAGGGTGGCATCTCTTTCAC 59.720 52.381 14.80 0.00 37.06 3.18 R
6891 7117 1.230324 GTCAGTTGTTGAGGCCTGTC 58.770 55.000 12.00 0.00 36.21 3.51 R
8011 8257 0.033366 TCGCAGTGCACAAGCTAAGA 59.967 50.000 25.27 15.83 42.74 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 0.178981 AATCCAGCCATGATTCGGGG 60.179 55.000 0.00 0.00 0.00 5.73
192 193 1.069227 GGATTGCGGCCGAAATGTATC 60.069 52.381 35.99 21.58 0.00 2.24
193 194 1.873591 GATTGCGGCCGAAATGTATCT 59.126 47.619 35.99 12.21 0.00 1.98
194 195 2.605837 TTGCGGCCGAAATGTATCTA 57.394 45.000 33.48 0.00 0.00 1.98
213 214 1.841302 ATGCTGGAGCGGTTTCAGGA 61.841 55.000 16.71 15.09 45.83 3.86
216 217 1.089920 CTGGAGCGGTTTCAGGATTG 58.910 55.000 9.97 0.00 0.00 2.67
217 218 0.690192 TGGAGCGGTTTCAGGATTGA 59.310 50.000 0.00 0.00 0.00 2.57
269 272 2.433664 AATCCCGCGTCCACGTTC 60.434 61.111 4.92 0.00 42.22 3.95
401 419 5.988310 TTCGTCCTTACCTCTTTGTATCA 57.012 39.130 0.00 0.00 0.00 2.15
434 452 0.542467 TGATGCTGGGTGCCACATTT 60.542 50.000 0.00 0.00 42.00 2.32
526 548 4.686191 ATCTCCTGCTAAGAGTGATTGG 57.314 45.455 0.00 0.00 32.93 3.16
546 590 8.144478 TGATTGGAGTCTATGTTAGAGTTATGC 58.856 37.037 0.00 0.00 38.54 3.14
547 591 7.661536 TTGGAGTCTATGTTAGAGTTATGCT 57.338 36.000 0.00 0.00 38.54 3.79
548 592 7.043961 TGGAGTCTATGTTAGAGTTATGCTG 57.956 40.000 0.00 0.00 38.54 4.41
549 593 6.833933 TGGAGTCTATGTTAGAGTTATGCTGA 59.166 38.462 0.00 0.00 38.54 4.26
550 594 7.342026 TGGAGTCTATGTTAGAGTTATGCTGAA 59.658 37.037 0.00 0.00 38.54 3.02
551 595 7.865385 GGAGTCTATGTTAGAGTTATGCTGAAG 59.135 40.741 0.00 0.00 38.54 3.02
552 596 7.721402 AGTCTATGTTAGAGTTATGCTGAAGG 58.279 38.462 0.00 0.00 34.92 3.46
553 597 7.343316 AGTCTATGTTAGAGTTATGCTGAAGGT 59.657 37.037 0.00 0.00 34.92 3.50
554 598 7.982354 GTCTATGTTAGAGTTATGCTGAAGGTT 59.018 37.037 0.00 0.00 35.04 3.50
555 599 8.198109 TCTATGTTAGAGTTATGCTGAAGGTTC 58.802 37.037 0.00 0.00 0.00 3.62
556 600 5.168569 TGTTAGAGTTATGCTGAAGGTTCG 58.831 41.667 0.00 0.00 0.00 3.95
562 606 1.238439 ATGCTGAAGGTTCGGTTGTG 58.762 50.000 0.63 0.00 35.96 3.33
591 635 4.270008 ACCAAAGAAAGTTGCAGTACTGT 58.730 39.130 23.44 2.78 0.00 3.55
597 641 4.589374 AGAAAGTTGCAGTACTGTAGGTCT 59.411 41.667 23.44 15.57 0.00 3.85
598 642 5.773680 AGAAAGTTGCAGTACTGTAGGTCTA 59.226 40.000 23.44 1.38 0.00 2.59
599 643 5.388408 AAGTTGCAGTACTGTAGGTCTAC 57.612 43.478 23.44 13.60 36.63 2.59
600 644 3.762823 AGTTGCAGTACTGTAGGTCTACC 59.237 47.826 23.44 4.72 35.26 3.18
601 645 3.444792 TGCAGTACTGTAGGTCTACCA 57.555 47.619 23.44 7.28 38.89 3.25
602 646 3.353557 TGCAGTACTGTAGGTCTACCAG 58.646 50.000 23.44 6.05 38.89 4.00
603 647 3.009805 TGCAGTACTGTAGGTCTACCAGA 59.990 47.826 23.44 0.00 38.89 3.86
739 788 7.171678 AGTGTTTACAGTTGATCTGAAGCTAAC 59.828 37.037 0.00 0.00 46.27 2.34
750 799 2.860735 CTGAAGCTAACGTCAGGCATAC 59.139 50.000 5.38 2.52 45.39 2.39
775 824 2.481568 GCGTGTGTACCTAAAAGTTCCC 59.518 50.000 0.00 0.00 0.00 3.97
778 827 4.153475 CGTGTGTACCTAAAAGTTCCCATG 59.847 45.833 0.00 0.00 0.00 3.66
802 851 5.532406 GGTTTATCTCTTCCATATGCTTGCA 59.468 40.000 0.00 0.00 0.00 4.08
804 853 6.812879 TTATCTCTTCCATATGCTTGCATG 57.187 37.500 17.26 4.00 0.00 4.06
805 854 2.882761 TCTCTTCCATATGCTTGCATGC 59.117 45.455 17.19 17.19 0.00 4.06
810 859 3.143728 TCCATATGCTTGCATGCTGTAG 58.856 45.455 23.31 14.07 0.00 2.74
815 864 4.730949 ATGCTTGCATGCTGTAGAAATT 57.269 36.364 23.31 0.00 0.00 1.82
920 969 3.181459 GGTTTGCCTTTTGTGGTATTGGT 60.181 43.478 0.00 0.00 0.00 3.67
1224 1293 4.614555 TGCCGAATTTGCAACTATACTG 57.385 40.909 0.00 0.00 35.40 2.74
1280 1349 6.739112 TGCTGTATAGTATGAGCACTTAGTG 58.261 40.000 8.18 8.18 36.54 2.74
1281 1350 6.546034 TGCTGTATAGTATGAGCACTTAGTGA 59.454 38.462 17.40 0.00 36.54 3.41
1282 1351 7.081349 GCTGTATAGTATGAGCACTTAGTGAG 58.919 42.308 17.40 0.71 35.23 3.51
1283 1352 7.255312 GCTGTATAGTATGAGCACTTAGTGAGT 60.255 40.741 17.40 1.61 39.89 3.41
1403 1480 4.671508 CGTGTATGCACCCATGTTTACTTG 60.672 45.833 8.45 0.00 42.39 3.16
1415 1492 5.799936 CCATGTTTACTTGCGTATTTTCTGG 59.200 40.000 0.00 0.00 0.00 3.86
1448 1525 2.154462 AGCAGTGTAACATGGCTTGAC 58.846 47.619 7.45 0.00 41.43 3.18
1471 1548 8.097038 TGACCTATTATTGTCTGAATCCTATGC 58.903 37.037 0.00 0.00 32.67 3.14
1499 1576 5.393678 GGAAAACAGAAAACACAAGCAGGTA 60.394 40.000 0.00 0.00 0.00 3.08
1624 1701 8.749354 TCAGAGTACTGAGAGCATGTAAATTAA 58.251 33.333 0.00 0.00 46.55 1.40
1625 1702 9.539825 CAGAGTACTGAGAGCATGTAAATTAAT 57.460 33.333 0.00 0.00 46.03 1.40
1673 1752 5.877012 ACTTATGAAGGCAGTGTATGTGAAG 59.123 40.000 0.00 0.00 0.00 3.02
1756 1835 6.560003 TCTCATAGTGTGTAATGGAATGGT 57.440 37.500 0.00 0.00 0.00 3.55
1761 1840 4.998051 AGTGTGTAATGGAATGGTCCTTT 58.002 39.130 0.00 0.00 45.22 3.11
2165 2252 7.281774 GCATCATAGGATCTTCTGAGAAAAACA 59.718 37.037 0.00 0.00 35.07 2.83
2190 2277 6.105333 TGCATATGCCAAAAGAATAAACACC 58.895 36.000 24.54 0.00 41.18 4.16
2258 2345 9.023962 TCTTGTGCCTATGACTTTATCATTTTT 57.976 29.630 0.00 0.00 46.54 1.94
2477 2573 7.254898 CGGATTAATGTTAGTGCTCATGAACAT 60.255 37.037 1.44 2.42 42.76 2.71
2841 2940 2.746947 TAGCCACCAGGTCTCCAGCA 62.747 60.000 0.00 0.00 37.19 4.41
3072 3171 4.933134 TGGGATTCATGAAAGACAATGGA 58.067 39.130 13.09 0.00 0.00 3.41
3073 3172 5.331906 TGGGATTCATGAAAGACAATGGAA 58.668 37.500 13.09 0.00 0.00 3.53
3076 3175 7.160726 GGGATTCATGAAAGACAATGGAAAAA 58.839 34.615 13.09 0.00 0.00 1.94
3645 3850 4.501559 CACGACGAAACTGTAAGAAGTTGA 59.498 41.667 0.00 0.00 40.28 3.18
3646 3851 4.501921 ACGACGAAACTGTAAGAAGTTGAC 59.498 41.667 0.00 0.00 40.28 3.18
3647 3852 4.501559 CGACGAAACTGTAAGAAGTTGACA 59.498 41.667 0.00 0.00 40.28 3.58
4017 4222 2.694397 CAGATACCTCAGATGGGGGAA 58.306 52.381 3.28 0.00 0.00 3.97
4025 4230 2.441001 CTCAGATGGGGGAATAGCTGTT 59.559 50.000 0.00 0.00 32.49 3.16
4079 4287 4.445453 CAGTAAGTTCATGCAGCTATGGA 58.555 43.478 0.00 0.00 0.00 3.41
4585 4793 3.069586 TCATCGGTATCATGTGGACCTTC 59.930 47.826 10.35 0.00 0.00 3.46
4608 4816 3.439293 CATACAGCCGTAGTGACTTCAG 58.561 50.000 0.00 0.00 0.00 3.02
4610 4818 0.244994 CAGCCGTAGTGACTTCAGCT 59.755 55.000 0.00 0.00 0.00 4.24
4715 4923 3.207778 GAGCTCTCTAAGAGGCTTACGA 58.792 50.000 6.43 0.00 42.54 3.43
4723 4931 5.251764 TCTAAGAGGCTTACGAACTGTACT 58.748 41.667 0.00 0.00 31.20 2.73
4873 5081 0.339859 ACCAGACTCATCCCAGCCTA 59.660 55.000 0.00 0.00 0.00 3.93
4934 5142 1.276705 TGTGGCTATGACTTTACGGCA 59.723 47.619 0.00 0.00 0.00 5.69
5129 5337 5.132816 AGCTAGAGTTTATACTTGGGGCAAT 59.867 40.000 0.00 0.00 33.84 3.56
5185 5393 4.402056 TTGATCGGAATACTCCAACTCC 57.598 45.455 0.00 0.00 42.58 3.85
5527 5735 5.588845 TGATGGAAACCCACATCCTTTATT 58.411 37.500 0.00 0.00 42.09 1.40
5673 5881 7.170965 TCTTCATCATTCAGGAAACTTAAGCT 58.829 34.615 1.29 0.00 40.21 3.74
5954 6162 6.508721 GCGATCCTCGTTTCTTCTAAAGATTG 60.509 42.308 0.00 0.00 42.81 2.67
6330 6538 3.191162 TGGAGTGCAAACATATCAGTTGC 59.809 43.478 0.00 7.33 0.00 4.17
6367 6575 5.702670 CAGAATCTAAAGCTGTCTTGTTCCA 59.297 40.000 0.00 0.00 31.78 3.53
6471 6679 5.689383 AATGCTGACGTACTGAAAACAAT 57.311 34.783 0.00 0.00 0.00 2.71
6499 6707 3.339141 GGAGACCAGAGAACATTGAACC 58.661 50.000 0.00 0.00 0.00 3.62
6511 6719 2.009051 CATTGAACCATAGACGCAGCA 58.991 47.619 0.00 0.00 0.00 4.41
6536 6744 8.547069 CACATCACGGATACAAATTTTGTTTTT 58.453 29.630 19.15 6.03 42.22 1.94
6537 6745 8.547069 ACATCACGGATACAAATTTTGTTTTTG 58.453 29.630 19.15 10.57 42.22 2.44
6638 6853 7.558161 TCAGATGGTATCACAATAAGCTTTG 57.442 36.000 3.20 0.00 0.00 2.77
6891 7117 4.520874 TCTTATCAGAGGCAGGTTAGATCG 59.479 45.833 0.00 0.00 0.00 3.69
6897 7123 0.530870 GGCAGGTTAGATCGACAGGC 60.531 60.000 0.00 6.70 0.00 4.85
7016 7243 0.034896 GGTTTCGCAGAGGAGTTCCA 59.965 55.000 0.28 0.00 38.43 3.53
7022 7249 0.398318 GCAGAGGAGTTCCACCACTT 59.602 55.000 0.28 0.00 38.89 3.16
7451 7681 7.787725 AACTCTACTTATATGCCTTTTTCCG 57.212 36.000 0.00 0.00 0.00 4.30
7559 7789 1.736645 CACCGGCCAACTCTACACG 60.737 63.158 0.00 0.00 0.00 4.49
7657 7887 3.138304 CAGCTAACTGGTGTGTAAAGCA 58.862 45.455 0.00 0.00 40.48 3.91
7756 7987 2.480419 CTGTGAGCGACCAGTTTTTAGG 59.520 50.000 0.00 0.00 0.00 2.69
7757 7988 1.804748 GTGAGCGACCAGTTTTTAGGG 59.195 52.381 0.00 0.00 0.00 3.53
7764 7995 1.202842 ACCAGTTTTTAGGGTGGTCCG 60.203 52.381 0.00 0.00 39.11 4.79
7864 8106 9.784680 TTCTCTCTGTACGACATAAATAGTTTC 57.215 33.333 0.00 0.00 0.00 2.78
7935 8181 4.885907 AGTTGGCTGAAATATCCATGTGAG 59.114 41.667 0.00 0.00 0.00 3.51
7942 8188 7.157347 GCTGAAATATCCATGTGAGATACTCA 58.843 38.462 0.00 0.00 38.25 3.41
8003 8249 4.962995 TGGGTTTCAGGTTGAAAAATGGTA 59.037 37.500 5.86 0.00 46.53 3.25
8004 8250 5.604650 TGGGTTTCAGGTTGAAAAATGGTAT 59.395 36.000 5.86 0.00 46.53 2.73
8005 8251 6.782988 TGGGTTTCAGGTTGAAAAATGGTATA 59.217 34.615 5.86 0.00 46.53 1.47
8007 8253 7.817478 GGGTTTCAGGTTGAAAAATGGTATAAG 59.183 37.037 5.86 0.00 46.53 1.73
8008 8254 8.364894 GGTTTCAGGTTGAAAAATGGTATAAGT 58.635 33.333 5.86 0.00 46.53 2.24
8009 8255 9.406828 GTTTCAGGTTGAAAAATGGTATAAGTC 57.593 33.333 5.86 0.00 46.53 3.01
8010 8256 8.698973 TTCAGGTTGAAAAATGGTATAAGTCA 57.301 30.769 0.00 0.00 32.71 3.41
8011 8257 8.877864 TCAGGTTGAAAAATGGTATAAGTCAT 57.122 30.769 0.00 0.00 0.00 3.06
8012 8258 8.956426 TCAGGTTGAAAAATGGTATAAGTCATC 58.044 33.333 0.00 0.00 0.00 2.92
8013 8259 8.960591 CAGGTTGAAAAATGGTATAAGTCATCT 58.039 33.333 0.00 0.00 0.00 2.90
8014 8260 9.533831 AGGTTGAAAAATGGTATAAGTCATCTT 57.466 29.630 0.00 0.00 37.65 2.40
8018 8264 9.905713 TGAAAAATGGTATAAGTCATCTTAGCT 57.094 29.630 0.00 0.00 39.17 3.32
8021 8267 9.686683 AAAATGGTATAAGTCATCTTAGCTTGT 57.313 29.630 0.00 0.00 39.17 3.16
8022 8268 8.668510 AATGGTATAAGTCATCTTAGCTTGTG 57.331 34.615 0.00 0.00 39.17 3.33
8023 8269 6.049149 TGGTATAAGTCATCTTAGCTTGTGC 58.951 40.000 0.00 0.00 39.17 4.57
8024 8270 6.049149 GGTATAAGTCATCTTAGCTTGTGCA 58.951 40.000 0.00 0.00 39.17 4.57
8025 8271 6.018669 GGTATAAGTCATCTTAGCTTGTGCAC 60.019 42.308 10.75 10.75 39.17 4.57
8026 8272 3.692257 AGTCATCTTAGCTTGTGCACT 57.308 42.857 19.41 0.00 42.74 4.40
8027 8273 3.332919 AGTCATCTTAGCTTGTGCACTG 58.667 45.455 19.41 11.95 42.74 3.66
8028 8274 2.079158 TCATCTTAGCTTGTGCACTGC 58.921 47.619 19.41 20.84 42.74 4.40
8029 8275 1.081892 ATCTTAGCTTGTGCACTGCG 58.918 50.000 19.41 9.81 42.74 5.18
8030 8276 0.033366 TCTTAGCTTGTGCACTGCGA 59.967 50.000 19.41 15.18 42.74 5.10
8031 8277 0.164647 CTTAGCTTGTGCACTGCGAC 59.835 55.000 19.41 3.17 42.74 5.19
8032 8278 1.227999 TTAGCTTGTGCACTGCGACC 61.228 55.000 19.41 0.64 42.74 4.79
8033 8279 2.376228 TAGCTTGTGCACTGCGACCA 62.376 55.000 19.41 7.88 42.74 4.02
8034 8280 2.833533 GCTTGTGCACTGCGACCAA 61.834 57.895 19.41 0.62 39.41 3.67
8035 8281 1.280746 CTTGTGCACTGCGACCAAG 59.719 57.895 19.41 7.48 0.00 3.61
8036 8282 2.121564 CTTGTGCACTGCGACCAAGG 62.122 60.000 19.41 0.00 32.09 3.61
8037 8283 4.030452 GTGCACTGCGACCAAGGC 62.030 66.667 10.32 0.00 0.00 4.35
8040 8286 2.664851 CACTGCGACCAAGGCGAA 60.665 61.111 0.00 0.00 0.00 4.70
8041 8287 2.357517 ACTGCGACCAAGGCGAAG 60.358 61.111 0.00 0.00 40.27 3.79
8042 8288 3.121030 CTGCGACCAAGGCGAAGG 61.121 66.667 0.00 0.00 30.73 3.46
8043 8289 4.697756 TGCGACCAAGGCGAAGGG 62.698 66.667 0.00 0.00 0.00 3.95
8044 8290 4.388499 GCGACCAAGGCGAAGGGA 62.388 66.667 0.00 0.00 0.00 4.20
8045 8291 2.345991 CGACCAAGGCGAAGGGAA 59.654 61.111 0.00 0.00 0.00 3.97
8046 8292 1.302192 CGACCAAGGCGAAGGGAAA 60.302 57.895 0.00 0.00 0.00 3.13
8047 8293 0.887387 CGACCAAGGCGAAGGGAAAA 60.887 55.000 0.00 0.00 0.00 2.29
8048 8294 1.324383 GACCAAGGCGAAGGGAAAAA 58.676 50.000 0.00 0.00 0.00 1.94
8049 8295 1.000607 GACCAAGGCGAAGGGAAAAAC 60.001 52.381 0.00 0.00 0.00 2.43
8050 8296 0.039527 CCAAGGCGAAGGGAAAAACG 60.040 55.000 0.00 0.00 0.00 3.60
8051 8297 0.948678 CAAGGCGAAGGGAAAAACGA 59.051 50.000 0.00 0.00 0.00 3.85
8052 8298 1.069227 CAAGGCGAAGGGAAAAACGAG 60.069 52.381 0.00 0.00 0.00 4.18
8053 8299 0.395312 AGGCGAAGGGAAAAACGAGA 59.605 50.000 0.00 0.00 0.00 4.04
8054 8300 0.796927 GGCGAAGGGAAAAACGAGAG 59.203 55.000 0.00 0.00 0.00 3.20
8055 8301 1.607251 GGCGAAGGGAAAAACGAGAGA 60.607 52.381 0.00 0.00 0.00 3.10
8056 8302 2.140717 GCGAAGGGAAAAACGAGAGAA 58.859 47.619 0.00 0.00 0.00 2.87
8057 8303 2.096367 GCGAAGGGAAAAACGAGAGAAC 60.096 50.000 0.00 0.00 0.00 3.01
8058 8304 3.391049 CGAAGGGAAAAACGAGAGAACT 58.609 45.455 0.00 0.00 0.00 3.01
8059 8305 3.808174 CGAAGGGAAAAACGAGAGAACTT 59.192 43.478 0.00 0.00 0.00 2.66
8060 8306 4.986659 CGAAGGGAAAAACGAGAGAACTTA 59.013 41.667 0.00 0.00 0.00 2.24
8061 8307 5.464389 CGAAGGGAAAAACGAGAGAACTTAA 59.536 40.000 0.00 0.00 0.00 1.85
8062 8308 6.147328 CGAAGGGAAAAACGAGAGAACTTAAT 59.853 38.462 0.00 0.00 0.00 1.40
8063 8309 6.803154 AGGGAAAAACGAGAGAACTTAATG 57.197 37.500 0.00 0.00 0.00 1.90
8064 8310 6.296803 AGGGAAAAACGAGAGAACTTAATGT 58.703 36.000 0.00 0.00 0.00 2.71
8065 8311 6.427242 AGGGAAAAACGAGAGAACTTAATGTC 59.573 38.462 0.00 0.00 0.00 3.06
8066 8312 6.427242 GGGAAAAACGAGAGAACTTAATGTCT 59.573 38.462 0.00 0.00 0.00 3.41
8067 8313 7.041303 GGGAAAAACGAGAGAACTTAATGTCTT 60.041 37.037 0.00 0.00 0.00 3.01
8068 8314 8.343366 GGAAAAACGAGAGAACTTAATGTCTTT 58.657 33.333 0.00 0.00 0.00 2.52
8069 8315 9.717892 GAAAAACGAGAGAACTTAATGTCTTTT 57.282 29.630 0.00 0.00 0.00 2.27
8071 8317 9.503427 AAAACGAGAGAACTTAATGTCTTTTTG 57.497 29.630 0.00 0.00 0.00 2.44
8072 8318 6.659776 ACGAGAGAACTTAATGTCTTTTTGC 58.340 36.000 0.00 0.00 0.00 3.68
8073 8319 6.483640 ACGAGAGAACTTAATGTCTTTTTGCT 59.516 34.615 0.00 0.00 0.00 3.91
8074 8320 7.656137 ACGAGAGAACTTAATGTCTTTTTGCTA 59.344 33.333 0.00 0.00 0.00 3.49
8075 8321 8.495949 CGAGAGAACTTAATGTCTTTTTGCTAA 58.504 33.333 0.00 0.00 0.00 3.09
8112 8358 5.550232 TGCAATGAACTTACTACTGCATG 57.450 39.130 0.00 0.00 33.65 4.06
8113 8359 5.003160 TGCAATGAACTTACTACTGCATGT 58.997 37.500 0.00 0.00 33.65 3.21
8114 8360 5.122239 TGCAATGAACTTACTACTGCATGTC 59.878 40.000 0.00 0.00 33.65 3.06
8115 8361 5.447818 GCAATGAACTTACTACTGCATGTCC 60.448 44.000 0.00 0.00 0.00 4.02
8116 8362 5.683876 ATGAACTTACTACTGCATGTCCT 57.316 39.130 0.00 0.00 0.00 3.85
8117 8363 4.820897 TGAACTTACTACTGCATGTCCTG 58.179 43.478 0.00 0.00 0.00 3.86
8118 8364 4.283467 TGAACTTACTACTGCATGTCCTGT 59.717 41.667 0.00 0.00 0.00 4.00
8119 8365 4.891992 ACTTACTACTGCATGTCCTGTT 57.108 40.909 0.00 0.00 0.00 3.16
8120 8366 5.228945 ACTTACTACTGCATGTCCTGTTT 57.771 39.130 0.00 0.00 0.00 2.83
8121 8367 4.997395 ACTTACTACTGCATGTCCTGTTTG 59.003 41.667 0.00 0.00 0.00 2.93
8122 8368 3.492102 ACTACTGCATGTCCTGTTTGT 57.508 42.857 0.00 0.00 0.00 2.83
8123 8369 3.820557 ACTACTGCATGTCCTGTTTGTT 58.179 40.909 0.00 0.00 0.00 2.83
8124 8370 4.968259 ACTACTGCATGTCCTGTTTGTTA 58.032 39.130 0.00 0.00 0.00 2.41
8125 8371 4.997395 ACTACTGCATGTCCTGTTTGTTAG 59.003 41.667 0.00 0.00 0.00 2.34
8126 8372 3.820557 ACTGCATGTCCTGTTTGTTAGT 58.179 40.909 0.00 0.00 0.00 2.24
8127 8373 3.815401 ACTGCATGTCCTGTTTGTTAGTC 59.185 43.478 0.00 0.00 0.00 2.59
8128 8374 4.067896 CTGCATGTCCTGTTTGTTAGTCT 58.932 43.478 0.00 0.00 0.00 3.24
8129 8375 4.065088 TGCATGTCCTGTTTGTTAGTCTC 58.935 43.478 0.00 0.00 0.00 3.36
8130 8376 4.065088 GCATGTCCTGTTTGTTAGTCTCA 58.935 43.478 0.00 0.00 0.00 3.27
8131 8377 4.515191 GCATGTCCTGTTTGTTAGTCTCAA 59.485 41.667 0.00 0.00 0.00 3.02
8132 8378 5.334414 GCATGTCCTGTTTGTTAGTCTCAAG 60.334 44.000 0.00 0.00 0.00 3.02
8133 8379 5.353394 TGTCCTGTTTGTTAGTCTCAAGT 57.647 39.130 0.00 0.00 0.00 3.16
8134 8380 5.357257 TGTCCTGTTTGTTAGTCTCAAGTC 58.643 41.667 0.00 0.00 0.00 3.01
8135 8381 5.105106 TGTCCTGTTTGTTAGTCTCAAGTCA 60.105 40.000 0.00 0.00 0.00 3.41
8136 8382 5.992217 GTCCTGTTTGTTAGTCTCAAGTCAT 59.008 40.000 0.00 0.00 0.00 3.06
8137 8383 6.483640 GTCCTGTTTGTTAGTCTCAAGTCATT 59.516 38.462 0.00 0.00 0.00 2.57
8138 8384 7.656137 GTCCTGTTTGTTAGTCTCAAGTCATTA 59.344 37.037 0.00 0.00 0.00 1.90
8139 8385 8.208224 TCCTGTTTGTTAGTCTCAAGTCATTAA 58.792 33.333 0.00 0.00 0.00 1.40
8140 8386 8.836413 CCTGTTTGTTAGTCTCAAGTCATTAAA 58.164 33.333 0.00 0.00 0.00 1.52
8147 8393 9.118236 GTTAGTCTCAAGTCATTAAAAACATGC 57.882 33.333 0.00 0.00 0.00 4.06
8148 8394 7.275888 AGTCTCAAGTCATTAAAAACATGCA 57.724 32.000 0.00 0.00 0.00 3.96
8149 8395 7.141363 AGTCTCAAGTCATTAAAAACATGCAC 58.859 34.615 0.00 0.00 0.00 4.57
8150 8396 6.086765 GTCTCAAGTCATTAAAAACATGCACG 59.913 38.462 0.00 0.00 0.00 5.34
8151 8397 5.826586 TCAAGTCATTAAAAACATGCACGT 58.173 33.333 0.00 0.00 0.00 4.49
8152 8398 6.269315 TCAAGTCATTAAAAACATGCACGTT 58.731 32.000 0.00 0.00 0.00 3.99
8153 8399 6.754209 TCAAGTCATTAAAAACATGCACGTTT 59.246 30.769 4.81 4.81 40.79 3.60
8154 8400 6.747659 AGTCATTAAAAACATGCACGTTTC 57.252 33.333 11.79 0.00 38.13 2.78
8155 8401 6.269315 AGTCATTAAAAACATGCACGTTTCA 58.731 32.000 11.79 0.00 38.13 2.69
8156 8402 6.198216 AGTCATTAAAAACATGCACGTTTCAC 59.802 34.615 11.79 2.61 38.13 3.18
8157 8403 6.020281 GTCATTAAAAACATGCACGTTTCACA 60.020 34.615 11.79 0.00 38.13 3.58
8158 8404 6.699204 TCATTAAAAACATGCACGTTTCACAT 59.301 30.769 11.79 1.23 38.13 3.21
8159 8405 6.503616 TTAAAAACATGCACGTTTCACATC 57.496 33.333 11.79 0.00 38.13 3.06
8160 8406 3.988379 AAACATGCACGTTTCACATCT 57.012 38.095 4.81 0.00 33.90 2.90
8161 8407 3.542712 AACATGCACGTTTCACATCTC 57.457 42.857 0.00 0.00 0.00 2.75
8162 8408 2.771089 ACATGCACGTTTCACATCTCT 58.229 42.857 0.00 0.00 0.00 3.10
8163 8409 3.141398 ACATGCACGTTTCACATCTCTT 58.859 40.909 0.00 0.00 0.00 2.85
8164 8410 4.314961 ACATGCACGTTTCACATCTCTTA 58.685 39.130 0.00 0.00 0.00 2.10
8165 8411 4.937620 ACATGCACGTTTCACATCTCTTAT 59.062 37.500 0.00 0.00 0.00 1.73
8166 8412 5.412594 ACATGCACGTTTCACATCTCTTATT 59.587 36.000 0.00 0.00 0.00 1.40
8167 8413 5.281693 TGCACGTTTCACATCTCTTATTG 57.718 39.130 0.00 0.00 0.00 1.90
8168 8414 4.154015 TGCACGTTTCACATCTCTTATTGG 59.846 41.667 0.00 0.00 0.00 3.16
8169 8415 4.154195 GCACGTTTCACATCTCTTATTGGT 59.846 41.667 0.00 0.00 0.00 3.67
8170 8416 5.334879 GCACGTTTCACATCTCTTATTGGTT 60.335 40.000 0.00 0.00 0.00 3.67
8171 8417 6.079763 CACGTTTCACATCTCTTATTGGTTG 58.920 40.000 0.00 0.00 0.00 3.77
8172 8418 5.995282 ACGTTTCACATCTCTTATTGGTTGA 59.005 36.000 0.00 0.00 0.00 3.18
8173 8419 6.655003 ACGTTTCACATCTCTTATTGGTTGAT 59.345 34.615 0.00 0.00 0.00 2.57
8174 8420 7.822334 ACGTTTCACATCTCTTATTGGTTGATA 59.178 33.333 0.00 0.00 0.00 2.15
8175 8421 8.830580 CGTTTCACATCTCTTATTGGTTGATAT 58.169 33.333 0.00 0.00 0.00 1.63
8176 8422 9.941664 GTTTCACATCTCTTATTGGTTGATATG 57.058 33.333 0.00 0.00 0.00 1.78
8177 8423 9.685276 TTTCACATCTCTTATTGGTTGATATGT 57.315 29.630 0.00 0.00 30.96 2.29
8178 8424 8.893219 TCACATCTCTTATTGGTTGATATGTC 57.107 34.615 0.00 0.00 29.24 3.06
8179 8425 8.485392 TCACATCTCTTATTGGTTGATATGTCA 58.515 33.333 0.00 0.00 29.24 3.58
8180 8426 8.554528 CACATCTCTTATTGGTTGATATGTCAC 58.445 37.037 0.00 0.00 33.11 3.67
8181 8427 7.439356 ACATCTCTTATTGGTTGATATGTCACG 59.561 37.037 0.00 0.00 33.11 4.35
8182 8428 7.107639 TCTCTTATTGGTTGATATGTCACGA 57.892 36.000 0.00 0.00 33.11 4.35
8183 8429 7.552459 TCTCTTATTGGTTGATATGTCACGAA 58.448 34.615 0.00 0.00 33.11 3.85
8184 8430 8.038351 TCTCTTATTGGTTGATATGTCACGAAA 58.962 33.333 0.00 0.00 33.11 3.46
8185 8431 7.970384 TCTTATTGGTTGATATGTCACGAAAC 58.030 34.615 0.00 0.00 33.11 2.78
8186 8432 7.604545 TCTTATTGGTTGATATGTCACGAAACA 59.395 33.333 0.00 0.00 33.11 2.83
8187 8433 6.567687 ATTGGTTGATATGTCACGAAACAA 57.432 33.333 0.00 0.00 33.11 2.83
8188 8434 5.605564 TGGTTGATATGTCACGAAACAAG 57.394 39.130 0.00 0.00 33.11 3.16
8189 8435 5.301555 TGGTTGATATGTCACGAAACAAGA 58.698 37.500 0.00 0.00 33.11 3.02
8190 8436 5.760743 TGGTTGATATGTCACGAAACAAGAA 59.239 36.000 0.00 0.00 33.11 2.52
8191 8437 6.261158 TGGTTGATATGTCACGAAACAAGAAA 59.739 34.615 0.00 0.00 33.11 2.52
8192 8438 6.577427 GGTTGATATGTCACGAAACAAGAAAC 59.423 38.462 0.00 0.00 33.11 2.78
8193 8439 5.911421 TGATATGTCACGAAACAAGAAACG 58.089 37.500 0.00 0.00 31.81 3.60
8194 8440 5.692654 TGATATGTCACGAAACAAGAAACGA 59.307 36.000 0.00 0.00 31.81 3.85
8195 8441 3.918258 TGTCACGAAACAAGAAACGAG 57.082 42.857 0.00 0.00 0.00 4.18
8196 8442 3.513662 TGTCACGAAACAAGAAACGAGA 58.486 40.909 0.00 0.00 0.00 4.04
8197 8443 3.927758 TGTCACGAAACAAGAAACGAGAA 59.072 39.130 0.00 0.00 0.00 2.87
8198 8444 4.032445 TGTCACGAAACAAGAAACGAGAAG 59.968 41.667 0.00 0.00 0.00 2.85
8199 8445 3.554324 TCACGAAACAAGAAACGAGAAGG 59.446 43.478 0.00 0.00 0.00 3.46
8200 8446 2.870411 ACGAAACAAGAAACGAGAAGGG 59.130 45.455 0.00 0.00 0.00 3.95
8201 8447 3.128349 CGAAACAAGAAACGAGAAGGGA 58.872 45.455 0.00 0.00 0.00 4.20
8202 8448 3.184581 CGAAACAAGAAACGAGAAGGGAG 59.815 47.826 0.00 0.00 0.00 4.30
8203 8449 3.840124 AACAAGAAACGAGAAGGGAGT 57.160 42.857 0.00 0.00 0.00 3.85
8204 8450 3.840124 ACAAGAAACGAGAAGGGAGTT 57.160 42.857 0.00 0.00 0.00 3.01
8205 8451 4.950205 ACAAGAAACGAGAAGGGAGTTA 57.050 40.909 0.00 0.00 0.00 2.24
8206 8452 5.286267 ACAAGAAACGAGAAGGGAGTTAA 57.714 39.130 0.00 0.00 0.00 2.01
8207 8453 5.866207 ACAAGAAACGAGAAGGGAGTTAAT 58.134 37.500 0.00 0.00 0.00 1.40
8208 8454 5.701290 ACAAGAAACGAGAAGGGAGTTAATG 59.299 40.000 0.00 0.00 0.00 1.90
8209 8455 5.485209 AGAAACGAGAAGGGAGTTAATGT 57.515 39.130 0.00 0.00 0.00 2.71
8210 8456 6.600882 AGAAACGAGAAGGGAGTTAATGTA 57.399 37.500 0.00 0.00 0.00 2.29
8211 8457 6.396450 AGAAACGAGAAGGGAGTTAATGTAC 58.604 40.000 0.00 0.00 0.00 2.90
8212 8458 4.732672 ACGAGAAGGGAGTTAATGTACC 57.267 45.455 0.00 0.00 0.00 3.34
8213 8459 3.129988 ACGAGAAGGGAGTTAATGTACCG 59.870 47.826 0.00 0.00 0.00 4.02
8214 8460 3.129988 CGAGAAGGGAGTTAATGTACCGT 59.870 47.826 0.00 0.00 0.00 4.83
8215 8461 4.430908 GAGAAGGGAGTTAATGTACCGTG 58.569 47.826 0.00 0.00 0.00 4.94
8216 8462 2.685850 AGGGAGTTAATGTACCGTGC 57.314 50.000 0.00 0.00 0.00 5.34
8217 8463 1.208776 AGGGAGTTAATGTACCGTGCC 59.791 52.381 0.00 0.00 0.00 5.01
8218 8464 1.208776 GGGAGTTAATGTACCGTGCCT 59.791 52.381 0.00 0.00 0.00 4.75
8219 8465 2.431782 GGGAGTTAATGTACCGTGCCTA 59.568 50.000 0.00 0.00 0.00 3.93
8220 8466 3.118665 GGGAGTTAATGTACCGTGCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
8221 8467 4.117685 GGAGTTAATGTACCGTGCCTAAG 58.882 47.826 0.00 0.00 0.00 2.18
8222 8468 4.382362 GGAGTTAATGTACCGTGCCTAAGT 60.382 45.833 0.00 0.00 0.00 2.24
8223 8469 4.501071 AGTTAATGTACCGTGCCTAAGTG 58.499 43.478 0.00 0.00 0.00 3.16
8224 8470 4.020839 AGTTAATGTACCGTGCCTAAGTGT 60.021 41.667 0.00 0.00 0.00 3.55
8225 8471 3.412237 AATGTACCGTGCCTAAGTGTT 57.588 42.857 0.00 0.00 0.00 3.32
8226 8472 2.914695 TGTACCGTGCCTAAGTGTTT 57.085 45.000 0.00 0.00 0.00 2.83
8227 8473 3.196939 TGTACCGTGCCTAAGTGTTTT 57.803 42.857 0.00 0.00 0.00 2.43
8228 8474 2.873472 TGTACCGTGCCTAAGTGTTTTG 59.127 45.455 0.00 0.00 0.00 2.44
8229 8475 2.335316 ACCGTGCCTAAGTGTTTTGA 57.665 45.000 0.00 0.00 0.00 2.69
8230 8476 2.218603 ACCGTGCCTAAGTGTTTTGAG 58.781 47.619 0.00 0.00 0.00 3.02
8231 8477 2.158871 ACCGTGCCTAAGTGTTTTGAGA 60.159 45.455 0.00 0.00 0.00 3.27
8232 8478 3.074412 CCGTGCCTAAGTGTTTTGAGAT 58.926 45.455 0.00 0.00 0.00 2.75
8233 8479 3.502211 CCGTGCCTAAGTGTTTTGAGATT 59.498 43.478 0.00 0.00 0.00 2.40
8234 8480 4.693566 CCGTGCCTAAGTGTTTTGAGATTA 59.306 41.667 0.00 0.00 0.00 1.75
8235 8481 5.354234 CCGTGCCTAAGTGTTTTGAGATTAT 59.646 40.000 0.00 0.00 0.00 1.28
8236 8482 6.128007 CCGTGCCTAAGTGTTTTGAGATTATT 60.128 38.462 0.00 0.00 0.00 1.40
8237 8483 7.305474 CGTGCCTAAGTGTTTTGAGATTATTT 58.695 34.615 0.00 0.00 0.00 1.40
8238 8484 7.271223 CGTGCCTAAGTGTTTTGAGATTATTTG 59.729 37.037 0.00 0.00 0.00 2.32
8239 8485 7.542130 GTGCCTAAGTGTTTTGAGATTATTTGG 59.458 37.037 0.00 0.00 0.00 3.28
8240 8486 7.232534 TGCCTAAGTGTTTTGAGATTATTTGGT 59.767 33.333 0.00 0.00 0.00 3.67
8241 8487 8.088365 GCCTAAGTGTTTTGAGATTATTTGGTT 58.912 33.333 0.00 0.00 0.00 3.67
8242 8488 9.981114 CCTAAGTGTTTTGAGATTATTTGGTTT 57.019 29.630 0.00 0.00 0.00 3.27
8246 8492 9.665719 AGTGTTTTGAGATTATTTGGTTTTTGT 57.334 25.926 0.00 0.00 0.00 2.83
8252 8498 9.757227 TTGAGATTATTTGGTTTTTGTAAGGTG 57.243 29.630 0.00 0.00 0.00 4.00
8253 8499 9.137459 TGAGATTATTTGGTTTTTGTAAGGTGA 57.863 29.630 0.00 0.00 0.00 4.02
8254 8500 9.406828 GAGATTATTTGGTTTTTGTAAGGTGAC 57.593 33.333 0.00 0.00 0.00 3.67
8271 8517 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
8274 8520 2.040813 ACTTACACACCTAGACGGAGGA 59.959 50.000 7.23 0.00 39.15 3.71
8291 8537 3.376540 GAGGAAGTATTACTGCTCTGCG 58.623 50.000 1.81 0.00 41.39 5.18
8292 8538 1.861575 GGAAGTATTACTGCTCTGCGC 59.138 52.381 0.00 0.00 39.77 6.09
8325 8606 4.008074 TGCTTAGTTTCAGGTTCTCTGG 57.992 45.455 0.00 0.00 43.53 3.86
8335 8616 3.094572 CAGGTTCTCTGGGCAATTCAAT 58.905 45.455 0.00 0.00 39.76 2.57
8375 8656 8.877864 TTTGTTCAGGTAATGGTGAGATTTAT 57.122 30.769 0.00 0.00 0.00 1.40
8378 8659 5.376625 TCAGGTAATGGTGAGATTTATGCC 58.623 41.667 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 1.696063 CCCGAATCATGGCTGGATTT 58.304 50.000 5.84 0.00 35.23 2.17
118 119 1.300481 GGATTACCTCAAAGCTCGGC 58.700 55.000 0.00 0.00 0.00 5.54
192 193 1.293924 CTGAAACCGCTCCAGCATAG 58.706 55.000 0.00 0.00 42.21 2.23
193 194 0.107703 CCTGAAACCGCTCCAGCATA 60.108 55.000 0.00 0.00 42.21 3.14
194 195 1.377725 CCTGAAACCGCTCCAGCAT 60.378 57.895 0.00 0.00 42.21 3.79
401 419 1.616865 AGCATCAGCATTGCACAAGTT 59.383 42.857 11.91 0.00 45.49 2.66
515 537 7.617723 ACTCTAACATAGACTCCAATCACTCTT 59.382 37.037 0.00 0.00 0.00 2.85
526 548 7.865385 CCTTCAGCATAACTCTAACATAGACTC 59.135 40.741 0.00 0.00 0.00 3.36
546 590 3.775661 AAAACACAACCGAACCTTCAG 57.224 42.857 0.00 0.00 0.00 3.02
591 635 5.910003 AGATAGTGGTAGTCTGGTAGACCTA 59.090 44.000 5.41 1.03 46.18 3.08
597 641 7.123383 TCAATCAAGATAGTGGTAGTCTGGTA 58.877 38.462 0.00 0.00 0.00 3.25
598 642 5.958380 TCAATCAAGATAGTGGTAGTCTGGT 59.042 40.000 0.00 0.00 0.00 4.00
599 643 6.471233 TCAATCAAGATAGTGGTAGTCTGG 57.529 41.667 0.00 0.00 0.00 3.86
600 644 8.954950 AATTCAATCAAGATAGTGGTAGTCTG 57.045 34.615 0.00 0.00 0.00 3.51
686 735 0.604780 CCGACATGGCATCTGGGATC 60.605 60.000 0.00 0.00 0.00 3.36
687 736 1.348008 ACCGACATGGCATCTGGGAT 61.348 55.000 10.59 0.00 43.94 3.85
739 788 1.447838 ACGCCAAGTATGCCTGACG 60.448 57.895 0.00 0.00 0.00 4.35
750 799 3.135994 ACTTTTAGGTACACACGCCAAG 58.864 45.455 0.00 0.00 0.00 3.61
755 804 3.731089 TGGGAACTTTTAGGTACACACG 58.269 45.455 0.00 0.00 0.00 4.49
758 807 4.659115 ACCATGGGAACTTTTAGGTACAC 58.341 43.478 18.09 0.00 0.00 2.90
775 824 7.591165 CAAGCATATGGAAGAGATAAACCATG 58.409 38.462 4.56 0.00 42.16 3.66
778 827 5.532406 TGCAAGCATATGGAAGAGATAAACC 59.468 40.000 4.56 0.00 0.00 3.27
802 851 7.707624 TCATTTCTTCCAATTTCTACAGCAT 57.292 32.000 0.00 0.00 0.00 3.79
804 853 7.820648 TCTTCATTTCTTCCAATTTCTACAGC 58.179 34.615 0.00 0.00 0.00 4.40
810 859 9.513727 GCTAGATTCTTCATTTCTTCCAATTTC 57.486 33.333 0.00 0.00 0.00 2.17
815 864 6.715280 ACAGCTAGATTCTTCATTTCTTCCA 58.285 36.000 0.00 0.00 0.00 3.53
920 969 3.420893 CAGCCACATAACTTCCTCCAAA 58.579 45.455 0.00 0.00 0.00 3.28
1016 1065 3.055819 CCTCTCAAAGGGATCGTTCTTCA 60.056 47.826 0.00 0.00 42.03 3.02
1179 1248 5.946942 AATGAGAATACTGAGGAAGCAGA 57.053 39.130 0.00 0.00 39.20 4.26
1181 1250 5.124457 GCAAAATGAGAATACTGAGGAAGCA 59.876 40.000 0.00 0.00 0.00 3.91
1241 1310 7.039270 ACTATACAGCACAACATCGTGATTAA 58.961 34.615 0.00 0.00 39.34 1.40
1242 1311 6.569780 ACTATACAGCACAACATCGTGATTA 58.430 36.000 0.00 0.00 39.34 1.75
1248 1317 5.117745 GCTCATACTATACAGCACAACATCG 59.882 44.000 0.00 0.00 0.00 3.84
1305 1374 8.251750 TGTGTATTAAATAGAAGTGTGAGCAC 57.748 34.615 0.00 0.00 45.57 4.40
1306 1375 9.448438 AATGTGTATTAAATAGAAGTGTGAGCA 57.552 29.630 0.00 0.00 0.00 4.26
1367 1436 2.973224 GCATACACGTGAGTTGCAAAAG 59.027 45.455 25.01 0.00 46.40 2.27
1403 1480 4.632538 AGGTTATTGCCAGAAAATACGC 57.367 40.909 0.00 0.00 0.00 4.42
1415 1492 3.923017 ACACTGCTTGAAGGTTATTGC 57.077 42.857 0.00 0.00 0.00 3.56
1448 1525 7.397221 TGGCATAGGATTCAGACAATAATAGG 58.603 38.462 0.00 0.00 0.00 2.57
1471 1548 4.270808 GCTTGTGTTTTCTGTTTTCCATGG 59.729 41.667 4.97 4.97 0.00 3.66
1537 1614 4.434520 CACCAAAATGTTGTTAAACCGGT 58.565 39.130 0.00 0.00 35.25 5.28
1538 1615 3.804873 CCACCAAAATGTTGTTAAACCGG 59.195 43.478 0.00 0.00 35.25 5.28
1599 1676 8.932945 TTAATTTACATGCTCTCAGTACTCTG 57.067 34.615 0.00 0.00 42.54 3.35
1607 1684 9.565090 AGAATGCTATTAATTTACATGCTCTCA 57.435 29.630 0.00 0.00 0.00 3.27
1646 1725 6.149308 TCACATACACTGCCTTCATAAGTTTG 59.851 38.462 0.00 0.00 0.00 2.93
1673 1752 8.159344 AGTTAATCCTCTTATGTTAATGCTGC 57.841 34.615 0.00 0.00 0.00 5.25
1737 1816 5.975988 AGGACCATTCCATTACACACTAT 57.024 39.130 0.00 0.00 45.72 2.12
1756 1835 6.813649 CGTTGAGTGATAGAAGATGAAAAGGA 59.186 38.462 0.00 0.00 0.00 3.36
1761 1840 4.141937 CCCCGTTGAGTGATAGAAGATGAA 60.142 45.833 0.00 0.00 0.00 2.57
2165 2252 6.762661 GGTGTTTATTCTTTTGGCATATGCAT 59.237 34.615 28.07 13.81 44.36 3.96
2217 2304 7.716799 AGGCACAAGATTTACCAATGAAATA 57.283 32.000 0.00 0.00 0.00 1.40
2258 2345 4.362677 AGCCTCATCCTAGGAACAGTAAA 58.637 43.478 17.30 0.00 39.15 2.01
2632 2728 6.942532 AAGCTTTGATTGACTTTGACTGTA 57.057 33.333 0.00 0.00 0.00 2.74
2841 2940 3.648339 AGCACGACTGCAATTTTCAAT 57.352 38.095 0.52 0.00 46.97 2.57
3510 3715 7.703058 AAACTAATGGAAGGTTCATAACAGG 57.297 36.000 0.00 0.00 0.00 4.00
3684 3889 5.114764 TCTCCATGCATCTGGTTAATTGA 57.885 39.130 6.24 0.00 37.57 2.57
4017 4222 8.256356 ACTCTGAGGTTATTATCAACAGCTAT 57.744 34.615 9.85 0.00 0.00 2.97
4079 4287 5.925506 TTGCATCAAAATCATCACCTGAT 57.074 34.783 0.00 0.00 46.87 2.90
4585 4793 0.100682 AGTCACTACGGCTGTATGCG 59.899 55.000 5.70 0.00 44.05 4.73
4608 4816 0.746659 AAAGTGAACAACTGGCCAGC 59.253 50.000 33.06 16.33 39.81 4.85
4610 4818 1.480137 CCAAAAGTGAACAACTGGCCA 59.520 47.619 4.71 4.71 39.81 5.36
4715 4923 1.949525 CCACAAGCTGCAAGTACAGTT 59.050 47.619 1.02 0.00 39.96 3.16
4723 4931 1.438399 CAAGCACCACAAGCTGCAA 59.562 52.632 1.02 0.00 42.53 4.08
4873 5081 4.207891 AGCTTACGAAGTGATTCCACAT 57.792 40.909 0.00 0.00 45.73 3.21
4934 5142 0.538287 GCCCAGAAGTTGACAAGGCT 60.538 55.000 6.62 0.00 36.00 4.58
5185 5393 5.048504 TGCTTATCTTTCAAAGCCTCAACAG 60.049 40.000 4.75 0.00 46.01 3.16
5673 5881 5.398581 CCTTGGAATGGCCTATACTACCAAA 60.399 44.000 3.32 0.00 36.94 3.28
5954 6162 5.869888 AGAACTGTCATCCTACGAAAACATC 59.130 40.000 0.00 0.00 0.00 3.06
6330 6538 8.592809 AGCTTTAGATTCTGTCCTAGGATTATG 58.407 37.037 16.27 5.89 0.00 1.90
6367 6575 2.163810 ATAATGCACTGGCCCAATGT 57.836 45.000 0.00 0.00 40.13 2.71
6499 6707 0.573987 CGTGATGTGCTGCGTCTATG 59.426 55.000 0.00 0.00 34.29 2.23
6511 6719 8.547069 CAAAAACAAAATTTGTATCCGTGATGT 58.453 29.630 12.11 0.00 44.59 3.06
6536 6744 3.512724 GGGACCTACTAGTTGTAAGCACA 59.487 47.826 0.00 0.00 0.00 4.57
6537 6745 3.512724 TGGGACCTACTAGTTGTAAGCAC 59.487 47.826 0.00 0.00 0.00 4.40
6638 6853 5.163814 GGTTATCAGCATCGATTCATAAGCC 60.164 44.000 0.00 0.00 0.00 4.35
6641 6857 9.554395 TTTAAGGTTATCAGCATCGATTCATAA 57.446 29.630 0.00 0.00 0.00 1.90
6715 6940 1.280421 AGAGGGTGGCATCTCTTTCAC 59.720 52.381 14.80 0.00 37.06 3.18
6841 7066 7.309560 GGCTTGGGTATTTTCTACTTTTGCTTA 60.310 37.037 0.00 0.00 0.00 3.09
6891 7117 1.230324 GTCAGTTGTTGAGGCCTGTC 58.770 55.000 12.00 0.00 36.21 3.51
6897 7123 3.689161 TGTCAGTTTGTCAGTTGTTGAGG 59.311 43.478 0.00 0.00 36.21 3.86
7016 7243 4.503991 GGAGTTCTTCAGATCACAAGTGGT 60.504 45.833 0.00 0.00 0.00 4.16
7022 7249 3.242867 ACCAGGAGTTCTTCAGATCACA 58.757 45.455 0.00 0.00 0.00 3.58
7114 7342 9.496873 TTTCGGTTATACTTCTGATCTGAAAAA 57.503 29.630 14.97 7.42 0.00 1.94
7451 7681 4.552767 CGATCAATAGGCAAATCCACGAAC 60.553 45.833 0.00 0.00 37.29 3.95
7559 7789 3.006323 CCAGTCAGGATACCATACTGCTC 59.994 52.174 13.38 0.00 41.17 4.26
7654 7884 4.768968 ACATTTGCCAGAAGAAGTTATGCT 59.231 37.500 0.00 0.00 0.00 3.79
7657 7887 7.831193 AGATGTACATTTGCCAGAAGAAGTTAT 59.169 33.333 10.30 0.00 0.00 1.89
7764 7995 2.787601 CATACATGCATCTGTTGGGC 57.212 50.000 0.00 0.00 0.00 5.36
7864 8106 7.332678 CCAAAGAGAAAAAGGAAATATTGCCTG 59.667 37.037 16.31 0.16 34.00 4.85
7935 8181 4.212214 GCAAGTCCGATCCATTTGAGTATC 59.788 45.833 0.00 0.00 0.00 2.24
7942 8188 1.281867 TCCAGCAAGTCCGATCCATTT 59.718 47.619 0.00 0.00 0.00 2.32
8003 8249 5.583854 CAGTGCACAAGCTAAGATGACTTAT 59.416 40.000 21.04 0.00 42.74 1.73
8004 8250 4.931601 CAGTGCACAAGCTAAGATGACTTA 59.068 41.667 21.04 0.00 42.74 2.24
8005 8251 3.750130 CAGTGCACAAGCTAAGATGACTT 59.250 43.478 21.04 0.00 42.74 3.01
8007 8253 2.159599 GCAGTGCACAAGCTAAGATGAC 60.160 50.000 21.04 0.00 42.74 3.06
8008 8254 2.079158 GCAGTGCACAAGCTAAGATGA 58.921 47.619 21.04 0.00 42.74 2.92
8009 8255 1.201998 CGCAGTGCACAAGCTAAGATG 60.202 52.381 25.27 11.54 42.74 2.90
8010 8256 1.081892 CGCAGTGCACAAGCTAAGAT 58.918 50.000 25.27 0.00 42.74 2.40
8011 8257 0.033366 TCGCAGTGCACAAGCTAAGA 59.967 50.000 25.27 15.83 42.74 2.10
8012 8258 0.164647 GTCGCAGTGCACAAGCTAAG 59.835 55.000 25.27 14.18 42.74 2.18
8013 8259 1.227999 GGTCGCAGTGCACAAGCTAA 61.228 55.000 25.27 14.45 42.74 3.09
8014 8260 1.667830 GGTCGCAGTGCACAAGCTA 60.668 57.895 25.27 15.94 42.74 3.32
8015 8261 2.974698 GGTCGCAGTGCACAAGCT 60.975 61.111 25.27 1.74 42.74 3.74
8016 8262 2.722130 CTTGGTCGCAGTGCACAAGC 62.722 60.000 22.89 20.69 42.57 4.01
8017 8263 1.280746 CTTGGTCGCAGTGCACAAG 59.719 57.895 21.04 21.94 31.86 3.16
8018 8264 2.186160 CCTTGGTCGCAGTGCACAA 61.186 57.895 21.04 15.07 0.00 3.33
8019 8265 2.591429 CCTTGGTCGCAGTGCACA 60.591 61.111 21.04 7.99 0.00 4.57
8020 8266 4.030452 GCCTTGGTCGCAGTGCAC 62.030 66.667 16.83 9.40 0.00 4.57
8023 8269 2.664851 TTCGCCTTGGTCGCAGTG 60.665 61.111 0.00 0.00 0.00 3.66
8024 8270 2.357517 CTTCGCCTTGGTCGCAGT 60.358 61.111 0.00 0.00 0.00 4.40
8025 8271 3.121030 CCTTCGCCTTGGTCGCAG 61.121 66.667 0.00 0.00 0.00 5.18
8026 8272 4.697756 CCCTTCGCCTTGGTCGCA 62.698 66.667 0.00 0.00 0.00 5.10
8027 8273 3.894547 TTCCCTTCGCCTTGGTCGC 62.895 63.158 0.00 0.00 0.00 5.19
8028 8274 0.887387 TTTTCCCTTCGCCTTGGTCG 60.887 55.000 0.00 0.00 0.00 4.79
8029 8275 1.000607 GTTTTTCCCTTCGCCTTGGTC 60.001 52.381 0.00 0.00 0.00 4.02
8030 8276 1.037493 GTTTTTCCCTTCGCCTTGGT 58.963 50.000 0.00 0.00 0.00 3.67
8031 8277 0.039527 CGTTTTTCCCTTCGCCTTGG 60.040 55.000 0.00 0.00 0.00 3.61
8032 8278 0.948678 TCGTTTTTCCCTTCGCCTTG 59.051 50.000 0.00 0.00 0.00 3.61
8033 8279 1.202722 TCTCGTTTTTCCCTTCGCCTT 60.203 47.619 0.00 0.00 0.00 4.35
8034 8280 0.395312 TCTCGTTTTTCCCTTCGCCT 59.605 50.000 0.00 0.00 0.00 5.52
8035 8281 0.796927 CTCTCGTTTTTCCCTTCGCC 59.203 55.000 0.00 0.00 0.00 5.54
8036 8282 1.792006 TCTCTCGTTTTTCCCTTCGC 58.208 50.000 0.00 0.00 0.00 4.70
8037 8283 3.391049 AGTTCTCTCGTTTTTCCCTTCG 58.609 45.455 0.00 0.00 0.00 3.79
8038 8284 6.856135 TTAAGTTCTCTCGTTTTTCCCTTC 57.144 37.500 0.00 0.00 0.00 3.46
8039 8285 6.771267 ACATTAAGTTCTCTCGTTTTTCCCTT 59.229 34.615 0.00 0.00 0.00 3.95
8040 8286 6.296803 ACATTAAGTTCTCTCGTTTTTCCCT 58.703 36.000 0.00 0.00 0.00 4.20
8041 8287 6.427242 AGACATTAAGTTCTCTCGTTTTTCCC 59.573 38.462 0.00 0.00 0.00 3.97
8042 8288 7.422878 AGACATTAAGTTCTCTCGTTTTTCC 57.577 36.000 0.00 0.00 0.00 3.13
8043 8289 9.717892 AAAAGACATTAAGTTCTCTCGTTTTTC 57.282 29.630 0.00 0.00 0.00 2.29
8045 8291 9.503427 CAAAAAGACATTAAGTTCTCTCGTTTT 57.497 29.630 0.00 0.00 0.00 2.43
8046 8292 7.644157 GCAAAAAGACATTAAGTTCTCTCGTTT 59.356 33.333 0.00 0.00 0.00 3.60
8047 8293 7.012421 AGCAAAAAGACATTAAGTTCTCTCGTT 59.988 33.333 0.00 0.00 0.00 3.85
8048 8294 6.483640 AGCAAAAAGACATTAAGTTCTCTCGT 59.516 34.615 0.00 0.00 0.00 4.18
8049 8295 6.892691 AGCAAAAAGACATTAAGTTCTCTCG 58.107 36.000 0.00 0.00 0.00 4.04
8084 8330 6.558009 CAGTAGTAAGTTCATTGCATGCAAT 58.442 36.000 34.78 34.78 46.35 3.56
8085 8331 5.619757 GCAGTAGTAAGTTCATTGCATGCAA 60.620 40.000 33.57 33.57 40.47 4.08
8086 8332 4.142622 GCAGTAGTAAGTTCATTGCATGCA 60.143 41.667 18.46 18.46 33.25 3.96
8087 8333 4.142622 TGCAGTAGTAAGTTCATTGCATGC 60.143 41.667 11.82 11.82 35.41 4.06
8088 8334 5.550232 TGCAGTAGTAAGTTCATTGCATG 57.450 39.130 0.00 0.00 35.41 4.06
8090 8336 5.003160 ACATGCAGTAGTAAGTTCATTGCA 58.997 37.500 0.00 0.00 43.24 4.08
8091 8337 5.447818 GGACATGCAGTAGTAAGTTCATTGC 60.448 44.000 0.00 0.00 0.00 3.56
8092 8338 5.877012 AGGACATGCAGTAGTAAGTTCATTG 59.123 40.000 0.00 0.00 0.00 2.82
8093 8339 5.877012 CAGGACATGCAGTAGTAAGTTCATT 59.123 40.000 0.00 0.00 0.00 2.57
8094 8340 5.046304 ACAGGACATGCAGTAGTAAGTTCAT 60.046 40.000 0.00 0.00 0.00 2.57
8095 8341 4.283467 ACAGGACATGCAGTAGTAAGTTCA 59.717 41.667 0.00 0.00 0.00 3.18
8096 8342 4.822026 ACAGGACATGCAGTAGTAAGTTC 58.178 43.478 0.00 0.00 0.00 3.01
8097 8343 4.891992 ACAGGACATGCAGTAGTAAGTT 57.108 40.909 0.00 0.00 0.00 2.66
8098 8344 4.891992 AACAGGACATGCAGTAGTAAGT 57.108 40.909 0.00 0.00 0.00 2.24
8099 8345 4.997395 ACAAACAGGACATGCAGTAGTAAG 59.003 41.667 0.00 0.00 0.00 2.34
8100 8346 4.968259 ACAAACAGGACATGCAGTAGTAA 58.032 39.130 0.00 0.00 0.00 2.24
8101 8347 4.617253 ACAAACAGGACATGCAGTAGTA 57.383 40.909 0.00 0.00 0.00 1.82
8102 8348 3.492102 ACAAACAGGACATGCAGTAGT 57.508 42.857 0.00 0.00 0.00 2.73
8103 8349 4.997395 ACTAACAAACAGGACATGCAGTAG 59.003 41.667 0.00 0.00 0.00 2.57
8104 8350 4.968259 ACTAACAAACAGGACATGCAGTA 58.032 39.130 0.00 0.00 0.00 2.74
8105 8351 3.815401 GACTAACAAACAGGACATGCAGT 59.185 43.478 0.00 0.00 0.00 4.40
8106 8352 4.067896 AGACTAACAAACAGGACATGCAG 58.932 43.478 0.00 0.00 0.00 4.41
8107 8353 4.065088 GAGACTAACAAACAGGACATGCA 58.935 43.478 0.00 0.00 0.00 3.96
8108 8354 4.065088 TGAGACTAACAAACAGGACATGC 58.935 43.478 0.00 0.00 0.00 4.06
8109 8355 5.760253 ACTTGAGACTAACAAACAGGACATG 59.240 40.000 0.00 0.00 0.00 3.21
8110 8356 5.930135 ACTTGAGACTAACAAACAGGACAT 58.070 37.500 0.00 0.00 0.00 3.06
8111 8357 5.105106 TGACTTGAGACTAACAAACAGGACA 60.105 40.000 0.00 0.00 0.00 4.02
8112 8358 5.357257 TGACTTGAGACTAACAAACAGGAC 58.643 41.667 0.00 0.00 0.00 3.85
8113 8359 5.607939 TGACTTGAGACTAACAAACAGGA 57.392 39.130 0.00 0.00 0.00 3.86
8114 8360 6.867662 AATGACTTGAGACTAACAAACAGG 57.132 37.500 0.00 0.00 0.00 4.00
8121 8367 9.118236 GCATGTTTTTAATGACTTGAGACTAAC 57.882 33.333 0.00 0.00 0.00 2.34
8122 8368 8.845227 TGCATGTTTTTAATGACTTGAGACTAA 58.155 29.630 0.00 0.00 0.00 2.24
8123 8369 8.289618 GTGCATGTTTTTAATGACTTGAGACTA 58.710 33.333 0.00 0.00 0.00 2.59
8124 8370 7.141363 GTGCATGTTTTTAATGACTTGAGACT 58.859 34.615 0.00 0.00 0.00 3.24
8125 8371 6.086765 CGTGCATGTTTTTAATGACTTGAGAC 59.913 38.462 0.00 4.42 0.00 3.36
8126 8372 6.142139 CGTGCATGTTTTTAATGACTTGAGA 58.858 36.000 0.00 0.00 0.00 3.27
8127 8373 5.914635 ACGTGCATGTTTTTAATGACTTGAG 59.085 36.000 5.51 0.00 0.00 3.02
8128 8374 5.826586 ACGTGCATGTTTTTAATGACTTGA 58.173 33.333 5.51 0.00 0.00 3.02
8129 8375 6.509317 AACGTGCATGTTTTTAATGACTTG 57.491 33.333 18.63 0.00 0.00 3.16
8130 8376 6.754209 TGAAACGTGCATGTTTTTAATGACTT 59.246 30.769 31.83 11.13 41.89 3.01
8131 8377 6.198216 GTGAAACGTGCATGTTTTTAATGACT 59.802 34.615 31.83 11.82 41.89 3.41
8132 8378 6.020281 TGTGAAACGTGCATGTTTTTAATGAC 60.020 34.615 31.83 19.89 41.89 3.06
8133 8379 6.036470 TGTGAAACGTGCATGTTTTTAATGA 58.964 32.000 31.83 14.27 41.89 2.57
8134 8380 6.266203 TGTGAAACGTGCATGTTTTTAATG 57.734 33.333 31.83 0.00 41.89 1.90
8135 8381 6.922957 AGATGTGAAACGTGCATGTTTTTAAT 59.077 30.769 31.83 24.48 41.89 1.40
8136 8382 6.269315 AGATGTGAAACGTGCATGTTTTTAA 58.731 32.000 31.83 21.68 41.89 1.52
8137 8383 5.826586 AGATGTGAAACGTGCATGTTTTTA 58.173 33.333 31.83 22.65 41.89 1.52
8138 8384 4.681744 AGATGTGAAACGTGCATGTTTTT 58.318 34.783 31.83 19.47 41.89 1.94
8139 8385 4.036734 AGAGATGTGAAACGTGCATGTTTT 59.963 37.500 31.83 19.51 41.89 2.43
8140 8386 3.565482 AGAGATGTGAAACGTGCATGTTT 59.435 39.130 31.83 31.83 44.36 2.83
8141 8387 3.141398 AGAGATGTGAAACGTGCATGTT 58.859 40.909 18.63 18.63 42.39 2.71
8142 8388 2.771089 AGAGATGTGAAACGTGCATGT 58.229 42.857 5.51 5.51 42.39 3.21
8143 8389 3.818961 AAGAGATGTGAAACGTGCATG 57.181 42.857 3.82 3.82 42.39 4.06
8144 8390 5.163723 CCAATAAGAGATGTGAAACGTGCAT 60.164 40.000 0.00 0.00 42.39 3.96
8145 8391 4.154015 CCAATAAGAGATGTGAAACGTGCA 59.846 41.667 0.00 0.00 42.39 4.57
8146 8392 4.154195 ACCAATAAGAGATGTGAAACGTGC 59.846 41.667 0.00 0.00 42.39 5.34
8147 8393 5.862924 ACCAATAAGAGATGTGAAACGTG 57.137 39.130 0.00 0.00 42.39 4.49
8148 8394 5.995282 TCAACCAATAAGAGATGTGAAACGT 59.005 36.000 0.00 0.00 42.39 3.99
8149 8395 6.480524 TCAACCAATAAGAGATGTGAAACG 57.519 37.500 0.00 0.00 42.39 3.60
8150 8396 9.941664 CATATCAACCAATAAGAGATGTGAAAC 57.058 33.333 0.00 0.00 31.90 2.78
8151 8397 9.685276 ACATATCAACCAATAAGAGATGTGAAA 57.315 29.630 0.00 0.00 41.18 2.69
8152 8398 9.330063 GACATATCAACCAATAAGAGATGTGAA 57.670 33.333 6.64 0.00 42.33 3.18
8153 8399 8.485392 TGACATATCAACCAATAAGAGATGTGA 58.515 33.333 6.64 0.00 42.33 3.58
8154 8400 8.554528 GTGACATATCAACCAATAAGAGATGTG 58.445 37.037 6.64 0.00 42.33 3.21
8155 8401 7.439356 CGTGACATATCAACCAATAAGAGATGT 59.561 37.037 0.00 0.00 44.20 3.06
8156 8402 7.653311 TCGTGACATATCAACCAATAAGAGATG 59.347 37.037 0.00 0.00 36.31 2.90
8157 8403 7.726216 TCGTGACATATCAACCAATAAGAGAT 58.274 34.615 0.00 0.00 36.31 2.75
8158 8404 7.107639 TCGTGACATATCAACCAATAAGAGA 57.892 36.000 0.00 0.00 36.31 3.10
8159 8405 7.770801 TTCGTGACATATCAACCAATAAGAG 57.229 36.000 0.00 0.00 36.31 2.85
8160 8406 7.604545 TGTTTCGTGACATATCAACCAATAAGA 59.395 33.333 0.00 0.00 36.31 2.10
8161 8407 7.747888 TGTTTCGTGACATATCAACCAATAAG 58.252 34.615 0.00 0.00 36.31 1.73
8162 8408 7.674471 TGTTTCGTGACATATCAACCAATAA 57.326 32.000 0.00 0.00 36.31 1.40
8163 8409 7.604545 TCTTGTTTCGTGACATATCAACCAATA 59.395 33.333 0.00 0.00 36.31 1.90
8164 8410 6.429692 TCTTGTTTCGTGACATATCAACCAAT 59.570 34.615 0.00 0.00 36.31 3.16
8165 8411 5.760743 TCTTGTTTCGTGACATATCAACCAA 59.239 36.000 0.00 0.00 36.31 3.67
8166 8412 5.301555 TCTTGTTTCGTGACATATCAACCA 58.698 37.500 0.00 0.00 36.31 3.67
8167 8413 5.856126 TCTTGTTTCGTGACATATCAACC 57.144 39.130 0.00 0.00 36.31 3.77
8168 8414 6.299966 CGTTTCTTGTTTCGTGACATATCAAC 59.700 38.462 0.00 0.00 36.31 3.18
8169 8415 6.201234 TCGTTTCTTGTTTCGTGACATATCAA 59.799 34.615 0.00 0.00 36.31 2.57
8170 8416 5.692654 TCGTTTCTTGTTTCGTGACATATCA 59.307 36.000 0.00 0.00 0.00 2.15
8171 8417 6.089016 TCTCGTTTCTTGTTTCGTGACATATC 59.911 38.462 0.00 0.00 0.00 1.63
8172 8418 5.924254 TCTCGTTTCTTGTTTCGTGACATAT 59.076 36.000 0.00 0.00 0.00 1.78
8173 8419 5.283294 TCTCGTTTCTTGTTTCGTGACATA 58.717 37.500 0.00 0.00 0.00 2.29
8174 8420 4.116961 TCTCGTTTCTTGTTTCGTGACAT 58.883 39.130 0.00 0.00 0.00 3.06
8175 8421 3.513662 TCTCGTTTCTTGTTTCGTGACA 58.486 40.909 0.00 0.00 0.00 3.58
8176 8422 4.506217 CTTCTCGTTTCTTGTTTCGTGAC 58.494 43.478 0.00 0.00 0.00 3.67
8177 8423 3.554324 CCTTCTCGTTTCTTGTTTCGTGA 59.446 43.478 0.00 0.00 0.00 4.35
8178 8424 3.303132 CCCTTCTCGTTTCTTGTTTCGTG 60.303 47.826 0.00 0.00 0.00 4.35
8179 8425 2.870411 CCCTTCTCGTTTCTTGTTTCGT 59.130 45.455 0.00 0.00 0.00 3.85
8180 8426 3.128349 TCCCTTCTCGTTTCTTGTTTCG 58.872 45.455 0.00 0.00 0.00 3.46
8181 8427 4.127907 ACTCCCTTCTCGTTTCTTGTTTC 58.872 43.478 0.00 0.00 0.00 2.78
8182 8428 4.152284 ACTCCCTTCTCGTTTCTTGTTT 57.848 40.909 0.00 0.00 0.00 2.83
8183 8429 3.840124 ACTCCCTTCTCGTTTCTTGTT 57.160 42.857 0.00 0.00 0.00 2.83
8184 8430 3.840124 AACTCCCTTCTCGTTTCTTGT 57.160 42.857 0.00 0.00 0.00 3.16
8185 8431 5.701290 ACATTAACTCCCTTCTCGTTTCTTG 59.299 40.000 0.00 0.00 0.00 3.02
8186 8432 5.866207 ACATTAACTCCCTTCTCGTTTCTT 58.134 37.500 0.00 0.00 0.00 2.52
8187 8433 5.485209 ACATTAACTCCCTTCTCGTTTCT 57.515 39.130 0.00 0.00 0.00 2.52
8188 8434 5.579904 GGTACATTAACTCCCTTCTCGTTTC 59.420 44.000 0.00 0.00 0.00 2.78
8189 8435 5.485620 GGTACATTAACTCCCTTCTCGTTT 58.514 41.667 0.00 0.00 0.00 3.60
8190 8436 4.381292 CGGTACATTAACTCCCTTCTCGTT 60.381 45.833 0.00 0.00 0.00 3.85
8191 8437 3.129988 CGGTACATTAACTCCCTTCTCGT 59.870 47.826 0.00 0.00 0.00 4.18
8192 8438 3.129988 ACGGTACATTAACTCCCTTCTCG 59.870 47.826 0.00 0.00 0.00 4.04
8193 8439 4.430908 CACGGTACATTAACTCCCTTCTC 58.569 47.826 0.00 0.00 0.00 2.87
8194 8440 3.369157 GCACGGTACATTAACTCCCTTCT 60.369 47.826 0.00 0.00 0.00 2.85
8195 8441 2.934553 GCACGGTACATTAACTCCCTTC 59.065 50.000 0.00 0.00 0.00 3.46
8196 8442 2.355412 GGCACGGTACATTAACTCCCTT 60.355 50.000 0.00 0.00 0.00 3.95
8197 8443 1.208776 GGCACGGTACATTAACTCCCT 59.791 52.381 0.00 0.00 0.00 4.20
8198 8444 1.208776 AGGCACGGTACATTAACTCCC 59.791 52.381 0.00 0.00 0.00 4.30
8199 8445 2.685850 AGGCACGGTACATTAACTCC 57.314 50.000 0.00 0.00 0.00 3.85
8200 8446 4.565564 CACTTAGGCACGGTACATTAACTC 59.434 45.833 0.00 0.00 0.00 3.01
8201 8447 4.020839 ACACTTAGGCACGGTACATTAACT 60.021 41.667 0.00 0.00 0.00 2.24
8202 8448 4.248058 ACACTTAGGCACGGTACATTAAC 58.752 43.478 0.00 0.00 0.00 2.01
8203 8449 4.540359 ACACTTAGGCACGGTACATTAA 57.460 40.909 0.00 0.00 0.00 1.40
8204 8450 4.540359 AACACTTAGGCACGGTACATTA 57.460 40.909 0.00 0.00 0.00 1.90
8205 8451 3.412237 AACACTTAGGCACGGTACATT 57.588 42.857 0.00 0.00 0.00 2.71
8206 8452 3.412237 AAACACTTAGGCACGGTACAT 57.588 42.857 0.00 0.00 0.00 2.29
8207 8453 2.873472 CAAAACACTTAGGCACGGTACA 59.127 45.455 0.00 0.00 0.00 2.90
8208 8454 3.132925 TCAAAACACTTAGGCACGGTAC 58.867 45.455 0.00 0.00 0.00 3.34
8209 8455 3.069872 TCTCAAAACACTTAGGCACGGTA 59.930 43.478 0.00 0.00 0.00 4.02
8210 8456 2.158871 TCTCAAAACACTTAGGCACGGT 60.159 45.455 0.00 0.00 0.00 4.83
8211 8457 2.489971 TCTCAAAACACTTAGGCACGG 58.510 47.619 0.00 0.00 0.00 4.94
8212 8458 4.749245 AATCTCAAAACACTTAGGCACG 57.251 40.909 0.00 0.00 0.00 5.34
8213 8459 7.542130 CCAAATAATCTCAAAACACTTAGGCAC 59.458 37.037 0.00 0.00 0.00 5.01
8214 8460 7.232534 ACCAAATAATCTCAAAACACTTAGGCA 59.767 33.333 0.00 0.00 0.00 4.75
8215 8461 7.602753 ACCAAATAATCTCAAAACACTTAGGC 58.397 34.615 0.00 0.00 0.00 3.93
8216 8462 9.981114 AAACCAAATAATCTCAAAACACTTAGG 57.019 29.630 0.00 0.00 0.00 2.69
8220 8466 9.665719 ACAAAAACCAAATAATCTCAAAACACT 57.334 25.926 0.00 0.00 0.00 3.55
8226 8472 9.757227 CACCTTACAAAAACCAAATAATCTCAA 57.243 29.630 0.00 0.00 0.00 3.02
8227 8473 9.137459 TCACCTTACAAAAACCAAATAATCTCA 57.863 29.630 0.00 0.00 0.00 3.27
8228 8474 9.406828 GTCACCTTACAAAAACCAAATAATCTC 57.593 33.333 0.00 0.00 0.00 2.75
8229 8475 9.143155 AGTCACCTTACAAAAACCAAATAATCT 57.857 29.630 0.00 0.00 0.00 2.40
8230 8476 9.758651 AAGTCACCTTACAAAAACCAAATAATC 57.241 29.630 0.00 0.00 0.00 1.75
8250 8496 2.816087 TCCGTCTAGGTGTGTAAGTCAC 59.184 50.000 0.00 0.00 42.20 3.67
8251 8497 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
8252 8498 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
8253 8499 2.040813 TCCTCCGTCTAGGTGTGTAAGT 59.959 50.000 0.00 0.00 41.99 2.24
8254 8500 2.719739 TCCTCCGTCTAGGTGTGTAAG 58.280 52.381 0.00 0.00 41.99 2.34
8255 8501 2.885135 TCCTCCGTCTAGGTGTGTAA 57.115 50.000 0.00 0.00 41.99 2.41
8256 8502 2.040813 ACTTCCTCCGTCTAGGTGTGTA 59.959 50.000 0.00 0.00 41.99 2.90
8257 8503 1.203025 ACTTCCTCCGTCTAGGTGTGT 60.203 52.381 0.00 0.00 41.99 3.72
8258 8504 1.546961 ACTTCCTCCGTCTAGGTGTG 58.453 55.000 0.00 0.00 41.99 3.82
8259 8505 3.666345 ATACTTCCTCCGTCTAGGTGT 57.334 47.619 0.00 0.00 41.99 4.16
8260 8506 5.008811 CAGTAATACTTCCTCCGTCTAGGTG 59.991 48.000 0.00 0.00 41.99 4.00
8261 8507 5.131784 CAGTAATACTTCCTCCGTCTAGGT 58.868 45.833 0.00 0.00 41.99 3.08
8262 8508 4.023021 GCAGTAATACTTCCTCCGTCTAGG 60.023 50.000 0.00 0.00 42.97 3.02
8263 8509 4.822896 AGCAGTAATACTTCCTCCGTCTAG 59.177 45.833 0.00 0.00 0.00 2.43
8264 8510 4.789807 AGCAGTAATACTTCCTCCGTCTA 58.210 43.478 0.00 0.00 0.00 2.59
8265 8511 3.633065 GAGCAGTAATACTTCCTCCGTCT 59.367 47.826 6.59 0.00 0.00 4.18
8266 8512 3.633065 AGAGCAGTAATACTTCCTCCGTC 59.367 47.826 11.84 0.00 0.00 4.79
8267 8513 3.381908 CAGAGCAGTAATACTTCCTCCGT 59.618 47.826 11.84 0.00 0.00 4.69
8268 8514 3.797184 GCAGAGCAGTAATACTTCCTCCG 60.797 52.174 11.84 5.81 0.00 4.63
8269 8515 3.723260 GCAGAGCAGTAATACTTCCTCC 58.277 50.000 11.84 0.00 0.00 4.30
8270 8516 3.376540 CGCAGAGCAGTAATACTTCCTC 58.623 50.000 8.86 8.86 0.00 3.71
8271 8517 3.444703 CGCAGAGCAGTAATACTTCCT 57.555 47.619 0.00 0.00 0.00 3.36
8291 8537 2.084546 ACTAAGCATTTCGGTCCAAGC 58.915 47.619 0.00 0.00 0.00 4.01
8292 8538 4.215399 TGAAACTAAGCATTTCGGTCCAAG 59.785 41.667 0.00 0.00 38.64 3.61
8335 8616 5.391843 CCTGAACAAATCATGACACGCAATA 60.392 40.000 0.00 0.00 37.44 1.90
8375 8656 1.138883 GAGTCACGCATACTCGGCA 59.861 57.895 0.00 0.00 34.50 5.69
8378 8659 2.945315 GTGGAGTCACGCATACTCG 58.055 57.895 6.38 0.00 43.55 4.18
8407 8690 9.709600 GTTTGTCTTTATTTAGCTCATTCTAGC 57.290 33.333 0.00 0.00 43.11 3.42
8413 8696 6.879458 ACCGAGTTTGTCTTTATTTAGCTCAT 59.121 34.615 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.