AutoCloner

Multiple sequence alignment - TraesCS7D01G186900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G186900	chr7D	100.000	2318	0	0	1	2318	139749776	139747459	0.000000e+00	4281.0
1	TraesCS7D01G186900	chr4D	96.873	1343	39	3	1	1341	482768185	482769526	0.000000e+00	2244.0
2	TraesCS7D01G186900	chr4D	100.000	29	0	0	1609	1637	481641136	481641108	1.000000e-03	54.7
3	TraesCS7D01G186900	chr3B	91.964	1344	103	5	1	1341	808035093	808036434	0.000000e+00	1879.0
4	TraesCS7D01G186900	chr3B	88.205	1348	149	9	1	1341	571018234	571019578	0.000000e+00	1600.0
5	TraesCS7D01G186900	chr3B	83.135	421	44	20	1908	2318	658222541	658222944	2.190000e-95	359.0
6	TraesCS7D01G186900	chr1B	89.963	1345	129	6	1	1341	41706536	41705194	0.000000e+00	1731.0
7	TraesCS7D01G186900	chrUn	89.963	1345	127	7	1	1341	298402285	298403625	0.000000e+00	1729.0
8	TraesCS7D01G186900	chrUn	90.008	1321	125	6	24	1341	375723698	375722382	0.000000e+00	1701.0
9	TraesCS7D01G186900	chr7A	89.814	1345	130	6	1	1341	189349493	189350834	0.000000e+00	1718.0
10	TraesCS7D01G186900	chr7A	87.816	1346	156	8	1	1341	29988490	29987148	0.000000e+00	1570.0
11	TraesCS7D01G186900	chr7A	87.591	274	33	1	1636	1909	533009823	533009551	1.340000e-82	316.0
12	TraesCS7D01G186900	chr6B	88.419	1347	146	10	1	1341	564308496	564309838	0.000000e+00	1615.0
13	TraesCS7D01G186900	chr6B	82.904	427	31	15	1908	2318	405954971	405955371	1.700000e-91	346.0
14	TraesCS7D01G186900	chr1D	91.945	509	37	3	1340	1848	364833862	364833358	0.000000e+00	710.0
15	TraesCS7D01G186900	chr1D	83.732	418	39	14	1916	2307	29136027	29135613	3.640000e-98	368.0
16	TraesCS7D01G186900	chr1D	86.264	182	15	3	1911	2082	364833142	364832961	3.040000e-44	189.0
17	TraesCS7D01G186900	chr1D	97.222	36	1	0	1874	1909	364833361	364833326	6.920000e-06	62.1
18	TraesCS7D01G186900	chr5A	88.246	570	66	1	1340	1909	364926468	364927036	0.000000e+00	680.0
19	TraesCS7D01G186900	chr5A	87.647	510	62	1	1340	1848	152688201	152688710	1.980000e-165	592.0
20	TraesCS7D01G186900	chr5D	92.699	452	28	2	1355	1806	44980137	44979691	0.000000e+00	647.0
21	TraesCS7D01G186900	chr5D	93.478	230	11	2	2093	2318	130774069	130774298	2.850000e-89	339.0
22	TraesCS7D01G186900	chr5D	81.524	433	41	21	1908	2316	271538946	271539363	1.030000e-83	320.0
23	TraesCS7D01G186900	chr5D	86.219	283	35	3	2039	2318	495852031	495851750	1.040000e-78	303.0
24	TraesCS7D01G186900	chr5D	85.911	291	29	6	2039	2318	103546471	103546182	1.350000e-77	300.0
25	TraesCS7D01G186900	chr5D	85.792	183	14	5	1911	2082	44979462	44979281	1.410000e-42	183.0
26	TraesCS7D01G186900	chr5D	88.889	81	3	1	1556	1636	241204814	241204888	6.820000e-16	95.3
27	TraesCS7D01G186900	chr5D	97.222	36	1	0	1874	1909	44979681	44979646	6.920000e-06	62.1
28	TraesCS7D01G186900	chr2A	87.558	434	30	9	1909	2318	571429169	571429602	4.480000e-132	481.0
29	TraesCS7D01G186900	chr7B	93.286	283	16	3	2039	2318	749116913	749116631	4.610000e-112	414.0
30	TraesCS7D01G186900	chr6D	84.941	425	39	10	1918	2318	19265728	19266151	7.710000e-110	407.0
31	TraesCS7D01G186900	chr6D	87.189	281	36	0	1629	1909	19265326	19265606	1.030000e-83	320.0
32	TraesCS7D01G186900	chr6D	100.000	32	0	0	1606	1637	470469690	470469721	2.490000e-05	60.2
33	TraesCS7D01G186900	chr6A	83.491	424	52	14	1910	2318	512024967	512024547	1.680000e-101	379.0
34	TraesCS7D01G186900	chr6A	86.463	229	27	3	1683	1909	91845708	91845934	4.950000e-62	248.0
35	TraesCS7D01G186900	chr2B	90.559	286	21	4	2039	2318	99927065	99926780	7.820000e-100	374.0
36	TraesCS7D01G186900	chr3D	89.545	220	16	1	1470	1689	577056214	577056426	2.930000e-69	272.0
37	TraesCS7D01G186900	chr3A	86.111	216	29	1	1683	1898	36110504	36110718	4.980000e-57	231.0
38	TraesCS7D01G186900	chr4B	100.000	29	0	0	1609	1637	187442347	187442319	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G186900	chr7D	139747459	139749776	2317	True	4281.000000	4281	100.000000	1	2318	1	chr7D.!!$R1	2317
1	TraesCS7D01G186900	chr4D	482768185	482769526	1341	False	2244.000000	2244	96.873000	1	1341	1	chr4D.!!$F1	1340
2	TraesCS7D01G186900	chr3B	808035093	808036434	1341	False	1879.000000	1879	91.964000	1	1341	1	chr3B.!!$F3	1340
3	TraesCS7D01G186900	chr3B	571018234	571019578	1344	False	1600.000000	1600	88.205000	1	1341	1	chr3B.!!$F1	1340
4	TraesCS7D01G186900	chr1B	41705194	41706536	1342	True	1731.000000	1731	89.963000	1	1341	1	chr1B.!!$R1	1340
5	TraesCS7D01G186900	chrUn	298402285	298403625	1340	False	1729.000000	1729	89.963000	1	1341	1	chrUn.!!$F1	1340
6	TraesCS7D01G186900	chrUn	375722382	375723698	1316	True	1701.000000	1701	90.008000	24	1341	1	chrUn.!!$R1	1317
7	TraesCS7D01G186900	chr7A	189349493	189350834	1341	False	1718.000000	1718	89.814000	1	1341	1	chr7A.!!$F1	1340
8	TraesCS7D01G186900	chr7A	29987148	29988490	1342	True	1570.000000	1570	87.816000	1	1341	1	chr7A.!!$R1	1340
9	TraesCS7D01G186900	chr6B	564308496	564309838	1342	False	1615.000000	1615	88.419000	1	1341	1	chr6B.!!$F2	1340
10	TraesCS7D01G186900	chr1D	364832961	364833862	901	True	320.366667	710	91.810333	1340	2082	3	chr1D.!!$R2	742
11	TraesCS7D01G186900	chr5A	364926468	364927036	568	False	680.000000	680	88.246000	1340	1909	1	chr5A.!!$F2	569
12	TraesCS7D01G186900	chr5A	152688201	152688710	509	False	592.000000	592	87.647000	1340	1848	1	chr5A.!!$F1	508
13	TraesCS7D01G186900	chr5D	44979281	44980137	856	True	297.366667	647	91.904333	1355	2082	3	chr5D.!!$R3	727
14	TraesCS7D01G186900	chr6D	19265326	19266151	825	False	363.500000	407	86.065000	1629	2318	2	chr6D.!!$F2	689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
635	640	0.038709	TAGTTTGGCGCATTTGGCAC	60.039	50.0	10.83	0.0	44.88	5.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2255	2474	0.1791	CCCGCGCTCCATATCCATAG	60.179	60.0	5.56	0.0	0.0	2.23	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	54	1.529438	GCCGTCTCAATCGTGTTTCAA	59.471	47.619	0.00	0.00	0.00	2.69
156	160	6.486657	TCAAAATTCGAACTTCTCCAAGACAT	59.513	34.615	0.00	0.00	33.34	3.06
184	188	7.419057	GGTCTGACTTTATCTCATGGTATCCAA	60.419	40.741	7.85	0.00	36.95	3.53
294	299	2.758327	CGAGTGGATCCCGGTCCA	60.758	66.667	9.90	9.69	45.78	4.02
315	320	1.774110	ATGGAACTGTGTGTGGCAAA	58.226	45.000	0.00	0.00	0.00	3.68
635	640	0.038709	TAGTTTGGCGCATTTGGCAC	60.039	50.000	10.83	0.00	44.88	5.01
685	690	0.462759	GCTCCGCCAGTTTCTGCTAT	60.463	55.000	0.00	0.00	0.00	2.97
745	750	1.143183	CTGGTCGGTATTCGGTGGG	59.857	63.158	0.00	0.00	39.77	4.61
874	879	4.100189	CCCTAACTGTCGATGGATCTTTCT	59.900	45.833	0.00	0.00	0.00	2.52
972	977	2.897969	AGTCCTGTTCCACTGTAACGAT	59.102	45.455	0.00	0.00	0.00	3.73
983	988	1.478510	CTGTAACGATGCTCTGGAGGT	59.521	52.381	0.00	0.00	0.00	3.85
1141	1146	7.225734	GTCATTTGGTTCTAGAGATTAAGGAGC	59.774	40.741	0.00	0.00	0.00	4.70
1168	1173	7.402071	TGATGAGTAATAGGGAGTTTGTACCTT	59.598	37.037	0.00	0.00	35.84	3.50
1241	1246	2.442272	ATCCGAGCGGGCTACAGT	60.442	61.111	9.29	0.00	34.94	3.55
1357	1363	3.464111	AAAATTGCTTCTGCTGCTTGT	57.536	38.095	0.00	0.00	40.48	3.16
1372	1378	2.776670	CTTGTCTCTGCTGCGAGCCA	62.777	60.000	13.96	8.36	41.51	4.75
1387	1393	4.077184	CCACTCACGGCCGCCTTA	62.077	66.667	28.58	7.15	0.00	2.69
1389	1395	3.307906	ACTCACGGCCGCCTTACA	61.308	61.111	28.58	1.10	0.00	2.41
1394	1400	1.449601	ACGGCCGCCTTACATCAAG	60.450	57.895	28.58	0.00	0.00	3.02
1400	1406	1.134521	CCGCCTTACATCAAGCCACTA	60.135	52.381	0.00	0.00	32.41	2.74
1405	1411	3.457234	CTTACATCAAGCCACTATCGCA	58.543	45.455	0.00	0.00	0.00	5.10
1413	1419	2.063979	CCACTATCGCAGTCCCCCA	61.064	63.158	0.00	0.00	34.26	4.96
1426	1432	4.796231	CCCCACTTCGCCGACTCG	62.796	72.222	0.00	0.00	0.00	4.18
1489	1495	1.059584	TGAACTCCAAGCCACCCTCA	61.060	55.000	0.00	0.00	0.00	3.86
1513	1519	1.612442	AACCCTTCCTCGGCTGCTA	60.612	57.895	0.00	0.00	0.00	3.49
1643	1650	3.284449	CTGCTGCTGCTGTGCACA	61.284	61.111	20.37	20.37	38.12	4.57
1644	1651	2.596338	TGCTGCTGCTGTGCACAT	60.596	55.556	22.00	0.00	38.12	3.21
1691	1698	2.283894	TTGCTCCTCCTCTGCCGA	60.284	61.111	0.00	0.00	0.00	5.54
1771	1779	4.307908	GCTTTTGCCGTGCGTCGT	62.308	61.111	0.00	0.00	40.15	4.34
1806	1814	1.814586	CGCTCCTACCTCGAGTCGT	60.815	63.158	13.12	5.60	0.00	4.34
1832	1840	1.661821	GCGAGCTGTTGTGAGTCGT	60.662	57.895	0.00	0.00	33.19	4.34
1909	1917	0.679002	CTGGAGCAACATGGGTGAGG	60.679	60.000	0.00	0.00	0.00	3.86
1911	1919	0.678048	GGAGCAACATGGGTGAGGTC	60.678	60.000	0.00	0.00	33.76	3.85
1913	1921	0.326264	AGCAACATGGGTGAGGTCTC	59.674	55.000	0.00	0.00	0.00	3.36
1956	2153	3.101437	TGGGGCTATCGTCTCAAAACTA	58.899	45.455	0.00	0.00	0.00	2.24
1957	2154	3.709653	TGGGGCTATCGTCTCAAAACTAT	59.290	43.478	0.00	0.00	0.00	2.12
2035	2233	5.486775	CACTGGATTGATAGATACCCCTCAT	59.513	44.000	0.00	0.00	0.00	2.90
2090	2305	0.890996	CACAGTCCAGGTTCCAAGGC	60.891	60.000	0.00	0.00	0.00	4.35
2112	2327	3.139850	TGAGTTATCCGCGGAACAAAAA	58.860	40.909	34.66	17.89	0.00	1.94
2113	2328	3.754323	TGAGTTATCCGCGGAACAAAAAT	59.246	39.130	34.66	21.89	0.00	1.82
2114	2329	4.091453	AGTTATCCGCGGAACAAAAATG	57.909	40.909	34.66	0.00	0.00	2.32
2115	2330	3.504520	AGTTATCCGCGGAACAAAAATGT	59.495	39.130	34.66	15.05	0.00	2.71
2116	2331	4.696402	AGTTATCCGCGGAACAAAAATGTA	59.304	37.500	34.66	13.87	0.00	2.29
2120	2335	2.977169	CCGCGGAACAAAAATGTACTTG	59.023	45.455	24.07	0.00	0.00	3.16
2125	2340	5.583495	CGGAACAAAAATGTACTTGTCCAA	58.417	37.500	0.00	0.00	34.71	3.53
2139	2354	1.202568	TGTCCAATATGAGCGCCTGAG	60.203	52.381	2.29	0.00	0.00	3.35
2141	2356	1.973515	TCCAATATGAGCGCCTGAGAT	59.026	47.619	2.29	0.00	0.00	2.75
2155	2370	5.390991	GCGCCTGAGATATAAAAATACCAGC	60.391	44.000	0.00	0.00	0.00	4.85
2156	2371	5.934625	CGCCTGAGATATAAAAATACCAGCT	59.065	40.000	0.00	0.00	0.00	4.24
2188	2403	4.688879	TCCGGTCTATTTTAGCGCATATTG	59.311	41.667	11.47	0.00	36.56	1.90
2223	2442	7.875327	AAAACTACTCTGGTATGTGTGTTTT	57.125	32.000	0.00	0.00	32.54	2.43
2224	2443	7.492352	AAACTACTCTGGTATGTGTGTTTTC	57.508	36.000	0.00	0.00	0.00	2.29
2255	2474	5.277345	GGATAATTATCCGTCACACAAGTGC	60.277	44.000	25.16	1.64	42.69	4.40
2265	2484	4.209911	CGTCACACAAGTGCTATGGATATG	59.790	45.833	0.00	0.00	45.49	1.78
2275	2494	0.902984	TATGGATATGGAGCGCGGGT	60.903	55.000	8.83	0.00	0.00	5.28
2279	2498	3.521529	ATATGGAGCGCGGGTCAGC	62.522	63.158	8.83	0.00	0.00	4.26
2284	2503	2.511600	AGCGCGGGTCAGCATTAC	60.512	61.111	8.83	0.00	36.85	1.89
2289	2508	1.432270	GCGGGTCAGCATTACTCTGC	61.432	60.000	0.00	0.00	42.62	4.26
2290	2509	0.108186	CGGGTCAGCATTACTCTGCA	60.108	55.000	0.00	0.00	44.77	4.41
2291	2510	1.373570	GGGTCAGCATTACTCTGCAC	58.626	55.000	0.00	0.00	44.77	4.57
2295	2514	1.625315	TCAGCATTACTCTGCACTGGT	59.375	47.619	0.00	0.00	44.77	4.00
2307	2526	1.227147	CACTGGTGTTCGTCCGTGT	60.227	57.895	0.00	0.00	0.00	4.49
2309	2528	2.014554	CTGGTGTTCGTCCGTGTCG	61.015	63.158	0.00	0.00	0.00	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	54	2.643551	CCCATTAGCATCCAGAAACGT	58.356	47.619	0.00	0.00	0.00	3.99
84	86	2.065993	AATATTCACGGAGGCGATCG	57.934	50.000	11.69	11.69	0.00	3.69
156	160	4.023980	ACCATGAGATAAAGTCAGACCGA	58.976	43.478	0.00	0.00	0.00	4.69
184	188	5.622346	ACTGAGAAAACTCCACTCTTCTT	57.378	39.130	0.00	0.00	0.00	2.52
225	230	3.311486	TGTGTTGTGATCGCATGTAGA	57.689	42.857	10.29	0.00	0.00	2.59
294	299	2.877097	TGCCACACACAGTTCCATAT	57.123	45.000	0.00	0.00	0.00	1.78
315	320	1.330655	ATCTTCTGCGGGACCGATGT	61.331	55.000	15.99	0.00	42.83	3.06
378	383	5.299028	TGTGACGTAACACCTTACACTTCTA	59.701	40.000	0.10	0.00	39.69	2.10
531	536	6.070194	TCCCTTCCGTTATCAAGAAGAATCTT	60.070	38.462	0.00	0.00	46.91	2.40
635	640	4.444022	CCATGAGTCTGGTCATTCCTTAGG	60.444	50.000	0.00	0.00	34.81	2.69
685	690	0.112606	ACTCTCGAGGAAGTCCACCA	59.887	55.000	13.56	0.00	38.89	4.17
745	750	6.128822	GGCATTTTTCCTTTCAGAATTTCGTC	60.129	38.462	0.00	0.00	0.00	4.20
972	977	1.768275	TGAAGTTCAACCTCCAGAGCA	59.232	47.619	2.20	0.00	0.00	4.26
983	988	0.512518	CATGAGCGCGTGAAGTTCAA	59.487	50.000	7.25	0.00	32.63	2.69
1141	1146	7.070074	AGGTACAAACTCCCTATTACTCATCAG	59.930	40.741	0.00	0.00	0.00	2.90
1168	1173	9.869757	TCTATTCTGAGAACGACATATTTTCAA	57.130	29.630	0.00	0.00	0.00	2.69
1241	1246	2.897846	CCGAACGCAACCACACCA	60.898	61.111	0.00	0.00	0.00	4.17
1345	1351	0.395686	AGCAGAGACAAGCAGCAGAA	59.604	50.000	0.00	0.00	0.00	3.02
1357	1363	2.993840	AGTGGCTCGCAGCAGAGA	60.994	61.111	15.69	0.00	44.75	3.10
1372	1378	2.573609	GATGTAAGGCGGCCGTGAGT	62.574	60.000	28.70	12.38	0.00	3.41
1387	1393	1.208052	ACTGCGATAGTGGCTTGATGT	59.792	47.619	0.00	0.00	38.49	3.06
1389	1395	1.202580	GGACTGCGATAGTGGCTTGAT	60.203	52.381	0.00	0.00	40.53	2.57
1394	1400	2.109181	GGGGACTGCGATAGTGGC	59.891	66.667	0.00	0.00	40.53	5.01
1400	1406	2.990479	GAAGTGGGGGACTGCGAT	59.010	61.111	0.00	0.00	34.02	4.58
1458	1464	3.175710	AGTTCAGGCCGTGGGGTT	61.176	61.111	0.00	0.00	34.97	4.11
1464	1470	2.032681	GCTTGGAGTTCAGGCCGT	59.967	61.111	0.00	0.00	41.93	5.68
1483	1489	0.771755	GAAGGGTTGGAGTTGAGGGT	59.228	55.000	0.00	0.00	0.00	4.34
1489	1495	2.067197	CCGAGGAAGGGTTGGAGTT	58.933	57.895	0.00	0.00	0.00	3.01
1513	1519	1.203052	CTTGGCAATTCGAGGCACAAT	59.797	47.619	0.00	0.00	41.56	2.71
1780	1788	0.680280	GAGGTAGGAGCGGTGACTCA	60.680	60.000	0.00	0.00	38.50	3.41
1822	1830	2.197605	TGAGGGCGACGACTCACAA	61.198	57.895	15.77	0.00	38.71	3.33
1823	1831	2.596338	TGAGGGCGACGACTCACA	60.596	61.111	15.77	5.06	38.71	3.58
1825	1833	3.371063	GGTGAGGGCGACGACTCA	61.371	66.667	15.77	15.77	41.13	3.41
1832	1840	3.706373	GCCAAGAGGTGAGGGCGA	61.706	66.667	0.00	0.00	36.58	5.54
1903	1911	1.118838	CCATCTCTGGAGACCTCACC	58.881	60.000	2.15	0.00	46.37	4.02
1909	1917	6.491745	TCATAGATACAACCATCTCTGGAGAC	59.508	42.308	2.15	0.00	46.37	3.36
1911	1919	6.907853	TCATAGATACAACCATCTCTGGAG	57.092	41.667	0.00	0.00	46.37	3.86
1956	2153	4.338682	TGATTTTTGCTTGCTTTTGCCAAT	59.661	33.333	0.00	0.00	46.87	3.16
1957	2154	3.693085	TGATTTTTGCTTGCTTTTGCCAA	59.307	34.783	0.00	0.00	46.87	4.52
2055	2270	3.364441	TGCATGCGCTTGGTCCAC	61.364	61.111	22.96	7.96	39.64	4.02
2090	2305	2.004583	TTGTTCCGCGGATAACTCAG	57.995	50.000	31.56	0.00	0.00	3.35
2112	2327	3.809832	GCGCTCATATTGGACAAGTACAT	59.190	43.478	0.00	0.00	0.00	2.29
2113	2328	3.194861	GCGCTCATATTGGACAAGTACA	58.805	45.455	0.00	0.00	0.00	2.90
2114	2329	2.544267	GGCGCTCATATTGGACAAGTAC	59.456	50.000	7.64	0.00	0.00	2.73
2115	2330	2.434336	AGGCGCTCATATTGGACAAGTA	59.566	45.455	7.64	0.00	0.00	2.24
2116	2331	1.210478	AGGCGCTCATATTGGACAAGT	59.790	47.619	7.64	0.00	0.00	3.16
2120	2335	1.069204	TCTCAGGCGCTCATATTGGAC	59.931	52.381	7.64	0.00	0.00	4.02
2125	2340	9.319143	GTATTTTTATATCTCAGGCGCTCATAT	57.681	33.333	7.64	5.02	0.00	1.78
2155	2370	7.359264	CGCTAAAATAGACCGGACAAATATCAG	60.359	40.741	9.46	0.00	0.00	2.90
2156	2371	6.422701	CGCTAAAATAGACCGGACAAATATCA	59.577	38.462	9.46	0.00	0.00	2.15
2163	2378	1.205179	TGCGCTAAAATAGACCGGACA	59.795	47.619	9.46	0.00	0.00	4.02
2201	2416	6.588204	TGAAAACACACATACCAGAGTAGTT	58.412	36.000	0.00	0.00	0.00	2.24
2243	2462	4.512944	CCATATCCATAGCACTTGTGTGAC	59.487	45.833	2.61	0.00	46.55	3.67
2249	2468	2.998670	CGCTCCATATCCATAGCACTTG	59.001	50.000	0.00	0.00	34.60	3.16
2255	2474	0.179100	CCCGCGCTCCATATCCATAG	60.179	60.000	5.56	0.00	0.00	2.23
2265	2484	3.733344	TAATGCTGACCCGCGCTCC	62.733	63.158	5.56	0.00	0.00	4.70
2275	2494	1.625315	ACCAGTGCAGAGTAATGCTGA	59.375	47.619	0.00	0.00	46.63	4.26
2279	2498	2.413112	CGAACACCAGTGCAGAGTAATG	59.587	50.000	0.00	0.00	0.00	1.90
2284	2503	0.946221	GGACGAACACCAGTGCAGAG	60.946	60.000	0.00	0.00	0.00	3.35
2289	2508	1.213094	GACACGGACGAACACCAGTG	61.213	60.000	0.00	0.00	37.66	3.66
2290	2509	1.066918	GACACGGACGAACACCAGT	59.933	57.895	0.00	0.00	0.00	4.00
2291	2510	2.014554	CGACACGGACGAACACCAG	61.015	63.158	0.00	0.00	0.00	4.00
2295	2514	2.656007	GCACGACACGGACGAACA	60.656	61.111	0.00	0.00	34.70	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.