AutoCloner

Multiple sequence alignment - TraesCS7D01G186800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G186800	chr7D	100.000	3458	0	0	1	3458	139311481	139308024	0.000000e+00	6386
1	TraesCS7D01G186800	chr7D	91.646	1185	88	5	1368	2542	140307728	140308911	0.000000e+00	1629
2	TraesCS7D01G186800	chr7D	79.206	957	117	37	2544	3458	140308965	140309881	1.070000e-164	590
3	TraesCS7D01G186800	chr7D	96.765	340	11	0	1037	1376	140307057	140307396	5.010000e-158	568
4	TraesCS7D01G186800	chr7D	98.625	291	4	0	1049	1339	554677227	554677517	1.840000e-142	516
5	TraesCS7D01G186800	chr7D	84.874	119	11	4	3311	3429	140312159	140312270	2.820000e-21	113
6	TraesCS7D01G186800	chr7B	89.767	3557	222	49	1	3458	104568846	104565333	0.000000e+00	4421
7	TraesCS7D01G186800	chr7B	92.481	1197	79	5	1356	2542	105506589	105507784	0.000000e+00	1701
8	TraesCS7D01G186800	chr7B	80.253	947	121	34	2552	3458	105507846	105508766	0.000000e+00	652
9	TraesCS7D01G186800	chr7B	95.455	154	7	0	1037	1190	105506143	105506296	2.670000e-61	246
10	TraesCS7D01G186800	chr7A	87.846	1843	141	35	1610	3415	139425777	139423981	0.000000e+00	2085
11	TraesCS7D01G186800	chr7A	91.944	1502	99	10	1061	2542	140652242	140653741	0.000000e+00	2084
12	TraesCS7D01G186800	chr7A	82.877	876	114	23	2	859	139426632	139425775	0.000000e+00	754
13	TraesCS7D01G186800	chr7A	80.713	954	111	43	2544	3458	140653795	140654714	0.000000e+00	675
14	TraesCS7D01G186800	chr1D	80.705	596	102	7	238	821	293617004	293617598	5.260000e-123	451
15	TraesCS7D01G186800	chr1D	81.336	434	67	11	411	835	246074806	246075234	1.190000e-89	340
16	TraesCS7D01G186800	chr4A	79.268	656	120	10	208	853	16484720	16485369	8.810000e-121	444
17	TraesCS7D01G186800	chr4D	81.239	549	87	10	238	773	505502998	505502453	2.470000e-116	429
18	TraesCS7D01G186800	chr1B	79.426	627	112	10	207	821	394913398	394914019	8.870000e-116	427
19	TraesCS7D01G186800	chr2B	78.648	651	109	22	208	841	119802549	119803186	4.160000e-109	405
20	TraesCS7D01G186800	chr2B	76.541	665	116	29	208	847	120245490	120246139	9.250000e-86	327
21	TraesCS7D01G186800	chr5A	78.387	657	109	25	208	847	54458161	54458801	2.500000e-106	396
22	TraesCS7D01G186800	chr3D	77.855	578	109	13	208	774	74457822	74458391	1.190000e-89	340
23	TraesCS7D01G186800	chr3D	76.296	270	39	15	207	475	316466352	316466107	1.690000e-23	121

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G186800	chr7D	139308024	139311481	3457	True	6386.000000	6386	100.000000	1	3458	1	chr7D.!!$R1	3457
1	TraesCS7D01G186800	chr7D	140307057	140312270	5213	False	725.000000	1629	88.122750	1037	3458	4	chr7D.!!$F2	2421
2	TraesCS7D01G186800	chr7B	104565333	104568846	3513	True	4421.000000	4421	89.767000	1	3458	1	chr7B.!!$R1	3457
3	TraesCS7D01G186800	chr7B	105506143	105508766	2623	False	866.333333	1701	89.396333	1037	3458	3	chr7B.!!$F1	2421
4	TraesCS7D01G186800	chr7A	139423981	139426632	2651	True	1419.500000	2085	85.361500	2	3415	2	chr7A.!!$R1	3413
5	TraesCS7D01G186800	chr7A	140652242	140654714	2472	False	1379.500000	2084	86.328500	1061	3458	2	chr7A.!!$F1	2397
6	TraesCS7D01G186800	chr1D	293617004	293617598	594	False	451.000000	451	80.705000	238	821	1	chr1D.!!$F2	583
7	TraesCS7D01G186800	chr4A	16484720	16485369	649	False	444.000000	444	79.268000	208	853	1	chr4A.!!$F1	645
8	TraesCS7D01G186800	chr4D	505502453	505502998	545	True	429.000000	429	81.239000	238	773	1	chr4D.!!$R1	535
9	TraesCS7D01G186800	chr1B	394913398	394914019	621	False	427.000000	427	79.426000	207	821	1	chr1B.!!$F1	614
10	TraesCS7D01G186800	chr2B	119802549	119803186	637	False	405.000000	405	78.648000	208	841	1	chr2B.!!$F1	633
11	TraesCS7D01G186800	chr2B	120245490	120246139	649	False	327.000000	327	76.541000	208	847	1	chr2B.!!$F2	639
12	TraesCS7D01G186800	chr5A	54458161	54458801	640	False	396.000000	396	78.387000	208	847	1	chr5A.!!$F1	639
13	TraesCS7D01G186800	chr3D	74457822	74458391	569	False	340.000000	340	77.855000	208	774	1	chr3D.!!$F1	566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
964	1034	1.134965	CGGCCCAAACAAAAACTGTCA	60.135	47.619	0.00	0.00	37.23	3.58	F
1693	2273	0.530870	GTCTATGGCCGCCTCAGAAC	60.531	60.000	11.61	4.76	0.00	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2007	2587	0.575859	CTGACAGCGAATCTGATGCG	59.424	55.0	13.72	13.72	45.72	4.73	R
3025	3700	0.776810	TTGCCAGGATGTTCCCTCAA	59.223	50.0	0.00	0.00	37.19	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	1.140852	TGGTAGCTGCATTTAGGCGAT	59.859	47.619	3.61	0.00	36.28	4.58
116	128	7.123383	TCCTGATAAGATGTTGTAGGTCACTA	58.877	38.462	0.00	0.00	0.00	2.74
119	131	9.900710	CTGATAAGATGTTGTAGGTCACTATAC	57.099	37.037	0.00	0.00	0.00	1.47
156	168	8.931568	GGGAGTACTACTATTTTTATCTTGGGA	58.068	37.037	4.77	0.00	0.00	4.37
160	172	9.761504	GTACTACTATTTTTATCTTGGGACTCC	57.238	37.037	0.00	0.00	0.00	3.85
203	217	3.274288	GAAAGCTGAGTTCGATCCCAAT	58.726	45.455	0.00	0.00	0.00	3.16
354	373	9.797556	ATCTTAAAAACACCTTCTTTGTTGTAC	57.202	29.630	0.00	0.00	37.26	2.90
406	442	3.988976	AAGAGGCTGCAATTAGACTGA	57.011	42.857	0.50	0.00	35.77	3.41
483	519	1.675641	GCACCTTGAGCCGTCCATT	60.676	57.895	0.00	0.00	0.00	3.16
499	537	5.221048	CCGTCCATTCAAAAAGACAAGAAGT	60.221	40.000	0.00	0.00	0.00	3.01
517	555	7.974501	ACAAGAAGTCTTAATCGATGAACGTAT	59.025	33.333	0.00	0.00	37.68	3.06
533	571	4.497291	ACGTATTTGAGCCAGGGATAAA	57.503	40.909	0.00	0.00	0.00	1.40
575	613	7.117523	GCTGTCAGATCATAATATCTTCACCAC	59.882	40.741	3.32	0.00	33.87	4.16
578	616	7.327275	GTCAGATCATAATATCTTCACCACGAC	59.673	40.741	0.00	0.00	33.87	4.34
586	625	1.674611	CTTCACCACGACGTCGATGC	61.675	60.000	41.52	2.48	43.02	3.91
596	635	2.719556	CGACGTCGATGCGAGATTTTAT	59.280	45.455	33.35	0.00	43.02	1.40
648	688	5.241506	AGGTTTGACACACCATCATAAACTG	59.758	40.000	13.19	0.00	36.67	3.16
659	699	5.934625	ACCATCATAAACTGATTAGATCCGC	59.065	40.000	0.00	0.00	42.07	5.54
662	706	5.784177	TCATAAACTGATTAGATCCGCTCC	58.216	41.667	0.00	0.00	0.00	4.70
681	725	4.301628	CTCCAATCTGCAAGGACAAAAAC	58.698	43.478	0.00	0.00	0.00	2.43
696	740	6.004574	GGACAAAAACCTCTCTAACCTCAAT	58.995	40.000	0.00	0.00	0.00	2.57
698	742	5.770162	ACAAAAACCTCTCTAACCTCAATGG	59.230	40.000	0.00	0.00	42.93	3.16
699	743	3.636153	AACCTCTCTAACCTCAATGGC	57.364	47.619	0.00	0.00	40.22	4.40
700	744	2.551270	ACCTCTCTAACCTCAATGGCA	58.449	47.619	0.00	0.00	40.22	4.92
702	746	3.135530	ACCTCTCTAACCTCAATGGCATC	59.864	47.826	0.00	0.00	40.22	3.91
703	747	3.388308	CTCTCTAACCTCAATGGCATCG	58.612	50.000	0.00	0.00	40.22	3.84
704	748	1.869767	CTCTAACCTCAATGGCATCGC	59.130	52.381	0.00	0.00	40.22	4.58
719	767	2.854185	GCATCGCCAAAAATACAAGAGC	59.146	45.455	0.00	0.00	0.00	4.09
745	794	9.277565	CAAATTTACTCTCACAAAATACGATGG	57.722	33.333	0.00	0.00	0.00	3.51
793	843	8.571336	CATAGAACTTTTGAAGATGTGAGGTTT	58.429	33.333	0.00	0.00	0.00	3.27
835	888	2.581354	CAGTGAGAAGCGAGGGGG	59.419	66.667	0.00	0.00	0.00	5.40
837	890	3.706373	GTGAGAAGCGAGGGGGCA	61.706	66.667	0.00	0.00	34.64	5.36
871	941	1.227147	GCGCCGTTAGGTATGCTCA	60.227	57.895	0.00	0.00	40.50	4.26
926	996	2.665649	AGACAAATGACGCGACCATA	57.334	45.000	15.93	0.00	0.00	2.74
943	1013	3.756434	ACCATACAGCGCACTAAATGTTT	59.244	39.130	11.47	0.00	0.00	2.83
953	1023	3.313690	CACTAAATGTTTCGGCCCAAAC	58.686	45.455	18.05	18.05	36.87	2.93
959	1029	2.347731	TGTTTCGGCCCAAACAAAAAC	58.652	42.857	24.14	10.79	42.11	2.43
960	1030	2.028020	TGTTTCGGCCCAAACAAAAACT	60.028	40.909	24.14	0.00	42.11	2.66
961	1031	2.301577	TTCGGCCCAAACAAAAACTG	57.698	45.000	0.00	0.00	0.00	3.16
962	1032	1.187087	TCGGCCCAAACAAAAACTGT	58.813	45.000	0.00	0.00	41.27	3.55
963	1033	1.135333	TCGGCCCAAACAAAAACTGTC	59.865	47.619	0.00	0.00	37.23	3.51
964	1034	1.134965	CGGCCCAAACAAAAACTGTCA	60.135	47.619	0.00	0.00	37.23	3.58
965	1035	2.276201	GGCCCAAACAAAAACTGTCAC	58.724	47.619	0.00	0.00	37.23	3.67
966	1036	2.093711	GGCCCAAACAAAAACTGTCACT	60.094	45.455	0.00	0.00	37.23	3.41
967	1037	3.186909	GCCCAAACAAAAACTGTCACTC	58.813	45.455	0.00	0.00	37.23	3.51
968	1038	3.434637	CCCAAACAAAAACTGTCACTCG	58.565	45.455	0.00	0.00	37.23	4.18
969	1039	3.127895	CCCAAACAAAAACTGTCACTCGA	59.872	43.478	0.00	0.00	37.23	4.04
970	1040	4.202010	CCCAAACAAAAACTGTCACTCGAT	60.202	41.667	0.00	0.00	37.23	3.59
971	1041	4.970003	CCAAACAAAAACTGTCACTCGATC	59.030	41.667	0.00	0.00	37.23	3.69
972	1042	4.813296	AACAAAAACTGTCACTCGATCC	57.187	40.909	0.00	0.00	37.23	3.36
973	1043	3.139077	ACAAAAACTGTCACTCGATCCC	58.861	45.455	0.00	0.00	29.87	3.85
974	1044	2.474410	AAAACTGTCACTCGATCCCC	57.526	50.000	0.00	0.00	0.00	4.81
975	1045	1.645710	AAACTGTCACTCGATCCCCT	58.354	50.000	0.00	0.00	0.00	4.79
976	1046	2.526888	AACTGTCACTCGATCCCCTA	57.473	50.000	0.00	0.00	0.00	3.53
977	1047	2.060050	ACTGTCACTCGATCCCCTAG	57.940	55.000	0.00	0.00	0.00	3.02
978	1048	1.323412	CTGTCACTCGATCCCCTAGG	58.677	60.000	0.06	0.06	0.00	3.02
992	1062	4.086457	TCCCCTAGGAGAAACAAAAATGC	58.914	43.478	11.48	0.00	37.19	3.56
993	1063	4.089361	CCCCTAGGAGAAACAAAAATGCT	58.911	43.478	11.48	0.00	33.47	3.79
994	1064	5.014755	TCCCCTAGGAGAAACAAAAATGCTA	59.985	40.000	11.48	0.00	37.19	3.49
995	1065	5.358160	CCCCTAGGAGAAACAAAAATGCTAG	59.642	44.000	11.48	0.00	34.54	3.42
999	1069	8.023706	CCTAGGAGAAACAAAAATGCTAGAAAC	58.976	37.037	1.05	0.00	36.21	2.78
1023	1093	1.660575	AGTCGAAGTCAACACCGCG	60.661	57.895	0.00	0.00	0.00	6.46
1025	1095	4.072088	CGAAGTCAACACCGCGGC	62.072	66.667	28.58	7.73	0.00	6.53
1420	1957	2.203070	CCTCCGCAGTGGCCATAC	60.203	66.667	9.72	0.00	37.80	2.39
1424	1961	3.797353	CGCAGTGGCCATACCCCT	61.797	66.667	9.72	0.00	37.83	4.79
1480	2039	0.813184	CGGGGTCGTCACTAGCTTTA	59.187	55.000	0.00	0.00	0.00	1.85
1638	2197	2.743928	CCTGCCACAGCTTCCGAC	60.744	66.667	0.00	0.00	40.80	4.79
1660	2222	3.366883	CGCTCTATATTGGCCAGACTCTC	60.367	52.174	5.11	0.00	0.00	3.20
1693	2273	0.530870	GTCTATGGCCGCCTCAGAAC	60.531	60.000	11.61	4.76	0.00	3.01
1752	2332	2.278336	CGGAATTCGAGCGCCGTA	60.278	61.111	16.00	8.74	42.43	4.02
1776	2356	2.792116	GGCGTTCGATCTGAATTCTCTC	59.208	50.000	7.05	0.24	39.21	3.20
1851	2431	1.406341	GCAATACCACCGACCAAGCTA	60.406	52.381	0.00	0.00	0.00	3.32
2016	2596	1.306148	CAGATGTTGCCGCATCAGAT	58.694	50.000	16.53	0.00	45.58	2.90
2473	3060	6.153680	AGGTGAATAGAGGAACAAGACTACAG	59.846	42.308	0.00	0.00	0.00	2.74
2501	3088	8.514594	TGTAAGAAATCTCAAATTCGATTGCTT	58.485	29.630	16.37	16.37	44.07	3.91
2709	3353	6.771267	CCTTTGTAACTGAGGTAGTCCTTTTT	59.229	38.462	0.00	0.00	45.24	1.94
3283	3982	2.318908	TGCTGGAATTTCAAACTGGCT	58.681	42.857	0.00	0.00	0.00	4.75
3286	3985	2.036217	CTGGAATTTCAAACTGGCTGCA	59.964	45.455	0.50	0.00	0.00	4.41
3421	4127	5.043657	AGCCCATTAAGTAAAACCCCACTAT	60.044	40.000	0.00	0.00	0.00	2.12
3422	4128	5.659525	GCCCATTAAGTAAAACCCCACTATT	59.340	40.000	0.00	0.00	0.00	1.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	3.727258	CCCATGGCTCGGACCCAA	61.727	66.667	6.09	0.00	35.67	4.12
91	92	5.958380	AGTGACCTACAACATCTTATCAGGA	59.042	40.000	0.00	0.00	0.00	3.86
187	201	6.743575	AAAACTTATTGGGATCGAACTCAG	57.256	37.500	0.00	0.00	0.00	3.35
328	346	9.797556	GTACAACAAAGAAGGTGTTTTTAAGAT	57.202	29.630	0.00	0.00	37.09	2.40
406	442	6.636850	GTGAAAAAGTGATAACATCGTTGCTT	59.363	34.615	0.00	0.00	0.00	3.91
499	537	6.200286	GGCTCAAATACGTTCATCGATTAAGA	59.800	38.462	0.00	0.00	42.86	2.10
533	571	1.229658	AGCCTGCACTTCTAGGGGT	60.230	57.895	0.00	0.00	34.58	4.95
575	613	0.914551	AAAATCTCGCATCGACGTCG	59.085	50.000	31.30	31.30	41.45	5.12
578	616	4.538700	GAGATAAAATCTCGCATCGACG	57.461	45.455	1.39	0.00	45.50	5.12
596	635	4.952957	TGTTGGTTTGATTCTTTGTGGAGA	59.047	37.500	0.00	0.00	0.00	3.71
659	699	4.301628	GTTTTTGTCCTTGCAGATTGGAG	58.698	43.478	0.00	0.00	0.00	3.86
662	706	4.038402	AGAGGTTTTTGTCCTTGCAGATTG	59.962	41.667	0.00	0.00	35.20	2.67
681	725	3.737850	GATGCCATTGAGGTTAGAGAGG	58.262	50.000	0.00	0.00	40.61	3.69
698	742	2.854185	GCTCTTGTATTTTTGGCGATGC	59.146	45.455	0.00	0.00	0.00	3.91
699	743	4.095410	TGCTCTTGTATTTTTGGCGATG	57.905	40.909	0.00	0.00	0.00	3.84
700	744	4.782019	TTGCTCTTGTATTTTTGGCGAT	57.218	36.364	0.00	0.00	0.00	4.58
702	746	5.844301	AATTTGCTCTTGTATTTTTGGCG	57.156	34.783	0.00	0.00	0.00	5.69
703	747	8.310406	AGTAAATTTGCTCTTGTATTTTTGGC	57.690	30.769	2.58	0.00	0.00	4.52
704	748	9.696917	AGAGTAAATTTGCTCTTGTATTTTTGG	57.303	29.630	27.20	0.00	46.06	3.28
716	760	8.227791	TCGTATTTTGTGAGAGTAAATTTGCTC	58.772	33.333	24.00	24.00	39.78	4.26
719	767	9.277565	CCATCGTATTTTGTGAGAGTAAATTTG	57.722	33.333	0.00	0.00	0.00	2.32
745	794	9.599322	CTATGTTCTTTGTCAACATTTAGTGAC	57.401	33.333	3.53	0.00	40.83	3.67
793	843	2.607750	GGCACTCAGAGGTGGGGA	60.608	66.667	1.53	0.00	37.65	4.81
821	874	2.063015	TTTTGCCCCCTCGCTTCTCA	62.063	55.000	0.00	0.00	0.00	3.27
845	898	2.047655	CTAACGGCGCCACAAGGA	60.048	61.111	28.98	3.63	36.89	3.36
926	996	1.196808	CCGAAACATTTAGTGCGCTGT	59.803	47.619	10.80	0.00	0.00	4.40
931	1001	0.885196	TGGGCCGAAACATTTAGTGC	59.115	50.000	0.00	0.00	0.00	4.40
943	1013	1.135333	GACAGTTTTTGTTTGGGCCGA	59.865	47.619	0.00	0.00	41.05	5.54
953	1023	2.484264	GGGGATCGAGTGACAGTTTTTG	59.516	50.000	0.00	0.00	0.00	2.44
954	1024	2.372172	AGGGGATCGAGTGACAGTTTTT	59.628	45.455	0.00	0.00	0.00	1.94
959	1029	1.133761	TCCTAGGGGATCGAGTGACAG	60.134	57.143	9.46	0.00	36.57	3.51
960	1030	0.924090	TCCTAGGGGATCGAGTGACA	59.076	55.000	9.46	0.00	36.57	3.58
961	1031	1.143277	TCTCCTAGGGGATCGAGTGAC	59.857	57.143	7.47	0.00	41.36	3.67
962	1032	1.519498	TCTCCTAGGGGATCGAGTGA	58.481	55.000	7.47	0.00	41.36	3.41
963	1033	2.362717	GTTTCTCCTAGGGGATCGAGTG	59.637	54.545	13.54	0.00	41.36	3.51
964	1034	2.024273	TGTTTCTCCTAGGGGATCGAGT	60.024	50.000	13.54	0.00	41.36	4.18
965	1035	2.667470	TGTTTCTCCTAGGGGATCGAG	58.333	52.381	13.54	0.00	41.36	4.04
966	1036	2.840640	TGTTTCTCCTAGGGGATCGA	57.159	50.000	13.54	0.00	41.36	3.59
967	1037	3.906720	TTTGTTTCTCCTAGGGGATCG	57.093	47.619	13.54	0.00	41.36	3.69
968	1038	5.163509	GCATTTTTGTTTCTCCTAGGGGATC	60.164	44.000	13.54	9.70	41.36	3.36
969	1039	4.711846	GCATTTTTGTTTCTCCTAGGGGAT	59.288	41.667	13.54	0.00	41.36	3.85
970	1040	4.086457	GCATTTTTGTTTCTCCTAGGGGA	58.914	43.478	7.47	7.47	39.70	4.81
971	1041	4.089361	AGCATTTTTGTTTCTCCTAGGGG	58.911	43.478	9.46	5.31	0.00	4.79
972	1042	6.180472	TCTAGCATTTTTGTTTCTCCTAGGG	58.820	40.000	9.46	0.00	0.00	3.53
973	1043	7.687941	TTCTAGCATTTTTGTTTCTCCTAGG	57.312	36.000	0.82	0.82	0.00	3.02
974	1044	8.567948	TGTTTCTAGCATTTTTGTTTCTCCTAG	58.432	33.333	0.00	0.00	0.00	3.02
975	1045	8.458573	TGTTTCTAGCATTTTTGTTTCTCCTA	57.541	30.769	0.00	0.00	0.00	2.94
976	1046	7.346751	TGTTTCTAGCATTTTTGTTTCTCCT	57.653	32.000	0.00	0.00	0.00	3.69
977	1047	7.653311	ACATGTTTCTAGCATTTTTGTTTCTCC	59.347	33.333	0.00	0.00	0.00	3.71
978	1048	8.579682	ACATGTTTCTAGCATTTTTGTTTCTC	57.420	30.769	0.00	0.00	0.00	2.87
979	1049	8.196771	TGACATGTTTCTAGCATTTTTGTTTCT	58.803	29.630	0.00	0.00	0.00	2.52
980	1050	8.351495	TGACATGTTTCTAGCATTTTTGTTTC	57.649	30.769	0.00	0.00	0.00	2.78
981	1051	7.981225	ACTGACATGTTTCTAGCATTTTTGTTT	59.019	29.630	0.00	0.00	0.00	2.83
982	1052	7.491682	ACTGACATGTTTCTAGCATTTTTGTT	58.508	30.769	0.00	0.00	0.00	2.83
983	1053	7.042797	ACTGACATGTTTCTAGCATTTTTGT	57.957	32.000	0.00	0.00	0.00	2.83
984	1054	6.303970	CGACTGACATGTTTCTAGCATTTTTG	59.696	38.462	0.00	0.00	0.00	2.44
985	1055	6.204688	TCGACTGACATGTTTCTAGCATTTTT	59.795	34.615	0.00	0.00	0.00	1.94
986	1056	5.700832	TCGACTGACATGTTTCTAGCATTTT	59.299	36.000	0.00	0.00	0.00	1.82
987	1057	5.237815	TCGACTGACATGTTTCTAGCATTT	58.762	37.500	0.00	0.00	0.00	2.32
988	1058	4.820897	TCGACTGACATGTTTCTAGCATT	58.179	39.130	0.00	0.00	0.00	3.56
989	1059	4.456280	TCGACTGACATGTTTCTAGCAT	57.544	40.909	0.00	0.00	0.00	3.79
990	1060	3.934457	TCGACTGACATGTTTCTAGCA	57.066	42.857	0.00	0.00	0.00	3.49
991	1061	4.238514	ACTTCGACTGACATGTTTCTAGC	58.761	43.478	0.00	0.00	0.00	3.42
992	1062	5.461526	TGACTTCGACTGACATGTTTCTAG	58.538	41.667	0.00	0.00	0.00	2.43
993	1063	5.447624	TGACTTCGACTGACATGTTTCTA	57.552	39.130	0.00	0.00	0.00	2.10
994	1064	4.322080	TGACTTCGACTGACATGTTTCT	57.678	40.909	0.00	0.00	0.00	2.52
995	1065	4.270084	TGTTGACTTCGACTGACATGTTTC	59.730	41.667	0.00	0.00	0.00	2.78
999	1069	2.476619	GGTGTTGACTTCGACTGACATG	59.523	50.000	0.00	0.00	0.00	3.21
1023	1093	0.179054	GTGGGGAATTCTCGGTAGCC	60.179	60.000	5.23	0.00	0.00	3.93
1025	1095	0.468648	GGGTGGGGAATTCTCGGTAG	59.531	60.000	5.23	0.00	0.00	3.18
1139	1209	2.364448	AGGCGAGAGGGGAGGAAC	60.364	66.667	0.00	0.00	0.00	3.62
1223	1293	3.077556	TGCGGAGGAAGGAGAGGC	61.078	66.667	0.00	0.00	0.00	4.70
1259	1329	4.565850	GAGCGGGGGAGGGAGGAT	62.566	72.222	0.00	0.00	0.00	3.24
1638	2197	2.560542	AGAGTCTGGCCAATATAGAGCG	59.439	50.000	7.01	0.00	0.00	5.03
1660	2222	2.544685	CATAGACAGCACGGAAGAAGG	58.455	52.381	0.00	0.00	0.00	3.46
1752	2332	2.093973	AGAATTCAGATCGAACGCCACT	60.094	45.455	8.44	0.00	36.12	4.00
1791	2371	1.452108	CACCTCCTTCCGCCCAATC	60.452	63.158	0.00	0.00	0.00	2.67
1851	2431	4.223125	TGCCCAGCAAGCCAACCT	62.223	61.111	0.00	0.00	34.76	3.50
1970	2550	1.305046	TCGTCCTTCTCCCTCACCC	60.305	63.158	0.00	0.00	0.00	4.61
2007	2587	0.575859	CTGACAGCGAATCTGATGCG	59.424	55.000	13.72	13.72	45.72	4.73
2016	2596	3.058293	CCTTAAACAATGCTGACAGCGAA	60.058	43.478	22.00	6.44	46.26	4.70
2473	3060	8.951969	GCAATCGAATTTGAGATTTCTTACATC	58.048	33.333	2.94	0.00	35.14	3.06
2526	3113	6.155827	TCTGAACTGAAACAAACACCAAAAG	58.844	36.000	0.00	0.00	0.00	2.27
2605	3246	6.646653	TGTGATCTGTGTTACTGTTGATCTTC	59.353	38.462	0.00	0.00	33.57	2.87
3025	3700	0.776810	TTGCCAGGATGTTCCCTCAA	59.223	50.000	0.00	0.00	37.19	3.02
3026	3701	1.002069	ATTGCCAGGATGTTCCCTCA	58.998	50.000	0.00	0.00	37.19	3.86
3028	3703	2.629017	AAATTGCCAGGATGTTCCCT	57.371	45.000	0.00	0.00	37.19	4.20
3080	3776	4.273148	AGTGGAAGACATGAGTTACACC	57.727	45.455	18.02	6.03	0.00	4.16
3283	3982	4.040339	TGATAGTTTCTGTCAGAACCTGCA	59.960	41.667	19.80	15.01	33.26	4.41
3286	3985	6.831976	ACTTTGATAGTTTCTGTCAGAACCT	58.168	36.000	14.98	15.52	33.26	3.50

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.