Multiple sequence alignment - TraesCS7D01G186100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G186100 chr7D 100.000 4728 0 0 1 4728 139054932 139050205 0.000000e+00 8732.0
1 TraesCS7D01G186100 chr7D 89.500 200 16 3 1 196 139066138 139065940 1.020000e-61 248.0
2 TraesCS7D01G186100 chr7D 88.276 145 11 6 286 425 139060175 139060032 8.140000e-38 169.0
3 TraesCS7D01G186100 chr7D 74.813 401 63 15 4357 4722 636775298 636774901 3.810000e-31 147.0
4 TraesCS7D01G186100 chr7D 89.899 99 8 2 4353 4450 39185359 39185456 4.970000e-25 126.0
5 TraesCS7D01G186100 chr7B 93.707 2479 129 13 1890 4351 104032250 104029782 0.000000e+00 3688.0
6 TraesCS7D01G186100 chr7B 90.040 1255 84 23 5 1229 104034027 104032784 0.000000e+00 1587.0
7 TraesCS7D01G186100 chr7B 87.555 458 36 8 1326 1776 104032697 104032254 1.170000e-140 510.0
8 TraesCS7D01G186100 chr7B 90.816 196 17 1 1 196 104055324 104055130 1.310000e-65 261.0
9 TraesCS7D01G186100 chr7B 88.679 212 20 4 1 210 104047744 104047535 6.070000e-64 255.0
10 TraesCS7D01G186100 chr7B 90.826 109 10 0 1778 1886 676970062 676970170 3.810000e-31 147.0
11 TraesCS7D01G186100 chr7B 77.574 272 34 12 4356 4602 203619006 203618737 6.380000e-29 139.0
12 TraesCS7D01G186100 chr7B 92.754 69 5 0 126 194 104050440 104050372 3.010000e-17 100.0
13 TraesCS7D01G186100 chr7A 92.134 2479 143 25 1890 4352 138959587 138957145 0.000000e+00 3450.0
14 TraesCS7D01G186100 chr7A 86.924 673 30 22 654 1302 138960730 138960092 0.000000e+00 702.0
15 TraesCS7D01G186100 chr7A 90.529 454 32 4 1326 1776 138960035 138959590 1.470000e-164 590.0
16 TraesCS7D01G186100 chr7A 91.304 161 13 1 1 161 138965808 138965649 7.970000e-53 219.0
17 TraesCS7D01G186100 chr2A 88.180 846 78 14 2359 3196 345885428 345884597 0.000000e+00 989.0
18 TraesCS7D01G186100 chr2A 92.361 144 11 0 3296 3439 345884591 345884448 6.200000e-49 206.0
19 TraesCS7D01G186100 chr2A 93.333 105 6 1 2258 2361 345885672 345885568 2.280000e-33 154.0
20 TraesCS7D01G186100 chr2A 92.453 106 8 0 1783 1888 767024252 767024147 8.190000e-33 152.0
21 TraesCS7D01G186100 chr2A 90.654 107 8 1 1783 1889 767143972 767144076 1.770000e-29 141.0
22 TraesCS7D01G186100 chr4D 79.293 396 46 19 4356 4721 230917561 230917172 1.310000e-60 244.0
23 TraesCS7D01G186100 chr4D 91.071 112 9 1 1779 1889 482692523 482692634 2.950000e-32 150.0
24 TraesCS7D01G186100 chr6D 78.756 386 58 15 4359 4721 179844130 179844514 2.200000e-58 237.0
25 TraesCS7D01G186100 chr6D 90.654 107 10 0 1782 1888 242998952 242999058 4.930000e-30 143.0
26 TraesCS7D01G186100 chrUn 77.045 379 69 12 4357 4721 73657196 73657570 8.020000e-48 202.0
27 TraesCS7D01G186100 chrUn 76.580 269 45 16 4456 4710 290006675 290006411 1.070000e-26 132.0
28 TraesCS7D01G186100 chrUn 75.735 272 48 15 4453 4710 288970590 288970857 2.310000e-23 121.0
29 TraesCS7D01G186100 chr3D 76.864 389 65 15 4357 4727 144180177 144179796 3.730000e-46 196.0
30 TraesCS7D01G186100 chr1D 76.486 387 64 14 4360 4723 127170832 127170450 8.080000e-43 185.0
31 TraesCS7D01G186100 chr5D 79.921 254 47 3 4478 4727 384984642 384984895 2.910000e-42 183.0
32 TraesCS7D01G186100 chr5D 79.098 244 47 3 4482 4722 41512761 41513003 1.050000e-36 165.0
33 TraesCS7D01G186100 chr5D 90.244 123 10 2 1779 1899 229363497 229363375 4.900000e-35 159.0
34 TraesCS7D01G186100 chr5D 75.000 404 63 23 4353 4725 360137049 360136653 8.190000e-33 152.0
35 TraesCS7D01G186100 chr5D 89.899 99 7 3 4359 4454 41479316 41479414 1.790000e-24 124.0
36 TraesCS7D01G186100 chr2D 78.788 264 47 4 4464 4721 30988815 30988555 8.140000e-38 169.0
37 TraesCS7D01G186100 chr2D 92.308 117 7 2 1774 1889 334318875 334318760 1.050000e-36 165.0
38 TraesCS7D01G186100 chr2D 80.374 214 38 2 4500 4709 579073712 579073499 4.900000e-35 159.0
39 TraesCS7D01G186100 chr2D 91.579 95 7 1 4359 4453 579116679 579116586 3.840000e-26 130.0
40 TraesCS7D01G186100 chr2D 84.211 95 13 2 4360 4452 372507707 372507613 1.810000e-14 91.6
41 TraesCS7D01G186100 chr2B 91.071 112 9 1 1779 1889 799538001 799538112 2.950000e-32 150.0
42 TraesCS7D01G186100 chr2B 75.686 255 54 6 4461 4710 540709651 540709902 2.310000e-23 121.0
43 TraesCS7D01G186100 chr1A 91.509 106 9 0 1782 1887 307696674 307696779 3.810000e-31 147.0
44 TraesCS7D01G186100 chr1A 83.333 156 18 3 2126 2278 350409917 350409767 2.290000e-28 137.0
45 TraesCS7D01G186100 chr6B 83.333 156 18 3 2126 2278 159428373 159428223 2.290000e-28 137.0
46 TraesCS7D01G186100 chr5A 88.785 107 8 4 4350 4453 256582705 256582600 1.380000e-25 128.0
47 TraesCS7D01G186100 chr4A 87.273 110 8 5 4360 4465 711677461 711677568 2.310000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G186100 chr7D 139050205 139054932 4727 True 8732.000000 8732 100.000000 1 4728 1 chr7D.!!$R1 4727
1 TraesCS7D01G186100 chr7B 104029782 104034027 4245 True 1928.333333 3688 90.434000 5 4351 3 chr7B.!!$R3 4346
2 TraesCS7D01G186100 chr7A 138957145 138960730 3585 True 1580.666667 3450 89.862333 654 4352 3 chr7A.!!$R2 3698
3 TraesCS7D01G186100 chr2A 345884448 345885672 1224 True 449.666667 989 91.291333 2258 3439 3 chr2A.!!$R2 1181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 964 0.102844 TTCCCTTGTCGTTCGTTCGT 59.897 50.0 2.67 0.0 0.0 3.85 F
923 966 0.231279 CCCTTGTCGTTCGTTCGTTG 59.769 55.0 2.67 0.0 0.0 4.10 F
1751 1848 0.312416 CTCCCTCCGCTCGAACATAG 59.688 60.0 0.00 0.0 0.0 2.23 F
1792 1889 0.537371 AAGACTTTGGCCCTGTTCGG 60.537 55.0 0.00 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 1971 0.036306 ACTTTCGCCCTGTTCGGAAT 59.964 50.00 0.00 0.0 33.16 3.01 R
1875 1972 0.179040 AACTTTCGCCCTGTTCGGAA 60.179 50.00 0.00 0.0 33.16 4.30 R
3589 3844 0.178967 TGGGTGCATTGGAGAAAGCA 60.179 50.00 0.00 0.0 34.10 3.91 R
3764 4019 3.812609 ACAAACAAAATTGGGCCGAAATC 59.187 39.13 3.59 0.0 34.56 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.068215 AGGTACATGCTCATACTAGGTCT 57.932 43.478 0.00 0.00 0.00 3.85
55 56 0.179081 GGCCCAAGAGTAGCCGTAAG 60.179 60.000 0.00 0.00 36.84 2.34
72 73 6.599638 AGCCGTAAGATTTTATTTTCTCTGCT 59.400 34.615 0.00 0.00 43.02 4.24
73 74 7.121315 AGCCGTAAGATTTTATTTTCTCTGCTT 59.879 33.333 0.00 0.00 43.02 3.91
74 75 8.395633 GCCGTAAGATTTTATTTTCTCTGCTTA 58.604 33.333 0.00 0.00 43.02 3.09
84 85 5.818136 TTTTCTCTGCTTACATATGCACC 57.182 39.130 1.58 0.00 35.20 5.01
101 102 2.165167 CACCTGGATGCTTTCACACAT 58.835 47.619 0.00 0.00 0.00 3.21
103 104 1.399440 CCTGGATGCTTTCACACATCG 59.601 52.381 0.00 0.00 42.94 3.84
104 105 1.399440 CTGGATGCTTTCACACATCGG 59.601 52.381 0.00 0.00 42.94 4.18
112 113 0.612744 TTCACACATCGGATCTGGCA 59.387 50.000 0.62 0.00 0.00 4.92
130 131 4.941103 TGGGTTTCACCATGGTGG 57.059 55.556 38.12 22.83 45.43 4.61
135 136 3.012274 TGGGTTTCACCATGGTGGATATT 59.988 43.478 38.12 3.78 45.43 1.28
196 197 6.940867 TGCATAATATAGTACTCACTCCGTCT 59.059 38.462 0.00 0.00 36.14 4.18
197 198 8.098912 TGCATAATATAGTACTCACTCCGTCTA 58.901 37.037 0.00 0.00 36.14 2.59
198 199 8.944029 GCATAATATAGTACTCACTCCGTCTAA 58.056 37.037 0.00 0.00 36.14 2.10
213 214 7.062371 CACTCCGTCTAAAAATACTTGTCAGAG 59.938 40.741 0.00 0.00 0.00 3.35
218 219 9.746711 CGTCTAAAAATACTTGTCAGAGAAATG 57.253 33.333 0.00 0.00 0.00 2.32
259 260 9.829507 ATCTATTTCTCTGACAAGTATTTGAGG 57.170 33.333 4.81 0.00 37.73 3.86
558 564 7.687941 AAGAAATTGACCGAATACAGAACAT 57.312 32.000 0.00 0.00 0.00 2.71
567 573 7.921214 TGACCGAATACAGAACATTATCTCTTC 59.079 37.037 0.00 0.00 0.00 2.87
568 574 6.918569 ACCGAATACAGAACATTATCTCTTCG 59.081 38.462 0.00 0.00 35.16 3.79
660 666 9.929180 AAAGCTCCTTTATTTGATCCTAAAAAC 57.071 29.630 0.00 0.00 31.35 2.43
689 695 1.352083 TATGCCCATCACTAGCCTCC 58.648 55.000 0.00 0.00 0.00 4.30
718 724 5.577554 ACAACAAAAACGTGGAAAATACACC 59.422 36.000 0.00 0.00 35.46 4.16
807 820 0.390124 TAAAACTCCACGGTCGCACT 59.610 50.000 0.00 0.00 0.00 4.40
860 887 2.604174 CGGGCGGCGCTATTTAAGG 61.604 63.158 32.30 8.11 0.00 2.69
888 915 4.035102 GACCACCAGCTCCCCCAC 62.035 72.222 0.00 0.00 0.00 4.61
916 959 2.380410 CGCCTTCCCTTGTCGTTCG 61.380 63.158 0.00 0.00 0.00 3.95
921 964 0.102844 TTCCCTTGTCGTTCGTTCGT 59.897 50.000 2.67 0.00 0.00 3.85
923 966 0.231279 CCCTTGTCGTTCGTTCGTTG 59.769 55.000 2.67 0.00 0.00 4.10
924 967 0.382636 CCTTGTCGTTCGTTCGTTGC 60.383 55.000 2.67 0.00 0.00 4.17
994 1037 4.496336 GGGGGTAGCAGCAGCCAG 62.496 72.222 13.07 0.00 43.56 4.85
1205 1260 2.632996 TCCAGACATCGAGAGGTTTGTT 59.367 45.455 7.46 0.00 0.00 2.83
1211 1266 3.071023 ACATCGAGAGGTTTGTTTCTCCA 59.929 43.478 0.00 0.00 37.19 3.86
1223 1278 8.797438 AGGTTTGTTTCTCCAATTCTTTCTATC 58.203 33.333 0.00 0.00 0.00 2.08
1267 1326 3.499918 AGTTTTCAGCTCAGTTGAATCGG 59.500 43.478 4.60 0.00 33.23 4.18
1302 1361 0.886490 GGACTGGGCCGATGCTAATG 60.886 60.000 0.00 0.00 37.74 1.90
1303 1362 1.510480 GACTGGGCCGATGCTAATGC 61.510 60.000 0.00 0.00 37.74 3.56
1307 1366 0.391130 GGGCCGATGCTAATGCGATA 60.391 55.000 0.00 0.00 43.34 2.92
1308 1367 1.438651 GGCCGATGCTAATGCGATAA 58.561 50.000 0.00 0.00 43.34 1.75
1310 1369 3.194861 GGCCGATGCTAATGCGATAATA 58.805 45.455 0.00 0.00 43.34 0.98
1312 1371 3.865745 GCCGATGCTAATGCGATAATACT 59.134 43.478 0.00 0.00 43.34 2.12
1313 1372 5.041287 GCCGATGCTAATGCGATAATACTA 58.959 41.667 0.00 0.00 43.34 1.82
1314 1373 5.518847 GCCGATGCTAATGCGATAATACTAA 59.481 40.000 0.00 0.00 43.34 2.24
1315 1374 6.201044 GCCGATGCTAATGCGATAATACTAAT 59.799 38.462 0.00 0.00 43.34 1.73
1316 1375 7.558991 CCGATGCTAATGCGATAATACTAATG 58.441 38.462 0.00 0.00 43.34 1.90
1317 1376 7.059817 CGATGCTAATGCGATAATACTAATGC 58.940 38.462 0.00 0.00 43.34 3.56
1319 1378 6.096695 TGCTAATGCGATAATACTAATGCGA 58.903 36.000 0.00 0.00 43.34 5.10
1320 1379 6.756542 TGCTAATGCGATAATACTAATGCGAT 59.243 34.615 0.00 0.00 43.34 4.58
1321 1380 7.277760 TGCTAATGCGATAATACTAATGCGATT 59.722 33.333 0.00 0.00 43.34 3.34
1322 1381 7.789759 GCTAATGCGATAATACTAATGCGATTC 59.210 37.037 0.00 0.00 0.00 2.52
1323 1382 7.834068 AATGCGATAATACTAATGCGATTCT 57.166 32.000 0.00 0.00 0.00 2.40
1324 1383 6.871044 TGCGATAATACTAATGCGATTCTC 57.129 37.500 0.00 0.00 0.00 2.87
1328 1420 6.412362 CGATAATACTAATGCGATTCTCCGAG 59.588 42.308 0.00 0.00 0.00 4.63
1501 1593 3.134574 TGGTTTTGCTTGGTCGAGTAT 57.865 42.857 0.00 0.00 0.00 2.12
1525 1617 3.650950 CTGGTGGTGGTGGGGGAG 61.651 72.222 0.00 0.00 0.00 4.30
1583 1677 6.596888 CGATGTATGGGAATATTCTTGCATCT 59.403 38.462 24.05 8.50 30.29 2.90
1592 1686 7.719633 GGGAATATTCTTGCATCTTAACTGGTA 59.280 37.037 14.95 0.00 0.00 3.25
1656 1750 9.292846 GTTTAAATAAACGGGCGATAATTCTTT 57.707 29.630 0.68 0.00 36.58 2.52
1661 1755 4.776795 ACGGGCGATAATTCTTTTTGTT 57.223 36.364 0.00 0.00 0.00 2.83
1679 1773 9.533253 CTTTTTGTTGAATTTGTTCTAGGATGT 57.467 29.630 0.00 0.00 0.00 3.06
1680 1774 9.883142 TTTTTGTTGAATTTGTTCTAGGATGTT 57.117 25.926 0.00 0.00 0.00 2.71
1681 1775 8.870160 TTTGTTGAATTTGTTCTAGGATGTTG 57.130 30.769 0.00 0.00 0.00 3.33
1682 1776 6.446318 TGTTGAATTTGTTCTAGGATGTTGC 58.554 36.000 0.00 0.00 0.00 4.17
1683 1777 6.040278 TGTTGAATTTGTTCTAGGATGTTGCA 59.960 34.615 0.00 0.00 0.00 4.08
1690 1784 2.551270 TCTAGGATGTTGCAAGGAGGT 58.449 47.619 0.00 0.00 0.00 3.85
1731 1828 4.875561 TGTATGCTACAACAGTGTACCA 57.124 40.909 0.00 0.00 39.30 3.25
1741 1838 1.982938 AGTGTACCACTCCCTCCGC 60.983 63.158 0.00 0.00 41.21 5.54
1747 1844 2.182030 CACTCCCTCCGCTCGAAC 59.818 66.667 0.00 0.00 0.00 3.95
1751 1848 0.312416 CTCCCTCCGCTCGAACATAG 59.688 60.000 0.00 0.00 0.00 2.23
1757 1854 0.876342 CCGCTCGAACATAGAAGGCC 60.876 60.000 0.00 0.00 0.00 5.19
1776 1873 6.374417 AGGCCTATAAGTTTTGTCTGAAGA 57.626 37.500 1.29 0.00 0.00 2.87
1778 1875 6.013293 AGGCCTATAAGTTTTGTCTGAAGACT 60.013 38.462 1.29 0.00 44.99 3.24
1779 1876 6.655425 GGCCTATAAGTTTTGTCTGAAGACTT 59.345 38.462 11.55 0.00 44.99 3.01
1780 1877 7.175119 GGCCTATAAGTTTTGTCTGAAGACTTT 59.825 37.037 11.55 2.33 44.99 2.66
1781 1878 8.017946 GCCTATAAGTTTTGTCTGAAGACTTTG 58.982 37.037 11.55 0.00 44.99 2.77
1782 1879 8.507249 CCTATAAGTTTTGTCTGAAGACTTTGG 58.493 37.037 11.55 0.00 44.99 3.28
1783 1880 4.639135 AGTTTTGTCTGAAGACTTTGGC 57.361 40.909 11.55 0.00 44.99 4.52
1784 1881 3.381590 AGTTTTGTCTGAAGACTTTGGCC 59.618 43.478 11.55 0.00 44.99 5.36
1785 1882 1.981256 TTGTCTGAAGACTTTGGCCC 58.019 50.000 11.55 0.00 44.99 5.80
1786 1883 1.140312 TGTCTGAAGACTTTGGCCCT 58.860 50.000 11.55 0.00 44.99 5.19
1787 1884 1.202806 TGTCTGAAGACTTTGGCCCTG 60.203 52.381 11.55 0.00 44.99 4.45
1788 1885 1.140312 TCTGAAGACTTTGGCCCTGT 58.860 50.000 0.00 0.00 0.00 4.00
1789 1886 1.494721 TCTGAAGACTTTGGCCCTGTT 59.505 47.619 0.00 0.00 0.00 3.16
1790 1887 1.882623 CTGAAGACTTTGGCCCTGTTC 59.117 52.381 0.00 0.00 0.00 3.18
1791 1888 0.875059 GAAGACTTTGGCCCTGTTCG 59.125 55.000 0.00 0.00 0.00 3.95
1792 1889 0.537371 AAGACTTTGGCCCTGTTCGG 60.537 55.000 0.00 0.00 0.00 4.30
1800 1897 3.030652 CCCTGTTCGGCAACACAC 58.969 61.111 0.00 0.00 37.61 3.82
1801 1898 2.551912 CCCTGTTCGGCAACACACC 61.552 63.158 0.00 0.00 37.61 4.16
1802 1899 2.551912 CCTGTTCGGCAACACACCC 61.552 63.158 0.00 0.00 37.61 4.61
1803 1900 1.821759 CTGTTCGGCAACACACCCA 60.822 57.895 0.00 0.00 37.61 4.51
1804 1901 2.058829 CTGTTCGGCAACACACCCAC 62.059 60.000 0.00 0.00 37.61 4.61
1805 1902 1.822186 GTTCGGCAACACACCCACT 60.822 57.895 0.00 0.00 32.14 4.00
1806 1903 1.525077 TTCGGCAACACACCCACTC 60.525 57.895 0.00 0.00 0.00 3.51
1807 1904 2.951475 TTCGGCAACACACCCACTCC 62.951 60.000 0.00 0.00 0.00 3.85
1808 1905 2.597510 GGCAACACACCCACTCCC 60.598 66.667 0.00 0.00 0.00 4.30
1809 1906 2.978010 GCAACACACCCACTCCCG 60.978 66.667 0.00 0.00 0.00 5.14
1810 1907 2.281484 CAACACACCCACTCCCGG 60.281 66.667 0.00 0.00 0.00 5.73
1811 1908 2.446994 AACACACCCACTCCCGGA 60.447 61.111 0.73 0.00 0.00 5.14
1812 1909 2.073716 AACACACCCACTCCCGGAA 61.074 57.895 0.73 0.00 0.00 4.30
1813 1910 1.423794 AACACACCCACTCCCGGAAT 61.424 55.000 0.73 0.00 0.00 3.01
1814 1911 1.078426 CACACCCACTCCCGGAATC 60.078 63.158 0.73 0.00 0.00 2.52
1815 1912 1.229529 ACACCCACTCCCGGAATCT 60.230 57.895 0.73 0.00 0.00 2.40
1816 1913 1.221840 CACCCACTCCCGGAATCTG 59.778 63.158 0.73 0.00 0.00 2.90
1817 1914 2.190578 CCCACTCCCGGAATCTGC 59.809 66.667 0.73 0.00 0.00 4.26
1818 1915 2.202932 CCACTCCCGGAATCTGCG 60.203 66.667 0.73 0.00 0.00 5.18
1839 1936 2.747855 CGGGGAAACTGCAGCTCC 60.748 66.667 21.97 21.97 0.00 4.70
1840 1937 2.747855 GGGGAAACTGCAGCTCCG 60.748 66.667 22.76 0.00 0.00 4.63
1841 1938 3.435186 GGGAAACTGCAGCTCCGC 61.435 66.667 22.76 14.93 0.00 5.54
1842 1939 3.435186 GGAAACTGCAGCTCCGCC 61.435 66.667 15.27 4.74 0.00 6.13
1843 1940 3.435186 GAAACTGCAGCTCCGCCC 61.435 66.667 15.27 0.00 0.00 6.13
1865 1962 2.338620 CGAGAGCGGTGTTGTGGA 59.661 61.111 0.00 0.00 0.00 4.02
1866 1963 1.734477 CGAGAGCGGTGTTGTGGAG 60.734 63.158 0.00 0.00 0.00 3.86
1867 1964 2.029844 GAGAGCGGTGTTGTGGAGC 61.030 63.158 0.00 0.00 0.00 4.70
1868 1965 3.414700 GAGCGGTGTTGTGGAGCG 61.415 66.667 0.00 0.00 37.38 5.03
1869 1966 4.988598 AGCGGTGTTGTGGAGCGG 62.989 66.667 0.00 0.00 34.92 5.52
1885 1982 3.564027 GGCGCGATTCCGAACAGG 61.564 66.667 12.10 0.00 42.97 4.00
1886 1983 3.564027 GCGCGATTCCGAACAGGG 61.564 66.667 12.10 0.00 41.52 4.45
1887 1984 3.564027 CGCGATTCCGAACAGGGC 61.564 66.667 0.00 0.00 41.52 5.19
1888 1985 3.564027 GCGATTCCGAACAGGGCG 61.564 66.667 0.00 0.00 41.52 6.13
1929 2026 6.867816 TGACCAAATTTATTCAGCACACATTC 59.132 34.615 0.00 0.00 0.00 2.67
1935 2032 7.686438 ATTTATTCAGCACACATTCACACTA 57.314 32.000 0.00 0.00 0.00 2.74
1947 2044 7.740346 CACACATTCACACTACGTTTTAGATTC 59.260 37.037 0.00 0.00 0.00 2.52
1948 2045 7.439955 ACACATTCACACTACGTTTTAGATTCA 59.560 33.333 0.00 0.00 0.00 2.57
1951 2048 5.534407 TCACACTACGTTTTAGATTCAGCA 58.466 37.500 0.00 0.00 0.00 4.41
1952 2049 5.404366 TCACACTACGTTTTAGATTCAGCAC 59.596 40.000 0.00 0.00 0.00 4.40
1953 2050 5.176774 CACACTACGTTTTAGATTCAGCACA 59.823 40.000 0.00 0.00 0.00 4.57
1954 2051 5.176958 ACACTACGTTTTAGATTCAGCACAC 59.823 40.000 0.00 0.00 0.00 3.82
1955 2052 5.176774 CACTACGTTTTAGATTCAGCACACA 59.823 40.000 0.00 0.00 0.00 3.72
1996 2093 9.709495 AGTCAATTATTTGCAACACATGTTATT 57.291 25.926 0.00 0.00 35.83 1.40
2046 2147 6.598525 TGATACGCCGCATCTTAATATTTTG 58.401 36.000 0.00 0.00 0.00 2.44
2051 2152 5.971202 CGCCGCATCTTAATATTTTGTCTTT 59.029 36.000 0.00 0.00 0.00 2.52
2054 2155 7.257722 CCGCATCTTAATATTTTGTCTTTGGT 58.742 34.615 0.00 0.00 0.00 3.67
2169 2270 0.759346 AGTTGACGAAGCCCTCTTGT 59.241 50.000 0.00 0.00 31.48 3.16
2209 2310 5.182570 TCTGCTGAAAAATTCCTGACATGAG 59.817 40.000 0.00 0.00 0.00 2.90
2253 2354 5.296283 TGGGCATCTTTTTGACAAAATTGTG 59.704 36.000 13.90 12.73 42.43 3.33
2315 2416 3.284617 GAATGGGCGGTGTATTTACCTT 58.715 45.455 0.00 0.00 38.62 3.50
2350 2452 1.317613 CACCTGCCTGTTTGCTGTTA 58.682 50.000 0.00 0.00 0.00 2.41
2352 2454 0.598065 CCTGCCTGTTTGCTGTTACC 59.402 55.000 0.00 0.00 0.00 2.85
2453 2697 1.768870 ACGGTGGGCAAGATATTAGCT 59.231 47.619 0.00 0.00 0.00 3.32
2543 2787 6.324819 CGTTGCTCAAATATTCAAGGTTCAT 58.675 36.000 0.00 0.00 0.00 2.57
2665 2912 7.333423 TGGAAAGACTTATGGACTAACGATTTG 59.667 37.037 0.00 0.00 0.00 2.32
2703 2950 8.915057 AACTACTTGTCTTACAGAGTAGTGTA 57.085 34.615 21.78 0.00 43.60 2.90
2713 2960 9.332502 TCTTACAGAGTAGTGTATTGAGAGATC 57.667 37.037 0.00 0.00 32.92 2.75
2760 3007 2.564553 CTACTGGAGGCGGTGCTGTC 62.565 65.000 0.00 0.00 30.99 3.51
2766 3013 2.434185 GGCGGTGCTGTCATTCGA 60.434 61.111 0.00 0.00 0.00 3.71
2795 3042 4.232188 ACTGGTATCGGACTTACTCTGA 57.768 45.455 0.00 0.00 38.74 3.27
2802 3049 1.944024 CGGACTTACTCTGATCTCGCT 59.056 52.381 0.00 0.00 0.00 4.93
2803 3050 2.286713 CGGACTTACTCTGATCTCGCTG 60.287 54.545 0.00 0.00 0.00 5.18
2804 3051 2.542824 GGACTTACTCTGATCTCGCTGC 60.543 54.545 0.00 0.00 0.00 5.25
2808 3055 0.829333 ACTCTGATCTCGCTGCCATT 59.171 50.000 0.00 0.00 0.00 3.16
3233 3486 3.191162 TGCACTAGTGAAAATGCATGACC 59.809 43.478 27.08 4.30 42.92 4.02
3341 3594 6.272558 AGGGTTTCTCTTGAAGGTATGTTAGT 59.727 38.462 0.00 0.00 33.28 2.24
3361 3614 1.227674 GCCCCTAGCTTCATGGTCG 60.228 63.158 0.00 0.00 38.99 4.79
3376 3629 1.822990 TGGTCGTAGATGGGTCTCAAC 59.177 52.381 0.00 0.00 40.67 3.18
3467 3722 3.128259 GCTTGCAGCTAAAAAGGGC 57.872 52.632 0.00 0.00 38.45 5.19
3534 3789 7.036220 CGAGGTATTGTACTTCTCAAGTCAAT 58.964 38.462 13.63 13.63 41.77 2.57
3540 3795 7.857734 TTGTACTTCTCAAGTCAATTGTTCA 57.142 32.000 5.13 0.00 41.77 3.18
3558 3813 4.916831 TGTTCATGTGCTTCTATTTTTGCG 59.083 37.500 0.00 0.00 0.00 4.85
3561 3816 5.153513 TCATGTGCTTCTATTTTTGCGAAC 58.846 37.500 0.00 0.00 0.00 3.95
3566 3821 6.074409 TGTGCTTCTATTTTTGCGAACAATTG 60.074 34.615 3.24 3.24 35.21 2.32
3621 3876 1.303317 CACCCACCCCCTCGAAAAG 60.303 63.158 0.00 0.00 0.00 2.27
3764 4019 2.285220 CGAACGATGCAATCCTTGTAGG 59.715 50.000 0.00 0.00 41.39 3.18
3775 4030 0.254747 CCTTGTAGGATTTCGGCCCA 59.745 55.000 0.00 0.00 37.67 5.36
3777 4032 2.654863 CTTGTAGGATTTCGGCCCAAT 58.345 47.619 0.00 0.00 0.00 3.16
3874 4136 2.259505 GCTGAAGCATGCTCTGAAAC 57.740 50.000 22.93 9.03 41.59 2.78
3882 4144 7.208777 TGAAGCATGCTCTGAAACAATAAAAA 58.791 30.769 22.93 0.00 0.00 1.94
4080 4342 0.742281 TCAGCAGCTTCTCGCCATTC 60.742 55.000 0.00 0.00 40.39 2.67
4092 4354 1.067142 TCGCCATTCTTCTAACGCACT 60.067 47.619 0.00 0.00 0.00 4.40
4127 4389 8.827677 GCGAAGTATCACTATAGGTTCATTTTT 58.172 33.333 4.43 0.00 0.00 1.94
4142 4404 7.555554 AGGTTCATTTTTAGATGATGACAGGAG 59.444 37.037 0.00 0.00 36.05 3.69
4144 4406 7.854557 TCATTTTTAGATGATGACAGGAGTG 57.145 36.000 0.00 0.00 31.35 3.51
4147 4409 7.672983 TTTTTAGATGATGACAGGAGTGAAC 57.327 36.000 0.00 0.00 0.00 3.18
4167 4429 2.687935 ACAGTTTTGACCATGACCACAC 59.312 45.455 0.00 0.00 0.00 3.82
4186 4449 5.765182 CCACACTCCATATCCAAGAAATACC 59.235 44.000 0.00 0.00 0.00 2.73
4188 4451 5.365605 ACACTCCATATCCAAGAAATACCGA 59.634 40.000 0.00 0.00 0.00 4.69
4189 4452 5.928839 CACTCCATATCCAAGAAATACCGAG 59.071 44.000 0.00 0.00 0.00 4.63
4190 4453 5.602978 ACTCCATATCCAAGAAATACCGAGT 59.397 40.000 0.00 0.00 0.00 4.18
4271 4535 9.243105 TCTGTTTGAAAAGAAAATCCTATAGGG 57.757 33.333 18.97 0.45 35.41 3.53
4347 4611 6.618287 TTTGTGAGATGTACAAAAGAGGTG 57.382 37.500 0.00 0.00 42.97 4.00
4352 4616 5.246203 TGAGATGTACAAAAGAGGTGCTACT 59.754 40.000 0.00 0.00 0.00 2.57
4353 4617 5.482908 AGATGTACAAAAGAGGTGCTACTG 58.517 41.667 0.00 0.00 0.00 2.74
4354 4618 4.682778 TGTACAAAAGAGGTGCTACTGT 57.317 40.909 0.00 0.00 0.00 3.55
4355 4619 4.377021 TGTACAAAAGAGGTGCTACTGTG 58.623 43.478 0.00 0.00 0.00 3.66
4356 4620 3.560636 ACAAAAGAGGTGCTACTGTGT 57.439 42.857 0.00 0.00 0.00 3.72
4357 4621 4.682778 ACAAAAGAGGTGCTACTGTGTA 57.317 40.909 0.00 0.00 0.00 2.90
4358 4622 5.228945 ACAAAAGAGGTGCTACTGTGTAT 57.771 39.130 0.00 0.00 0.00 2.29
4359 4623 6.354794 ACAAAAGAGGTGCTACTGTGTATA 57.645 37.500 0.00 0.00 0.00 1.47
4360 4624 6.164176 ACAAAAGAGGTGCTACTGTGTATAC 58.836 40.000 0.00 0.00 0.00 1.47
4361 4625 6.014499 ACAAAAGAGGTGCTACTGTGTATACT 60.014 38.462 4.17 0.00 0.00 2.12
4362 4626 7.177921 ACAAAAGAGGTGCTACTGTGTATACTA 59.822 37.037 4.17 0.00 0.00 1.82
4363 4627 6.945938 AAGAGGTGCTACTGTGTATACTAG 57.054 41.667 4.17 5.42 0.00 2.57
4364 4628 4.822896 AGAGGTGCTACTGTGTATACTAGC 59.177 45.833 12.62 12.62 33.49 3.42
4365 4629 4.533815 AGGTGCTACTGTGTATACTAGCA 58.466 43.478 16.47 16.47 37.89 3.49
4370 4634 7.761038 TGCTACTGTGTATACTAGCACATAT 57.239 36.000 16.47 3.22 43.52 1.78
4371 4635 7.593825 TGCTACTGTGTATACTAGCACATATG 58.406 38.462 16.47 0.00 43.52 1.78
4381 4645 3.496711 CACATATGCCCGTGCGTT 58.503 55.556 1.58 0.00 41.78 4.84
4382 4646 1.062365 CACATATGCCCGTGCGTTG 59.938 57.895 1.58 0.00 41.78 4.10
4383 4647 2.024588 CATATGCCCGTGCGTTGC 59.975 61.111 0.00 0.00 41.78 4.17
4384 4648 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
4385 4649 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
4386 4650 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
4419 4683 4.345859 TTTTAAGAAGCAACGGGAGAGA 57.654 40.909 0.00 0.00 0.00 3.10
4420 4684 4.553330 TTTAAGAAGCAACGGGAGAGAT 57.447 40.909 0.00 0.00 0.00 2.75
4421 4685 5.670792 TTTAAGAAGCAACGGGAGAGATA 57.329 39.130 0.00 0.00 0.00 1.98
4422 4686 5.670792 TTAAGAAGCAACGGGAGAGATAA 57.329 39.130 0.00 0.00 0.00 1.75
4423 4687 4.762289 AAGAAGCAACGGGAGAGATAAT 57.238 40.909 0.00 0.00 0.00 1.28
4424 4688 4.762289 AGAAGCAACGGGAGAGATAATT 57.238 40.909 0.00 0.00 0.00 1.40
4425 4689 5.871396 AGAAGCAACGGGAGAGATAATTA 57.129 39.130 0.00 0.00 0.00 1.40
4426 4690 6.235231 AGAAGCAACGGGAGAGATAATTAA 57.765 37.500 0.00 0.00 0.00 1.40
4427 4691 6.831976 AGAAGCAACGGGAGAGATAATTAAT 58.168 36.000 0.00 0.00 0.00 1.40
4428 4692 7.283329 AGAAGCAACGGGAGAGATAATTAATT 58.717 34.615 5.89 5.89 0.00 1.40
4429 4693 7.775561 AGAAGCAACGGGAGAGATAATTAATTT 59.224 33.333 5.91 0.00 0.00 1.82
4430 4694 7.264373 AGCAACGGGAGAGATAATTAATTTG 57.736 36.000 5.91 0.00 0.00 2.32
4431 4695 6.828785 AGCAACGGGAGAGATAATTAATTTGT 59.171 34.615 5.91 0.00 0.00 2.83
4432 4696 7.012421 AGCAACGGGAGAGATAATTAATTTGTC 59.988 37.037 5.91 5.69 0.00 3.18
4433 4697 7.639945 CAACGGGAGAGATAATTAATTTGTCC 58.360 38.462 5.91 6.06 32.75 4.02
4434 4698 6.895782 ACGGGAGAGATAATTAATTTGTCCA 58.104 36.000 5.91 0.00 34.64 4.02
4435 4699 6.766467 ACGGGAGAGATAATTAATTTGTCCAC 59.234 38.462 5.91 3.79 34.64 4.02
4436 4700 6.204882 CGGGAGAGATAATTAATTTGTCCACC 59.795 42.308 5.91 8.49 34.64 4.61
4437 4701 7.060421 GGGAGAGATAATTAATTTGTCCACCA 58.940 38.462 5.91 0.00 34.64 4.17
4438 4702 7.559897 GGGAGAGATAATTAATTTGTCCACCAA 59.440 37.037 5.91 0.00 34.64 3.67
4439 4703 8.966868 GGAGAGATAATTAATTTGTCCACCAAA 58.033 33.333 5.91 0.00 46.59 3.28
4443 4707 9.418045 AGATAATTAATTTGTCCACCAAAAACG 57.582 29.630 5.91 0.00 45.72 3.60
4444 4708 6.852858 AATTAATTTGTCCACCAAAAACGG 57.147 33.333 0.00 0.00 45.72 4.44
4445 4709 3.897141 AATTTGTCCACCAAAAACGGT 57.103 38.095 0.00 0.00 45.72 4.83
4446 4710 2.943449 TTTGTCCACCAAAAACGGTC 57.057 45.000 0.00 0.00 40.05 4.79
4447 4711 2.131776 TTGTCCACCAAAAACGGTCT 57.868 45.000 0.00 0.00 37.07 3.85
4448 4712 1.670791 TGTCCACCAAAAACGGTCTC 58.329 50.000 0.00 0.00 37.07 3.36
4449 4713 0.949397 GTCCACCAAAAACGGTCTCC 59.051 55.000 0.00 0.00 37.07 3.71
4459 4723 3.062466 CGGTCTCCGCAGTGAGGA 61.062 66.667 15.39 15.39 41.17 3.71
4464 4728 2.601666 TCCGCAGTGAGGAGCTGT 60.602 61.111 12.09 0.00 36.42 4.40
4465 4729 2.125753 CCGCAGTGAGGAGCTGTC 60.126 66.667 7.18 0.00 36.42 3.51
4466 4730 2.644212 CCGCAGTGAGGAGCTGTCT 61.644 63.158 7.18 0.00 36.42 3.41
4467 4731 1.291588 CGCAGTGAGGAGCTGTCTT 59.708 57.895 0.00 0.00 36.42 3.01
4468 4732 0.735632 CGCAGTGAGGAGCTGTCTTC 60.736 60.000 0.00 0.00 36.42 2.87
4469 4733 0.607620 GCAGTGAGGAGCTGTCTTCT 59.392 55.000 0.00 0.00 36.42 2.85
4470 4734 1.404047 GCAGTGAGGAGCTGTCTTCTC 60.404 57.143 0.00 1.78 43.87 2.87
4471 4735 2.170166 CAGTGAGGAGCTGTCTTCTCT 58.830 52.381 0.00 0.00 43.93 3.10
4472 4736 2.562298 CAGTGAGGAGCTGTCTTCTCTT 59.438 50.000 0.00 0.00 43.93 2.85
4473 4737 3.761218 CAGTGAGGAGCTGTCTTCTCTTA 59.239 47.826 0.00 0.00 43.93 2.10
4474 4738 4.016444 AGTGAGGAGCTGTCTTCTCTTAG 58.984 47.826 0.00 0.00 43.93 2.18
4475 4739 3.130340 GTGAGGAGCTGTCTTCTCTTAGG 59.870 52.174 0.00 0.00 43.93 2.69
4476 4740 2.693074 GAGGAGCTGTCTTCTCTTAGGG 59.307 54.545 0.00 0.00 41.00 3.53
4477 4741 1.138069 GGAGCTGTCTTCTCTTAGGGC 59.862 57.143 0.00 0.00 0.00 5.19
4478 4742 1.827969 GAGCTGTCTTCTCTTAGGGCA 59.172 52.381 0.00 0.00 0.00 5.36
4479 4743 2.433970 GAGCTGTCTTCTCTTAGGGCAT 59.566 50.000 0.00 0.00 0.00 4.40
4480 4744 2.170187 AGCTGTCTTCTCTTAGGGCATG 59.830 50.000 0.00 0.00 0.00 4.06
4481 4745 2.093235 GCTGTCTTCTCTTAGGGCATGT 60.093 50.000 0.00 0.00 0.00 3.21
4482 4746 3.620966 GCTGTCTTCTCTTAGGGCATGTT 60.621 47.826 0.00 0.00 0.00 2.71
4483 4747 4.583871 CTGTCTTCTCTTAGGGCATGTTT 58.416 43.478 0.00 0.00 0.00 2.83
4484 4748 4.326826 TGTCTTCTCTTAGGGCATGTTTG 58.673 43.478 0.00 0.00 0.00 2.93
4485 4749 4.041567 TGTCTTCTCTTAGGGCATGTTTGA 59.958 41.667 0.00 0.00 0.00 2.69
4486 4750 4.393371 GTCTTCTCTTAGGGCATGTTTGAC 59.607 45.833 0.00 0.00 0.00 3.18
4491 4755 4.114997 GGGCATGTTTGACCCGCG 62.115 66.667 0.00 0.00 46.49 6.46
4492 4756 3.053291 GGCATGTTTGACCCGCGA 61.053 61.111 8.23 0.00 0.00 5.87
4493 4757 2.480555 GCATGTTTGACCCGCGAG 59.519 61.111 8.23 0.00 0.00 5.03
4494 4758 2.032634 GCATGTTTGACCCGCGAGA 61.033 57.895 8.23 0.00 0.00 4.04
4495 4759 1.369091 GCATGTTTGACCCGCGAGAT 61.369 55.000 8.23 0.00 0.00 2.75
4496 4760 0.652592 CATGTTTGACCCGCGAGATC 59.347 55.000 8.23 1.92 0.00 2.75
4497 4761 0.537188 ATGTTTGACCCGCGAGATCT 59.463 50.000 8.23 0.00 0.00 2.75
4498 4762 0.320374 TGTTTGACCCGCGAGATCTT 59.680 50.000 8.23 0.00 0.00 2.40
4499 4763 0.721718 GTTTGACCCGCGAGATCTTG 59.278 55.000 8.23 5.50 0.00 3.02
4500 4764 0.606096 TTTGACCCGCGAGATCTTGA 59.394 50.000 14.59 0.00 0.00 3.02
4501 4765 0.824109 TTGACCCGCGAGATCTTGAT 59.176 50.000 14.59 0.00 0.00 2.57
4502 4766 1.687563 TGACCCGCGAGATCTTGATA 58.312 50.000 14.59 0.00 0.00 2.15
4503 4767 1.609072 TGACCCGCGAGATCTTGATAG 59.391 52.381 14.59 4.09 0.00 2.08
4504 4768 1.609555 GACCCGCGAGATCTTGATAGT 59.390 52.381 14.59 6.53 0.00 2.12
4505 4769 1.338337 ACCCGCGAGATCTTGATAGTG 59.662 52.381 14.59 2.48 0.00 2.74
4506 4770 1.336332 CCCGCGAGATCTTGATAGTGG 60.336 57.143 14.59 10.54 0.00 4.00
4507 4771 1.338337 CCGCGAGATCTTGATAGTGGT 59.662 52.381 14.59 0.00 0.00 4.16
4508 4772 2.389059 CGCGAGATCTTGATAGTGGTG 58.611 52.381 14.59 0.00 0.00 4.17
4509 4773 2.748605 GCGAGATCTTGATAGTGGTGG 58.251 52.381 14.59 0.00 0.00 4.61
4510 4774 2.546795 GCGAGATCTTGATAGTGGTGGG 60.547 54.545 14.59 0.00 0.00 4.61
4511 4775 2.036475 CGAGATCTTGATAGTGGTGGGG 59.964 54.545 3.60 0.00 0.00 4.96
4512 4776 3.041946 GAGATCTTGATAGTGGTGGGGT 58.958 50.000 0.00 0.00 0.00 4.95
4513 4777 3.041946 AGATCTTGATAGTGGTGGGGTC 58.958 50.000 0.00 0.00 0.00 4.46
4514 4778 1.191535 TCTTGATAGTGGTGGGGTCG 58.808 55.000 0.00 0.00 0.00 4.79
4515 4779 1.191535 CTTGATAGTGGTGGGGTCGA 58.808 55.000 0.00 0.00 0.00 4.20
4516 4780 1.762957 CTTGATAGTGGTGGGGTCGAT 59.237 52.381 0.00 0.00 0.00 3.59
4517 4781 1.410004 TGATAGTGGTGGGGTCGATC 58.590 55.000 0.00 0.00 0.00 3.69
4518 4782 1.063190 TGATAGTGGTGGGGTCGATCT 60.063 52.381 0.00 0.00 0.00 2.75
4519 4783 1.341531 GATAGTGGTGGGGTCGATCTG 59.658 57.143 0.00 0.00 0.00 2.90
4520 4784 1.327690 TAGTGGTGGGGTCGATCTGC 61.328 60.000 0.00 0.00 0.00 4.26
4521 4785 3.770040 TGGTGGGGTCGATCTGCG 61.770 66.667 0.00 0.00 42.69 5.18
4522 4786 3.771160 GGTGGGGTCGATCTGCGT 61.771 66.667 0.00 0.00 41.80 5.24
4523 4787 2.509336 GTGGGGTCGATCTGCGTG 60.509 66.667 0.00 0.00 41.80 5.34
4524 4788 3.770040 TGGGGTCGATCTGCGTGG 61.770 66.667 0.00 0.00 41.80 4.94
4528 4792 4.796231 GTCGATCTGCGTGGCGGT 62.796 66.667 0.00 0.00 41.80 5.68
4529 4793 4.794439 TCGATCTGCGTGGCGGTG 62.794 66.667 0.00 0.00 41.80 4.94
4530 4794 4.794439 CGATCTGCGTGGCGGTGA 62.794 66.667 0.00 0.00 36.18 4.02
4531 4795 3.188786 GATCTGCGTGGCGGTGAC 61.189 66.667 0.00 0.00 36.18 3.67
4532 4796 4.760047 ATCTGCGTGGCGGTGACC 62.760 66.667 0.00 0.00 36.18 4.02
4544 4808 2.946947 GGTGACCACCCAACTCATG 58.053 57.895 7.95 0.00 45.68 3.07
4545 4809 0.110486 GGTGACCACCCAACTCATGT 59.890 55.000 7.95 0.00 45.68 3.21
4546 4810 1.478654 GGTGACCACCCAACTCATGTT 60.479 52.381 7.95 0.00 45.68 2.71
4547 4811 2.306847 GTGACCACCCAACTCATGTTT 58.693 47.619 0.00 0.00 33.52 2.83
4548 4812 2.693074 GTGACCACCCAACTCATGTTTT 59.307 45.455 0.00 0.00 33.52 2.43
4549 4813 3.132111 GTGACCACCCAACTCATGTTTTT 59.868 43.478 0.00 0.00 33.52 1.94
4550 4814 3.383185 TGACCACCCAACTCATGTTTTTC 59.617 43.478 0.00 0.00 33.52 2.29
4551 4815 2.698274 ACCACCCAACTCATGTTTTTCC 59.302 45.455 0.00 0.00 33.52 3.13
4552 4816 2.965147 CCACCCAACTCATGTTTTTCCT 59.035 45.455 0.00 0.00 33.52 3.36
4553 4817 3.387699 CCACCCAACTCATGTTTTTCCTT 59.612 43.478 0.00 0.00 33.52 3.36
4554 4818 4.501400 CCACCCAACTCATGTTTTTCCTTC 60.501 45.833 0.00 0.00 33.52 3.46
4555 4819 4.099266 CACCCAACTCATGTTTTTCCTTCA 59.901 41.667 0.00 0.00 33.52 3.02
4556 4820 4.342092 ACCCAACTCATGTTTTTCCTTCAG 59.658 41.667 0.00 0.00 33.52 3.02
4557 4821 4.262164 CCCAACTCATGTTTTTCCTTCAGG 60.262 45.833 0.00 0.00 33.52 3.86
4558 4822 4.301628 CAACTCATGTTTTTCCTTCAGGC 58.698 43.478 0.00 0.00 33.52 4.85
4559 4823 2.893489 ACTCATGTTTTTCCTTCAGGCC 59.107 45.455 0.00 0.00 34.44 5.19
4560 4824 2.232208 CTCATGTTTTTCCTTCAGGCCC 59.768 50.000 0.00 0.00 34.44 5.80
4561 4825 1.067635 CATGTTTTTCCTTCAGGCCCG 60.068 52.381 0.00 0.00 34.44 6.13
4562 4826 1.289066 GTTTTTCCTTCAGGCCCGC 59.711 57.895 0.00 0.00 34.44 6.13
4563 4827 1.906333 TTTTTCCTTCAGGCCCGCC 60.906 57.895 0.00 0.00 34.44 6.13
4565 4829 2.764637 TTTTCCTTCAGGCCCGCCTC 62.765 60.000 4.92 0.00 46.28 4.70
4566 4830 4.722535 TCCTTCAGGCCCGCCTCT 62.723 66.667 4.92 0.00 46.28 3.69
4567 4831 4.479993 CCTTCAGGCCCGCCTCTG 62.480 72.222 4.92 0.00 46.28 3.35
4568 4832 3.710722 CTTCAGGCCCGCCTCTGT 61.711 66.667 4.92 0.00 46.28 3.41
4569 4833 3.672295 CTTCAGGCCCGCCTCTGTC 62.672 68.421 4.92 0.00 46.28 3.51
4570 4834 4.704103 TCAGGCCCGCCTCTGTCT 62.704 66.667 4.92 0.00 46.28 3.41
4571 4835 4.154347 CAGGCCCGCCTCTGTCTC 62.154 72.222 4.92 0.00 46.28 3.36
4577 4841 3.382832 CGCCTCTGTCTCGGGGTT 61.383 66.667 0.00 0.00 0.00 4.11
4578 4842 2.266055 GCCTCTGTCTCGGGGTTG 59.734 66.667 0.00 0.00 0.00 3.77
4579 4843 2.584391 GCCTCTGTCTCGGGGTTGT 61.584 63.158 0.00 0.00 0.00 3.32
4580 4844 1.293498 CCTCTGTCTCGGGGTTGTG 59.707 63.158 0.00 0.00 0.00 3.33
4581 4845 1.293498 CTCTGTCTCGGGGTTGTGG 59.707 63.158 0.00 0.00 0.00 4.17
4582 4846 2.358737 CTGTCTCGGGGTTGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
4583 4847 2.847234 TGTCTCGGGGTTGTGGCT 60.847 61.111 0.00 0.00 0.00 4.75
4584 4848 2.358737 GTCTCGGGGTTGTGGCTG 60.359 66.667 0.00 0.00 0.00 4.85
4585 4849 4.329545 TCTCGGGGTTGTGGCTGC 62.330 66.667 0.00 0.00 0.00 5.25
4590 4854 3.971702 GGGTTGTGGCTGCCTCCT 61.972 66.667 21.03 0.00 0.00 3.69
4591 4855 2.360475 GGTTGTGGCTGCCTCCTC 60.360 66.667 21.03 11.28 0.00 3.71
4592 4856 2.431683 GTTGTGGCTGCCTCCTCA 59.568 61.111 21.03 10.77 0.00 3.86
4593 4857 1.001641 GTTGTGGCTGCCTCCTCAT 60.002 57.895 21.03 0.00 30.69 2.90
4594 4858 0.610232 GTTGTGGCTGCCTCCTCATT 60.610 55.000 21.03 0.00 30.69 2.57
4595 4859 0.112995 TTGTGGCTGCCTCCTCATTT 59.887 50.000 21.03 0.00 30.69 2.32
4596 4860 0.609957 TGTGGCTGCCTCCTCATTTG 60.610 55.000 21.03 0.00 0.00 2.32
4597 4861 1.000521 TGGCTGCCTCCTCATTTGG 60.001 57.895 21.03 0.00 0.00 3.28
4598 4862 1.000396 GGCTGCCTCCTCATTTGGT 60.000 57.895 12.43 0.00 0.00 3.67
4599 4863 1.318158 GGCTGCCTCCTCATTTGGTG 61.318 60.000 12.43 0.00 0.00 4.17
4600 4864 1.318158 GCTGCCTCCTCATTTGGTGG 61.318 60.000 0.00 0.00 42.10 4.61
4604 4868 2.044123 CCTCCTCATTTGGTGGCTAC 57.956 55.000 0.00 0.00 34.50 3.58
4606 4870 0.623723 TCCTCATTTGGTGGCTACCC 59.376 55.000 17.66 0.00 46.96 3.69
4607 4871 0.625849 CCTCATTTGGTGGCTACCCT 59.374 55.000 17.66 0.00 46.96 4.34
4608 4872 1.683011 CCTCATTTGGTGGCTACCCTG 60.683 57.143 17.66 11.53 46.96 4.45
4609 4873 0.323360 TCATTTGGTGGCTACCCTGC 60.323 55.000 17.66 0.00 46.96 4.85
4610 4874 1.378514 ATTTGGTGGCTACCCTGCG 60.379 57.895 17.66 0.00 46.96 5.18
4611 4875 2.837031 ATTTGGTGGCTACCCTGCGG 62.837 60.000 17.66 0.00 46.96 5.69
4616 4880 4.410400 GGCTACCCTGCGGCTGTT 62.410 66.667 0.00 0.00 0.00 3.16
4617 4881 3.127533 GCTACCCTGCGGCTGTTG 61.128 66.667 0.00 0.00 0.00 3.33
4618 4882 2.436646 CTACCCTGCGGCTGTTGG 60.437 66.667 0.00 0.98 0.00 3.77
4619 4883 3.976701 CTACCCTGCGGCTGTTGGG 62.977 68.421 19.24 19.24 44.89 4.12
4628 4892 3.977244 GCTGTTGGGGCACGGTTG 61.977 66.667 0.00 0.00 0.00 3.77
4629 4893 2.518349 CTGTTGGGGCACGGTTGT 60.518 61.111 0.00 0.00 0.00 3.32
4630 4894 2.043852 TGTTGGGGCACGGTTGTT 60.044 55.556 0.00 0.00 0.00 2.83
4631 4895 1.671901 CTGTTGGGGCACGGTTGTTT 61.672 55.000 0.00 0.00 0.00 2.83
4632 4896 1.066752 GTTGGGGCACGGTTGTTTC 59.933 57.895 0.00 0.00 0.00 2.78
4633 4897 2.128507 TTGGGGCACGGTTGTTTCC 61.129 57.895 0.00 0.00 0.00 3.13
4634 4898 2.519780 GGGGCACGGTTGTTTCCA 60.520 61.111 0.00 0.00 0.00 3.53
4635 4899 2.725641 GGGCACGGTTGTTTCCAC 59.274 61.111 0.00 0.00 0.00 4.02
4636 4900 2.725641 GGCACGGTTGTTTCCACC 59.274 61.111 0.00 0.00 0.00 4.61
4637 4901 2.122167 GGCACGGTTGTTTCCACCA 61.122 57.895 0.00 0.00 0.00 4.17
4638 4902 1.065109 GCACGGTTGTTTCCACCAC 59.935 57.895 0.00 0.00 0.00 4.16
4639 4903 1.381165 GCACGGTTGTTTCCACCACT 61.381 55.000 0.00 0.00 0.00 4.00
4640 4904 0.661020 CACGGTTGTTTCCACCACTC 59.339 55.000 0.00 0.00 0.00 3.51
4641 4905 0.544697 ACGGTTGTTTCCACCACTCT 59.455 50.000 0.00 0.00 0.00 3.24
4642 4906 1.064979 ACGGTTGTTTCCACCACTCTT 60.065 47.619 0.00 0.00 0.00 2.85
4643 4907 2.021457 CGGTTGTTTCCACCACTCTTT 58.979 47.619 0.00 0.00 0.00 2.52
4644 4908 2.032924 CGGTTGTTTCCACCACTCTTTC 59.967 50.000 0.00 0.00 0.00 2.62
4645 4909 3.288092 GGTTGTTTCCACCACTCTTTCT 58.712 45.455 0.00 0.00 0.00 2.52
4646 4910 3.699538 GGTTGTTTCCACCACTCTTTCTT 59.300 43.478 0.00 0.00 0.00 2.52
4647 4911 4.885325 GGTTGTTTCCACCACTCTTTCTTA 59.115 41.667 0.00 0.00 0.00 2.10
4648 4912 5.220989 GGTTGTTTCCACCACTCTTTCTTAC 60.221 44.000 0.00 0.00 0.00 2.34
4649 4913 4.124238 TGTTTCCACCACTCTTTCTTACG 58.876 43.478 0.00 0.00 0.00 3.18
4650 4914 4.141892 TGTTTCCACCACTCTTTCTTACGA 60.142 41.667 0.00 0.00 0.00 3.43
4651 4915 3.655276 TCCACCACTCTTTCTTACGAC 57.345 47.619 0.00 0.00 0.00 4.34
4652 4916 2.030540 TCCACCACTCTTTCTTACGACG 60.031 50.000 0.00 0.00 0.00 5.12
4653 4917 2.288030 CCACCACTCTTTCTTACGACGT 60.288 50.000 5.52 5.52 0.00 4.34
4654 4918 2.724690 CACCACTCTTTCTTACGACGTG 59.275 50.000 11.56 0.00 0.00 4.49
4655 4919 1.719780 CCACTCTTTCTTACGACGTGC 59.280 52.381 11.56 0.00 0.00 5.34
4656 4920 2.390938 CACTCTTTCTTACGACGTGCA 58.609 47.619 11.56 0.00 0.00 4.57
4657 4921 2.792674 CACTCTTTCTTACGACGTGCAA 59.207 45.455 11.56 0.00 0.00 4.08
4658 4922 2.793232 ACTCTTTCTTACGACGTGCAAC 59.207 45.455 11.56 0.00 0.00 4.17
4659 4923 2.129607 TCTTTCTTACGACGTGCAACC 58.870 47.619 11.56 0.00 0.00 3.77
4660 4924 1.862201 CTTTCTTACGACGTGCAACCA 59.138 47.619 11.56 0.00 0.00 3.67
4661 4925 1.493772 TTCTTACGACGTGCAACCAG 58.506 50.000 11.56 0.00 0.00 4.00
4662 4926 0.669619 TCTTACGACGTGCAACCAGA 59.330 50.000 11.56 0.00 0.00 3.86
4663 4927 1.271379 TCTTACGACGTGCAACCAGAT 59.729 47.619 11.56 0.00 0.00 2.90
4664 4928 1.390123 CTTACGACGTGCAACCAGATG 59.610 52.381 11.56 0.00 0.00 2.90
4665 4929 0.389296 TACGACGTGCAACCAGATGG 60.389 55.000 11.56 0.00 42.17 3.51
4666 4930 1.374125 CGACGTGCAACCAGATGGA 60.374 57.895 5.72 0.00 38.94 3.41
4667 4931 0.740868 CGACGTGCAACCAGATGGAT 60.741 55.000 5.72 0.00 38.94 3.41
4668 4932 1.453155 GACGTGCAACCAGATGGATT 58.547 50.000 5.72 0.00 38.94 3.01
4669 4933 2.627945 GACGTGCAACCAGATGGATTA 58.372 47.619 5.72 0.00 38.94 1.75
4670 4934 2.351726 GACGTGCAACCAGATGGATTAC 59.648 50.000 5.72 0.00 38.94 1.89
4671 4935 2.027192 ACGTGCAACCAGATGGATTACT 60.027 45.455 5.72 0.00 38.94 2.24
4672 4936 3.196901 ACGTGCAACCAGATGGATTACTA 59.803 43.478 5.72 0.00 38.94 1.82
4673 4937 4.188462 CGTGCAACCAGATGGATTACTAA 58.812 43.478 5.72 0.00 38.94 2.24
4674 4938 4.816385 CGTGCAACCAGATGGATTACTAAT 59.184 41.667 5.72 0.00 38.94 1.73
4675 4939 5.989168 CGTGCAACCAGATGGATTACTAATA 59.011 40.000 5.72 0.00 38.94 0.98
4676 4940 6.146184 CGTGCAACCAGATGGATTACTAATAG 59.854 42.308 5.72 0.00 38.94 1.73
4677 4941 5.997746 TGCAACCAGATGGATTACTAATAGC 59.002 40.000 5.72 0.00 38.94 2.97
4678 4942 5.997746 GCAACCAGATGGATTACTAATAGCA 59.002 40.000 5.72 0.00 38.94 3.49
4679 4943 6.148480 GCAACCAGATGGATTACTAATAGCAG 59.852 42.308 5.72 0.00 38.94 4.24
4680 4944 5.799213 ACCAGATGGATTACTAATAGCAGC 58.201 41.667 5.72 0.00 38.94 5.25
4681 4945 4.867047 CCAGATGGATTACTAATAGCAGCG 59.133 45.833 0.00 0.00 37.39 5.18
4682 4946 4.328440 CAGATGGATTACTAATAGCAGCGC 59.672 45.833 0.00 0.00 0.00 5.92
4683 4947 3.744238 TGGATTACTAATAGCAGCGCA 57.256 42.857 11.47 0.00 0.00 6.09
4684 4948 3.390135 TGGATTACTAATAGCAGCGCAC 58.610 45.455 11.47 0.00 0.00 5.34
4685 4949 3.181470 TGGATTACTAATAGCAGCGCACA 60.181 43.478 11.47 0.00 0.00 4.57
4686 4950 3.184581 GGATTACTAATAGCAGCGCACAC 59.815 47.826 11.47 0.00 0.00 3.82
4687 4951 2.951457 TACTAATAGCAGCGCACACA 57.049 45.000 11.47 0.00 0.00 3.72
4688 4952 2.315925 ACTAATAGCAGCGCACACAT 57.684 45.000 11.47 0.00 0.00 3.21
4689 4953 2.205074 ACTAATAGCAGCGCACACATC 58.795 47.619 11.47 0.00 0.00 3.06
4690 4954 1.528586 CTAATAGCAGCGCACACATCC 59.471 52.381 11.47 0.00 0.00 3.51
4691 4955 1.097547 AATAGCAGCGCACACATCCC 61.098 55.000 11.47 0.00 0.00 3.85
4694 4958 3.049674 CAGCGCACACATCCCGTT 61.050 61.111 11.47 0.00 0.00 4.44
4695 4959 2.281484 AGCGCACACATCCCGTTT 60.281 55.556 11.47 0.00 0.00 3.60
4696 4960 2.175811 GCGCACACATCCCGTTTC 59.824 61.111 0.30 0.00 0.00 2.78
4697 4961 2.612567 GCGCACACATCCCGTTTCA 61.613 57.895 0.30 0.00 0.00 2.69
4698 4962 1.922135 GCGCACACATCCCGTTTCAT 61.922 55.000 0.30 0.00 0.00 2.57
4699 4963 0.521291 CGCACACATCCCGTTTCATT 59.479 50.000 0.00 0.00 0.00 2.57
4700 4964 1.735018 CGCACACATCCCGTTTCATTA 59.265 47.619 0.00 0.00 0.00 1.90
4701 4965 2.223021 CGCACACATCCCGTTTCATTAG 60.223 50.000 0.00 0.00 0.00 1.73
4702 4966 2.477863 GCACACATCCCGTTTCATTAGC 60.478 50.000 0.00 0.00 0.00 3.09
4703 4967 2.746904 CACACATCCCGTTTCATTAGCA 59.253 45.455 0.00 0.00 0.00 3.49
4704 4968 3.378112 CACACATCCCGTTTCATTAGCAT 59.622 43.478 0.00 0.00 0.00 3.79
4705 4969 4.574421 CACACATCCCGTTTCATTAGCATA 59.426 41.667 0.00 0.00 0.00 3.14
4706 4970 5.065859 CACACATCCCGTTTCATTAGCATAA 59.934 40.000 0.00 0.00 0.00 1.90
4707 4971 5.827797 ACACATCCCGTTTCATTAGCATAAT 59.172 36.000 0.00 0.00 0.00 1.28
4708 4972 6.017109 ACACATCCCGTTTCATTAGCATAATC 60.017 38.462 0.00 0.00 0.00 1.75
4709 4973 6.017192 CACATCCCGTTTCATTAGCATAATCA 60.017 38.462 0.00 0.00 0.00 2.57
4710 4974 6.205464 ACATCCCGTTTCATTAGCATAATCAG 59.795 38.462 0.00 0.00 0.00 2.90
4711 4975 5.680619 TCCCGTTTCATTAGCATAATCAGT 58.319 37.500 0.00 0.00 0.00 3.41
4712 4976 5.527214 TCCCGTTTCATTAGCATAATCAGTG 59.473 40.000 0.00 0.00 0.00 3.66
4713 4977 5.207768 CCGTTTCATTAGCATAATCAGTGC 58.792 41.667 0.00 0.00 42.81 4.40
4714 4978 5.220835 CCGTTTCATTAGCATAATCAGTGCA 60.221 40.000 0.69 0.00 44.87 4.57
4715 4979 6.432936 CGTTTCATTAGCATAATCAGTGCAT 58.567 36.000 0.00 0.00 44.87 3.96
4716 4980 7.307930 CCGTTTCATTAGCATAATCAGTGCATA 60.308 37.037 0.00 0.00 44.87 3.14
4717 4981 8.069574 CGTTTCATTAGCATAATCAGTGCATAA 58.930 33.333 0.00 0.00 44.87 1.90
4718 4982 9.173939 GTTTCATTAGCATAATCAGTGCATAAC 57.826 33.333 0.00 0.00 44.87 1.89
4719 4983 7.439157 TCATTAGCATAATCAGTGCATAACC 57.561 36.000 0.00 0.00 44.87 2.85
4720 4984 6.997476 TCATTAGCATAATCAGTGCATAACCA 59.003 34.615 0.00 0.00 44.87 3.67
4721 4985 6.866010 TTAGCATAATCAGTGCATAACCAG 57.134 37.500 0.00 0.00 44.87 4.00
4722 4986 5.039920 AGCATAATCAGTGCATAACCAGA 57.960 39.130 0.00 0.00 44.87 3.86
4723 4987 5.628130 AGCATAATCAGTGCATAACCAGAT 58.372 37.500 0.00 0.00 44.87 2.90
4724 4988 6.772605 AGCATAATCAGTGCATAACCAGATA 58.227 36.000 0.00 0.00 44.87 1.98
4725 4989 7.400439 AGCATAATCAGTGCATAACCAGATAT 58.600 34.615 0.00 0.00 44.87 1.63
4726 4990 7.336176 AGCATAATCAGTGCATAACCAGATATG 59.664 37.037 0.00 0.00 44.87 1.78
4727 4991 7.414873 GCATAATCAGTGCATAACCAGATATGG 60.415 40.741 4.39 4.39 42.08 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.807948 ATGAGCATGTACCTTTGTTTAGTAAT 57.192 30.769 0.00 0.00 0.00 1.89
2 3 8.537016 AGTATGAGCATGTACCTTTGTTTAGTA 58.463 33.333 0.00 0.00 0.00 1.82
14 15 5.533482 CCAAGACCTAGTATGAGCATGTAC 58.467 45.833 0.00 0.00 0.00 2.90
15 16 4.039245 GCCAAGACCTAGTATGAGCATGTA 59.961 45.833 0.00 0.00 0.00 2.29
34 35 0.905809 TACGGCTACTCTTGGGCCAA 60.906 55.000 19.68 19.68 45.50 4.52
84 85 1.399440 CCGATGTGTGAAAGCATCCAG 59.601 52.381 0.00 0.00 38.50 3.86
101 102 0.107214 GAAACCCATGCCAGATCCGA 60.107 55.000 0.00 0.00 0.00 4.55
103 104 1.106285 GTGAAACCCATGCCAGATCC 58.894 55.000 0.00 0.00 0.00 3.36
130 131 5.930569 GGTACCATTCTACCGTGGAAATATC 59.069 44.000 7.15 0.00 38.86 1.63
135 136 2.823959 AGGTACCATTCTACCGTGGAA 58.176 47.619 15.94 0.00 41.18 3.53
236 237 8.593679 TGTCCTCAAATACTTGTCAGAGAAATA 58.406 33.333 0.00 0.00 33.94 1.40
242 243 6.401394 CATCTGTCCTCAAATACTTGTCAGA 58.599 40.000 0.00 0.00 34.87 3.27
243 244 5.583854 CCATCTGTCCTCAAATACTTGTCAG 59.416 44.000 0.00 0.00 33.94 3.51
256 257 4.479158 AGAATCCTACTCCATCTGTCCTC 58.521 47.826 0.00 0.00 0.00 3.71
257 258 4.551215 AGAATCCTACTCCATCTGTCCT 57.449 45.455 0.00 0.00 0.00 3.85
258 259 5.622346 AAAGAATCCTACTCCATCTGTCC 57.378 43.478 0.00 0.00 0.00 4.02
259 260 5.295540 GCAAAAGAATCCTACTCCATCTGTC 59.704 44.000 0.00 0.00 0.00 3.51
474 478 8.567948 ACTTCATATGTTTGACCAACTTTACAG 58.432 33.333 1.90 0.00 36.21 2.74
541 547 7.348080 AGAGATAATGTTCTGTATTCGGTCA 57.652 36.000 0.00 0.00 0.00 4.02
558 564 5.492855 TCCAAAGGGAAACGAAGAGATAA 57.507 39.130 0.00 0.00 41.32 1.75
634 640 9.929180 GTTTTTAGGATCAAATAAAGGAGCTTT 57.071 29.630 0.00 0.00 37.46 3.51
638 644 9.639601 GGTTGTTTTTAGGATCAAATAAAGGAG 57.360 33.333 0.00 0.00 0.00 3.69
660 666 0.877071 GATGGGCATATCGCTGGTTG 59.123 55.000 0.00 0.00 41.91 3.77
689 695 2.935042 TCCACGTTTTTGTTGTGTGTG 58.065 42.857 0.00 0.00 31.75 3.82
718 724 1.021390 AGCAAGATCCTGGAAACGCG 61.021 55.000 3.53 3.53 0.00 6.01
844 871 2.637589 GCCTTAAATAGCGCCGCC 59.362 61.111 4.98 0.00 0.00 6.13
854 881 4.763646 CGCGGTCCCGGCCTTAAA 62.764 66.667 7.97 0.00 40.19 1.52
992 1035 3.136123 CCGCCTCCATTGGTGCTG 61.136 66.667 14.84 7.41 36.35 4.41
1205 1260 5.043903 CGAGCGATAGAAAGAATTGGAGAA 58.956 41.667 0.00 0.00 39.76 2.87
1211 1266 3.179443 TGCCGAGCGATAGAAAGAATT 57.821 42.857 0.00 0.00 39.76 2.17
1223 1278 7.908193 ACTAATTAATTAAAAATGCCGAGCG 57.092 32.000 9.15 0.00 0.00 5.03
1256 1315 1.714794 AAGTCTCGCCGATTCAACTG 58.285 50.000 0.00 0.00 0.00 3.16
1262 1321 1.078426 CCCCAAAGTCTCGCCGATT 60.078 57.895 0.00 0.00 0.00 3.34
1267 1326 2.434359 CCGTCCCCAAAGTCTCGC 60.434 66.667 0.00 0.00 0.00 5.03
1302 1361 5.052304 CGGAGAATCGCATTAGTATTATCGC 60.052 44.000 0.00 0.00 34.37 4.58
1303 1362 6.255950 TCGGAGAATCGCATTAGTATTATCG 58.744 40.000 0.00 0.00 34.37 2.92
1307 1366 5.455056 ACTCGGAGAATCGCATTAGTATT 57.545 39.130 12.86 0.00 34.09 1.89
1308 1367 5.455056 AACTCGGAGAATCGCATTAGTAT 57.545 39.130 12.86 0.00 34.09 2.12
1310 1369 3.707793 GAACTCGGAGAATCGCATTAGT 58.292 45.455 12.86 0.00 34.09 2.24
1312 1371 2.098607 ACGAACTCGGAGAATCGCATTA 59.901 45.455 25.90 0.00 45.72 1.90
1313 1372 1.135083 ACGAACTCGGAGAATCGCATT 60.135 47.619 25.90 12.61 45.72 3.56
1314 1373 0.456221 ACGAACTCGGAGAATCGCAT 59.544 50.000 25.90 13.11 45.72 4.73
1315 1374 1.089112 TACGAACTCGGAGAATCGCA 58.911 50.000 25.90 17.07 45.72 5.10
1316 1375 2.044860 CATACGAACTCGGAGAATCGC 58.955 52.381 25.90 7.29 45.72 4.58
1317 1376 3.604065 TCATACGAACTCGGAGAATCG 57.396 47.619 25.01 25.01 46.71 3.34
1319 1378 3.491104 GCCTTCATACGAACTCGGAGAAT 60.491 47.826 12.86 0.00 44.95 2.40
1320 1379 2.159282 GCCTTCATACGAACTCGGAGAA 60.159 50.000 12.86 4.01 44.95 2.87
1321 1380 1.404391 GCCTTCATACGAACTCGGAGA 59.596 52.381 12.86 0.00 44.95 3.71
1322 1381 1.405821 AGCCTTCATACGAACTCGGAG 59.594 52.381 2.83 2.83 44.95 4.63
1323 1382 1.134367 CAGCCTTCATACGAACTCGGA 59.866 52.381 3.88 0.00 44.95 4.55
1324 1383 1.134367 TCAGCCTTCATACGAACTCGG 59.866 52.381 3.88 0.00 44.95 4.63
1328 1420 2.280628 CCCTTCAGCCTTCATACGAAC 58.719 52.381 0.00 0.00 0.00 3.95
1501 1593 0.181587 CCACCACCACCAGTAACACA 59.818 55.000 0.00 0.00 0.00 3.72
1525 1617 4.837972 AGAGAATAGTTGCTTTCTGTCCC 58.162 43.478 0.00 0.00 32.46 4.46
1583 1677 9.059260 GGACACAAGTTAAATTCTACCAGTTAA 57.941 33.333 0.00 0.00 0.00 2.01
1592 1686 8.652290 ACTCTTCTAGGACACAAGTTAAATTCT 58.348 33.333 0.00 0.00 0.00 2.40
1638 1732 5.128992 ACAAAAAGAATTATCGCCCGTTT 57.871 34.783 0.00 0.00 0.00 3.60
1643 1737 8.495148 ACAAATTCAACAAAAAGAATTATCGCC 58.505 29.630 0.00 0.00 42.02 5.54
1656 1750 7.437862 GCAACATCCTAGAACAAATTCAACAAA 59.562 33.333 0.00 0.00 37.29 2.83
1661 1755 6.294675 CCTTGCAACATCCTAGAACAAATTCA 60.295 38.462 0.00 0.00 37.29 2.57
1679 1773 4.157246 TCACTTCTACTACCTCCTTGCAA 58.843 43.478 0.00 0.00 0.00 4.08
1680 1774 3.774734 TCACTTCTACTACCTCCTTGCA 58.225 45.455 0.00 0.00 0.00 4.08
1681 1775 4.803098 TTCACTTCTACTACCTCCTTGC 57.197 45.455 0.00 0.00 0.00 4.01
1682 1776 7.162082 ACAATTTCACTTCTACTACCTCCTTG 58.838 38.462 0.00 0.00 0.00 3.61
1683 1777 7.235812 AGACAATTTCACTTCTACTACCTCCTT 59.764 37.037 0.00 0.00 0.00 3.36
1690 1784 9.151471 GCATACAAGACAATTTCACTTCTACTA 57.849 33.333 0.00 0.00 0.00 1.82
1731 1828 0.395311 TATGTTCGAGCGGAGGGAGT 60.395 55.000 0.00 0.00 0.00 3.85
1741 1838 6.334102 ACTTATAGGCCTTCTATGTTCGAG 57.666 41.667 12.58 0.00 38.96 4.04
1747 1844 7.987458 TCAGACAAAACTTATAGGCCTTCTATG 59.013 37.037 12.58 8.39 38.96 2.23
1751 1848 6.879458 TCTTCAGACAAAACTTATAGGCCTTC 59.121 38.462 12.58 0.00 0.00 3.46
1783 1880 2.551912 GGTGTGTTGCCGAACAGGG 61.552 63.158 0.00 0.00 42.87 4.45
1784 1881 2.551912 GGGTGTGTTGCCGAACAGG 61.552 63.158 0.00 0.00 42.87 4.00
1785 1882 1.821759 TGGGTGTGTTGCCGAACAG 60.822 57.895 0.00 0.00 42.87 3.16
1786 1883 2.115911 GTGGGTGTGTTGCCGAACA 61.116 57.895 0.00 0.00 39.88 3.18
1787 1884 1.782028 GAGTGGGTGTGTTGCCGAAC 61.782 60.000 0.00 0.00 0.00 3.95
1788 1885 1.525077 GAGTGGGTGTGTTGCCGAA 60.525 57.895 0.00 0.00 0.00 4.30
1789 1886 2.110213 GAGTGGGTGTGTTGCCGA 59.890 61.111 0.00 0.00 0.00 5.54
1790 1887 2.978010 GGAGTGGGTGTGTTGCCG 60.978 66.667 0.00 0.00 0.00 5.69
1791 1888 2.597510 GGGAGTGGGTGTGTTGCC 60.598 66.667 0.00 0.00 0.00 4.52
1792 1889 2.978010 CGGGAGTGGGTGTGTTGC 60.978 66.667 0.00 0.00 0.00 4.17
1793 1890 2.281484 CCGGGAGTGGGTGTGTTG 60.281 66.667 0.00 0.00 0.00 3.33
1794 1891 1.423794 ATTCCGGGAGTGGGTGTGTT 61.424 55.000 0.00 0.00 0.00 3.32
1795 1892 1.838073 GATTCCGGGAGTGGGTGTGT 61.838 60.000 0.00 0.00 0.00 3.72
1796 1893 1.078426 GATTCCGGGAGTGGGTGTG 60.078 63.158 0.00 0.00 0.00 3.82
1797 1894 1.229529 AGATTCCGGGAGTGGGTGT 60.230 57.895 0.00 0.00 0.00 4.16
1798 1895 1.221840 CAGATTCCGGGAGTGGGTG 59.778 63.158 0.00 0.00 0.00 4.61
1799 1896 2.670148 GCAGATTCCGGGAGTGGGT 61.670 63.158 0.00 0.00 0.00 4.51
1800 1897 2.190578 GCAGATTCCGGGAGTGGG 59.809 66.667 0.00 0.00 0.00 4.61
1801 1898 2.202932 CGCAGATTCCGGGAGTGG 60.203 66.667 0.00 0.00 0.00 4.00
1802 1899 2.202932 CCGCAGATTCCGGGAGTG 60.203 66.667 0.00 0.00 41.99 3.51
1803 1900 2.363795 TCCGCAGATTCCGGGAGT 60.364 61.111 0.00 0.00 45.60 3.85
1804 1901 2.419198 CTCCGCAGATTCCGGGAG 59.581 66.667 0.00 0.00 45.60 4.30
1805 1902 3.849951 GCTCCGCAGATTCCGGGA 61.850 66.667 0.00 0.00 45.60 5.14
1809 1906 4.918201 CCCCGCTCCGCAGATTCC 62.918 72.222 0.00 0.00 0.00 3.01
1810 1907 2.869503 TTTCCCCGCTCCGCAGATTC 62.870 60.000 0.00 0.00 0.00 2.52
1811 1908 2.966732 TTTCCCCGCTCCGCAGATT 61.967 57.895 0.00 0.00 0.00 2.40
1812 1909 3.399181 TTTCCCCGCTCCGCAGAT 61.399 61.111 0.00 0.00 0.00 2.90
1813 1910 4.388499 GTTTCCCCGCTCCGCAGA 62.388 66.667 0.00 0.00 0.00 4.26
1814 1911 4.394712 AGTTTCCCCGCTCCGCAG 62.395 66.667 0.00 0.00 0.00 5.18
1815 1912 4.697756 CAGTTTCCCCGCTCCGCA 62.698 66.667 0.00 0.00 0.00 5.69
1817 1914 4.697756 TGCAGTTTCCCCGCTCCG 62.698 66.667 0.00 0.00 0.00 4.63
1818 1915 2.747855 CTGCAGTTTCCCCGCTCC 60.748 66.667 5.25 0.00 0.00 4.70
1819 1916 3.435186 GCTGCAGTTTCCCCGCTC 61.435 66.667 16.64 0.00 0.00 5.03
1820 1917 3.909086 GAGCTGCAGTTTCCCCGCT 62.909 63.158 16.64 3.74 0.00 5.52
1821 1918 3.435186 GAGCTGCAGTTTCCCCGC 61.435 66.667 16.64 0.00 0.00 6.13
1822 1919 2.747855 GGAGCTGCAGTTTCCCCG 60.748 66.667 21.91 0.00 0.00 5.73
1823 1920 2.747855 CGGAGCTGCAGTTTCCCC 60.748 66.667 24.65 13.31 0.00 4.81
1848 1945 1.734477 CTCCACAACACCGCTCTCG 60.734 63.158 0.00 0.00 0.00 4.04
1849 1946 2.029844 GCTCCACAACACCGCTCTC 61.030 63.158 0.00 0.00 0.00 3.20
1850 1947 2.031163 GCTCCACAACACCGCTCT 59.969 61.111 0.00 0.00 0.00 4.09
1851 1948 3.414700 CGCTCCACAACACCGCTC 61.415 66.667 0.00 0.00 0.00 5.03
1852 1949 4.988598 CCGCTCCACAACACCGCT 62.989 66.667 0.00 0.00 0.00 5.52
1868 1965 3.564027 CCTGTTCGGAATCGCGCC 61.564 66.667 0.00 0.00 36.13 6.53
1869 1966 3.564027 CCCTGTTCGGAATCGCGC 61.564 66.667 0.00 0.00 36.13 6.86
1870 1967 3.564027 GCCCTGTTCGGAATCGCG 61.564 66.667 0.00 0.00 36.13 5.87
1871 1968 3.564027 CGCCCTGTTCGGAATCGC 61.564 66.667 0.00 0.00 36.13 4.58
1872 1969 1.017177 TTTCGCCCTGTTCGGAATCG 61.017 55.000 0.00 0.00 37.82 3.34
1873 1970 0.727398 CTTTCGCCCTGTTCGGAATC 59.273 55.000 0.00 0.00 33.16 2.52
1874 1971 0.036306 ACTTTCGCCCTGTTCGGAAT 59.964 50.000 0.00 0.00 33.16 3.01
1875 1972 0.179040 AACTTTCGCCCTGTTCGGAA 60.179 50.000 0.00 0.00 33.16 4.30
1876 1973 0.179040 AAACTTTCGCCCTGTTCGGA 60.179 50.000 0.00 0.00 33.16 4.55
1877 1974 1.515081 TAAACTTTCGCCCTGTTCGG 58.485 50.000 0.00 0.00 0.00 4.30
1878 1975 3.824414 ATTAAACTTTCGCCCTGTTCG 57.176 42.857 0.00 0.00 0.00 3.95
1879 1976 6.250344 AGTTATTAAACTTTCGCCCTGTTC 57.750 37.500 0.00 0.00 43.60 3.18
1911 2008 6.579666 AGTGTGAATGTGTGCTGAATAAAT 57.420 33.333 0.00 0.00 0.00 1.40
1929 2026 5.176774 TGTGCTGAATCTAAAACGTAGTGTG 59.823 40.000 0.00 0.00 45.00 3.82
1935 2032 5.065988 ACTTTGTGTGCTGAATCTAAAACGT 59.934 36.000 0.00 0.00 0.00 3.99
1947 2044 2.667481 CACCAAACAACTTTGTGTGCTG 59.333 45.455 6.74 0.73 43.50 4.41
1948 2045 2.298729 ACACCAAACAACTTTGTGTGCT 59.701 40.909 6.74 0.00 43.50 4.40
1951 2048 4.762765 TGACTACACCAAACAACTTTGTGT 59.237 37.500 0.00 0.00 41.31 3.72
1952 2049 5.303747 TGACTACACCAAACAACTTTGTG 57.696 39.130 0.00 0.00 41.31 3.33
1953 2050 5.968528 TTGACTACACCAAACAACTTTGT 57.031 34.783 0.00 0.00 44.72 2.83
1954 2051 9.528018 AATAATTGACTACACCAAACAACTTTG 57.472 29.630 0.00 0.00 37.16 2.77
2027 2128 5.095691 AGACAAAATATTAAGATGCGGCG 57.904 39.130 0.51 0.51 0.00 6.46
2046 2147 1.602377 CGTCAGGAAACCACCAAAGAC 59.398 52.381 0.00 0.00 0.00 3.01
2051 2152 0.391597 GTCTCGTCAGGAAACCACCA 59.608 55.000 0.00 0.00 0.00 4.17
2054 2155 1.006571 GCGTCTCGTCAGGAAACCA 60.007 57.895 0.00 0.00 0.00 3.67
2209 2310 6.036470 GCCCAGAAGCAACATCTTATTTTAC 58.964 40.000 0.00 0.00 0.00 2.01
2315 2416 2.948979 CAGGTGCAAGAACTAACCAACA 59.051 45.455 0.00 0.00 35.01 3.33
2373 2617 8.041143 ACCCATTATTATTAGTACAAGAGGCA 57.959 34.615 0.00 0.00 0.00 4.75
2380 2624 9.607988 CAGTGTGAACCCATTATTATTAGTACA 57.392 33.333 0.00 0.00 0.00 2.90
2381 2625 8.557029 GCAGTGTGAACCCATTATTATTAGTAC 58.443 37.037 0.00 0.00 0.00 2.73
2382 2626 8.268605 TGCAGTGTGAACCCATTATTATTAGTA 58.731 33.333 0.00 0.00 0.00 1.82
2402 2646 0.395311 AGCCCATCATTCCTGCAGTG 60.395 55.000 13.81 4.59 0.00 3.66
2453 2697 8.160765 TCAAAGTATGAATAACCCAAGACTTCA 58.839 33.333 0.00 0.00 34.30 3.02
2543 2787 6.203530 CACTGTCTCTGAAAAATGCTTCACTA 59.796 38.462 0.00 0.00 32.00 2.74
2636 2882 8.070034 TCGTTAGTCCATAAGTCTTTCCATTA 57.930 34.615 0.00 0.00 0.00 1.90
2688 2935 9.337396 AGATCTCTCAATACACTACTCTGTAAG 57.663 37.037 0.00 0.00 30.40 2.34
2691 2938 9.502091 GATAGATCTCTCAATACACTACTCTGT 57.498 37.037 0.00 0.00 0.00 3.41
2703 2950 6.683312 TGCATTGAGGATAGATCTCTCAAT 57.317 37.500 23.04 23.04 45.24 2.57
2713 2960 5.384063 ACTAGTCGATGCATTGAGGATAG 57.616 43.478 17.28 18.93 0.00 2.08
2782 3029 1.944024 AGCGAGATCAGAGTAAGTCCG 59.056 52.381 0.00 0.00 0.00 4.79
2786 3033 1.406898 TGGCAGCGAGATCAGAGTAAG 59.593 52.381 0.00 0.00 0.00 2.34
2795 3042 1.741706 CAAGTGAAATGGCAGCGAGAT 59.258 47.619 0.00 0.00 0.00 2.75
2802 3049 8.965819 ACATAACATATTACAAGTGAAATGGCA 58.034 29.630 0.00 0.00 0.00 4.92
2803 3050 9.801873 AACATAACATATTACAAGTGAAATGGC 57.198 29.630 0.00 0.00 0.00 4.40
3233 3486 0.523072 CTGAGGCACCAAATCAACGG 59.477 55.000 0.00 0.00 0.00 4.44
3341 3594 0.255890 GACCATGAAGCTAGGGGCAA 59.744 55.000 0.00 0.00 44.79 4.52
3361 3614 2.159226 CGGAGTGTTGAGACCCATCTAC 60.159 54.545 0.00 0.00 34.34 2.59
3391 3644 0.733150 GGGCATTACAACTTCGCTCC 59.267 55.000 0.00 0.00 0.00 4.70
3467 3722 3.755112 AGCTGAGAGACATCATCATGG 57.245 47.619 0.00 0.00 33.82 3.66
3534 3789 5.401972 CGCAAAAATAGAAGCACATGAACAA 59.598 36.000 0.00 0.00 0.00 2.83
3540 3795 5.119931 TGTTCGCAAAAATAGAAGCACAT 57.880 34.783 0.00 0.00 0.00 3.21
3558 3813 5.062558 GCCACTTGCATATGAACAATTGTTC 59.937 40.000 34.41 34.41 45.92 3.18
3585 3840 2.416431 GGTGCATTGGAGAAAGCATGAC 60.416 50.000 0.00 0.00 39.43 3.06
3589 3844 0.178967 TGGGTGCATTGGAGAAAGCA 60.179 50.000 0.00 0.00 34.10 3.91
3621 3876 6.890268 AGGTAAGTTACATCAGGGGAAAATTC 59.110 38.462 14.81 0.00 0.00 2.17
3764 4019 3.812609 ACAAACAAAATTGGGCCGAAATC 59.187 39.130 3.59 0.00 34.56 2.17
3775 4030 7.932335 TGAAGATACACGGTACAAACAAAATT 58.068 30.769 0.00 0.00 0.00 1.82
3777 4032 6.922247 TGAAGATACACGGTACAAACAAAA 57.078 33.333 0.00 0.00 0.00 2.44
3882 4144 7.715249 TCTTAACATTAGCTCAATCCGCTATTT 59.285 33.333 0.00 0.00 39.50 1.40
3980 4242 5.125100 ACTGAACACCAATGCAATGTTAG 57.875 39.130 0.21 6.33 36.70 2.34
3986 4248 2.757314 TGACAACTGAACACCAATGCAA 59.243 40.909 0.00 0.00 0.00 4.08
3988 4250 3.435105 TTGACAACTGAACACCAATGC 57.565 42.857 0.00 0.00 0.00 3.56
4071 4333 1.324736 GTGCGTTAGAAGAATGGCGAG 59.675 52.381 0.00 0.00 0.00 5.03
4080 4342 4.433022 CGCTTTCAAGTAGTGCGTTAGAAG 60.433 45.833 0.00 0.00 41.45 2.85
4092 4354 8.350722 CCTATAGTGATACTTCGCTTTCAAGTA 58.649 37.037 0.00 0.00 42.61 2.24
4127 4389 5.019470 ACTGTTCACTCCTGTCATCATCTA 58.981 41.667 0.00 0.00 0.00 1.98
4132 4394 4.816385 TCAAAACTGTTCACTCCTGTCATC 59.184 41.667 0.00 0.00 0.00 2.92
4142 4404 3.380004 TGGTCATGGTCAAAACTGTTCAC 59.620 43.478 0.00 0.00 0.00 3.18
4144 4406 3.380004 TGTGGTCATGGTCAAAACTGTTC 59.620 43.478 0.00 0.00 0.00 3.18
4147 4409 2.951642 AGTGTGGTCATGGTCAAAACTG 59.048 45.455 0.00 0.00 0.00 3.16
4167 4429 6.102897 ACTCGGTATTTCTTGGATATGGAG 57.897 41.667 0.00 0.00 0.00 3.86
4217 4480 7.490962 TCACTATCATAATTTTAACCCTGCG 57.509 36.000 0.00 0.00 0.00 5.18
4271 4535 2.416893 GGAAATTTCCTCTCACGCTGTC 59.583 50.000 26.94 0.00 44.11 3.51
4364 4628 1.062365 CAACGCACGGGCATATGTG 59.938 57.895 11.77 0.00 41.24 3.21
4365 4629 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
4366 4630 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
4367 4631 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
4368 4632 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
4369 4633 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
4397 4661 4.710324 TCTCTCCCGTTGCTTCTTAAAAA 58.290 39.130 0.00 0.00 0.00 1.94
4398 4662 4.345859 TCTCTCCCGTTGCTTCTTAAAA 57.654 40.909 0.00 0.00 0.00 1.52
4399 4663 4.553330 ATCTCTCCCGTTGCTTCTTAAA 57.447 40.909 0.00 0.00 0.00 1.52
4400 4664 5.670792 TTATCTCTCCCGTTGCTTCTTAA 57.329 39.130 0.00 0.00 0.00 1.85
4401 4665 5.871396 ATTATCTCTCCCGTTGCTTCTTA 57.129 39.130 0.00 0.00 0.00 2.10
4402 4666 4.762289 ATTATCTCTCCCGTTGCTTCTT 57.238 40.909 0.00 0.00 0.00 2.52
4403 4667 4.762289 AATTATCTCTCCCGTTGCTTCT 57.238 40.909 0.00 0.00 0.00 2.85
4404 4668 7.497925 AATTAATTATCTCTCCCGTTGCTTC 57.502 36.000 0.00 0.00 0.00 3.86
4405 4669 7.339466 ACAAATTAATTATCTCTCCCGTTGCTT 59.661 33.333 0.01 0.00 0.00 3.91
4406 4670 6.828785 ACAAATTAATTATCTCTCCCGTTGCT 59.171 34.615 0.01 0.00 0.00 3.91
4407 4671 7.027778 ACAAATTAATTATCTCTCCCGTTGC 57.972 36.000 0.01 0.00 0.00 4.17
4408 4672 7.282224 TGGACAAATTAATTATCTCTCCCGTTG 59.718 37.037 0.01 0.00 0.00 4.10
4409 4673 7.282450 GTGGACAAATTAATTATCTCTCCCGTT 59.718 37.037 0.01 0.00 0.00 4.44
4410 4674 6.766467 GTGGACAAATTAATTATCTCTCCCGT 59.234 38.462 0.01 0.00 0.00 5.28
4411 4675 6.204882 GGTGGACAAATTAATTATCTCTCCCG 59.795 42.308 0.01 0.00 0.00 5.14
4412 4676 7.060421 TGGTGGACAAATTAATTATCTCTCCC 58.940 38.462 0.01 0.00 0.00 4.30
4413 4677 8.519799 TTGGTGGACAAATTAATTATCTCTCC 57.480 34.615 0.01 7.64 35.79 3.71
4427 4691 2.424246 GAGACCGTTTTTGGTGGACAAA 59.576 45.455 0.00 0.00 46.82 2.83
4428 4692 2.018515 GAGACCGTTTTTGGTGGACAA 58.981 47.619 0.00 0.00 44.01 3.18
4429 4693 1.670791 GAGACCGTTTTTGGTGGACA 58.329 50.000 0.00 0.00 44.01 4.02
4430 4694 0.949397 GGAGACCGTTTTTGGTGGAC 59.051 55.000 0.00 0.00 44.01 4.02
4431 4695 0.533308 CGGAGACCGTTTTTGGTGGA 60.533 55.000 1.80 0.00 44.01 4.02
4432 4696 1.946267 CGGAGACCGTTTTTGGTGG 59.054 57.895 1.80 0.00 44.01 4.61
4447 4711 2.601666 ACAGCTCCTCACTGCGGA 60.602 61.111 0.00 0.00 38.79 5.54
4448 4712 2.125753 GACAGCTCCTCACTGCGG 60.126 66.667 0.00 0.00 38.79 5.69
4449 4713 0.735632 GAAGACAGCTCCTCACTGCG 60.736 60.000 0.00 0.00 38.79 5.18
4450 4714 0.607620 AGAAGACAGCTCCTCACTGC 59.392 55.000 0.00 0.00 38.79 4.40
4451 4715 2.170166 AGAGAAGACAGCTCCTCACTG 58.830 52.381 0.00 0.00 41.08 3.66
4452 4716 2.603075 AGAGAAGACAGCTCCTCACT 57.397 50.000 0.00 0.00 32.82 3.41
4453 4717 3.130340 CCTAAGAGAAGACAGCTCCTCAC 59.870 52.174 0.00 0.00 32.82 3.51
4454 4718 3.360867 CCTAAGAGAAGACAGCTCCTCA 58.639 50.000 0.00 0.00 32.82 3.86
4455 4719 2.693074 CCCTAAGAGAAGACAGCTCCTC 59.307 54.545 0.00 0.00 32.82 3.71
4456 4720 2.745968 CCCTAAGAGAAGACAGCTCCT 58.254 52.381 0.00 0.00 32.82 3.69
4457 4721 1.138069 GCCCTAAGAGAAGACAGCTCC 59.862 57.143 0.00 0.00 32.82 4.70
4458 4722 1.827969 TGCCCTAAGAGAAGACAGCTC 59.172 52.381 0.00 0.00 0.00 4.09
4459 4723 1.944177 TGCCCTAAGAGAAGACAGCT 58.056 50.000 0.00 0.00 0.00 4.24
4460 4724 2.093235 ACATGCCCTAAGAGAAGACAGC 60.093 50.000 0.00 0.00 0.00 4.40
4461 4725 3.902881 ACATGCCCTAAGAGAAGACAG 57.097 47.619 0.00 0.00 0.00 3.51
4462 4726 4.041567 TCAAACATGCCCTAAGAGAAGACA 59.958 41.667 0.00 0.00 0.00 3.41
4463 4727 4.393371 GTCAAACATGCCCTAAGAGAAGAC 59.607 45.833 0.00 0.00 0.00 3.01
4464 4728 4.565652 GGTCAAACATGCCCTAAGAGAAGA 60.566 45.833 0.00 0.00 0.00 2.87
4465 4729 3.691609 GGTCAAACATGCCCTAAGAGAAG 59.308 47.826 0.00 0.00 0.00 2.85
4466 4730 3.561313 GGGTCAAACATGCCCTAAGAGAA 60.561 47.826 0.00 0.00 39.31 2.87
4467 4731 2.026262 GGGTCAAACATGCCCTAAGAGA 60.026 50.000 0.00 0.00 39.31 3.10
4468 4732 2.369394 GGGTCAAACATGCCCTAAGAG 58.631 52.381 0.00 0.00 39.31 2.85
4469 4733 1.339631 CGGGTCAAACATGCCCTAAGA 60.340 52.381 4.12 0.00 40.22 2.10
4470 4734 1.094785 CGGGTCAAACATGCCCTAAG 58.905 55.000 4.12 0.00 40.22 2.18
4471 4735 0.963355 GCGGGTCAAACATGCCCTAA 60.963 55.000 4.12 0.00 40.22 2.69
4472 4736 1.377987 GCGGGTCAAACATGCCCTA 60.378 57.895 4.12 0.00 40.22 3.53
4473 4737 2.676471 GCGGGTCAAACATGCCCT 60.676 61.111 4.12 0.00 40.22 5.19
4474 4738 4.114997 CGCGGGTCAAACATGCCC 62.115 66.667 0.00 0.00 39.03 5.36
4475 4739 3.039202 CTCGCGGGTCAAACATGCC 62.039 63.158 6.13 0.00 0.00 4.40
4476 4740 1.369091 ATCTCGCGGGTCAAACATGC 61.369 55.000 5.57 0.00 0.00 4.06
4477 4741 0.652592 GATCTCGCGGGTCAAACATG 59.347 55.000 5.57 0.00 0.00 3.21
4478 4742 0.537188 AGATCTCGCGGGTCAAACAT 59.463 50.000 5.57 0.00 0.00 2.71
4479 4743 0.320374 AAGATCTCGCGGGTCAAACA 59.680 50.000 5.57 0.00 0.00 2.83
4480 4744 0.721718 CAAGATCTCGCGGGTCAAAC 59.278 55.000 5.57 0.00 0.00 2.93
4481 4745 0.606096 TCAAGATCTCGCGGGTCAAA 59.394 50.000 5.57 0.00 0.00 2.69
4482 4746 0.824109 ATCAAGATCTCGCGGGTCAA 59.176 50.000 5.57 0.00 0.00 3.18
4483 4747 1.609072 CTATCAAGATCTCGCGGGTCA 59.391 52.381 5.57 0.00 0.00 4.02
4484 4748 1.609555 ACTATCAAGATCTCGCGGGTC 59.390 52.381 5.57 2.78 0.00 4.46
4485 4749 1.338337 CACTATCAAGATCTCGCGGGT 59.662 52.381 5.57 0.00 0.00 5.28
4486 4750 1.336332 CCACTATCAAGATCTCGCGGG 60.336 57.143 6.13 1.01 0.00 6.13
4487 4751 1.338337 ACCACTATCAAGATCTCGCGG 59.662 52.381 6.13 0.00 0.00 6.46
4488 4752 2.389059 CACCACTATCAAGATCTCGCG 58.611 52.381 0.00 0.00 0.00 5.87
4489 4753 2.546795 CCCACCACTATCAAGATCTCGC 60.547 54.545 0.00 0.00 0.00 5.03
4490 4754 2.036475 CCCCACCACTATCAAGATCTCG 59.964 54.545 0.00 0.00 0.00 4.04
4491 4755 3.041946 ACCCCACCACTATCAAGATCTC 58.958 50.000 0.00 0.00 0.00 2.75
4492 4756 3.041946 GACCCCACCACTATCAAGATCT 58.958 50.000 0.00 0.00 0.00 2.75
4493 4757 2.224066 CGACCCCACCACTATCAAGATC 60.224 54.545 0.00 0.00 0.00 2.75
4494 4758 1.762957 CGACCCCACCACTATCAAGAT 59.237 52.381 0.00 0.00 0.00 2.40
4495 4759 1.191535 CGACCCCACCACTATCAAGA 58.808 55.000 0.00 0.00 0.00 3.02
4496 4760 1.191535 TCGACCCCACCACTATCAAG 58.808 55.000 0.00 0.00 0.00 3.02
4497 4761 1.760613 GATCGACCCCACCACTATCAA 59.239 52.381 0.00 0.00 0.00 2.57
4498 4762 1.063190 AGATCGACCCCACCACTATCA 60.063 52.381 0.00 0.00 0.00 2.15
4499 4763 1.341531 CAGATCGACCCCACCACTATC 59.658 57.143 0.00 0.00 0.00 2.08
4500 4764 1.414158 CAGATCGACCCCACCACTAT 58.586 55.000 0.00 0.00 0.00 2.12
4501 4765 1.327690 GCAGATCGACCCCACCACTA 61.328 60.000 0.00 0.00 0.00 2.74
4502 4766 2.660064 GCAGATCGACCCCACCACT 61.660 63.158 0.00 0.00 0.00 4.00
4503 4767 2.125106 GCAGATCGACCCCACCAC 60.125 66.667 0.00 0.00 0.00 4.16
4504 4768 3.770040 CGCAGATCGACCCCACCA 61.770 66.667 0.00 0.00 41.67 4.17
4505 4769 3.771160 ACGCAGATCGACCCCACC 61.771 66.667 0.00 0.00 41.67 4.61
4506 4770 2.509336 CACGCAGATCGACCCCAC 60.509 66.667 0.00 0.00 41.67 4.61
4507 4771 3.770040 CCACGCAGATCGACCCCA 61.770 66.667 0.00 0.00 41.67 4.96
4511 4775 4.796231 ACCGCCACGCAGATCGAC 62.796 66.667 0.00 0.00 41.67 4.20
4512 4776 4.794439 CACCGCCACGCAGATCGA 62.794 66.667 0.00 0.00 41.67 3.59
4513 4777 4.794439 TCACCGCCACGCAGATCG 62.794 66.667 0.00 0.00 45.38 3.69
4514 4778 3.188786 GTCACCGCCACGCAGATC 61.189 66.667 0.00 0.00 0.00 2.75
4515 4779 4.760047 GGTCACCGCCACGCAGAT 62.760 66.667 0.00 0.00 0.00 2.90
4526 4790 3.014584 AAACATGAGTTGGGTGGTCACC 61.015 50.000 11.47 11.47 43.30 4.02
4527 4791 1.981256 AACATGAGTTGGGTGGTCAC 58.019 50.000 0.00 0.00 36.39 3.67
4528 4792 2.746279 AAACATGAGTTGGGTGGTCA 57.254 45.000 0.00 0.00 38.17 4.02
4529 4793 3.243737 GGAAAAACATGAGTTGGGTGGTC 60.244 47.826 0.00 0.00 38.17 4.02
4530 4794 2.698274 GGAAAAACATGAGTTGGGTGGT 59.302 45.455 0.00 0.00 38.17 4.16
4531 4795 2.965147 AGGAAAAACATGAGTTGGGTGG 59.035 45.455 0.00 0.00 38.17 4.61
4532 4796 4.099266 TGAAGGAAAAACATGAGTTGGGTG 59.901 41.667 0.00 0.00 38.17 4.61
4533 4797 4.285863 TGAAGGAAAAACATGAGTTGGGT 58.714 39.130 0.00 0.00 38.17 4.51
4534 4798 4.262164 CCTGAAGGAAAAACATGAGTTGGG 60.262 45.833 0.00 0.00 36.10 4.12
4535 4799 4.797275 GCCTGAAGGAAAAACATGAGTTGG 60.797 45.833 0.00 0.00 36.10 3.77
4536 4800 4.301628 GCCTGAAGGAAAAACATGAGTTG 58.698 43.478 0.00 0.00 36.10 3.16
4537 4801 3.321968 GGCCTGAAGGAAAAACATGAGTT 59.678 43.478 0.00 0.00 37.10 3.01
4538 4802 2.893489 GGCCTGAAGGAAAAACATGAGT 59.107 45.455 0.00 0.00 37.39 3.41
4539 4803 2.232208 GGGCCTGAAGGAAAAACATGAG 59.768 50.000 0.84 0.00 37.39 2.90
4540 4804 2.247358 GGGCCTGAAGGAAAAACATGA 58.753 47.619 0.84 0.00 37.39 3.07
4541 4805 1.067635 CGGGCCTGAAGGAAAAACATG 60.068 52.381 5.28 0.00 37.39 3.21
4542 4806 1.256812 CGGGCCTGAAGGAAAAACAT 58.743 50.000 5.28 0.00 37.39 2.71
4543 4807 1.460273 GCGGGCCTGAAGGAAAAACA 61.460 55.000 18.31 0.00 37.39 2.83
4544 4808 1.289066 GCGGGCCTGAAGGAAAAAC 59.711 57.895 18.31 0.00 37.39 2.43
4545 4809 1.906333 GGCGGGCCTGAAGGAAAAA 60.906 57.895 18.31 0.00 37.39 1.94
4546 4810 2.282887 GGCGGGCCTGAAGGAAAA 60.283 61.111 18.31 0.00 37.39 2.29
4547 4811 3.256960 AGGCGGGCCTGAAGGAAA 61.257 61.111 18.31 0.00 46.22 3.13
4560 4824 3.382832 AACCCCGAGACAGAGGCG 61.383 66.667 0.00 0.00 0.00 5.52
4561 4825 2.266055 CAACCCCGAGACAGAGGC 59.734 66.667 0.00 0.00 0.00 4.70
4562 4826 1.293498 CACAACCCCGAGACAGAGG 59.707 63.158 0.00 0.00 0.00 3.69
4563 4827 1.293498 CCACAACCCCGAGACAGAG 59.707 63.158 0.00 0.00 0.00 3.35
4564 4828 2.879233 GCCACAACCCCGAGACAGA 61.879 63.158 0.00 0.00 0.00 3.41
4565 4829 2.358737 GCCACAACCCCGAGACAG 60.359 66.667 0.00 0.00 0.00 3.51
4566 4830 2.847234 AGCCACAACCCCGAGACA 60.847 61.111 0.00 0.00 0.00 3.41
4567 4831 2.358737 CAGCCACAACCCCGAGAC 60.359 66.667 0.00 0.00 0.00 3.36
4568 4832 4.329545 GCAGCCACAACCCCGAGA 62.330 66.667 0.00 0.00 0.00 4.04
4573 4837 3.927481 GAGGAGGCAGCCACAACCC 62.927 68.421 15.80 6.47 0.00 4.11
4574 4838 2.360475 GAGGAGGCAGCCACAACC 60.360 66.667 15.80 11.29 0.00 3.77
4575 4839 0.610232 AATGAGGAGGCAGCCACAAC 60.610 55.000 15.80 5.91 32.29 3.32
4576 4840 0.112995 AAATGAGGAGGCAGCCACAA 59.887 50.000 15.80 0.00 32.29 3.33
4577 4841 0.609957 CAAATGAGGAGGCAGCCACA 60.610 55.000 15.80 8.60 33.07 4.17
4578 4842 1.318158 CCAAATGAGGAGGCAGCCAC 61.318 60.000 15.80 7.41 0.00 5.01
4579 4843 1.000521 CCAAATGAGGAGGCAGCCA 60.001 57.895 15.80 0.00 0.00 4.75
4580 4844 1.000396 ACCAAATGAGGAGGCAGCC 60.000 57.895 1.84 1.84 0.00 4.85
4581 4845 1.318158 CCACCAAATGAGGAGGCAGC 61.318 60.000 0.00 0.00 32.56 5.25
4582 4846 2.877975 CCACCAAATGAGGAGGCAG 58.122 57.895 0.00 0.00 32.56 4.85
4585 4849 1.408822 GGTAGCCACCAAATGAGGAGG 60.409 57.143 0.00 0.00 45.04 4.30
4586 4850 2.044123 GGTAGCCACCAAATGAGGAG 57.956 55.000 0.00 0.00 45.04 3.69
4611 4875 3.977244 CAACCGTGCCCCAACAGC 61.977 66.667 0.00 0.00 0.00 4.40
4612 4876 1.671901 AAACAACCGTGCCCCAACAG 61.672 55.000 0.00 0.00 0.00 3.16
4613 4877 1.668101 GAAACAACCGTGCCCCAACA 61.668 55.000 0.00 0.00 0.00 3.33
4614 4878 1.066752 GAAACAACCGTGCCCCAAC 59.933 57.895 0.00 0.00 0.00 3.77
4615 4879 2.128507 GGAAACAACCGTGCCCCAA 61.129 57.895 0.00 0.00 0.00 4.12
4616 4880 2.519780 GGAAACAACCGTGCCCCA 60.520 61.111 0.00 0.00 0.00 4.96
4617 4881 2.519780 TGGAAACAACCGTGCCCC 60.520 61.111 0.00 0.00 37.44 5.80
4618 4882 2.725641 GTGGAAACAACCGTGCCC 59.274 61.111 0.00 0.00 46.06 5.36
4619 4883 2.725641 GGTGGAAACAACCGTGCC 59.274 61.111 0.00 0.00 44.45 5.01
4624 4888 8.370945 CGTAAGAAAGAGTGGTGGAAACAACC 62.371 46.154 0.00 0.00 46.26 3.77
4625 4889 5.503520 CGTAAGAAAGAGTGGTGGAAACAAC 60.504 44.000 0.00 0.00 46.93 3.32
4626 4890 4.573201 CGTAAGAAAGAGTGGTGGAAACAA 59.427 41.667 0.00 0.00 41.97 2.83
4627 4891 4.124238 CGTAAGAAAGAGTGGTGGAAACA 58.876 43.478 0.00 0.00 43.02 2.83
4628 4892 4.727235 CGTAAGAAAGAGTGGTGGAAAC 57.273 45.455 0.00 0.00 43.02 2.78
4644 4908 1.390123 CATCTGGTTGCACGTCGTAAG 59.610 52.381 0.00 0.00 0.00 2.34
4645 4909 1.424403 CATCTGGTTGCACGTCGTAA 58.576 50.000 0.00 0.00 0.00 3.18
4646 4910 0.389296 CCATCTGGTTGCACGTCGTA 60.389 55.000 0.00 0.00 0.00 3.43
4647 4911 1.667830 CCATCTGGTTGCACGTCGT 60.668 57.895 0.00 0.00 0.00 4.34
4648 4912 0.740868 ATCCATCTGGTTGCACGTCG 60.741 55.000 0.00 0.00 36.34 5.12
4649 4913 1.453155 AATCCATCTGGTTGCACGTC 58.547 50.000 0.00 0.00 36.34 4.34
4650 4914 2.027192 AGTAATCCATCTGGTTGCACGT 60.027 45.455 0.00 0.00 36.34 4.49
4651 4915 2.632377 AGTAATCCATCTGGTTGCACG 58.368 47.619 0.00 0.00 36.34 5.34
4652 4916 6.073003 GCTATTAGTAATCCATCTGGTTGCAC 60.073 42.308 0.00 0.00 36.34 4.57
4653 4917 5.997746 GCTATTAGTAATCCATCTGGTTGCA 59.002 40.000 0.00 0.00 36.34 4.08
4654 4918 5.997746 TGCTATTAGTAATCCATCTGGTTGC 59.002 40.000 0.00 0.00 36.34 4.17
4655 4919 6.148480 GCTGCTATTAGTAATCCATCTGGTTG 59.852 42.308 0.00 0.00 36.34 3.77
4656 4920 6.234177 GCTGCTATTAGTAATCCATCTGGTT 58.766 40.000 0.00 0.00 36.34 3.67
4657 4921 5.567623 CGCTGCTATTAGTAATCCATCTGGT 60.568 44.000 0.00 0.00 36.34 4.00
4658 4922 4.867047 CGCTGCTATTAGTAATCCATCTGG 59.133 45.833 0.00 0.00 0.00 3.86
4659 4923 4.328440 GCGCTGCTATTAGTAATCCATCTG 59.672 45.833 0.00 0.00 0.00 2.90
4660 4924 4.021104 TGCGCTGCTATTAGTAATCCATCT 60.021 41.667 9.73 0.00 0.00 2.90
4661 4925 4.092091 GTGCGCTGCTATTAGTAATCCATC 59.908 45.833 9.73 0.00 0.00 3.51
4662 4926 3.997021 GTGCGCTGCTATTAGTAATCCAT 59.003 43.478 9.73 0.00 0.00 3.41
4663 4927 3.181470 TGTGCGCTGCTATTAGTAATCCA 60.181 43.478 9.73 0.00 0.00 3.41
4664 4928 3.184581 GTGTGCGCTGCTATTAGTAATCC 59.815 47.826 9.73 0.00 0.00 3.01
4665 4929 3.802139 TGTGTGCGCTGCTATTAGTAATC 59.198 43.478 9.73 0.00 0.00 1.75
4666 4930 3.792401 TGTGTGCGCTGCTATTAGTAAT 58.208 40.909 9.73 0.17 0.00 1.89
4667 4931 3.239587 TGTGTGCGCTGCTATTAGTAA 57.760 42.857 9.73 0.00 0.00 2.24
4668 4932 2.951457 TGTGTGCGCTGCTATTAGTA 57.049 45.000 9.73 0.00 0.00 1.82
4669 4933 2.205074 GATGTGTGCGCTGCTATTAGT 58.795 47.619 9.73 0.00 0.00 2.24
4670 4934 1.528586 GGATGTGTGCGCTGCTATTAG 59.471 52.381 9.73 0.00 0.00 1.73
4671 4935 1.581934 GGATGTGTGCGCTGCTATTA 58.418 50.000 9.73 0.00 0.00 0.98
4672 4936 1.097547 GGGATGTGTGCGCTGCTATT 61.098 55.000 9.73 0.00 0.00 1.73
4673 4937 1.524621 GGGATGTGTGCGCTGCTAT 60.525 57.895 9.73 0.00 0.00 2.97
4674 4938 2.125147 GGGATGTGTGCGCTGCTA 60.125 61.111 9.73 0.00 0.00 3.49
4677 4941 2.513065 GAAACGGGATGTGTGCGCTG 62.513 60.000 9.73 0.00 0.00 5.18
4678 4942 2.281484 AAACGGGATGTGTGCGCT 60.281 55.556 9.73 0.00 0.00 5.92
4679 4943 1.922135 ATGAAACGGGATGTGTGCGC 61.922 55.000 0.00 0.00 0.00 6.09
4680 4944 0.521291 AATGAAACGGGATGTGTGCG 59.479 50.000 0.00 0.00 0.00 5.34
4681 4945 2.477863 GCTAATGAAACGGGATGTGTGC 60.478 50.000 0.00 0.00 0.00 4.57
4682 4946 2.746904 TGCTAATGAAACGGGATGTGTG 59.253 45.455 0.00 0.00 0.00 3.82
4683 4947 3.066291 TGCTAATGAAACGGGATGTGT 57.934 42.857 0.00 0.00 0.00 3.72
4684 4948 5.749596 TTATGCTAATGAAACGGGATGTG 57.250 39.130 0.00 0.00 0.00 3.21
4685 4949 6.061441 TGATTATGCTAATGAAACGGGATGT 58.939 36.000 0.00 0.00 0.00 3.06
4686 4950 6.205464 ACTGATTATGCTAATGAAACGGGATG 59.795 38.462 0.00 0.00 0.00 3.51
4687 4951 6.205464 CACTGATTATGCTAATGAAACGGGAT 59.795 38.462 0.00 0.00 0.00 3.85
4688 4952 5.527214 CACTGATTATGCTAATGAAACGGGA 59.473 40.000 0.00 0.00 0.00 5.14
4689 4953 5.751680 CACTGATTATGCTAATGAAACGGG 58.248 41.667 0.00 0.00 0.00 5.28
4690 4954 5.207768 GCACTGATTATGCTAATGAAACGG 58.792 41.667 0.00 0.00 40.08 4.44
4691 4955 5.809464 TGCACTGATTATGCTAATGAAACG 58.191 37.500 0.00 0.00 43.77 3.60
4692 4956 9.173939 GTTATGCACTGATTATGCTAATGAAAC 57.826 33.333 0.00 0.00 43.77 2.78
4693 4957 8.352201 GGTTATGCACTGATTATGCTAATGAAA 58.648 33.333 0.00 0.00 43.77 2.69
4694 4958 7.501892 TGGTTATGCACTGATTATGCTAATGAA 59.498 33.333 0.00 0.00 43.77 2.57
4695 4959 6.997476 TGGTTATGCACTGATTATGCTAATGA 59.003 34.615 0.00 0.00 43.77 2.57
4696 4960 7.173735 TCTGGTTATGCACTGATTATGCTAATG 59.826 37.037 0.00 0.00 43.77 1.90
4697 4961 7.226441 TCTGGTTATGCACTGATTATGCTAAT 58.774 34.615 0.00 0.00 43.77 1.73
4698 4962 6.591001 TCTGGTTATGCACTGATTATGCTAA 58.409 36.000 0.00 0.00 43.77 3.09
4699 4963 6.173427 TCTGGTTATGCACTGATTATGCTA 57.827 37.500 0.00 0.00 43.77 3.49
4700 4964 5.039920 TCTGGTTATGCACTGATTATGCT 57.960 39.130 0.00 0.00 43.77 3.79
4701 4965 5.954296 ATCTGGTTATGCACTGATTATGC 57.046 39.130 0.00 0.00 43.68 3.14
4702 4966 7.982224 CCATATCTGGTTATGCACTGATTATG 58.018 38.462 0.00 0.00 37.79 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.