Multiple sequence alignment - TraesCS7D01G185500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G185500 chr7D 100.000 2576 0 0 1 2576 138350891 138348316 0.000000e+00 4758.0
1 TraesCS7D01G185500 chr7D 89.713 1186 74 20 629 1801 138380106 138378956 0.000000e+00 1471.0
2 TraesCS7D01G185500 chr7D 92.894 774 30 18 1821 2576 138378900 138378134 0.000000e+00 1101.0
3 TraesCS7D01G185500 chr7D 73.087 379 72 18 1 368 69949291 69948932 9.750000e-20 108.0
4 TraesCS7D01G185500 chr7D 88.000 75 6 3 2319 2390 138376183 138376109 4.570000e-13 86.1
5 TraesCS7D01G185500 chr7A 86.244 1672 115 46 782 2381 138382652 138381024 0.000000e+00 1707.0
6 TraesCS7D01G185500 chr7A 89.357 498 40 7 629 1114 138383300 138382804 4.710000e-172 614.0
7 TraesCS7D01G185500 chr7B 91.223 1014 61 18 629 1629 103884318 103883320 0.000000e+00 1354.0
8 TraesCS7D01G185500 chr7B 89.510 1001 73 24 609 1596 103739540 103738559 0.000000e+00 1238.0
9 TraesCS7D01G185500 chr7B 84.307 873 81 29 1682 2514 103883310 103882454 0.000000e+00 802.0
10 TraesCS7D01G185500 chr7B 85.249 461 54 11 1834 2289 103738367 103737916 1.810000e-126 462.0
11 TraesCS7D01G185500 chr2B 76.768 495 98 14 36 517 196254047 196254537 7.070000e-66 261.0
12 TraesCS7D01G185500 chr2D 84.082 245 36 3 224 465 521504458 521504702 1.540000e-57 233.0
13 TraesCS7D01G185500 chr2D 80.435 276 45 8 1918 2189 607641504 607641234 4.350000e-48 202.0
14 TraesCS7D01G185500 chr6A 80.645 279 44 9 1915 2189 581743981 581743709 9.340000e-50 207.0
15 TraesCS7D01G185500 chr6D 80.727 275 44 8 1919 2189 434450356 434450087 3.360000e-49 206.0
16 TraesCS7D01G185500 chr6D 80.657 274 44 8 1920 2189 434444160 434443892 1.210000e-48 204.0
17 TraesCS7D01G185500 chr6B 80.576 278 45 8 1915 2189 657166994 657166723 3.360000e-49 206.0
18 TraesCS7D01G185500 chr6B 72.340 470 95 29 2 460 573626946 573627391 5.820000e-22 115.0
19 TraesCS7D01G185500 chr5B 75.989 354 62 14 120 460 281450926 281450583 7.380000e-36 161.0
20 TraesCS7D01G185500 chr4A 79.646 226 43 3 1304 1527 100551152 100550928 2.650000e-35 159.0
21 TraesCS7D01G185500 chr5D 74.023 435 85 19 2 419 13589874 13589451 4.440000e-33 152.0
22 TraesCS7D01G185500 chr4D 77.108 249 51 6 1298 1544 365188131 365188375 3.460000e-29 139.0
23 TraesCS7D01G185500 chrUn 77.489 231 40 7 1307 1531 38635199 38634975 7.480000e-26 128.0
24 TraesCS7D01G185500 chrUn 76.923 234 42 7 1304 1531 263451670 263451897 3.480000e-24 122.0
25 TraesCS7D01G185500 chr3D 76.957 230 43 5 1307 1531 17413720 17413496 3.480000e-24 122.0
26 TraesCS7D01G185500 chr3D 75.665 263 39 16 108 368 588867894 588867655 9.750000e-20 108.0
27 TraesCS7D01G185500 chr5A 82.051 117 14 5 316 430 317497752 317497863 2.730000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G185500 chr7D 138348316 138350891 2575 True 4758.000000 4758 100.000000 1 2576 1 chr7D.!!$R2 2575
1 TraesCS7D01G185500 chr7D 138376109 138380106 3997 True 886.033333 1471 90.202333 629 2576 3 chr7D.!!$R3 1947
2 TraesCS7D01G185500 chr7A 138381024 138383300 2276 True 1160.500000 1707 87.800500 629 2381 2 chr7A.!!$R1 1752
3 TraesCS7D01G185500 chr7B 103882454 103884318 1864 True 1078.000000 1354 87.765000 629 2514 2 chr7B.!!$R2 1885
4 TraesCS7D01G185500 chr7B 103737916 103739540 1624 True 850.000000 1238 87.379500 609 2289 2 chr7B.!!$R1 1680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.036388 TCCTTAGGTTGGCGCAGAAG 60.036 55.0 10.83 2.52 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 2240 0.813184 GGCTACTACCAGTACACGCA 59.187 55.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.782042 GTTGGAGACGGCTAAGCG 58.218 61.111 0.00 0.00 0.00 4.68
25 26 1.080025 GTTGGAGACGGCTAAGCGT 60.080 57.895 0.00 0.00 0.00 5.07
26 27 1.077089 GTTGGAGACGGCTAAGCGTC 61.077 60.000 0.00 5.24 34.33 5.19
27 28 2.278013 GGAGACGGCTAAGCGTCG 60.278 66.667 0.00 0.00 37.25 5.12
28 29 2.484203 GAGACGGCTAAGCGTCGT 59.516 61.111 0.00 3.91 37.25 4.34
30 31 2.484203 GACGGCTAAGCGTCGTCT 59.516 61.111 11.32 0.00 46.49 4.18
31 32 1.583194 GACGGCTAAGCGTCGTCTC 60.583 63.158 11.32 0.00 46.49 3.36
32 33 2.278013 CGGCTAAGCGTCGTCTCC 60.278 66.667 0.00 0.00 0.00 3.71
33 34 2.882876 GGCTAAGCGTCGTCTCCA 59.117 61.111 0.00 0.00 0.00 3.86
34 35 1.214589 GGCTAAGCGTCGTCTCCAA 59.785 57.895 0.00 0.00 0.00 3.53
35 36 0.179108 GGCTAAGCGTCGTCTCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
36 37 0.924090 GCTAAGCGTCGTCTCCAATG 59.076 55.000 0.00 0.00 0.00 2.82
37 38 0.924090 CTAAGCGTCGTCTCCAATGC 59.076 55.000 0.00 0.00 0.00 3.56
38 39 0.459585 TAAGCGTCGTCTCCAATGCC 60.460 55.000 0.00 0.00 0.00 4.40
39 40 2.125512 GCGTCGTCTCCAATGCCT 60.126 61.111 0.00 0.00 0.00 4.75
40 41 2.167861 GCGTCGTCTCCAATGCCTC 61.168 63.158 0.00 0.00 0.00 4.70
41 42 1.874019 CGTCGTCTCCAATGCCTCG 60.874 63.158 0.00 0.00 0.00 4.63
42 43 1.511305 GTCGTCTCCAATGCCTCGA 59.489 57.895 0.00 0.00 0.00 4.04
43 44 0.802607 GTCGTCTCCAATGCCTCGAC 60.803 60.000 0.00 0.00 40.11 4.20
44 45 1.874019 CGTCTCCAATGCCTCGACG 60.874 63.158 0.00 0.00 40.92 5.12
45 46 1.519455 GTCTCCAATGCCTCGACGG 60.519 63.158 0.00 0.00 0.00 4.79
62 63 3.706140 GCGAGATGGCCAAGTACG 58.294 61.111 10.96 14.76 0.00 3.67
63 64 1.883084 GCGAGATGGCCAAGTACGG 60.883 63.158 10.96 0.00 0.00 4.02
70 71 4.078516 GCCAAGTACGGCGGGAGT 62.079 66.667 13.24 0.00 43.52 3.85
71 72 2.125673 CCAAGTACGGCGGGAGTG 60.126 66.667 13.24 3.77 0.00 3.51
72 73 2.125673 CAAGTACGGCGGGAGTGG 60.126 66.667 13.24 0.00 0.00 4.00
73 74 2.602568 AAGTACGGCGGGAGTGGT 60.603 61.111 13.24 0.00 0.00 4.16
74 75 2.643232 AAGTACGGCGGGAGTGGTC 61.643 63.158 13.24 0.00 0.00 4.02
75 76 3.066814 GTACGGCGGGAGTGGTCT 61.067 66.667 13.24 0.00 0.00 3.85
76 77 2.753043 TACGGCGGGAGTGGTCTC 60.753 66.667 13.24 0.00 39.76 3.36
77 78 3.278072 TACGGCGGGAGTGGTCTCT 62.278 63.158 13.24 0.00 40.29 3.10
78 79 3.827898 CGGCGGGAGTGGTCTCTC 61.828 72.222 0.00 0.00 40.29 3.20
82 83 3.827898 GGGAGTGGTCTCTCGGCG 61.828 72.222 0.00 0.00 40.29 6.46
83 84 2.750637 GGAGTGGTCTCTCGGCGA 60.751 66.667 10.14 10.14 40.29 5.54
84 85 2.766400 GGAGTGGTCTCTCGGCGAG 61.766 68.421 30.10 30.10 40.29 5.03
85 86 1.745864 GAGTGGTCTCTCGGCGAGA 60.746 63.158 34.59 34.59 46.32 4.04
90 91 2.189784 TCTCTCGGCGAGATCGGT 59.810 61.111 36.58 0.00 43.72 4.69
91 92 2.180862 TCTCTCGGCGAGATCGGTG 61.181 63.158 36.58 25.03 43.72 4.94
92 93 3.815569 CTCTCGGCGAGATCGGTGC 62.816 68.421 36.58 0.00 42.62 5.01
93 94 4.933064 CTCGGCGAGATCGGTGCC 62.933 72.222 32.07 13.83 45.39 5.01
97 98 4.451150 GCGAGATCGGTGCCACCA 62.451 66.667 15.45 1.31 38.47 4.17
98 99 2.264480 CGAGATCGGTGCCACCAA 59.736 61.111 15.45 0.00 38.47 3.67
99 100 2.100631 CGAGATCGGTGCCACCAAC 61.101 63.158 15.45 4.30 38.47 3.77
100 101 1.003839 GAGATCGGTGCCACCAACA 60.004 57.895 15.45 0.00 38.47 3.33
101 102 1.298859 GAGATCGGTGCCACCAACAC 61.299 60.000 15.45 2.07 38.47 3.32
102 103 1.302511 GATCGGTGCCACCAACACT 60.303 57.895 15.45 0.00 38.47 3.55
103 104 1.577328 GATCGGTGCCACCAACACTG 61.577 60.000 15.45 0.00 44.24 3.66
104 105 3.964875 CGGTGCCACCAACACTGC 61.965 66.667 15.45 0.00 38.47 4.40
105 106 3.605664 GGTGCCACCAACACTGCC 61.606 66.667 9.55 0.00 38.42 4.85
106 107 2.519302 GTGCCACCAACACTGCCT 60.519 61.111 0.00 0.00 35.12 4.75
107 108 2.203337 TGCCACCAACACTGCCTC 60.203 61.111 0.00 0.00 0.00 4.70
108 109 2.985847 GCCACCAACACTGCCTCC 60.986 66.667 0.00 0.00 0.00 4.30
109 110 2.839098 CCACCAACACTGCCTCCT 59.161 61.111 0.00 0.00 0.00 3.69
110 111 1.151450 CCACCAACACTGCCTCCTT 59.849 57.895 0.00 0.00 0.00 3.36
111 112 0.890996 CCACCAACACTGCCTCCTTC 60.891 60.000 0.00 0.00 0.00 3.46
112 113 0.179020 CACCAACACTGCCTCCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
113 114 0.550914 ACCAACACTGCCTCCTTCAA 59.449 50.000 0.00 0.00 0.00 2.69
114 115 1.242076 CCAACACTGCCTCCTTCAAG 58.758 55.000 0.00 0.00 0.00 3.02
115 116 1.242076 CAACACTGCCTCCTTCAAGG 58.758 55.000 0.00 0.00 39.62 3.61
116 117 1.140312 AACACTGCCTCCTTCAAGGA 58.860 50.000 5.84 5.84 43.43 3.36
117 118 0.398318 ACACTGCCTCCTTCAAGGAC 59.602 55.000 0.34 0.00 40.06 3.85
118 119 0.322008 CACTGCCTCCTTCAAGGACC 60.322 60.000 0.34 0.00 40.06 4.46
119 120 0.768221 ACTGCCTCCTTCAAGGACCA 60.768 55.000 0.34 1.86 40.06 4.02
120 121 0.322008 CTGCCTCCTTCAAGGACCAC 60.322 60.000 0.34 0.00 40.06 4.16
121 122 1.002011 GCCTCCTTCAAGGACCACC 60.002 63.158 0.34 0.00 40.06 4.61
122 123 1.296715 CCTCCTTCAAGGACCACCG 59.703 63.158 0.34 0.00 40.06 4.94
123 124 1.376037 CTCCTTCAAGGACCACCGC 60.376 63.158 0.34 0.00 40.06 5.68
124 125 2.359975 CCTTCAAGGACCACCGCC 60.360 66.667 0.00 0.00 37.67 6.13
125 126 2.359975 CTTCAAGGACCACCGCCC 60.360 66.667 0.00 0.00 41.83 6.13
126 127 2.852075 TTCAAGGACCACCGCCCT 60.852 61.111 0.00 0.00 41.83 5.19
127 128 2.804828 CTTCAAGGACCACCGCCCTC 62.805 65.000 0.00 0.00 41.83 4.30
128 129 3.322466 CAAGGACCACCGCCCTCT 61.322 66.667 0.00 0.00 41.83 3.69
129 130 3.003763 AAGGACCACCGCCCTCTC 61.004 66.667 0.00 0.00 41.83 3.20
147 148 3.006728 CCCCAGCCCACGTCCTTA 61.007 66.667 0.00 0.00 0.00 2.69
148 149 2.584608 CCCAGCCCACGTCCTTAG 59.415 66.667 0.00 0.00 0.00 2.18
149 150 2.584608 CCAGCCCACGTCCTTAGG 59.415 66.667 0.00 0.00 0.00 2.69
150 151 2.291043 CCAGCCCACGTCCTTAGGT 61.291 63.158 0.00 0.00 0.00 3.08
151 152 1.677552 CAGCCCACGTCCTTAGGTT 59.322 57.895 0.00 0.00 0.00 3.50
152 153 0.673644 CAGCCCACGTCCTTAGGTTG 60.674 60.000 0.00 0.00 0.00 3.77
153 154 1.376812 GCCCACGTCCTTAGGTTGG 60.377 63.158 0.00 3.89 31.22 3.77
154 155 1.376812 CCCACGTCCTTAGGTTGGC 60.377 63.158 0.00 0.00 0.00 4.52
155 156 1.740296 CCACGTCCTTAGGTTGGCG 60.740 63.158 0.00 2.26 0.00 5.69
156 157 2.047560 ACGTCCTTAGGTTGGCGC 60.048 61.111 0.00 0.00 0.00 6.53
157 158 2.047655 CGTCCTTAGGTTGGCGCA 60.048 61.111 10.83 0.00 0.00 6.09
158 159 2.100631 CGTCCTTAGGTTGGCGCAG 61.101 63.158 10.83 0.00 0.00 5.18
159 160 1.295423 GTCCTTAGGTTGGCGCAGA 59.705 57.895 10.83 0.00 0.00 4.26
160 161 0.321298 GTCCTTAGGTTGGCGCAGAA 60.321 55.000 10.83 0.00 0.00 3.02
161 162 0.036388 TCCTTAGGTTGGCGCAGAAG 60.036 55.000 10.83 2.52 0.00 2.85
162 163 1.648467 CCTTAGGTTGGCGCAGAAGC 61.648 60.000 10.83 11.22 37.42 3.86
163 164 0.955428 CTTAGGTTGGCGCAGAAGCA 60.955 55.000 19.01 1.52 42.27 3.91
164 165 0.322456 TTAGGTTGGCGCAGAAGCAT 60.322 50.000 19.01 9.36 42.27 3.79
165 166 0.322456 TAGGTTGGCGCAGAAGCATT 60.322 50.000 19.01 5.74 42.27 3.56
166 167 1.444895 GGTTGGCGCAGAAGCATTG 60.445 57.895 10.83 0.00 42.27 2.82
167 168 1.286880 GTTGGCGCAGAAGCATTGT 59.713 52.632 10.83 0.00 42.27 2.71
168 169 1.005294 GTTGGCGCAGAAGCATTGTG 61.005 55.000 10.83 0.00 43.11 3.33
179 180 3.903876 GCATTGTGCACGACATAGG 57.096 52.632 9.51 0.00 44.26 2.57
180 181 1.368641 GCATTGTGCACGACATAGGA 58.631 50.000 9.51 0.00 44.26 2.94
181 182 1.737236 GCATTGTGCACGACATAGGAA 59.263 47.619 9.51 0.00 44.26 3.36
182 183 2.223112 GCATTGTGCACGACATAGGAAG 60.223 50.000 9.51 0.00 44.26 3.46
183 184 3.261580 CATTGTGCACGACATAGGAAGA 58.738 45.455 9.51 0.00 33.40 2.87
184 185 3.394674 TTGTGCACGACATAGGAAGAA 57.605 42.857 13.13 0.00 33.40 2.52
185 186 2.959516 TGTGCACGACATAGGAAGAAG 58.040 47.619 13.13 0.00 0.00 2.85
186 187 1.661112 GTGCACGACATAGGAAGAAGC 59.339 52.381 0.00 0.00 0.00 3.86
187 188 1.275010 TGCACGACATAGGAAGAAGCA 59.725 47.619 0.00 0.00 0.00 3.91
188 189 1.929836 GCACGACATAGGAAGAAGCAG 59.070 52.381 0.00 0.00 0.00 4.24
189 190 2.675317 GCACGACATAGGAAGAAGCAGT 60.675 50.000 0.00 0.00 0.00 4.40
190 191 3.428999 GCACGACATAGGAAGAAGCAGTA 60.429 47.826 0.00 0.00 0.00 2.74
191 192 4.744570 CACGACATAGGAAGAAGCAGTAA 58.255 43.478 0.00 0.00 0.00 2.24
192 193 4.800993 CACGACATAGGAAGAAGCAGTAAG 59.199 45.833 0.00 0.00 0.00 2.34
193 194 4.142138 ACGACATAGGAAGAAGCAGTAAGG 60.142 45.833 0.00 0.00 0.00 2.69
194 195 4.098044 CGACATAGGAAGAAGCAGTAAGGA 59.902 45.833 0.00 0.00 0.00 3.36
195 196 5.221342 CGACATAGGAAGAAGCAGTAAGGAT 60.221 44.000 0.00 0.00 0.00 3.24
196 197 6.168270 ACATAGGAAGAAGCAGTAAGGATC 57.832 41.667 0.00 0.00 0.00 3.36
197 198 5.663106 ACATAGGAAGAAGCAGTAAGGATCA 59.337 40.000 0.00 0.00 0.00 2.92
198 199 6.328672 ACATAGGAAGAAGCAGTAAGGATCAT 59.671 38.462 0.00 0.00 0.00 2.45
199 200 5.289083 AGGAAGAAGCAGTAAGGATCATC 57.711 43.478 0.00 0.00 0.00 2.92
200 201 4.968080 AGGAAGAAGCAGTAAGGATCATCT 59.032 41.667 0.00 0.00 0.00 2.90
201 202 5.055812 GGAAGAAGCAGTAAGGATCATCTG 58.944 45.833 0.00 0.00 0.00 2.90
204 205 2.515926 GCAGTAAGGATCATCTGCGA 57.484 50.000 5.45 0.00 42.51 5.10
205 206 2.402305 GCAGTAAGGATCATCTGCGAG 58.598 52.381 5.45 0.00 42.51 5.03
206 207 2.402305 CAGTAAGGATCATCTGCGAGC 58.598 52.381 0.00 0.00 0.00 5.03
207 208 1.000827 AGTAAGGATCATCTGCGAGCG 60.001 52.381 0.00 0.00 0.00 5.03
208 209 1.032794 TAAGGATCATCTGCGAGCGT 58.967 50.000 0.00 0.00 0.00 5.07
209 210 0.249238 AAGGATCATCTGCGAGCGTC 60.249 55.000 0.00 0.00 0.00 5.19
210 211 2.013483 GGATCATCTGCGAGCGTCG 61.013 63.158 0.00 3.50 43.89 5.12
211 212 2.013483 GATCATCTGCGAGCGTCGG 61.013 63.158 8.96 0.00 40.84 4.79
212 213 3.490793 ATCATCTGCGAGCGTCGGG 62.491 63.158 8.96 0.00 40.84 5.14
231 232 4.785453 GACTGCCGGGAAGCCCTG 62.785 72.222 2.18 0.00 42.67 4.45
273 274 3.702048 CCCGAAGCCCGACTCCAA 61.702 66.667 0.00 0.00 41.76 3.53
274 275 2.434359 CCGAAGCCCGACTCCAAC 60.434 66.667 0.00 0.00 41.76 3.77
275 276 2.809601 CGAAGCCCGACTCCAACG 60.810 66.667 0.00 0.00 41.76 4.10
276 277 3.119096 GAAGCCCGACTCCAACGC 61.119 66.667 0.00 0.00 0.00 4.84
277 278 4.699522 AAGCCCGACTCCAACGCC 62.700 66.667 0.00 0.00 0.00 5.68
280 281 2.281208 CCCGACTCCAACGCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
281 282 1.674322 CCCGACTCCAACGCCAAAT 60.674 57.895 0.00 0.00 0.00 2.32
282 283 1.644786 CCCGACTCCAACGCCAAATC 61.645 60.000 0.00 0.00 0.00 2.17
283 284 0.673644 CCGACTCCAACGCCAAATCT 60.674 55.000 0.00 0.00 0.00 2.40
284 285 0.443869 CGACTCCAACGCCAAATCTG 59.556 55.000 0.00 0.00 0.00 2.90
285 286 0.804989 GACTCCAACGCCAAATCTGG 59.195 55.000 0.00 0.00 46.65 3.86
294 295 3.064079 CCAAATCTGGCGACGATGA 57.936 52.632 0.00 0.00 35.39 2.92
295 296 0.652592 CCAAATCTGGCGACGATGAC 59.347 55.000 0.00 0.00 35.39 3.06
296 297 1.358877 CAAATCTGGCGACGATGACA 58.641 50.000 0.00 0.00 0.00 3.58
297 298 1.325640 CAAATCTGGCGACGATGACAG 59.674 52.381 0.00 8.00 0.00 3.51
298 299 0.817654 AATCTGGCGACGATGACAGA 59.182 50.000 17.19 17.19 43.33 3.41
299 300 0.383590 ATCTGGCGACGATGACAGAG 59.616 55.000 19.06 0.00 42.55 3.35
300 301 1.226802 CTGGCGACGATGACAGAGG 60.227 63.158 8.54 0.00 32.86 3.69
301 302 1.657751 CTGGCGACGATGACAGAGGA 61.658 60.000 8.54 0.00 32.86 3.71
302 303 1.064946 GGCGACGATGACAGAGGAG 59.935 63.158 0.00 0.00 0.00 3.69
303 304 1.064946 GCGACGATGACAGAGGAGG 59.935 63.158 0.00 0.00 0.00 4.30
304 305 1.377366 GCGACGATGACAGAGGAGGA 61.377 60.000 0.00 0.00 0.00 3.71
305 306 0.660488 CGACGATGACAGAGGAGGAG 59.340 60.000 0.00 0.00 0.00 3.69
306 307 0.383949 GACGATGACAGAGGAGGAGC 59.616 60.000 0.00 0.00 0.00 4.70
307 308 1.040339 ACGATGACAGAGGAGGAGCC 61.040 60.000 0.00 0.00 0.00 4.70
308 309 1.039785 CGATGACAGAGGAGGAGCCA 61.040 60.000 0.00 0.00 40.02 4.75
309 310 0.463620 GATGACAGAGGAGGAGCCAC 59.536 60.000 0.00 0.00 40.02 5.01
310 311 0.980231 ATGACAGAGGAGGAGCCACC 60.980 60.000 0.00 0.00 40.02 4.61
311 312 2.681778 ACAGAGGAGGAGCCACCG 60.682 66.667 0.00 0.00 44.74 4.94
312 313 3.465403 CAGAGGAGGAGCCACCGG 61.465 72.222 0.00 0.00 44.74 5.28
339 340 3.339994 TGACACGGCTTACGAGGTCAC 62.340 57.143 12.21 0.00 46.65 3.67
343 344 3.364277 GGCTTACGAGGTCACCATC 57.636 57.895 0.00 0.00 0.00 3.51
344 345 0.535335 GGCTTACGAGGTCACCATCA 59.465 55.000 0.00 0.00 0.00 3.07
345 346 1.066430 GGCTTACGAGGTCACCATCAA 60.066 52.381 0.00 0.00 0.00 2.57
346 347 2.271800 GCTTACGAGGTCACCATCAAG 58.728 52.381 0.00 0.00 0.00 3.02
347 348 2.353803 GCTTACGAGGTCACCATCAAGT 60.354 50.000 0.00 0.00 0.00 3.16
348 349 3.119245 GCTTACGAGGTCACCATCAAGTA 60.119 47.826 0.00 0.00 0.00 2.24
349 350 4.441634 GCTTACGAGGTCACCATCAAGTAT 60.442 45.833 0.00 0.00 0.00 2.12
350 351 5.221185 GCTTACGAGGTCACCATCAAGTATA 60.221 44.000 0.00 0.00 0.00 1.47
351 352 6.516860 GCTTACGAGGTCACCATCAAGTATAT 60.517 42.308 0.00 0.00 0.00 0.86
352 353 5.201713 ACGAGGTCACCATCAAGTATATG 57.798 43.478 0.00 0.00 0.00 1.78
363 364 7.246171 CCATCAAGTATATGGTAGCTTAGGT 57.754 40.000 0.00 0.00 39.30 3.08
364 365 7.680730 CCATCAAGTATATGGTAGCTTAGGTT 58.319 38.462 0.00 0.00 39.30 3.50
365 366 8.157476 CCATCAAGTATATGGTAGCTTAGGTTT 58.843 37.037 0.00 0.00 39.30 3.27
366 367 9.561069 CATCAAGTATATGGTAGCTTAGGTTTT 57.439 33.333 0.00 0.00 0.00 2.43
368 369 9.609346 TCAAGTATATGGTAGCTTAGGTTTTTC 57.391 33.333 0.00 0.00 0.00 2.29
369 370 9.614792 CAAGTATATGGTAGCTTAGGTTTTTCT 57.385 33.333 0.00 0.00 0.00 2.52
374 375 7.939784 ATGGTAGCTTAGGTTTTTCTTAAGG 57.060 36.000 1.85 0.00 36.59 2.69
375 376 6.844829 TGGTAGCTTAGGTTTTTCTTAAGGT 58.155 36.000 1.85 6.65 44.49 3.50
376 377 7.292319 TGGTAGCTTAGGTTTTTCTTAAGGTT 58.708 34.615 1.85 0.00 41.40 3.50
377 378 7.781219 TGGTAGCTTAGGTTTTTCTTAAGGTTT 59.219 33.333 1.85 0.00 41.40 3.27
378 379 8.636213 GGTAGCTTAGGTTTTTCTTAAGGTTTT 58.364 33.333 1.85 0.00 41.40 2.43
386 387 7.703621 AGGTTTTTCTTAAGGTTTTTAGTTCGC 59.296 33.333 1.85 0.00 0.00 4.70
387 388 7.703621 GGTTTTTCTTAAGGTTTTTAGTTCGCT 59.296 33.333 1.85 0.00 0.00 4.93
388 389 8.529102 GTTTTTCTTAAGGTTTTTAGTTCGCTG 58.471 33.333 1.85 0.00 0.00 5.18
389 390 7.556733 TTTCTTAAGGTTTTTAGTTCGCTGA 57.443 32.000 1.85 0.00 0.00 4.26
390 391 7.556733 TTCTTAAGGTTTTTAGTTCGCTGAA 57.443 32.000 1.85 0.00 0.00 3.02
391 392 7.739498 TCTTAAGGTTTTTAGTTCGCTGAAT 57.261 32.000 1.85 0.00 0.00 2.57
392 393 8.836268 TCTTAAGGTTTTTAGTTCGCTGAATA 57.164 30.769 1.85 0.00 0.00 1.75
393 394 9.275398 TCTTAAGGTTTTTAGTTCGCTGAATAA 57.725 29.630 1.85 0.00 0.00 1.40
394 395 9.887406 CTTAAGGTTTTTAGTTCGCTGAATAAA 57.113 29.630 0.00 0.00 0.00 1.40
402 403 9.910511 TTTTAGTTCGCTGAATAAAATATCGTC 57.089 29.630 0.00 0.00 0.00 4.20
403 404 6.526566 AGTTCGCTGAATAAAATATCGTCC 57.473 37.500 0.00 0.00 0.00 4.79
404 405 5.175126 AGTTCGCTGAATAAAATATCGTCCG 59.825 40.000 0.00 0.00 0.00 4.79
405 406 3.985279 TCGCTGAATAAAATATCGTCCGG 59.015 43.478 0.00 0.00 0.00 5.14
406 407 3.739300 CGCTGAATAAAATATCGTCCGGT 59.261 43.478 0.00 0.00 0.00 5.28
407 408 4.210537 CGCTGAATAAAATATCGTCCGGTT 59.789 41.667 0.00 0.00 0.00 4.44
408 409 5.277154 CGCTGAATAAAATATCGTCCGGTTT 60.277 40.000 0.00 0.00 0.00 3.27
409 410 6.492254 GCTGAATAAAATATCGTCCGGTTTT 58.508 36.000 0.00 2.12 0.00 2.43
410 411 7.517101 CGCTGAATAAAATATCGTCCGGTTTTA 60.517 37.037 0.00 4.57 32.53 1.52
411 412 8.287503 GCTGAATAAAATATCGTCCGGTTTTAT 58.712 33.333 0.00 6.86 37.98 1.40
412 413 9.594038 CTGAATAAAATATCGTCCGGTTTTATG 57.406 33.333 15.15 4.19 37.04 1.90
413 414 9.327628 TGAATAAAATATCGTCCGGTTTTATGA 57.672 29.630 15.15 2.75 37.04 2.15
418 419 9.863845 AAAATATCGTCCGGTTTTATGAAAAAT 57.136 25.926 0.00 0.00 36.96 1.82
419 420 9.863845 AAATATCGTCCGGTTTTATGAAAAATT 57.136 25.926 0.00 0.00 36.96 1.82
423 424 7.474190 TCGTCCGGTTTTATGAAAAATTATCC 58.526 34.615 0.00 0.00 36.96 2.59
424 425 7.337436 TCGTCCGGTTTTATGAAAAATTATCCT 59.663 33.333 0.00 0.00 36.96 3.24
425 426 8.614346 CGTCCGGTTTTATGAAAAATTATCCTA 58.386 33.333 0.00 0.00 36.96 2.94
446 447 8.251750 TCCTAATTTACATGAACTTCGTTCTG 57.748 34.615 0.00 6.50 42.39 3.02
447 448 7.333423 TCCTAATTTACATGAACTTCGTTCTGG 59.667 37.037 0.00 3.36 42.39 3.86
448 449 6.877611 AATTTACATGAACTTCGTTCTGGT 57.122 33.333 0.00 8.15 42.39 4.00
449 450 6.877611 ATTTACATGAACTTCGTTCTGGTT 57.122 33.333 0.00 0.00 42.39 3.67
450 451 7.972832 ATTTACATGAACTTCGTTCTGGTTA 57.027 32.000 0.00 0.00 42.39 2.85
451 452 7.972832 TTTACATGAACTTCGTTCTGGTTAT 57.027 32.000 0.00 0.00 42.39 1.89
452 453 5.862924 ACATGAACTTCGTTCTGGTTATG 57.137 39.130 0.00 5.67 42.39 1.90
453 454 5.305585 ACATGAACTTCGTTCTGGTTATGT 58.694 37.500 0.00 6.19 42.39 2.29
454 455 5.408604 ACATGAACTTCGTTCTGGTTATGTC 59.591 40.000 0.00 0.00 42.39 3.06
455 456 4.951254 TGAACTTCGTTCTGGTTATGTCA 58.049 39.130 8.06 0.00 42.39 3.58
456 457 5.361427 TGAACTTCGTTCTGGTTATGTCAA 58.639 37.500 8.06 0.00 42.39 3.18
457 458 5.818336 TGAACTTCGTTCTGGTTATGTCAAA 59.182 36.000 8.06 0.00 42.39 2.69
458 459 6.316640 TGAACTTCGTTCTGGTTATGTCAAAA 59.683 34.615 8.06 0.00 42.39 2.44
459 460 6.877611 ACTTCGTTCTGGTTATGTCAAAAT 57.122 33.333 0.00 0.00 0.00 1.82
460 461 6.899114 ACTTCGTTCTGGTTATGTCAAAATC 58.101 36.000 0.00 0.00 0.00 2.17
461 462 5.873179 TCGTTCTGGTTATGTCAAAATCC 57.127 39.130 0.00 0.00 0.00 3.01
462 463 4.390603 TCGTTCTGGTTATGTCAAAATCCG 59.609 41.667 0.00 0.00 0.00 4.18
463 464 4.412207 GTTCTGGTTATGTCAAAATCCGC 58.588 43.478 0.00 0.00 0.00 5.54
464 465 3.013921 TCTGGTTATGTCAAAATCCGCC 58.986 45.455 0.00 0.00 0.00 6.13
465 466 3.016736 CTGGTTATGTCAAAATCCGCCT 58.983 45.455 0.00 0.00 0.00 5.52
466 467 2.752354 TGGTTATGTCAAAATCCGCCTG 59.248 45.455 0.00 0.00 0.00 4.85
467 468 2.479560 GGTTATGTCAAAATCCGCCTGC 60.480 50.000 0.00 0.00 0.00 4.85
468 469 2.418368 TATGTCAAAATCCGCCTGCT 57.582 45.000 0.00 0.00 0.00 4.24
469 470 1.549203 ATGTCAAAATCCGCCTGCTT 58.451 45.000 0.00 0.00 0.00 3.91
470 471 1.327303 TGTCAAAATCCGCCTGCTTT 58.673 45.000 0.00 0.00 0.00 3.51
471 472 1.000385 TGTCAAAATCCGCCTGCTTTG 60.000 47.619 0.00 0.00 0.00 2.77
472 473 1.000274 GTCAAAATCCGCCTGCTTTGT 60.000 47.619 2.75 0.00 32.00 2.83
473 474 2.227865 GTCAAAATCCGCCTGCTTTGTA 59.772 45.455 2.75 0.00 32.00 2.41
474 475 2.227865 TCAAAATCCGCCTGCTTTGTAC 59.772 45.455 0.00 0.00 32.00 2.90
475 476 0.802494 AAATCCGCCTGCTTTGTACG 59.198 50.000 0.00 0.00 0.00 3.67
476 477 0.036765 AATCCGCCTGCTTTGTACGA 60.037 50.000 0.00 0.00 0.00 3.43
477 478 0.036765 ATCCGCCTGCTTTGTACGAA 60.037 50.000 0.00 0.00 0.00 3.85
478 479 0.036765 TCCGCCTGCTTTGTACGAAT 60.037 50.000 0.00 0.00 0.00 3.34
479 480 0.802494 CCGCCTGCTTTGTACGAATT 59.198 50.000 0.00 0.00 0.00 2.17
480 481 2.004017 CCGCCTGCTTTGTACGAATTA 58.996 47.619 0.00 0.00 0.00 1.40
481 482 2.222953 CCGCCTGCTTTGTACGAATTAC 60.223 50.000 0.00 0.00 0.00 1.89
482 483 2.413796 CGCCTGCTTTGTACGAATTACA 59.586 45.455 0.00 0.00 39.05 2.41
483 484 3.063452 CGCCTGCTTTGTACGAATTACAT 59.937 43.478 0.00 0.00 40.53 2.29
484 485 4.436852 CGCCTGCTTTGTACGAATTACATT 60.437 41.667 0.00 0.00 40.53 2.71
485 486 5.220510 CGCCTGCTTTGTACGAATTACATTA 60.221 40.000 0.00 0.00 40.53 1.90
486 487 6.192360 GCCTGCTTTGTACGAATTACATTAG 58.808 40.000 0.00 0.00 40.53 1.73
487 488 6.715464 CCTGCTTTGTACGAATTACATTAGG 58.285 40.000 0.00 0.00 40.53 2.69
488 489 6.537301 CCTGCTTTGTACGAATTACATTAGGA 59.463 38.462 0.00 0.00 40.53 2.94
489 490 7.226720 CCTGCTTTGTACGAATTACATTAGGAT 59.773 37.037 0.00 0.00 40.53 3.24
490 491 9.256477 CTGCTTTGTACGAATTACATTAGGATA 57.744 33.333 0.00 0.00 40.53 2.59
491 492 9.602568 TGCTTTGTACGAATTACATTAGGATAA 57.397 29.630 0.00 0.00 40.53 1.75
523 524 7.928307 AGTTATTGAAATGTATGCAGACAGT 57.072 32.000 20.16 14.91 31.51 3.55
524 525 7.755591 AGTTATTGAAATGTATGCAGACAGTG 58.244 34.615 20.16 0.00 31.51 3.66
525 526 7.607607 AGTTATTGAAATGTATGCAGACAGTGA 59.392 33.333 20.16 7.72 31.51 3.41
526 527 5.611796 TTGAAATGTATGCAGACAGTGAC 57.388 39.130 20.16 14.71 31.51 3.67
527 528 3.679502 TGAAATGTATGCAGACAGTGACG 59.320 43.478 20.16 0.00 31.51 4.35
528 529 2.299993 ATGTATGCAGACAGTGACGG 57.700 50.000 20.16 0.00 31.51 4.79
529 530 0.966179 TGTATGCAGACAGTGACGGT 59.034 50.000 10.75 0.00 0.00 4.83
530 531 1.067846 TGTATGCAGACAGTGACGGTC 60.068 52.381 10.75 7.81 35.50 4.79
531 532 1.202582 GTATGCAGACAGTGACGGTCT 59.797 52.381 12.58 12.58 46.11 3.85
532 533 0.244994 ATGCAGACAGTGACGGTCTC 59.755 55.000 15.35 10.87 43.47 3.36
533 534 1.080434 GCAGACAGTGACGGTCTCC 60.080 63.158 15.35 2.96 43.47 3.71
544 545 3.826637 CGGTCTCCGGTAACAATGT 57.173 52.632 0.00 0.00 44.15 2.71
545 546 1.636988 CGGTCTCCGGTAACAATGTC 58.363 55.000 0.00 0.00 44.15 3.06
546 547 1.738030 CGGTCTCCGGTAACAATGTCC 60.738 57.143 0.00 0.00 44.15 4.02
547 548 1.276989 GGTCTCCGGTAACAATGTCCA 59.723 52.381 0.00 0.00 0.00 4.02
548 549 2.093128 GGTCTCCGGTAACAATGTCCAT 60.093 50.000 0.00 0.00 0.00 3.41
549 550 3.133362 GGTCTCCGGTAACAATGTCCATA 59.867 47.826 0.00 0.00 0.00 2.74
550 551 4.117685 GTCTCCGGTAACAATGTCCATAC 58.882 47.826 0.00 0.00 0.00 2.39
551 552 3.770388 TCTCCGGTAACAATGTCCATACA 59.230 43.478 0.00 0.00 40.69 2.29
561 562 2.979814 TGTCCATACATTGGTCCTCG 57.020 50.000 0.00 0.00 46.52 4.63
562 563 1.484653 TGTCCATACATTGGTCCTCGG 59.515 52.381 0.00 0.00 46.52 4.63
563 564 1.485066 GTCCATACATTGGTCCTCGGT 59.515 52.381 0.00 0.00 46.52 4.69
564 565 1.760613 TCCATACATTGGTCCTCGGTC 59.239 52.381 0.00 0.00 46.52 4.79
565 566 1.202651 CCATACATTGGTCCTCGGTCC 60.203 57.143 0.00 0.00 40.99 4.46
566 567 0.750850 ATACATTGGTCCTCGGTCCG 59.249 55.000 4.39 4.39 0.00 4.79
567 568 0.612732 TACATTGGTCCTCGGTCCGT 60.613 55.000 11.88 0.00 0.00 4.69
568 569 1.447838 CATTGGTCCTCGGTCCGTG 60.448 63.158 11.88 8.95 0.00 4.94
569 570 2.656069 ATTGGTCCTCGGTCCGTGG 61.656 63.158 23.67 23.67 41.16 4.94
570 571 3.813606 TTGGTCCTCGGTCCGTGGA 62.814 63.158 27.23 27.23 45.24 4.02
582 583 4.789075 CGTGGACGGACGCGGAAT 62.789 66.667 12.47 0.00 40.41 3.01
583 584 2.433664 GTGGACGGACGCGGAATT 60.434 61.111 12.47 0.00 0.00 2.17
584 585 2.030958 GTGGACGGACGCGGAATTT 61.031 57.895 12.47 0.00 0.00 1.82
585 586 2.030401 TGGACGGACGCGGAATTTG 61.030 57.895 12.47 0.00 0.00 2.32
586 587 2.097728 GACGGACGCGGAATTTGC 59.902 61.111 12.47 0.00 0.00 3.68
593 594 4.829518 GCGGAATTTGCGGTCGCC 62.830 66.667 12.30 0.00 40.44 5.54
603 604 3.853330 CGGTCGCCGTTGCAGATG 61.853 66.667 9.69 0.00 42.73 2.90
604 605 2.742372 GGTCGCCGTTGCAGATGT 60.742 61.111 0.00 0.00 37.32 3.06
605 606 1.447140 GGTCGCCGTTGCAGATGTA 60.447 57.895 0.00 0.00 37.32 2.29
606 607 1.693083 GGTCGCCGTTGCAGATGTAC 61.693 60.000 0.00 0.00 37.32 2.90
607 608 0.736325 GTCGCCGTTGCAGATGTACT 60.736 55.000 0.00 0.00 37.32 2.73
608 609 0.812549 TCGCCGTTGCAGATGTACTA 59.187 50.000 0.00 0.00 37.32 1.82
609 610 1.407618 TCGCCGTTGCAGATGTACTAT 59.592 47.619 0.00 0.00 37.32 2.12
610 611 2.159156 TCGCCGTTGCAGATGTACTATT 60.159 45.455 0.00 0.00 37.32 1.73
611 612 3.067040 TCGCCGTTGCAGATGTACTATTA 59.933 43.478 0.00 0.00 37.32 0.98
612 613 3.799963 CGCCGTTGCAGATGTACTATTAA 59.200 43.478 0.00 0.00 37.32 1.40
613 614 4.085055 CGCCGTTGCAGATGTACTATTAAG 60.085 45.833 0.00 0.00 37.32 1.85
619 620 8.906693 CGTTGCAGATGTACTATTAAGTATCTG 58.093 37.037 11.43 11.43 44.59 2.90
655 656 1.086067 TCGGCCTCGACTACGTACAG 61.086 60.000 0.00 0.00 40.88 2.74
663 664 1.781429 CGACTACGTACAGATGCATGC 59.219 52.381 11.82 11.82 34.56 4.06
666 667 2.103094 ACTACGTACAGATGCATGCCAT 59.897 45.455 16.68 8.81 36.70 4.40
700 701 0.249868 TCGTCTCACCAAGTGGCAAG 60.250 55.000 0.00 0.00 39.32 4.01
704 705 3.673484 CACCAAGTGGCAAGCCCG 61.673 66.667 8.89 0.00 39.32 6.13
730 731 3.060020 GCCTAGCGCCACTGTCGTA 62.060 63.158 2.29 0.00 0.00 3.43
760 768 2.969806 GATGTGCGTGTGGTGCCAG 61.970 63.158 0.00 0.00 0.00 4.85
761 769 3.474486 ATGTGCGTGTGGTGCCAGA 62.474 57.895 0.00 0.00 0.00 3.86
909 928 3.118665 TGGAGTACTATAAAACCGCCCAC 60.119 47.826 0.00 0.00 0.00 4.61
929 948 3.435186 GGAAGCGCTCTTGCCACC 61.435 66.667 12.06 2.25 34.96 4.61
934 953 2.949106 CGCTCTTGCCACCACAAG 59.051 61.111 0.00 0.00 46.86 3.16
964 983 1.959985 AGCATATCTGTCTCGTGGGAG 59.040 52.381 0.00 0.00 41.89 4.30
1238 1773 5.916883 CGTAAAGTTCCGTGTCTCTTTTCTA 59.083 40.000 0.00 0.00 33.22 2.10
1248 1786 1.623811 TCTCTTTTCTAGCAAGGCGGT 59.376 47.619 0.00 0.00 0.00 5.68
1253 1791 0.037326 TTCTAGCAAGGCGGTCACAG 60.037 55.000 0.00 0.00 0.00 3.66
1440 1986 1.218047 CTTCGGGTCCTTCATGCGA 59.782 57.895 0.00 0.00 0.00 5.10
1576 2122 1.772182 CTCCATCGACATCGCCTAAC 58.228 55.000 0.00 0.00 39.60 2.34
1632 2178 0.811616 CTTCCTAGCGTGACATGCCC 60.812 60.000 16.06 0.00 0.00 5.36
1639 2185 1.599047 CGTGACATGCCCTCTCCTT 59.401 57.895 0.00 0.00 0.00 3.36
1642 2188 1.003580 GTGACATGCCCTCTCCTTCAA 59.996 52.381 0.00 0.00 0.00 2.69
1643 2189 1.003580 TGACATGCCCTCTCCTTCAAC 59.996 52.381 0.00 0.00 0.00 3.18
1651 2197 1.694150 CCTCTCCTTCAACACCACTGA 59.306 52.381 0.00 0.00 0.00 3.41
1665 2217 2.764010 ACCACTGAACTATGTATGGCGA 59.236 45.455 0.00 0.00 0.00 5.54
1680 2233 1.135489 TGGCGATGACGTGTCTCTTAC 60.135 52.381 0.00 0.00 41.98 2.34
1687 2240 6.034683 GCGATGACGTGTCTCTTACTTTATTT 59.965 38.462 0.00 0.00 41.98 1.40
1697 2250 7.115805 TGTCTCTTACTTTATTTGCGTGTACTG 59.884 37.037 0.00 0.00 0.00 2.74
1706 2259 0.813184 TGCGTGTACTGGTAGTAGCC 59.187 55.000 0.00 0.00 30.12 3.93
1866 2496 1.689813 TGCAGTACGAAGGACCAGAAA 59.310 47.619 0.00 0.00 0.00 2.52
1869 2499 4.161565 TGCAGTACGAAGGACCAGAAATAT 59.838 41.667 0.00 0.00 0.00 1.28
2080 2712 1.353694 AGGCCACAGCTCTTCTTGATT 59.646 47.619 5.01 0.00 39.73 2.57
2121 2753 0.179113 AAGTGCTTTGCAACGTTGGG 60.179 50.000 28.33 5.81 41.47 4.12
2177 2809 3.132139 CTCCTCCCGTTCGCGAGA 61.132 66.667 9.59 1.68 44.71 4.04
2390 3093 9.779237 CGTAATTTCGCACTTAATAATAGAGTG 57.221 33.333 0.00 0.00 42.75 3.51
2489 3192 2.622942 TGCTAGAACAACTTTGCCAAGG 59.377 45.455 2.22 0.00 33.82 3.61
2544 3248 6.338146 TCATTTTGTCCATCCGAACTAGTAG 58.662 40.000 0.00 0.00 0.00 2.57
2545 3249 5.988310 TTTTGTCCATCCGAACTAGTAGA 57.012 39.130 3.59 0.00 0.00 2.59
2554 3258 6.531948 CCATCCGAACTAGTAGAAGTTTCAAG 59.468 42.308 3.59 0.00 39.78 3.02
2556 3260 5.047519 TCCGAACTAGTAGAAGTTTCAAGGG 60.048 44.000 3.59 0.00 39.78 3.95
2563 3267 0.179189 GAAGTTTCAAGGGATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.080025 ACGCTTAGCCGTCTCCAAC 60.080 57.895 0.00 0.00 36.61 3.77
8 9 3.373226 ACGCTTAGCCGTCTCCAA 58.627 55.556 0.00 0.00 36.61 3.53
14 15 2.484203 GAGACGACGCTTAGCCGT 59.516 61.111 8.13 8.13 45.30 5.68
15 16 2.278013 GGAGACGACGCTTAGCCG 60.278 66.667 0.00 0.00 0.00 5.52
16 17 0.179108 ATTGGAGACGACGCTTAGCC 60.179 55.000 0.00 0.00 0.00 3.93
17 18 0.924090 CATTGGAGACGACGCTTAGC 59.076 55.000 0.00 0.00 0.00 3.09
18 19 0.924090 GCATTGGAGACGACGCTTAG 59.076 55.000 0.00 0.00 0.00 2.18
19 20 0.459585 GGCATTGGAGACGACGCTTA 60.460 55.000 0.00 0.00 0.00 3.09
20 21 1.741770 GGCATTGGAGACGACGCTT 60.742 57.895 0.00 0.00 0.00 4.68
21 22 2.125512 GGCATTGGAGACGACGCT 60.126 61.111 0.00 0.00 0.00 5.07
22 23 2.125512 AGGCATTGGAGACGACGC 60.126 61.111 0.00 0.00 0.00 5.19
23 24 1.874019 CGAGGCATTGGAGACGACG 60.874 63.158 0.00 0.00 0.00 5.12
24 25 0.802607 GTCGAGGCATTGGAGACGAC 60.803 60.000 0.00 0.00 41.84 4.34
25 26 1.511305 GTCGAGGCATTGGAGACGA 59.489 57.895 0.00 0.00 0.00 4.20
26 27 1.874019 CGTCGAGGCATTGGAGACG 60.874 63.158 1.99 1.99 46.32 4.18
27 28 1.519455 CCGTCGAGGCATTGGAGAC 60.519 63.158 0.00 0.00 0.00 3.36
28 29 2.892640 CCGTCGAGGCATTGGAGA 59.107 61.111 0.00 0.00 0.00 3.71
45 46 1.883084 CCGTACTTGGCCATCTCGC 60.883 63.158 6.09 0.00 0.00 5.03
46 47 4.420143 CCGTACTTGGCCATCTCG 57.580 61.111 6.09 9.67 0.00 4.04
54 55 2.125673 CACTCCCGCCGTACTTGG 60.126 66.667 0.00 0.00 0.00 3.61
55 56 2.125673 CCACTCCCGCCGTACTTG 60.126 66.667 0.00 0.00 0.00 3.16
56 57 2.602568 ACCACTCCCGCCGTACTT 60.603 61.111 0.00 0.00 0.00 2.24
57 58 3.066814 GACCACTCCCGCCGTACT 61.067 66.667 0.00 0.00 0.00 2.73
58 59 3.061260 GAGACCACTCCCGCCGTAC 62.061 68.421 0.00 0.00 37.19 3.67
59 60 2.753043 GAGACCACTCCCGCCGTA 60.753 66.667 0.00 0.00 37.19 4.02
60 61 4.680537 AGAGACCACTCCCGCCGT 62.681 66.667 0.00 0.00 43.53 5.68
61 62 3.827898 GAGAGACCACTCCCGCCG 61.828 72.222 0.00 0.00 43.53 6.46
62 63 3.827898 CGAGAGACCACTCCCGCC 61.828 72.222 0.00 0.00 43.53 6.13
63 64 3.827898 CCGAGAGACCACTCCCGC 61.828 72.222 0.00 0.00 41.75 6.13
64 65 3.827898 GCCGAGAGACCACTCCCG 61.828 72.222 0.00 0.00 42.51 5.14
65 66 3.827898 CGCCGAGAGACCACTCCC 61.828 72.222 0.00 0.00 43.53 4.30
66 67 2.750637 TCGCCGAGAGACCACTCC 60.751 66.667 0.00 0.00 43.53 3.85
75 76 3.889044 GCACCGATCTCGCCGAGA 61.889 66.667 20.41 20.41 43.20 4.04
76 77 4.933064 GGCACCGATCTCGCCGAG 62.933 72.222 8.05 8.05 35.79 4.63
80 81 3.950794 TTGGTGGCACCGATCTCGC 62.951 63.158 30.14 5.75 42.58 5.03
81 82 2.100631 GTTGGTGGCACCGATCTCG 61.101 63.158 28.72 0.00 42.58 4.04
82 83 1.003839 TGTTGGTGGCACCGATCTC 60.004 57.895 28.72 16.78 42.58 2.75
83 84 1.302511 GTGTTGGTGGCACCGATCT 60.303 57.895 28.72 0.00 42.58 2.75
84 85 1.302511 AGTGTTGGTGGCACCGATC 60.303 57.895 28.72 22.67 42.58 3.69
85 86 1.600636 CAGTGTTGGTGGCACCGAT 60.601 57.895 28.72 11.28 42.58 4.18
86 87 2.203139 CAGTGTTGGTGGCACCGA 60.203 61.111 30.14 26.74 42.58 4.69
87 88 3.964875 GCAGTGTTGGTGGCACCG 61.965 66.667 30.14 16.47 42.58 4.94
88 89 3.605664 GGCAGTGTTGGTGGCACC 61.606 66.667 29.75 29.75 40.16 5.01
89 90 2.519302 AGGCAGTGTTGGTGGCAC 60.519 61.111 9.70 9.70 42.81 5.01
90 91 2.203337 GAGGCAGTGTTGGTGGCA 60.203 61.111 0.00 0.00 42.81 4.92
91 92 2.983725 AAGGAGGCAGTGTTGGTGGC 62.984 60.000 0.00 0.00 40.72 5.01
92 93 0.890996 GAAGGAGGCAGTGTTGGTGG 60.891 60.000 0.00 0.00 0.00 4.61
93 94 0.179020 TGAAGGAGGCAGTGTTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
94 95 0.550914 TTGAAGGAGGCAGTGTTGGT 59.449 50.000 0.00 0.00 0.00 3.67
95 96 1.242076 CTTGAAGGAGGCAGTGTTGG 58.758 55.000 0.00 0.00 0.00 3.77
96 97 1.202806 TCCTTGAAGGAGGCAGTGTTG 60.203 52.381 10.46 0.00 40.06 3.33
97 98 1.140312 TCCTTGAAGGAGGCAGTGTT 58.860 50.000 10.46 0.00 40.06 3.32
98 99 0.398318 GTCCTTGAAGGAGGCAGTGT 59.602 55.000 15.46 0.00 46.90 3.55
99 100 0.322008 GGTCCTTGAAGGAGGCAGTG 60.322 60.000 15.46 0.00 46.90 3.66
100 101 0.768221 TGGTCCTTGAAGGAGGCAGT 60.768 55.000 15.46 0.00 46.90 4.40
101 102 0.322008 GTGGTCCTTGAAGGAGGCAG 60.322 60.000 15.46 0.00 46.90 4.85
102 103 1.761174 GTGGTCCTTGAAGGAGGCA 59.239 57.895 15.46 0.00 46.90 4.75
103 104 1.002011 GGTGGTCCTTGAAGGAGGC 60.002 63.158 15.46 7.56 46.90 4.70
104 105 1.296715 CGGTGGTCCTTGAAGGAGG 59.703 63.158 15.46 0.00 46.90 4.30
105 106 1.376037 GCGGTGGTCCTTGAAGGAG 60.376 63.158 15.46 3.47 46.90 3.69
106 107 2.747686 GCGGTGGTCCTTGAAGGA 59.252 61.111 10.46 10.46 43.43 3.36
107 108 2.359975 GGCGGTGGTCCTTGAAGG 60.360 66.667 4.45 4.45 36.46 3.46
108 109 2.359975 GGGCGGTGGTCCTTGAAG 60.360 66.667 0.00 0.00 34.09 3.02
130 131 3.006728 TAAGGACGTGGGCTGGGG 61.007 66.667 0.00 0.00 0.00 4.96
131 132 2.584608 CTAAGGACGTGGGCTGGG 59.415 66.667 0.00 0.00 0.00 4.45
132 133 1.838073 AACCTAAGGACGTGGGCTGG 61.838 60.000 0.00 0.00 0.00 4.85
133 134 0.673644 CAACCTAAGGACGTGGGCTG 60.674 60.000 0.00 0.00 0.00 4.85
134 135 1.677552 CAACCTAAGGACGTGGGCT 59.322 57.895 0.00 0.00 0.00 5.19
135 136 1.376812 CCAACCTAAGGACGTGGGC 60.377 63.158 0.00 0.00 0.00 5.36
136 137 1.376812 GCCAACCTAAGGACGTGGG 60.377 63.158 0.00 0.00 0.00 4.61
137 138 1.740296 CGCCAACCTAAGGACGTGG 60.740 63.158 0.00 0.00 0.00 4.94
138 139 2.388232 GCGCCAACCTAAGGACGTG 61.388 63.158 0.00 0.00 0.00 4.49
139 140 2.047560 GCGCCAACCTAAGGACGT 60.048 61.111 0.00 0.00 0.00 4.34
140 141 2.047655 TGCGCCAACCTAAGGACG 60.048 61.111 4.18 0.00 0.00 4.79
141 142 0.321298 TTCTGCGCCAACCTAAGGAC 60.321 55.000 4.18 0.00 0.00 3.85
142 143 0.036388 CTTCTGCGCCAACCTAAGGA 60.036 55.000 4.18 0.00 0.00 3.36
143 144 1.648467 GCTTCTGCGCCAACCTAAGG 61.648 60.000 4.18 0.00 0.00 2.69
144 145 0.955428 TGCTTCTGCGCCAACCTAAG 60.955 55.000 4.18 0.48 43.34 2.18
145 146 0.322456 ATGCTTCTGCGCCAACCTAA 60.322 50.000 4.18 0.00 43.34 2.69
146 147 0.322456 AATGCTTCTGCGCCAACCTA 60.322 50.000 4.18 0.00 43.34 3.08
147 148 1.604593 AATGCTTCTGCGCCAACCT 60.605 52.632 4.18 0.00 43.34 3.50
148 149 1.444895 CAATGCTTCTGCGCCAACC 60.445 57.895 4.18 0.00 43.34 3.77
149 150 1.005294 CACAATGCTTCTGCGCCAAC 61.005 55.000 4.18 0.00 43.34 3.77
150 151 1.286570 CACAATGCTTCTGCGCCAA 59.713 52.632 4.18 0.00 43.34 4.52
151 152 2.956194 CACAATGCTTCTGCGCCA 59.044 55.556 4.18 0.00 43.34 5.69
152 153 2.505557 GCACAATGCTTCTGCGCC 60.506 61.111 4.18 0.00 40.96 6.53
153 154 2.084681 GTGCACAATGCTTCTGCGC 61.085 57.895 13.17 0.00 45.31 6.09
154 155 1.794785 CGTGCACAATGCTTCTGCG 60.795 57.895 18.64 0.00 45.31 5.18
155 156 0.727122 GTCGTGCACAATGCTTCTGC 60.727 55.000 18.64 0.00 45.31 4.26
156 157 0.587768 TGTCGTGCACAATGCTTCTG 59.412 50.000 18.64 0.00 45.31 3.02
157 158 1.527034 ATGTCGTGCACAATGCTTCT 58.473 45.000 18.64 0.00 45.31 2.85
158 159 2.223112 CCTATGTCGTGCACAATGCTTC 60.223 50.000 18.64 0.00 45.31 3.86
159 160 1.739466 CCTATGTCGTGCACAATGCTT 59.261 47.619 18.64 4.40 45.31 3.91
160 161 1.066215 TCCTATGTCGTGCACAATGCT 60.066 47.619 18.64 0.00 45.31 3.79
161 162 1.368641 TCCTATGTCGTGCACAATGC 58.631 50.000 18.64 3.88 45.29 3.56
162 163 3.261580 TCTTCCTATGTCGTGCACAATG 58.738 45.455 18.64 0.04 38.97 2.82
163 164 3.610040 TCTTCCTATGTCGTGCACAAT 57.390 42.857 18.64 9.62 38.97 2.71
164 165 3.325870 CTTCTTCCTATGTCGTGCACAA 58.674 45.455 18.64 0.00 38.97 3.33
165 166 2.930887 GCTTCTTCCTATGTCGTGCACA 60.931 50.000 18.64 0.81 40.18 4.57
166 167 1.661112 GCTTCTTCCTATGTCGTGCAC 59.339 52.381 6.82 6.82 0.00 4.57
167 168 1.275010 TGCTTCTTCCTATGTCGTGCA 59.725 47.619 0.00 0.00 0.00 4.57
168 169 1.929836 CTGCTTCTTCCTATGTCGTGC 59.070 52.381 0.00 0.00 0.00 5.34
169 170 3.238108 ACTGCTTCTTCCTATGTCGTG 57.762 47.619 0.00 0.00 0.00 4.35
170 171 4.142138 CCTTACTGCTTCTTCCTATGTCGT 60.142 45.833 0.00 0.00 0.00 4.34
171 172 4.098044 TCCTTACTGCTTCTTCCTATGTCG 59.902 45.833 0.00 0.00 0.00 4.35
172 173 5.599999 TCCTTACTGCTTCTTCCTATGTC 57.400 43.478 0.00 0.00 0.00 3.06
173 174 5.663106 TGATCCTTACTGCTTCTTCCTATGT 59.337 40.000 0.00 0.00 0.00 2.29
174 175 6.166984 TGATCCTTACTGCTTCTTCCTATG 57.833 41.667 0.00 0.00 0.00 2.23
175 176 6.786959 AGATGATCCTTACTGCTTCTTCCTAT 59.213 38.462 0.00 0.00 0.00 2.57
176 177 6.041409 CAGATGATCCTTACTGCTTCTTCCTA 59.959 42.308 0.00 0.00 0.00 2.94
177 178 4.968080 AGATGATCCTTACTGCTTCTTCCT 59.032 41.667 0.00 0.00 0.00 3.36
178 179 5.055812 CAGATGATCCTTACTGCTTCTTCC 58.944 45.833 0.00 0.00 0.00 3.46
186 187 2.402305 GCTCGCAGATGATCCTTACTG 58.598 52.381 0.00 0.00 33.89 2.74
187 188 1.000827 CGCTCGCAGATGATCCTTACT 60.001 52.381 0.00 0.00 33.89 2.24
188 189 1.269309 ACGCTCGCAGATGATCCTTAC 60.269 52.381 0.00 0.00 33.89 2.34
189 190 1.001268 GACGCTCGCAGATGATCCTTA 60.001 52.381 0.00 0.00 33.89 2.69
190 191 0.249238 GACGCTCGCAGATGATCCTT 60.249 55.000 0.00 0.00 33.89 3.36
191 192 1.361993 GACGCTCGCAGATGATCCT 59.638 57.895 0.00 0.00 33.89 3.24
192 193 2.013483 CGACGCTCGCAGATGATCC 61.013 63.158 0.00 0.00 33.89 3.36
193 194 2.013483 CCGACGCTCGCAGATGATC 61.013 63.158 0.00 0.00 38.82 2.92
194 195 2.026734 CCGACGCTCGCAGATGAT 59.973 61.111 0.00 0.00 38.82 2.45
195 196 4.193334 CCCGACGCTCGCAGATGA 62.193 66.667 0.00 0.00 38.82 2.92
256 257 3.702048 TTGGAGTCGGGCTTCGGG 61.702 66.667 0.00 0.00 39.77 5.14
257 258 2.434359 GTTGGAGTCGGGCTTCGG 60.434 66.667 0.00 0.00 39.77 4.30
258 259 2.809601 CGTTGGAGTCGGGCTTCG 60.810 66.667 0.00 0.00 40.90 3.79
259 260 3.119096 GCGTTGGAGTCGGGCTTC 61.119 66.667 0.00 0.00 0.00 3.86
260 261 4.699522 GGCGTTGGAGTCGGGCTT 62.700 66.667 0.00 0.00 0.00 4.35
263 264 1.644786 GATTTGGCGTTGGAGTCGGG 61.645 60.000 0.00 0.00 0.00 5.14
264 265 0.673644 AGATTTGGCGTTGGAGTCGG 60.674 55.000 0.00 0.00 0.00 4.79
265 266 0.443869 CAGATTTGGCGTTGGAGTCG 59.556 55.000 0.00 0.00 0.00 4.18
266 267 0.804989 CCAGATTTGGCGTTGGAGTC 59.195 55.000 0.00 0.00 37.73 3.36
267 268 2.946947 CCAGATTTGGCGTTGGAGT 58.053 52.632 0.00 0.00 37.73 3.85
277 278 1.325640 CTGTCATCGTCGCCAGATTTG 59.674 52.381 0.00 0.00 0.00 2.32
278 279 1.204704 TCTGTCATCGTCGCCAGATTT 59.795 47.619 0.00 0.00 0.00 2.17
279 280 0.817654 TCTGTCATCGTCGCCAGATT 59.182 50.000 0.00 0.00 0.00 2.40
280 281 0.383590 CTCTGTCATCGTCGCCAGAT 59.616 55.000 0.00 0.00 33.77 2.90
281 282 1.657751 CCTCTGTCATCGTCGCCAGA 61.658 60.000 0.00 0.00 33.22 3.86
282 283 1.226802 CCTCTGTCATCGTCGCCAG 60.227 63.158 0.00 0.00 0.00 4.85
283 284 1.657751 CTCCTCTGTCATCGTCGCCA 61.658 60.000 0.00 0.00 0.00 5.69
284 285 1.064946 CTCCTCTGTCATCGTCGCC 59.935 63.158 0.00 0.00 0.00 5.54
285 286 1.064946 CCTCCTCTGTCATCGTCGC 59.935 63.158 0.00 0.00 0.00 5.19
286 287 0.660488 CTCCTCCTCTGTCATCGTCG 59.340 60.000 0.00 0.00 0.00 5.12
287 288 0.383949 GCTCCTCCTCTGTCATCGTC 59.616 60.000 0.00 0.00 0.00 4.20
288 289 1.040339 GGCTCCTCCTCTGTCATCGT 61.040 60.000 0.00 0.00 0.00 3.73
289 290 1.039785 TGGCTCCTCCTCTGTCATCG 61.040 60.000 0.00 0.00 35.26 3.84
290 291 0.463620 GTGGCTCCTCCTCTGTCATC 59.536 60.000 0.00 0.00 35.26 2.92
291 292 0.980231 GGTGGCTCCTCCTCTGTCAT 60.980 60.000 0.00 0.00 35.26 3.06
292 293 1.610673 GGTGGCTCCTCCTCTGTCA 60.611 63.158 0.00 0.00 35.26 3.58
293 294 2.716017 CGGTGGCTCCTCCTCTGTC 61.716 68.421 3.83 0.00 35.26 3.51
294 295 2.681778 CGGTGGCTCCTCCTCTGT 60.682 66.667 3.83 0.00 35.26 3.41
295 296 3.465403 CCGGTGGCTCCTCCTCTG 61.465 72.222 3.83 0.00 35.08 3.35
317 318 1.153823 CCTCGTAAGCCGTGTCAGG 60.154 63.158 0.00 0.00 37.94 3.86
318 319 0.456312 GACCTCGTAAGCCGTGTCAG 60.456 60.000 0.00 0.00 38.43 3.51
319 320 1.174078 TGACCTCGTAAGCCGTGTCA 61.174 55.000 0.00 0.00 42.58 3.58
320 321 0.731855 GTGACCTCGTAAGCCGTGTC 60.732 60.000 0.00 0.00 38.77 3.67
321 322 1.288127 GTGACCTCGTAAGCCGTGT 59.712 57.895 0.00 0.00 37.94 4.49
322 323 1.445582 GGTGACCTCGTAAGCCGTG 60.446 63.158 0.00 0.00 37.94 4.94
323 324 1.255667 ATGGTGACCTCGTAAGCCGT 61.256 55.000 2.11 0.00 37.94 5.68
324 325 0.527817 GATGGTGACCTCGTAAGCCG 60.528 60.000 2.11 0.00 38.13 5.52
325 326 0.535335 TGATGGTGACCTCGTAAGCC 59.465 55.000 2.11 0.00 37.18 4.35
326 327 2.271800 CTTGATGGTGACCTCGTAAGC 58.728 52.381 2.11 0.00 37.18 3.09
327 328 3.594603 ACTTGATGGTGACCTCGTAAG 57.405 47.619 2.11 5.19 0.00 2.34
328 329 6.239204 CCATATACTTGATGGTGACCTCGTAA 60.239 42.308 2.11 0.00 39.29 3.18
329 330 5.243060 CCATATACTTGATGGTGACCTCGTA 59.757 44.000 2.11 0.00 39.29 3.43
330 331 4.039245 CCATATACTTGATGGTGACCTCGT 59.961 45.833 2.11 0.00 39.29 4.18
331 332 4.560128 CCATATACTTGATGGTGACCTCG 58.440 47.826 2.11 0.00 39.29 4.63
340 341 9.561069 AAAACCTAAGCTACCATATACTTGATG 57.439 33.333 0.00 0.00 0.00 3.07
342 343 9.609346 GAAAAACCTAAGCTACCATATACTTGA 57.391 33.333 0.00 0.00 0.00 3.02
343 344 9.614792 AGAAAAACCTAAGCTACCATATACTTG 57.385 33.333 0.00 0.00 0.00 3.16
348 349 9.628500 CCTTAAGAAAAACCTAAGCTACCATAT 57.372 33.333 3.36 0.00 0.00 1.78
349 350 8.608598 ACCTTAAGAAAAACCTAAGCTACCATA 58.391 33.333 3.36 0.00 0.00 2.74
350 351 7.467650 ACCTTAAGAAAAACCTAAGCTACCAT 58.532 34.615 3.36 0.00 0.00 3.55
351 352 6.844829 ACCTTAAGAAAAACCTAAGCTACCA 58.155 36.000 3.36 0.00 0.00 3.25
352 353 7.756395 AACCTTAAGAAAAACCTAAGCTACC 57.244 36.000 3.36 0.00 0.00 3.18
360 361 7.703621 GCGAACTAAAAACCTTAAGAAAAACCT 59.296 33.333 3.36 0.00 0.00 3.50
361 362 7.703621 AGCGAACTAAAAACCTTAAGAAAAACC 59.296 33.333 3.36 0.00 0.00 3.27
362 363 8.529102 CAGCGAACTAAAAACCTTAAGAAAAAC 58.471 33.333 3.36 0.00 0.00 2.43
363 364 8.460428 TCAGCGAACTAAAAACCTTAAGAAAAA 58.540 29.630 3.36 0.00 0.00 1.94
364 365 7.987649 TCAGCGAACTAAAAACCTTAAGAAAA 58.012 30.769 3.36 0.00 0.00 2.29
365 366 7.556733 TCAGCGAACTAAAAACCTTAAGAAA 57.443 32.000 3.36 0.00 0.00 2.52
366 367 7.556733 TTCAGCGAACTAAAAACCTTAAGAA 57.443 32.000 3.36 0.00 0.00 2.52
367 368 7.739498 ATTCAGCGAACTAAAAACCTTAAGA 57.261 32.000 3.36 0.00 0.00 2.10
368 369 9.887406 TTTATTCAGCGAACTAAAAACCTTAAG 57.113 29.630 0.00 0.00 0.00 1.85
376 377 9.910511 GACGATATTTTATTCAGCGAACTAAAA 57.089 29.630 0.00 13.59 0.00 1.52
377 378 8.545420 GGACGATATTTTATTCAGCGAACTAAA 58.455 33.333 0.00 0.00 0.00 1.85
378 379 7.096353 CGGACGATATTTTATTCAGCGAACTAA 60.096 37.037 0.00 0.00 0.00 2.24
379 380 6.361481 CGGACGATATTTTATTCAGCGAACTA 59.639 38.462 0.00 0.00 0.00 2.24
380 381 5.175126 CGGACGATATTTTATTCAGCGAACT 59.825 40.000 0.00 0.00 0.00 3.01
381 382 5.363517 CGGACGATATTTTATTCAGCGAAC 58.636 41.667 0.00 0.00 0.00 3.95
382 383 4.446385 CCGGACGATATTTTATTCAGCGAA 59.554 41.667 0.00 0.00 0.00 4.70
383 384 3.985279 CCGGACGATATTTTATTCAGCGA 59.015 43.478 0.00 0.00 0.00 4.93
384 385 3.739300 ACCGGACGATATTTTATTCAGCG 59.261 43.478 9.46 0.00 0.00 5.18
385 386 5.668558 AACCGGACGATATTTTATTCAGC 57.331 39.130 9.46 0.00 0.00 4.26
386 387 9.594038 CATAAAACCGGACGATATTTTATTCAG 57.406 33.333 9.46 0.00 35.87 3.02
387 388 9.327628 TCATAAAACCGGACGATATTTTATTCA 57.672 29.630 9.46 0.00 35.87 2.57
392 393 9.863845 ATTTTTCATAAAACCGGACGATATTTT 57.136 25.926 9.46 5.90 36.15 1.82
393 394 9.863845 AATTTTTCATAAAACCGGACGATATTT 57.136 25.926 9.46 0.00 36.15 1.40
397 398 8.132995 GGATAATTTTTCATAAAACCGGACGAT 58.867 33.333 9.46 0.00 36.15 3.73
398 399 7.337436 AGGATAATTTTTCATAAAACCGGACGA 59.663 33.333 9.46 0.00 36.15 4.20
399 400 7.477494 AGGATAATTTTTCATAAAACCGGACG 58.523 34.615 9.46 0.00 36.15 4.79
437 438 6.314784 GGATTTTGACATAACCAGAACGAAG 58.685 40.000 0.00 0.00 0.00 3.79
438 439 5.106869 CGGATTTTGACATAACCAGAACGAA 60.107 40.000 0.00 0.00 0.00 3.85
439 440 4.390603 CGGATTTTGACATAACCAGAACGA 59.609 41.667 0.00 0.00 0.00 3.85
440 441 4.647964 CGGATTTTGACATAACCAGAACG 58.352 43.478 0.00 0.00 0.00 3.95
441 442 4.412207 GCGGATTTTGACATAACCAGAAC 58.588 43.478 0.00 0.00 0.00 3.01
442 443 3.442273 GGCGGATTTTGACATAACCAGAA 59.558 43.478 0.00 0.00 0.00 3.02
443 444 3.013921 GGCGGATTTTGACATAACCAGA 58.986 45.455 0.00 0.00 0.00 3.86
444 445 3.016736 AGGCGGATTTTGACATAACCAG 58.983 45.455 0.00 0.00 0.00 4.00
445 446 2.752354 CAGGCGGATTTTGACATAACCA 59.248 45.455 0.00 0.00 0.00 3.67
446 447 2.479560 GCAGGCGGATTTTGACATAACC 60.480 50.000 0.00 0.00 0.00 2.85
447 448 2.423538 AGCAGGCGGATTTTGACATAAC 59.576 45.455 0.00 0.00 0.00 1.89
448 449 2.722094 AGCAGGCGGATTTTGACATAA 58.278 42.857 0.00 0.00 0.00 1.90
449 450 2.418368 AGCAGGCGGATTTTGACATA 57.582 45.000 0.00 0.00 0.00 2.29
450 451 1.549203 AAGCAGGCGGATTTTGACAT 58.451 45.000 0.00 0.00 0.00 3.06
451 452 1.000385 CAAAGCAGGCGGATTTTGACA 60.000 47.619 0.00 0.00 31.52 3.58
452 453 1.000274 ACAAAGCAGGCGGATTTTGAC 60.000 47.619 17.02 0.00 31.52 3.18
453 454 1.327303 ACAAAGCAGGCGGATTTTGA 58.673 45.000 17.02 0.00 31.52 2.69
454 455 2.595386 GTACAAAGCAGGCGGATTTTG 58.405 47.619 0.00 5.92 31.52 2.44
455 456 1.199097 CGTACAAAGCAGGCGGATTTT 59.801 47.619 0.00 0.00 31.52 1.82
456 457 0.802494 CGTACAAAGCAGGCGGATTT 59.198 50.000 0.00 0.00 34.95 2.17
457 458 0.036765 TCGTACAAAGCAGGCGGATT 60.037 50.000 0.00 0.00 0.00 3.01
458 459 0.036765 TTCGTACAAAGCAGGCGGAT 60.037 50.000 0.00 0.00 0.00 4.18
459 460 0.036765 ATTCGTACAAAGCAGGCGGA 60.037 50.000 0.00 0.00 0.00 5.54
460 461 0.802494 AATTCGTACAAAGCAGGCGG 59.198 50.000 0.00 0.00 0.00 6.13
461 462 2.413796 TGTAATTCGTACAAAGCAGGCG 59.586 45.455 0.00 0.00 39.85 5.52
462 463 4.616181 ATGTAATTCGTACAAAGCAGGC 57.384 40.909 0.00 0.00 45.81 4.85
463 464 6.537301 TCCTAATGTAATTCGTACAAAGCAGG 59.463 38.462 0.00 0.00 45.81 4.85
464 465 7.534085 TCCTAATGTAATTCGTACAAAGCAG 57.466 36.000 0.00 0.00 45.81 4.24
465 466 9.602568 TTATCCTAATGTAATTCGTACAAAGCA 57.397 29.630 0.00 0.00 45.81 3.91
497 498 9.618890 ACTGTCTGCATACATTTCAATAACTAT 57.381 29.630 5.27 0.00 0.00 2.12
498 499 8.882736 CACTGTCTGCATACATTTCAATAACTA 58.117 33.333 5.27 0.00 0.00 2.24
499 500 7.607607 TCACTGTCTGCATACATTTCAATAACT 59.392 33.333 5.27 0.00 0.00 2.24
500 501 7.693951 GTCACTGTCTGCATACATTTCAATAAC 59.306 37.037 5.27 0.00 0.00 1.89
501 502 7.412891 CGTCACTGTCTGCATACATTTCAATAA 60.413 37.037 5.27 0.00 0.00 1.40
502 503 6.035975 CGTCACTGTCTGCATACATTTCAATA 59.964 38.462 5.27 0.00 0.00 1.90
503 504 5.163824 CGTCACTGTCTGCATACATTTCAAT 60.164 40.000 5.27 0.00 0.00 2.57
504 505 4.152223 CGTCACTGTCTGCATACATTTCAA 59.848 41.667 5.27 0.00 0.00 2.69
505 506 3.679502 CGTCACTGTCTGCATACATTTCA 59.320 43.478 5.27 0.00 0.00 2.69
506 507 3.062639 CCGTCACTGTCTGCATACATTTC 59.937 47.826 5.27 0.00 0.00 2.17
507 508 3.002791 CCGTCACTGTCTGCATACATTT 58.997 45.455 5.27 0.00 0.00 2.32
508 509 2.028112 ACCGTCACTGTCTGCATACATT 60.028 45.455 5.27 0.00 0.00 2.71
509 510 1.550524 ACCGTCACTGTCTGCATACAT 59.449 47.619 5.27 0.00 0.00 2.29
510 511 0.966179 ACCGTCACTGTCTGCATACA 59.034 50.000 4.71 4.71 0.00 2.29
511 512 1.202582 AGACCGTCACTGTCTGCATAC 59.797 52.381 0.30 0.00 41.40 2.39
512 513 1.472878 GAGACCGTCACTGTCTGCATA 59.527 52.381 6.60 0.00 42.94 3.14
513 514 0.244994 GAGACCGTCACTGTCTGCAT 59.755 55.000 6.60 0.00 42.94 3.96
514 515 1.660355 GAGACCGTCACTGTCTGCA 59.340 57.895 6.60 0.00 42.94 4.41
515 516 1.080434 GGAGACCGTCACTGTCTGC 60.080 63.158 6.60 5.83 42.94 4.26
516 517 1.210413 CGGAGACCGTCACTGTCTG 59.790 63.158 6.60 0.00 42.94 3.51
517 518 1.972223 CCGGAGACCGTCACTGTCT 60.972 63.158 0.76 0.76 46.80 3.41
518 519 0.957395 TACCGGAGACCGTCACTGTC 60.957 60.000 9.46 0.00 46.80 3.51
519 520 0.538057 TTACCGGAGACCGTCACTGT 60.538 55.000 9.46 2.48 46.80 3.55
520 521 0.109412 GTTACCGGAGACCGTCACTG 60.109 60.000 9.46 0.00 46.80 3.66
521 522 0.538057 TGTTACCGGAGACCGTCACT 60.538 55.000 9.46 0.00 46.80 3.41
522 523 0.314935 TTGTTACCGGAGACCGTCAC 59.685 55.000 9.46 0.00 46.80 3.67
523 524 1.067425 CATTGTTACCGGAGACCGTCA 60.067 52.381 9.46 0.00 46.80 4.35
524 525 1.067354 ACATTGTTACCGGAGACCGTC 60.067 52.381 9.46 0.00 46.80 4.79
525 526 0.971386 ACATTGTTACCGGAGACCGT 59.029 50.000 9.46 0.89 46.80 4.83
527 528 1.276989 TGGACATTGTTACCGGAGACC 59.723 52.381 9.46 0.00 0.00 3.85
528 529 2.754946 TGGACATTGTTACCGGAGAC 57.245 50.000 9.46 6.75 0.00 3.36
529 530 3.770388 TGTATGGACATTGTTACCGGAGA 59.230 43.478 9.46 0.00 0.00 3.71
530 531 4.131649 TGTATGGACATTGTTACCGGAG 57.868 45.455 9.46 0.00 0.00 4.63
531 532 4.764050 ATGTATGGACATTGTTACCGGA 57.236 40.909 9.46 0.00 44.18 5.14
546 547 1.538204 CGGACCGAGGACCAATGTATG 60.538 57.143 8.64 0.00 0.00 2.39
547 548 0.750850 CGGACCGAGGACCAATGTAT 59.249 55.000 8.64 0.00 0.00 2.29
548 549 0.612732 ACGGACCGAGGACCAATGTA 60.613 55.000 23.38 0.00 0.00 2.29
549 550 1.911766 ACGGACCGAGGACCAATGT 60.912 57.895 23.38 0.00 0.00 2.71
550 551 1.447838 CACGGACCGAGGACCAATG 60.448 63.158 23.38 1.06 0.00 2.82
551 552 2.656069 CCACGGACCGAGGACCAAT 61.656 63.158 24.42 0.00 39.84 3.16
552 553 3.307906 CCACGGACCGAGGACCAA 61.308 66.667 24.42 0.00 39.84 3.67
553 554 4.289101 TCCACGGACCGAGGACCA 62.289 66.667 26.79 7.52 41.21 4.02
565 566 4.789075 ATTCCGCGTCCGTCCACG 62.789 66.667 4.92 0.00 42.95 4.94
566 567 2.030958 AAATTCCGCGTCCGTCCAC 61.031 57.895 4.92 0.00 0.00 4.02
567 568 2.030401 CAAATTCCGCGTCCGTCCA 61.030 57.895 4.92 0.00 0.00 4.02
568 569 2.782615 CAAATTCCGCGTCCGTCC 59.217 61.111 4.92 0.00 0.00 4.79
569 570 2.097728 GCAAATTCCGCGTCCGTC 59.902 61.111 4.92 0.00 0.00 4.79
576 577 4.829518 GGCGACCGCAAATTCCGC 62.830 66.667 16.47 0.00 44.11 5.54
577 578 4.514569 CGGCGACCGCAAATTCCG 62.515 66.667 16.47 5.50 41.17 4.30
587 588 1.447140 TACATCTGCAACGGCGACC 60.447 57.895 16.62 1.01 45.35 4.79
588 589 0.736325 AGTACATCTGCAACGGCGAC 60.736 55.000 16.62 2.68 45.35 5.19
589 590 0.812549 TAGTACATCTGCAACGGCGA 59.187 50.000 16.62 0.00 45.35 5.54
590 591 1.852942 ATAGTACATCTGCAACGGCG 58.147 50.000 4.80 4.80 45.35 6.46
591 592 4.809426 ACTTAATAGTACATCTGCAACGGC 59.191 41.667 0.00 0.00 34.72 5.68
592 593 8.082852 AGATACTTAATAGTACATCTGCAACGG 58.917 37.037 0.00 0.00 39.59 4.44
593 594 8.906693 CAGATACTTAATAGTACATCTGCAACG 58.093 37.037 0.00 0.00 39.12 4.10
594 595 9.751542 ACAGATACTTAATAGTACATCTGCAAC 57.248 33.333 12.86 0.00 44.30 4.17
595 596 9.750125 CACAGATACTTAATAGTACATCTGCAA 57.250 33.333 12.86 0.00 44.30 4.08
596 597 8.914011 ACACAGATACTTAATAGTACATCTGCA 58.086 33.333 12.86 0.00 44.30 4.41
597 598 9.751542 AACACAGATACTTAATAGTACATCTGC 57.248 33.333 12.86 0.00 44.30 4.26
609 610 9.577110 CGATGGTAGTAAAACACAGATACTTAA 57.423 33.333 0.00 0.00 32.44 1.85
610 611 8.742777 ACGATGGTAGTAAAACACAGATACTTA 58.257 33.333 0.00 0.00 32.44 2.24
611 612 7.609056 ACGATGGTAGTAAAACACAGATACTT 58.391 34.615 0.00 0.00 32.44 2.24
612 613 7.166691 ACGATGGTAGTAAAACACAGATACT 57.833 36.000 0.00 0.00 34.45 2.12
613 614 6.195983 CGACGATGGTAGTAAAACACAGATAC 59.804 42.308 0.00 0.00 0.00 2.24
619 620 2.346545 GCCGACGATGGTAGTAAAACAC 59.653 50.000 0.00 0.00 0.00 3.32
626 627 2.478890 CGAGGCCGACGATGGTAGT 61.479 63.158 17.85 0.00 38.22 2.73
627 628 2.184830 TCGAGGCCGACGATGGTAG 61.185 63.158 20.48 0.00 40.30 3.18
647 648 2.482864 CATGGCATGCATCTGTACGTA 58.517 47.619 21.36 0.00 0.00 3.57
655 656 1.977056 TTCTCTCCATGGCATGCATC 58.023 50.000 22.02 3.15 0.00 3.91
716 717 1.446099 CATGTACGACAGTGGCGCT 60.446 57.895 20.72 8.57 0.00 5.92
730 731 3.582148 CACATCTGGCGTGCATGT 58.418 55.556 7.93 0.00 0.00 3.21
752 753 4.025858 GAGGCTGCTCTGGCACCA 62.026 66.667 0.00 0.00 44.28 4.17
802 817 3.208383 TGCACAGGTGTTGCCGTG 61.208 61.111 0.91 0.00 43.70 4.94
803 818 3.209097 GTGCACAGGTGTTGCCGT 61.209 61.111 13.17 0.00 43.70 5.68
909 928 3.793144 GGCAAGAGCGCTTCCACG 61.793 66.667 13.26 0.00 43.41 4.94
929 948 0.679002 ATGCTACCAGGCTGCTTGTG 60.679 55.000 9.56 5.03 0.00 3.33
934 953 1.071385 ACAGATATGCTACCAGGCTGC 59.929 52.381 9.56 0.00 0.00 5.25
964 983 1.944024 TGGTGTTTGGTTGACACGATC 59.056 47.619 0.00 0.00 46.38 3.69
1238 1773 1.758440 TTCTCTGTGACCGCCTTGCT 61.758 55.000 0.00 0.00 0.00 3.91
1253 1791 7.136119 CGATCAGATGGTTAAGAGTACTTCTC 58.864 42.308 0.00 0.00 43.05 2.87
1293 1839 2.264794 CTCACCCCTACACGCACC 59.735 66.667 0.00 0.00 0.00 5.01
1632 2178 3.134458 GTTCAGTGGTGTTGAAGGAGAG 58.866 50.000 0.00 0.00 35.39 3.20
1639 2185 5.487433 CCATACATAGTTCAGTGGTGTTGA 58.513 41.667 0.00 0.00 0.00 3.18
1642 2188 3.678806 CGCCATACATAGTTCAGTGGTGT 60.679 47.826 0.00 0.00 33.70 4.16
1643 2189 2.866156 CGCCATACATAGTTCAGTGGTG 59.134 50.000 0.00 0.00 0.00 4.17
1651 2197 3.181479 ACACGTCATCGCCATACATAGTT 60.181 43.478 0.00 0.00 41.18 2.24
1665 2217 6.183360 CGCAAATAAAGTAAGAGACACGTCAT 60.183 38.462 0.00 0.00 0.00 3.06
1680 2233 6.237755 GCTACTACCAGTACACGCAAATAAAG 60.238 42.308 0.00 0.00 0.00 1.85
1687 2240 0.813184 GGCTACTACCAGTACACGCA 59.187 55.000 0.00 0.00 0.00 5.24
1697 2250 4.037684 ACACGATACAGATTGGCTACTACC 59.962 45.833 0.00 0.00 0.00 3.18
1866 2496 7.582719 TGTCCCTGCCAGTCTTAAAAATATAT 58.417 34.615 0.00 0.00 0.00 0.86
1869 2499 5.249780 TGTCCCTGCCAGTCTTAAAAATA 57.750 39.130 0.00 0.00 0.00 1.40
2080 2712 3.948719 GGACGGGGTCAACAGCCA 61.949 66.667 0.00 0.00 42.66 4.75
2447 3150 9.363763 CTAGCACACATCTATATTATTCACCAG 57.636 37.037 0.00 0.00 0.00 4.00
2479 3182 7.116805 GTGAAAATTACTGAATCCTTGGCAAAG 59.883 37.037 0.00 0.00 0.00 2.77
2544 3248 0.179189 CGCGCATCCCTTGAAACTTC 60.179 55.000 8.75 0.00 0.00 3.01
2545 3249 1.875963 CGCGCATCCCTTGAAACTT 59.124 52.632 8.75 0.00 0.00 2.66
2554 3258 1.154413 CATTATTCGCGCGCATCCC 60.154 57.895 32.61 0.27 0.00 3.85
2556 3260 0.232046 TGACATTATTCGCGCGCATC 59.768 50.000 32.61 9.18 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.