Multiple sequence alignment - TraesCS7D01G185400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G185400 chr7D 100.000 3206 0 0 1 3206 138339126 138335921 0.000000e+00 5921.0
1 TraesCS7D01G185400 chr7D 89.740 2310 143 50 944 3206 138312297 138310035 0.000000e+00 2867.0
2 TraesCS7D01G185400 chr7D 90.265 113 11 0 518 630 60016061 60015949 7.170000e-32 148.0
3 TraesCS7D01G185400 chr7D 98.592 71 1 0 3136 3206 138328784 138328714 3.360000e-25 126.0
4 TraesCS7D01G185400 chr7A 95.643 2456 73 14 776 3206 138352130 138349684 0.000000e+00 3912.0
5 TraesCS7D01G185400 chr7A 84.810 395 56 4 60 451 138352562 138352169 8.340000e-106 394.0
6 TraesCS7D01G185400 chr7B 95.371 1469 40 12 893 2341 103619530 103618070 0.000000e+00 2311.0
7 TraesCS7D01G185400 chr7B 75.241 1038 229 23 1148 2174 123655696 123656716 4.840000e-128 468.0
8 TraesCS7D01G185400 chr7B 91.892 111 8 1 520 630 479491230 479491339 1.540000e-33 154.0
9 TraesCS7D01G185400 chr7B 90.991 111 9 1 521 630 186278119 186278229 7.170000e-32 148.0
10 TraesCS7D01G185400 chr7B 88.525 61 7 0 633 693 652145309 652145369 1.230000e-09 75.0
11 TraesCS7D01G185400 chr6D 76.043 1031 226 19 1148 2169 8397031 8396013 1.710000e-142 516.0
12 TraesCS7D01G185400 chr6D 75.506 1037 234 18 1148 2174 14689124 14688098 1.030000e-134 490.0
13 TraesCS7D01G185400 chr6D 73.812 989 238 16 1196 2174 34017623 34018600 3.910000e-99 372.0
14 TraesCS7D01G185400 chr6D 75.839 745 170 9 1435 2174 14518057 14518796 1.400000e-98 370.0
15 TraesCS7D01G185400 chr6B 75.545 1055 232 24 1148 2188 15234730 15233688 2.220000e-136 496.0
16 TraesCS7D01G185400 chr6B 74.324 1036 226 24 1148 2174 16267512 16268516 1.390000e-108 403.0
17 TraesCS7D01G185400 chr6B 72.668 611 167 0 1562 2172 15298987 15298377 1.510000e-48 204.0
18 TraesCS7D01G185400 chr6B 91.803 61 5 0 633 693 32667680 32667740 5.700000e-13 86.1
19 TraesCS7D01G185400 chr6A 75.626 1038 231 20 1148 2174 15873062 15872036 2.220000e-136 496.0
20 TraesCS7D01G185400 chr6A 75.607 1029 230 18 1148 2166 15914019 15913002 1.030000e-134 490.0
21 TraesCS7D01G185400 chr6A 74.249 932 217 20 1220 2134 15899886 15898961 1.400000e-98 370.0
22 TraesCS7D01G185400 chr6A 88.525 61 7 0 633 693 68510756 68510816 1.230000e-09 75.0
23 TraesCS7D01G185400 chr6A 87.500 64 8 0 630 693 593358283 593358346 1.230000e-09 75.0
24 TraesCS7D01G185400 chr2D 78.897 417 56 17 17 415 643294318 643293916 1.480000e-63 254.0
25 TraesCS7D01G185400 chr2D 76.758 327 46 15 17 326 53546111 53545798 4.280000e-34 156.0
26 TraesCS7D01G185400 chr2D 90.741 108 10 0 521 628 595395089 595394982 9.270000e-31 145.0
27 TraesCS7D01G185400 chr5B 73.754 682 162 12 1502 2172 621235516 621234841 5.310000e-63 252.0
28 TraesCS7D01G185400 chr4B 90.909 110 10 0 521 630 373258727 373258618 7.170000e-32 148.0
29 TraesCS7D01G185400 chr3B 90.909 110 10 0 521 630 31124989 31124880 7.170000e-32 148.0
30 TraesCS7D01G185400 chr5D 90.654 107 10 0 521 627 521863990 521864096 3.330000e-30 143.0
31 TraesCS7D01G185400 chr5D 86.047 129 14 4 506 630 428237820 428237948 5.580000e-28 135.0
32 TraesCS7D01G185400 chr4D 90.000 110 11 0 521 630 148545214 148545323 3.330000e-30 143.0
33 TraesCS7D01G185400 chr1B 84.348 115 14 3 2062 2174 662059465 662059577 3.380000e-20 110.0
34 TraesCS7D01G185400 chr1B 90.769 65 6 0 632 696 564924706 564924642 1.580000e-13 87.9
35 TraesCS7D01G185400 chr2B 89.062 64 7 0 633 696 233183462 233183525 2.650000e-11 80.5
36 TraesCS7D01G185400 chr2A 91.379 58 5 0 634 691 672947348 672947291 2.650000e-11 80.5
37 TraesCS7D01G185400 chr5A 91.228 57 5 0 635 691 608059354 608059410 9.540000e-11 78.7
38 TraesCS7D01G185400 chr4A 88.525 61 7 0 633 693 626055734 626055794 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G185400 chr7D 138335921 138339126 3205 True 5921 5921 100.0000 1 3206 1 chr7D.!!$R4 3205
1 TraesCS7D01G185400 chr7D 138310035 138312297 2262 True 2867 2867 89.7400 944 3206 1 chr7D.!!$R2 2262
2 TraesCS7D01G185400 chr7A 138349684 138352562 2878 True 2153 3912 90.2265 60 3206 2 chr7A.!!$R1 3146
3 TraesCS7D01G185400 chr7B 103618070 103619530 1460 True 2311 2311 95.3710 893 2341 1 chr7B.!!$R1 1448
4 TraesCS7D01G185400 chr7B 123655696 123656716 1020 False 468 468 75.2410 1148 2174 1 chr7B.!!$F1 1026
5 TraesCS7D01G185400 chr6D 8396013 8397031 1018 True 516 516 76.0430 1148 2169 1 chr6D.!!$R1 1021
6 TraesCS7D01G185400 chr6D 14688098 14689124 1026 True 490 490 75.5060 1148 2174 1 chr6D.!!$R2 1026
7 TraesCS7D01G185400 chr6D 34017623 34018600 977 False 372 372 73.8120 1196 2174 1 chr6D.!!$F2 978
8 TraesCS7D01G185400 chr6D 14518057 14518796 739 False 370 370 75.8390 1435 2174 1 chr6D.!!$F1 739
9 TraesCS7D01G185400 chr6B 15233688 15234730 1042 True 496 496 75.5450 1148 2188 1 chr6B.!!$R1 1040
10 TraesCS7D01G185400 chr6B 16267512 16268516 1004 False 403 403 74.3240 1148 2174 1 chr6B.!!$F1 1026
11 TraesCS7D01G185400 chr6B 15298377 15298987 610 True 204 204 72.6680 1562 2172 1 chr6B.!!$R2 610
12 TraesCS7D01G185400 chr6A 15872036 15873062 1026 True 496 496 75.6260 1148 2174 1 chr6A.!!$R1 1026
13 TraesCS7D01G185400 chr6A 15913002 15914019 1017 True 490 490 75.6070 1148 2166 1 chr6A.!!$R3 1018
14 TraesCS7D01G185400 chr6A 15898961 15899886 925 True 370 370 74.2490 1220 2134 1 chr6A.!!$R2 914
15 TraesCS7D01G185400 chr5B 621234841 621235516 675 True 252 252 73.7540 1502 2172 1 chr5B.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 780 0.031449 CCAACCGTTGGTTCGCATTT 59.969 50.0 20.55 0.0 43.05 2.32 F
785 787 0.317436 TTGGTTCGCATTTGCACGTC 60.317 50.0 3.13 0.0 42.21 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1882 1.079543 CTGGGAGTTCCTCAGCACG 60.080 63.158 0.0 0.0 36.20 5.34 R
2442 2491 2.223572 GCCAGGTTCAGAAACTTGTGTG 60.224 50.000 0.0 0.0 40.01 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.510906 CCCCCTAAGGCCGTGATG 59.489 66.667 0.00 0.00 0.00 3.07
34 35 2.510906 CCCCTAAGGCCGTGATGG 59.489 66.667 0.00 0.73 42.50 3.51
35 36 2.070039 CCCCTAAGGCCGTGATGGA 61.070 63.158 0.00 0.00 42.00 3.41
36 37 1.447643 CCCTAAGGCCGTGATGGAG 59.552 63.158 0.00 0.00 42.00 3.86
37 38 1.227674 CCTAAGGCCGTGATGGAGC 60.228 63.158 0.00 0.00 42.00 4.70
38 39 1.522092 CTAAGGCCGTGATGGAGCA 59.478 57.895 0.00 0.00 42.00 4.26
39 40 0.811616 CTAAGGCCGTGATGGAGCAC 60.812 60.000 0.00 0.00 42.00 4.40
40 41 1.549243 TAAGGCCGTGATGGAGCACA 61.549 55.000 0.00 0.00 42.00 4.57
41 42 2.124570 GGCCGTGATGGAGCACAT 60.125 61.111 0.00 0.00 44.18 3.21
42 43 2.475466 GGCCGTGATGGAGCACATG 61.475 63.158 0.00 0.00 40.72 3.21
43 44 1.746615 GCCGTGATGGAGCACATGT 60.747 57.895 0.00 0.00 40.72 3.21
44 45 0.461870 GCCGTGATGGAGCACATGTA 60.462 55.000 0.00 0.00 40.72 2.29
45 46 1.575244 CCGTGATGGAGCACATGTAG 58.425 55.000 0.00 0.00 40.72 2.74
46 47 1.134699 CCGTGATGGAGCACATGTAGT 60.135 52.381 0.00 0.00 40.72 2.73
47 48 3.310142 CCGTGATGGAGCACATGTAGTG 61.310 54.545 0.00 0.00 46.21 2.74
48 49 5.785639 CCGTGATGGAGCACATGTAGTGT 62.786 52.174 0.00 0.00 45.56 3.55
55 56 3.812577 CACATGTAGTGTCGCCTCA 57.187 52.632 0.00 0.00 43.40 3.86
56 57 1.633561 CACATGTAGTGTCGCCTCAG 58.366 55.000 0.00 0.00 43.40 3.35
57 58 0.532573 ACATGTAGTGTCGCCTCAGG 59.467 55.000 0.00 0.00 35.77 3.86
58 59 0.179100 CATGTAGTGTCGCCTCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
68 69 4.113815 CCTCAGGGCCGCATTGGA 62.114 66.667 0.00 0.00 42.00 3.53
69 70 2.515523 CTCAGGGCCGCATTGGAG 60.516 66.667 0.00 0.00 42.00 3.86
70 71 3.329889 TCAGGGCCGCATTGGAGT 61.330 61.111 0.00 0.00 42.00 3.85
71 72 1.971505 CTCAGGGCCGCATTGGAGTA 61.972 60.000 0.00 0.00 42.00 2.59
72 73 1.524621 CAGGGCCGCATTGGAGTAG 60.525 63.158 0.00 0.00 42.00 2.57
78 79 0.824109 CCGCATTGGAGTAGAGGACA 59.176 55.000 0.00 0.00 42.00 4.02
83 84 3.813443 CATTGGAGTAGAGGACAATGGG 58.187 50.000 8.03 0.00 43.81 4.00
95 96 1.304282 CAATGGGTCAGGGTGGAGG 59.696 63.158 0.00 0.00 0.00 4.30
102 103 2.930019 CAGGGTGGAGGGCTGTCA 60.930 66.667 0.00 0.00 0.00 3.58
106 107 4.394712 GTGGAGGGCTGTCACGGG 62.395 72.222 0.00 0.00 0.00 5.28
113 114 4.394712 GCTGTCACGGGACTGGGG 62.395 72.222 23.89 10.71 44.61 4.96
118 119 2.603473 CACGGGACTGGGGAGTGA 60.603 66.667 0.00 0.00 35.03 3.41
130 131 3.775654 GAGTGAGGTGGGGAGGCG 61.776 72.222 0.00 0.00 0.00 5.52
143 144 1.375326 GAGGCGTGGGGAGAAACTT 59.625 57.895 0.00 0.00 0.00 2.66
179 180 0.536006 CCAATCCGAAGATGGGGAGC 60.536 60.000 0.00 0.00 39.69 4.70
192 193 4.699522 GGAGCGGTGTGGGTGGAC 62.700 72.222 0.00 0.00 0.00 4.02
210 211 1.244019 ACGATGAGCTTGGTTTGGGC 61.244 55.000 0.00 0.00 0.00 5.36
214 215 0.685785 TGAGCTTGGTTTGGGCAACA 60.686 50.000 0.00 0.00 37.07 3.33
216 217 0.687427 AGCTTGGTTTGGGCAACACT 60.687 50.000 0.00 0.00 37.07 3.55
217 218 0.249447 GCTTGGTTTGGGCAACACTC 60.249 55.000 0.00 0.00 37.07 3.51
229 230 2.487265 GGCAACACTCCAAGGAAAGAGA 60.487 50.000 0.00 0.00 34.13 3.10
231 232 3.808728 CAACACTCCAAGGAAAGAGACA 58.191 45.455 0.00 0.00 34.13 3.41
234 235 2.802816 CACTCCAAGGAAAGAGACAACG 59.197 50.000 0.00 0.00 34.13 4.10
235 236 2.698797 ACTCCAAGGAAAGAGACAACGA 59.301 45.455 0.00 0.00 34.13 3.85
238 239 2.417719 CAAGGAAAGAGACAACGAGGG 58.582 52.381 0.00 0.00 0.00 4.30
244 245 1.249407 AGAGACAACGAGGGAGTGAC 58.751 55.000 0.00 0.00 0.00 3.67
249 250 2.420722 GACAACGAGGGAGTGACTAGAG 59.579 54.545 0.00 0.00 0.00 2.43
252 253 0.466555 CGAGGGAGTGACTAGAGGGG 60.467 65.000 0.00 0.00 0.00 4.79
261 262 5.360649 AGTGACTAGAGGGGAAAATTAGC 57.639 43.478 0.00 0.00 0.00 3.09
264 265 4.164221 TGACTAGAGGGGAAAATTAGCAGG 59.836 45.833 0.00 0.00 0.00 4.85
265 266 3.459969 ACTAGAGGGGAAAATTAGCAGGG 59.540 47.826 0.00 0.00 0.00 4.45
270 271 2.379005 GGGAAAATTAGCAGGGTCTGG 58.621 52.381 0.00 0.00 31.21 3.86
271 272 2.379005 GGAAAATTAGCAGGGTCTGGG 58.621 52.381 0.00 0.00 31.21 4.45
273 274 0.394352 AAATTAGCAGGGTCTGGGCG 60.394 55.000 0.00 0.00 31.21 6.13
278 279 1.223487 GCAGGGTCTGGGCGATTTA 59.777 57.895 0.00 0.00 31.21 1.40
291 292 6.325545 TCTGGGCGATTTACTTCCTTATTCTA 59.674 38.462 0.00 0.00 0.00 2.10
335 337 4.252971 ACCGGATTAGATTATGTGACCG 57.747 45.455 9.46 0.00 39.02 4.79
349 351 2.560981 TGTGACCGTGAGATTCTGCTAA 59.439 45.455 0.00 0.00 0.00 3.09
372 374 0.594284 CGACGGCTTTCGATAGGTCC 60.594 60.000 5.00 0.00 41.78 4.46
374 376 1.033746 ACGGCTTTCGATAGGTCCGA 61.034 55.000 21.95 0.00 42.43 4.55
377 379 1.605712 GGCTTTCGATAGGTCCGATGG 60.606 57.143 5.00 0.00 35.84 3.51
382 384 1.679680 TCGATAGGTCCGATGGTTCAC 59.320 52.381 0.00 0.00 0.00 3.18
396 398 5.869344 CGATGGTTCACTTCTGATCAAACTA 59.131 40.000 0.00 0.00 0.00 2.24
411 413 3.201266 TCAAACTACTTGGTGGGAGTGTT 59.799 43.478 0.00 0.00 35.56 3.32
429 431 3.747529 GTGTTTCCCATTCATTTGGCAAG 59.252 43.478 0.00 0.00 35.29 4.01
432 434 2.189676 TCCCATTCATTTGGCAAGCAT 58.810 42.857 0.00 0.00 35.29 3.79
443 445 1.273048 TGGCAAGCATGACAATTCCAC 59.727 47.619 0.00 0.00 43.21 4.02
448 450 1.612950 AGCATGACAATTCCACGCAAA 59.387 42.857 0.00 0.00 0.00 3.68
451 453 3.120923 GCATGACAATTCCACGCAAAAAG 60.121 43.478 0.00 0.00 0.00 2.27
452 454 2.468831 TGACAATTCCACGCAAAAAGC 58.531 42.857 0.00 0.00 40.87 3.51
454 456 2.472488 GACAATTCCACGCAAAAAGCTG 59.528 45.455 0.00 0.00 42.61 4.24
455 457 2.100584 ACAATTCCACGCAAAAAGCTGA 59.899 40.909 0.00 0.00 42.61 4.26
456 458 3.122297 CAATTCCACGCAAAAAGCTGAA 58.878 40.909 0.00 0.00 42.61 3.02
458 460 3.451141 TTCCACGCAAAAAGCTGAAAT 57.549 38.095 0.00 0.00 42.61 2.17
460 462 2.360483 TCCACGCAAAAAGCTGAAATCA 59.640 40.909 0.00 0.00 42.61 2.57
461 463 3.005684 TCCACGCAAAAAGCTGAAATCAT 59.994 39.130 0.00 0.00 42.61 2.45
462 464 3.742369 CCACGCAAAAAGCTGAAATCATT 59.258 39.130 0.00 0.00 42.61 2.57
463 465 4.211794 CCACGCAAAAAGCTGAAATCATTT 59.788 37.500 0.00 0.00 42.61 2.32
464 466 5.277442 CCACGCAAAAAGCTGAAATCATTTT 60.277 36.000 0.00 0.00 42.61 1.82
465 467 6.193761 CACGCAAAAAGCTGAAATCATTTTT 58.806 32.000 0.00 2.99 42.61 1.94
466 468 6.355144 CACGCAAAAAGCTGAAATCATTTTTC 59.645 34.615 0.00 0.00 42.61 2.29
467 469 6.036953 ACGCAAAAAGCTGAAATCATTTTTCA 59.963 30.769 0.00 1.30 42.61 2.69
468 470 7.073265 CGCAAAAAGCTGAAATCATTTTTCAT 58.927 30.769 1.61 0.00 42.61 2.57
469 471 7.059033 CGCAAAAAGCTGAAATCATTTTTCATG 59.941 33.333 1.61 0.00 42.61 3.07
470 472 7.325097 GCAAAAAGCTGAAATCATTTTTCATGG 59.675 33.333 1.61 0.00 41.15 3.66
471 473 6.490566 AAAGCTGAAATCATTTTTCATGGC 57.509 33.333 1.61 3.47 37.72 4.40
472 474 5.155278 AGCTGAAATCATTTTTCATGGCA 57.845 34.783 12.09 0.00 37.72 4.92
473 475 5.553123 AGCTGAAATCATTTTTCATGGCAA 58.447 33.333 12.09 0.00 37.72 4.52
474 476 6.177610 AGCTGAAATCATTTTTCATGGCAAT 58.822 32.000 12.09 0.00 37.72 3.56
475 477 6.657541 AGCTGAAATCATTTTTCATGGCAATT 59.342 30.769 12.09 0.00 37.72 2.32
476 478 7.175990 AGCTGAAATCATTTTTCATGGCAATTT 59.824 29.630 12.09 0.00 37.72 1.82
477 479 7.810759 GCTGAAATCATTTTTCATGGCAATTTT 59.189 29.630 0.00 0.00 37.72 1.82
478 480 9.685828 CTGAAATCATTTTTCATGGCAATTTTT 57.314 25.926 0.00 0.00 37.72 1.94
545 547 5.646467 TTTAACACAGTACAGACGAAAGC 57.354 39.130 0.00 0.00 0.00 3.51
546 548 1.767289 ACACAGTACAGACGAAAGCG 58.233 50.000 0.00 0.00 44.79 4.68
547 549 0.435008 CACAGTACAGACGAAAGCGC 59.565 55.000 0.00 0.00 42.48 5.92
548 550 0.314302 ACAGTACAGACGAAAGCGCT 59.686 50.000 2.64 2.64 42.48 5.92
549 551 0.985549 CAGTACAGACGAAAGCGCTC 59.014 55.000 12.06 0.00 42.48 5.03
550 552 0.596577 AGTACAGACGAAAGCGCTCA 59.403 50.000 12.06 0.00 42.48 4.26
551 553 1.202582 AGTACAGACGAAAGCGCTCAT 59.797 47.619 12.06 1.84 42.48 2.90
552 554 2.422479 AGTACAGACGAAAGCGCTCATA 59.578 45.455 12.06 0.00 42.48 2.15
553 555 2.586258 ACAGACGAAAGCGCTCATAT 57.414 45.000 12.06 0.00 42.48 1.78
554 556 3.710326 ACAGACGAAAGCGCTCATATA 57.290 42.857 12.06 0.00 42.48 0.86
555 557 4.244425 ACAGACGAAAGCGCTCATATAT 57.756 40.909 12.06 0.00 42.48 0.86
556 558 5.372547 ACAGACGAAAGCGCTCATATATA 57.627 39.130 12.06 0.00 42.48 0.86
557 559 5.154932 ACAGACGAAAGCGCTCATATATAC 58.845 41.667 12.06 0.00 42.48 1.47
558 560 4.260886 CAGACGAAAGCGCTCATATATACG 59.739 45.833 12.06 10.29 42.48 3.06
566 568 3.359654 CGCTCATATATACGCGCATACA 58.640 45.455 5.73 0.00 39.11 2.29
567 569 3.177838 CGCTCATATATACGCGCATACAC 59.822 47.826 5.73 0.00 39.11 2.90
568 570 4.352039 GCTCATATATACGCGCATACACT 58.648 43.478 5.73 0.00 0.00 3.55
569 571 4.438145 GCTCATATATACGCGCATACACTC 59.562 45.833 5.73 0.00 0.00 3.51
570 572 4.584394 TCATATATACGCGCATACACTCG 58.416 43.478 5.73 0.00 0.00 4.18
571 573 1.614385 ATATACGCGCATACACTCGC 58.386 50.000 5.73 0.00 46.98 5.03
575 577 4.530857 GCGCATACACTCGCCCCT 62.531 66.667 0.30 0.00 45.01 4.79
576 578 3.125607 CGCATACACTCGCCCCTA 58.874 61.111 0.00 0.00 0.00 3.53
577 579 1.666011 CGCATACACTCGCCCCTAT 59.334 57.895 0.00 0.00 0.00 2.57
578 580 0.667487 CGCATACACTCGCCCCTATG 60.667 60.000 0.00 0.00 0.00 2.23
579 581 0.679505 GCATACACTCGCCCCTATGA 59.320 55.000 0.00 0.00 0.00 2.15
580 582 1.070134 GCATACACTCGCCCCTATGAA 59.930 52.381 0.00 0.00 0.00 2.57
581 583 2.289694 GCATACACTCGCCCCTATGAAT 60.290 50.000 0.00 0.00 0.00 2.57
582 584 3.329386 CATACACTCGCCCCTATGAATG 58.671 50.000 0.00 0.00 0.00 2.67
583 585 0.179045 ACACTCGCCCCTATGAATGC 60.179 55.000 0.00 0.00 0.00 3.56
584 586 0.179048 CACTCGCCCCTATGAATGCA 60.179 55.000 0.00 0.00 0.00 3.96
585 587 0.179045 ACTCGCCCCTATGAATGCAC 60.179 55.000 0.00 0.00 0.00 4.57
586 588 0.179048 CTCGCCCCTATGAATGCACA 60.179 55.000 0.00 0.00 0.00 4.57
587 589 0.463654 TCGCCCCTATGAATGCACAC 60.464 55.000 0.00 0.00 0.00 3.82
588 590 0.747644 CGCCCCTATGAATGCACACA 60.748 55.000 0.00 0.00 0.00 3.72
589 591 0.740737 GCCCCTATGAATGCACACAC 59.259 55.000 0.00 0.00 0.00 3.82
590 592 1.016627 CCCCTATGAATGCACACACG 58.983 55.000 0.00 0.00 0.00 4.49
591 593 0.378257 CCCTATGAATGCACACACGC 59.622 55.000 0.00 0.00 0.00 5.34
593 595 1.202065 CCTATGAATGCACACACGCAC 60.202 52.381 0.00 0.00 46.56 5.34
594 596 1.464219 CTATGAATGCACACACGCACA 59.536 47.619 0.00 0.00 46.56 4.57
595 597 0.040157 ATGAATGCACACACGCACAC 60.040 50.000 0.00 0.00 46.56 3.82
596 598 1.094650 TGAATGCACACACGCACACT 61.095 50.000 0.00 0.00 46.56 3.55
597 599 0.384725 GAATGCACACACGCACACTC 60.385 55.000 0.00 0.00 46.56 3.51
598 600 0.815213 AATGCACACACGCACACTCT 60.815 50.000 0.00 0.00 46.56 3.24
599 601 0.033366 ATGCACACACGCACACTCTA 59.967 50.000 0.00 0.00 46.56 2.43
600 602 0.033366 TGCACACACGCACACTCTAT 59.967 50.000 0.00 0.00 36.86 1.98
601 603 0.716108 GCACACACGCACACTCTATC 59.284 55.000 0.00 0.00 0.00 2.08
602 604 1.350193 CACACACGCACACTCTATCC 58.650 55.000 0.00 0.00 0.00 2.59
603 605 0.246635 ACACACGCACACTCTATCCC 59.753 55.000 0.00 0.00 0.00 3.85
604 606 0.532573 CACACGCACACTCTATCCCT 59.467 55.000 0.00 0.00 0.00 4.20
605 607 1.749063 CACACGCACACTCTATCCCTA 59.251 52.381 0.00 0.00 0.00 3.53
606 608 2.362397 CACACGCACACTCTATCCCTAT 59.638 50.000 0.00 0.00 0.00 2.57
607 609 2.362397 ACACGCACACTCTATCCCTATG 59.638 50.000 0.00 0.00 0.00 2.23
608 610 2.362397 CACGCACACTCTATCCCTATGT 59.638 50.000 0.00 0.00 0.00 2.29
609 611 2.362397 ACGCACACTCTATCCCTATGTG 59.638 50.000 0.00 0.00 42.83 3.21
612 614 3.987547 CACACTCTATCCCTATGTGCAG 58.012 50.000 0.00 0.00 34.76 4.41
613 615 3.638627 CACACTCTATCCCTATGTGCAGA 59.361 47.826 0.00 0.00 34.76 4.26
614 616 4.282957 CACACTCTATCCCTATGTGCAGAT 59.717 45.833 0.53 0.53 34.76 2.90
615 617 4.904251 ACACTCTATCCCTATGTGCAGATT 59.096 41.667 0.00 0.00 32.49 2.40
616 618 5.011533 ACACTCTATCCCTATGTGCAGATTC 59.988 44.000 0.00 0.00 32.49 2.52
617 619 4.219507 ACTCTATCCCTATGTGCAGATTCG 59.780 45.833 0.00 0.00 0.00 3.34
618 620 4.407365 TCTATCCCTATGTGCAGATTCGA 58.593 43.478 0.00 0.00 0.00 3.71
619 621 4.832823 TCTATCCCTATGTGCAGATTCGAA 59.167 41.667 0.00 0.00 0.00 3.71
620 622 3.904800 TCCCTATGTGCAGATTCGAAA 57.095 42.857 0.00 0.00 0.00 3.46
621 623 3.797039 TCCCTATGTGCAGATTCGAAAG 58.203 45.455 0.00 0.00 0.00 2.62
622 624 3.450817 TCCCTATGTGCAGATTCGAAAGA 59.549 43.478 0.00 0.00 39.20 2.52
623 625 3.557595 CCCTATGTGCAGATTCGAAAGAC 59.442 47.826 0.00 0.00 41.84 3.01
624 626 4.437239 CCTATGTGCAGATTCGAAAGACT 58.563 43.478 0.00 0.00 41.84 3.24
625 627 4.269603 CCTATGTGCAGATTCGAAAGACTG 59.730 45.833 19.04 19.04 41.84 3.51
626 628 3.385193 TGTGCAGATTCGAAAGACTGA 57.615 42.857 24.15 12.63 41.84 3.41
627 629 3.320626 TGTGCAGATTCGAAAGACTGAG 58.679 45.455 24.15 8.18 41.84 3.35
628 630 2.093467 GTGCAGATTCGAAAGACTGAGC 59.907 50.000 24.15 15.09 41.84 4.26
629 631 1.663135 GCAGATTCGAAAGACTGAGCC 59.337 52.381 24.15 10.47 41.84 4.70
630 632 2.932622 GCAGATTCGAAAGACTGAGCCA 60.933 50.000 24.15 0.00 41.84 4.75
631 633 3.529533 CAGATTCGAAAGACTGAGCCAT 58.470 45.455 18.76 0.00 41.84 4.40
632 634 3.309138 CAGATTCGAAAGACTGAGCCATG 59.691 47.826 18.76 0.00 41.84 3.66
633 635 3.196469 AGATTCGAAAGACTGAGCCATGA 59.804 43.478 0.00 0.00 41.84 3.07
634 636 3.401033 TTCGAAAGACTGAGCCATGAA 57.599 42.857 0.00 0.00 41.84 2.57
635 637 2.688507 TCGAAAGACTGAGCCATGAAC 58.311 47.619 0.00 0.00 33.31 3.18
636 638 1.391485 CGAAAGACTGAGCCATGAACG 59.609 52.381 0.00 0.00 0.00 3.95
637 639 2.417719 GAAAGACTGAGCCATGAACGT 58.582 47.619 0.00 0.00 0.00 3.99
638 640 2.086054 AAGACTGAGCCATGAACGTC 57.914 50.000 0.00 0.00 0.00 4.34
639 641 1.261480 AGACTGAGCCATGAACGTCT 58.739 50.000 0.00 0.00 0.00 4.18
640 642 1.203523 AGACTGAGCCATGAACGTCTC 59.796 52.381 0.00 0.00 0.00 3.36
641 643 0.247736 ACTGAGCCATGAACGTCTCC 59.752 55.000 0.00 0.00 0.00 3.71
642 644 0.534412 CTGAGCCATGAACGTCTCCT 59.466 55.000 0.00 0.00 0.00 3.69
643 645 0.532573 TGAGCCATGAACGTCTCCTC 59.467 55.000 0.00 0.00 0.00 3.71
644 646 0.532573 GAGCCATGAACGTCTCCTCA 59.467 55.000 0.00 0.00 0.00 3.86
645 647 0.247736 AGCCATGAACGTCTCCTCAC 59.752 55.000 0.00 0.00 0.00 3.51
646 648 0.037326 GCCATGAACGTCTCCTCACA 60.037 55.000 0.00 0.00 0.00 3.58
647 649 1.714794 CCATGAACGTCTCCTCACAC 58.285 55.000 0.00 0.00 0.00 3.82
648 650 1.673033 CCATGAACGTCTCCTCACACC 60.673 57.143 0.00 0.00 0.00 4.16
649 651 1.000843 CATGAACGTCTCCTCACACCA 59.999 52.381 0.00 0.00 0.00 4.17
650 652 1.116308 TGAACGTCTCCTCACACCAA 58.884 50.000 0.00 0.00 0.00 3.67
651 653 1.483004 TGAACGTCTCCTCACACCAAA 59.517 47.619 0.00 0.00 0.00 3.28
652 654 2.093394 TGAACGTCTCCTCACACCAAAA 60.093 45.455 0.00 0.00 0.00 2.44
653 655 2.240493 ACGTCTCCTCACACCAAAAG 57.760 50.000 0.00 0.00 0.00 2.27
654 656 0.868406 CGTCTCCTCACACCAAAAGC 59.132 55.000 0.00 0.00 0.00 3.51
655 657 1.810031 CGTCTCCTCACACCAAAAGCA 60.810 52.381 0.00 0.00 0.00 3.91
656 658 1.604278 GTCTCCTCACACCAAAAGCAC 59.396 52.381 0.00 0.00 0.00 4.40
657 659 1.211703 TCTCCTCACACCAAAAGCACA 59.788 47.619 0.00 0.00 0.00 4.57
658 660 2.158623 TCTCCTCACACCAAAAGCACAT 60.159 45.455 0.00 0.00 0.00 3.21
659 661 2.227388 CTCCTCACACCAAAAGCACATC 59.773 50.000 0.00 0.00 0.00 3.06
660 662 1.069022 CCTCACACCAAAAGCACATCG 60.069 52.381 0.00 0.00 0.00 3.84
661 663 0.310543 TCACACCAAAAGCACATCGC 59.689 50.000 0.00 0.00 42.91 4.58
674 676 4.355543 GCACATCGCTGAAAATCCTAAA 57.644 40.909 0.00 0.00 37.77 1.85
675 677 4.732784 GCACATCGCTGAAAATCCTAAAA 58.267 39.130 0.00 0.00 37.77 1.52
676 678 5.343249 GCACATCGCTGAAAATCCTAAAAT 58.657 37.500 0.00 0.00 37.77 1.82
677 679 6.494842 GCACATCGCTGAAAATCCTAAAATA 58.505 36.000 0.00 0.00 37.77 1.40
678 680 6.972328 GCACATCGCTGAAAATCCTAAAATAA 59.028 34.615 0.00 0.00 37.77 1.40
679 681 7.487829 GCACATCGCTGAAAATCCTAAAATAAA 59.512 33.333 0.00 0.00 37.77 1.40
680 682 9.520204 CACATCGCTGAAAATCCTAAAATAAAT 57.480 29.630 0.00 0.00 0.00 1.40
684 686 9.787532 TCGCTGAAAATCCTAAAATAAATTCAG 57.212 29.630 7.60 7.60 43.20 3.02
685 687 9.787532 CGCTGAAAATCCTAAAATAAATTCAGA 57.212 29.630 14.38 0.00 43.08 3.27
707 709 9.720667 TCAGAAATAATGTGAAAATAATGCGAG 57.279 29.630 0.00 0.00 0.00 5.03
708 710 9.507280 CAGAAATAATGTGAAAATAATGCGAGT 57.493 29.630 0.00 0.00 0.00 4.18
715 717 9.853555 AATGTGAAAATAATGCGAGTATCAAAA 57.146 25.926 0.00 0.00 33.17 2.44
716 718 8.667987 TGTGAAAATAATGCGAGTATCAAAAC 57.332 30.769 0.00 0.00 33.17 2.43
717 719 8.511321 TGTGAAAATAATGCGAGTATCAAAACT 58.489 29.630 0.00 0.00 33.17 2.66
718 720 9.341899 GTGAAAATAATGCGAGTATCAAAACTT 57.658 29.630 0.00 0.00 33.17 2.66
723 725 9.783256 AATAATGCGAGTATCAAAACTTAAACC 57.217 29.630 0.00 0.00 33.17 3.27
724 726 5.616488 TGCGAGTATCAAAACTTAAACCC 57.384 39.130 0.00 0.00 33.17 4.11
725 727 5.310451 TGCGAGTATCAAAACTTAAACCCT 58.690 37.500 0.00 0.00 33.17 4.34
726 728 5.180492 TGCGAGTATCAAAACTTAAACCCTG 59.820 40.000 0.00 0.00 33.17 4.45
727 729 5.391629 GCGAGTATCAAAACTTAAACCCTGG 60.392 44.000 0.00 0.00 33.17 4.45
728 730 5.704053 CGAGTATCAAAACTTAAACCCTGGT 59.296 40.000 0.00 0.00 33.17 4.00
729 731 6.348213 CGAGTATCAAAACTTAAACCCTGGTG 60.348 42.308 0.00 0.00 33.17 4.17
730 732 5.773176 AGTATCAAAACTTAAACCCTGGTGG 59.227 40.000 0.00 0.00 41.37 4.61
731 733 8.393469 GAGTATCAAAACTTAAACCCTGGTGGT 61.393 40.741 0.00 0.00 42.91 4.16
739 741 4.438158 CCCTGGTGGTGGGGATAT 57.562 61.111 0.00 0.00 45.18 1.63
740 742 2.155065 CCCTGGTGGTGGGGATATC 58.845 63.158 0.00 0.00 45.18 1.63
741 743 0.697511 CCCTGGTGGTGGGGATATCA 60.698 60.000 4.83 0.00 45.18 2.15
742 744 0.474184 CCTGGTGGTGGGGATATCAC 59.526 60.000 4.83 0.00 34.61 3.06
743 745 1.511613 CTGGTGGTGGGGATATCACT 58.488 55.000 4.65 0.00 35.61 3.41
744 746 1.141657 CTGGTGGTGGGGATATCACTG 59.858 57.143 4.65 0.00 35.61 3.66
745 747 1.213296 GGTGGTGGGGATATCACTGT 58.787 55.000 4.65 0.00 35.61 3.55
746 748 1.141053 GGTGGTGGGGATATCACTGTC 59.859 57.143 4.65 0.00 35.61 3.51
747 749 2.119495 GTGGTGGGGATATCACTGTCT 58.881 52.381 4.65 0.00 35.61 3.41
748 750 2.505819 GTGGTGGGGATATCACTGTCTT 59.494 50.000 4.65 0.00 35.61 3.01
749 751 3.054361 GTGGTGGGGATATCACTGTCTTT 60.054 47.826 4.65 0.00 35.61 2.52
750 752 3.199946 TGGTGGGGATATCACTGTCTTTC 59.800 47.826 4.65 0.00 35.61 2.62
751 753 3.456277 GGTGGGGATATCACTGTCTTTCT 59.544 47.826 4.65 0.00 35.61 2.52
752 754 4.654262 GGTGGGGATATCACTGTCTTTCTA 59.346 45.833 4.65 0.00 35.61 2.10
753 755 5.130477 GGTGGGGATATCACTGTCTTTCTAA 59.870 44.000 4.65 0.00 35.61 2.10
754 756 6.183361 GGTGGGGATATCACTGTCTTTCTAAT 60.183 42.308 4.65 0.00 35.61 1.73
755 757 6.931840 GTGGGGATATCACTGTCTTTCTAATC 59.068 42.308 4.65 0.00 32.78 1.75
756 758 6.615316 TGGGGATATCACTGTCTTTCTAATCA 59.385 38.462 4.65 0.00 0.00 2.57
757 759 7.127186 TGGGGATATCACTGTCTTTCTAATCAA 59.873 37.037 4.65 0.00 0.00 2.57
758 760 8.160106 GGGGATATCACTGTCTTTCTAATCAAT 58.840 37.037 4.65 0.00 0.00 2.57
759 761 9.213799 GGGATATCACTGTCTTTCTAATCAATC 57.786 37.037 4.83 0.00 0.00 2.67
760 762 9.213799 GGATATCACTGTCTTTCTAATCAATCC 57.786 37.037 4.83 0.00 0.00 3.01
761 763 9.770097 GATATCACTGTCTTTCTAATCAATCCA 57.230 33.333 0.00 0.00 0.00 3.41
763 765 7.672983 TCACTGTCTTTCTAATCAATCCAAC 57.327 36.000 0.00 0.00 0.00 3.77
764 766 6.655003 TCACTGTCTTTCTAATCAATCCAACC 59.345 38.462 0.00 0.00 0.00 3.77
765 767 5.643777 ACTGTCTTTCTAATCAATCCAACCG 59.356 40.000 0.00 0.00 0.00 4.44
766 768 5.556915 TGTCTTTCTAATCAATCCAACCGT 58.443 37.500 0.00 0.00 0.00 4.83
767 769 6.001460 TGTCTTTCTAATCAATCCAACCGTT 58.999 36.000 0.00 0.00 0.00 4.44
768 770 6.072728 TGTCTTTCTAATCAATCCAACCGTTG 60.073 38.462 4.12 4.12 0.00 4.10
776 778 3.350377 CCAACCGTTGGTTCGCAT 58.650 55.556 20.55 0.00 43.05 4.73
777 779 1.657556 CCAACCGTTGGTTCGCATT 59.342 52.632 20.55 0.00 43.05 3.56
778 780 0.031449 CCAACCGTTGGTTCGCATTT 59.969 50.000 20.55 0.00 43.05 2.32
779 781 1.127701 CAACCGTTGGTTCGCATTTG 58.872 50.000 3.10 0.00 43.05 2.32
780 782 0.596341 AACCGTTGGTTCGCATTTGC 60.596 50.000 0.00 0.00 43.05 3.68
781 783 1.007964 CCGTTGGTTCGCATTTGCA 60.008 52.632 3.13 0.00 42.21 4.08
785 787 0.317436 TTGGTTCGCATTTGCACGTC 60.317 50.000 3.13 0.00 42.21 4.34
800 802 1.647213 CACGTCCGATTTGTCACGTAG 59.353 52.381 0.00 0.00 43.39 3.51
801 803 1.536766 ACGTCCGATTTGTCACGTAGA 59.463 47.619 0.00 0.00 43.42 2.59
862 864 4.063529 CCAGAAAACTGGCGCTCA 57.936 55.556 7.64 2.39 37.72 4.26
865 867 1.069090 AGAAAACTGGCGCTCACGA 59.931 52.632 7.64 0.00 43.93 4.35
1015 1026 1.153005 GCCATGCTTCTCCTCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
1039 1050 0.531974 CGTCCTCCTCCTCTCTCTCG 60.532 65.000 0.00 0.00 0.00 4.04
1851 1882 3.119096 GTCGCCAAGCTTCCGGTC 61.119 66.667 14.06 6.38 0.00 4.79
2105 2142 2.233922 AGTTCATACGTCCTCACAAGGG 59.766 50.000 0.00 0.00 43.56 3.95
2174 2211 5.859495 GGAAGTCCCCACTAGATTTAGATG 58.141 45.833 0.00 0.00 30.14 2.90
2338 2382 4.836125 AGTATGTCACTTGCAGTTTTGG 57.164 40.909 0.00 0.00 31.59 3.28
2442 2491 6.925610 TGGTTCTTCATATGTCATGCTAAC 57.074 37.500 1.90 0.18 0.00 2.34
2477 2526 0.535780 CCTGGCTTGTTCAGTCTGCA 60.536 55.000 0.00 0.00 0.00 4.41
2539 2588 3.119602 TCTCAGTTGGGACGTTAGAATCG 60.120 47.826 0.00 0.00 0.00 3.34
2597 2647 6.899393 AACTCTTGTGGAATTCTGCATTAA 57.101 33.333 5.23 0.00 0.00 1.40
2607 2657 5.876460 GGAATTCTGCATTAAAAACATGCCT 59.124 36.000 5.23 0.00 45.59 4.75
2695 2761 1.541147 CCACACGATTTTGTGCATCCT 59.459 47.619 0.00 0.00 44.79 3.24
2954 3021 1.662026 GCTTTACACGCCAACTTTCCG 60.662 52.381 0.00 0.00 0.00 4.30
2976 3043 4.561105 GTCTGTAGCTAGGTATGGATTGC 58.439 47.826 4.71 0.00 0.00 3.56
3086 3170 5.120363 GCTTGGCTAACTTAGTTCAGTACAC 59.880 44.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.510906 CATCACGGCCTTAGGGGG 59.489 66.667 0.00 0.00 35.12 5.40
17 18 2.044806 CTCCATCACGGCCTTAGGGG 62.045 65.000 0.00 0.00 38.36 4.79
18 19 1.447643 CTCCATCACGGCCTTAGGG 59.552 63.158 0.00 0.00 33.14 3.53
19 20 1.227674 GCTCCATCACGGCCTTAGG 60.228 63.158 0.00 0.00 33.14 2.69
20 21 0.811616 GTGCTCCATCACGGCCTTAG 60.812 60.000 0.00 0.00 33.14 2.18
21 22 1.220749 GTGCTCCATCACGGCCTTA 59.779 57.895 0.00 0.00 33.14 2.69
22 23 2.045926 GTGCTCCATCACGGCCTT 60.046 61.111 0.00 0.00 33.14 4.35
23 24 2.673200 ATGTGCTCCATCACGGCCT 61.673 57.895 0.00 0.00 39.73 5.19
24 25 2.124570 ATGTGCTCCATCACGGCC 60.125 61.111 0.00 0.00 39.73 6.13
25 26 0.461870 TACATGTGCTCCATCACGGC 60.462 55.000 9.11 0.00 39.73 5.68
26 27 1.134699 ACTACATGTGCTCCATCACGG 60.135 52.381 9.11 0.00 39.73 4.94
27 28 1.929169 CACTACATGTGCTCCATCACG 59.071 52.381 9.11 0.00 40.06 4.35
39 40 0.179100 CCCTGAGGCGACACTACATG 60.179 60.000 0.00 0.00 0.00 3.21
40 41 2.202866 CCCTGAGGCGACACTACAT 58.797 57.895 0.00 0.00 0.00 2.29
41 42 3.694746 CCCTGAGGCGACACTACA 58.305 61.111 0.00 0.00 0.00 2.74
51 52 4.113815 TCCAATGCGGCCCTGAGG 62.114 66.667 0.00 0.00 33.14 3.86
52 53 1.971505 TACTCCAATGCGGCCCTGAG 61.972 60.000 0.00 1.00 33.14 3.35
53 54 1.971505 CTACTCCAATGCGGCCCTGA 61.972 60.000 0.00 0.00 33.14 3.86
54 55 1.524621 CTACTCCAATGCGGCCCTG 60.525 63.158 0.00 0.00 33.14 4.45
55 56 1.689233 TCTACTCCAATGCGGCCCT 60.689 57.895 0.00 0.00 33.14 5.19
56 57 1.227674 CTCTACTCCAATGCGGCCC 60.228 63.158 0.00 0.00 33.14 5.80
57 58 1.227674 CCTCTACTCCAATGCGGCC 60.228 63.158 0.00 0.00 33.14 6.13
58 59 0.530870 GTCCTCTACTCCAATGCGGC 60.531 60.000 0.00 0.00 33.14 6.53
59 60 0.824109 TGTCCTCTACTCCAATGCGG 59.176 55.000 0.00 0.00 0.00 5.69
60 61 2.672961 TTGTCCTCTACTCCAATGCG 57.327 50.000 0.00 0.00 0.00 4.73
61 62 3.209410 CCATTGTCCTCTACTCCAATGC 58.791 50.000 0.00 0.00 41.64 3.56
62 63 3.200825 ACCCATTGTCCTCTACTCCAATG 59.799 47.826 0.00 0.00 42.28 2.82
63 64 3.456277 GACCCATTGTCCTCTACTCCAAT 59.544 47.826 0.00 0.00 38.09 3.16
64 65 2.838202 GACCCATTGTCCTCTACTCCAA 59.162 50.000 0.00 0.00 38.09 3.53
65 66 2.225522 TGACCCATTGTCCTCTACTCCA 60.226 50.000 0.00 0.00 43.78 3.86
66 67 2.432510 CTGACCCATTGTCCTCTACTCC 59.567 54.545 0.00 0.00 43.78 3.85
67 68 2.432510 CCTGACCCATTGTCCTCTACTC 59.567 54.545 0.00 0.00 43.78 2.59
68 69 2.472029 CCTGACCCATTGTCCTCTACT 58.528 52.381 0.00 0.00 43.78 2.57
69 70 1.486726 CCCTGACCCATTGTCCTCTAC 59.513 57.143 0.00 0.00 43.78 2.59
70 71 1.080498 ACCCTGACCCATTGTCCTCTA 59.920 52.381 0.00 0.00 43.78 2.43
71 72 0.178861 ACCCTGACCCATTGTCCTCT 60.179 55.000 0.00 0.00 43.78 3.69
72 73 0.035056 CACCCTGACCCATTGTCCTC 60.035 60.000 0.00 0.00 43.78 3.71
78 79 1.930656 CCCTCCACCCTGACCCATT 60.931 63.158 0.00 0.00 0.00 3.16
83 84 2.930562 ACAGCCCTCCACCCTGAC 60.931 66.667 0.00 0.00 0.00 3.51
90 91 4.631740 TCCCGTGACAGCCCTCCA 62.632 66.667 0.00 0.00 0.00 3.86
95 96 4.394712 CCCAGTCCCGTGACAGCC 62.395 72.222 0.00 0.00 44.33 4.85
97 98 2.603473 TCCCCAGTCCCGTGACAG 60.603 66.667 0.00 0.00 44.33 3.51
98 99 2.603473 CTCCCCAGTCCCGTGACA 60.603 66.667 0.00 0.00 44.33 3.58
102 103 2.283966 CTCACTCCCCAGTCCCGT 60.284 66.667 0.00 0.00 0.00 5.28
106 107 2.294078 CCCACCTCACTCCCCAGTC 61.294 68.421 0.00 0.00 0.00 3.51
113 114 3.775654 CGCCTCCCCACCTCACTC 61.776 72.222 0.00 0.00 0.00 3.51
130 131 3.068165 CCAACAAAGAAGTTTCTCCCCAC 59.932 47.826 0.00 0.00 36.28 4.61
138 139 3.365472 ACTCCAGCCAACAAAGAAGTTT 58.635 40.909 0.00 0.00 0.00 2.66
143 144 0.843309 TGGACTCCAGCCAACAAAGA 59.157 50.000 0.00 0.00 31.13 2.52
179 180 2.434185 CATCGTCCACCCACACCG 60.434 66.667 0.00 0.00 0.00 4.94
192 193 1.243342 TGCCCAAACCAAGCTCATCG 61.243 55.000 0.00 0.00 0.00 3.84
194 195 0.681175 GTTGCCCAAACCAAGCTCAT 59.319 50.000 0.00 0.00 32.13 2.90
210 211 3.808728 TGTCTCTTTCCTTGGAGTGTTG 58.191 45.455 0.00 0.00 0.00 3.33
214 215 2.698797 TCGTTGTCTCTTTCCTTGGAGT 59.301 45.455 0.00 0.00 0.00 3.85
216 217 2.037251 CCTCGTTGTCTCTTTCCTTGGA 59.963 50.000 0.00 0.00 0.00 3.53
217 218 2.417719 CCTCGTTGTCTCTTTCCTTGG 58.582 52.381 0.00 0.00 0.00 3.61
229 230 2.438411 CTCTAGTCACTCCCTCGTTGT 58.562 52.381 0.00 0.00 0.00 3.32
231 232 1.341187 CCCTCTAGTCACTCCCTCGTT 60.341 57.143 0.00 0.00 0.00 3.85
234 235 0.927767 TCCCCTCTAGTCACTCCCTC 59.072 60.000 0.00 0.00 0.00 4.30
235 236 1.394532 TTCCCCTCTAGTCACTCCCT 58.605 55.000 0.00 0.00 0.00 4.20
238 239 5.104900 TGCTAATTTTCCCCTCTAGTCACTC 60.105 44.000 0.00 0.00 0.00 3.51
244 245 3.459969 ACCCTGCTAATTTTCCCCTCTAG 59.540 47.826 0.00 0.00 0.00 2.43
249 250 2.379005 CAGACCCTGCTAATTTTCCCC 58.621 52.381 0.00 0.00 0.00 4.81
252 253 1.751351 GCCCAGACCCTGCTAATTTTC 59.249 52.381 0.00 0.00 0.00 2.29
261 262 0.541863 AGTAAATCGCCCAGACCCTG 59.458 55.000 0.00 0.00 0.00 4.45
264 265 1.209747 AGGAAGTAAATCGCCCAGACC 59.790 52.381 0.00 0.00 0.00 3.85
265 266 2.693267 AGGAAGTAAATCGCCCAGAC 57.307 50.000 0.00 0.00 0.00 3.51
309 311 4.133820 CACATAATCTAATCCGGTTGCCA 58.866 43.478 0.00 0.00 0.00 4.92
312 314 4.447724 CGGTCACATAATCTAATCCGGTTG 59.552 45.833 0.00 0.00 34.24 3.77
313 315 4.100498 ACGGTCACATAATCTAATCCGGTT 59.900 41.667 0.00 0.00 40.79 4.44
316 318 4.866921 TCACGGTCACATAATCTAATCCG 58.133 43.478 0.00 0.00 41.95 4.18
317 319 6.085555 TCTCACGGTCACATAATCTAATCC 57.914 41.667 0.00 0.00 0.00 3.01
335 337 3.971871 CGTCGATCTTAGCAGAATCTCAC 59.028 47.826 0.00 0.00 30.76 3.51
372 374 4.692625 AGTTTGATCAGAAGTGAACCATCG 59.307 41.667 0.00 0.00 35.88 3.84
374 376 6.773638 AGTAGTTTGATCAGAAGTGAACCAT 58.226 36.000 0.00 0.00 35.88 3.55
377 379 6.483640 ACCAAGTAGTTTGATCAGAAGTGAAC 59.516 38.462 0.00 0.00 39.21 3.18
382 384 4.697352 CCCACCAAGTAGTTTGATCAGAAG 59.303 45.833 0.00 0.00 39.21 2.85
396 398 3.821306 GGAAACACTCCCACCAAGT 57.179 52.632 0.00 0.00 38.44 3.16
411 413 1.976404 TGCTTGCCAAATGAATGGGAA 59.024 42.857 0.37 0.37 46.94 3.97
424 426 1.733389 CGTGGAATTGTCATGCTTGCC 60.733 52.381 0.00 0.00 0.00 4.52
429 431 2.063156 TTTGCGTGGAATTGTCATGC 57.937 45.000 12.96 12.96 44.75 4.06
432 434 2.468831 GCTTTTTGCGTGGAATTGTCA 58.531 42.857 0.00 0.00 0.00 3.58
448 450 5.998981 TGCCATGAAAAATGATTTCAGCTTT 59.001 32.000 9.22 0.00 41.13 3.51
451 453 5.866335 TTGCCATGAAAAATGATTTCAGC 57.134 34.783 9.22 8.40 41.13 4.26
452 454 9.685828 AAAAATTGCCATGAAAAATGATTTCAG 57.314 25.926 9.22 0.00 41.13 3.02
468 470 9.334947 TGAGAATGTCAATTTTAAAAATTGCCA 57.665 25.926 4.44 0.00 37.50 4.92
521 523 6.480285 GCTTTCGTCTGTACTGTGTTAAAAA 58.520 36.000 0.00 0.00 0.00 1.94
522 524 5.276489 CGCTTTCGTCTGTACTGTGTTAAAA 60.276 40.000 0.00 0.00 0.00 1.52
523 525 4.207635 CGCTTTCGTCTGTACTGTGTTAAA 59.792 41.667 0.00 0.00 0.00 1.52
524 526 3.732219 CGCTTTCGTCTGTACTGTGTTAA 59.268 43.478 0.00 0.00 0.00 2.01
525 527 3.302555 CGCTTTCGTCTGTACTGTGTTA 58.697 45.455 0.00 0.00 0.00 2.41
526 528 2.124903 CGCTTTCGTCTGTACTGTGTT 58.875 47.619 0.00 0.00 0.00 3.32
527 529 1.767289 CGCTTTCGTCTGTACTGTGT 58.233 50.000 0.00 0.00 0.00 3.72
528 530 0.435008 GCGCTTTCGTCTGTACTGTG 59.565 55.000 0.00 0.00 38.14 3.66
529 531 0.314302 AGCGCTTTCGTCTGTACTGT 59.686 50.000 2.64 0.00 38.14 3.55
530 532 0.985549 GAGCGCTTTCGTCTGTACTG 59.014 55.000 13.26 0.00 38.14 2.74
531 533 0.596577 TGAGCGCTTTCGTCTGTACT 59.403 50.000 13.26 0.00 38.14 2.73
532 534 1.630148 ATGAGCGCTTTCGTCTGTAC 58.370 50.000 13.26 0.00 38.14 2.90
533 535 3.710326 ATATGAGCGCTTTCGTCTGTA 57.290 42.857 13.26 0.00 38.14 2.74
534 536 2.586258 ATATGAGCGCTTTCGTCTGT 57.414 45.000 13.26 0.00 38.14 3.41
535 537 4.260886 CGTATATATGAGCGCTTTCGTCTG 59.739 45.833 13.26 0.00 38.14 3.51
536 538 4.404324 CGTATATATGAGCGCTTTCGTCT 58.596 43.478 13.26 0.00 38.14 4.18
537 539 3.001954 GCGTATATATGAGCGCTTTCGTC 60.002 47.826 13.26 0.00 45.48 4.20
538 540 2.915463 GCGTATATATGAGCGCTTTCGT 59.085 45.455 13.26 3.58 45.48 3.85
539 541 2.036496 CGCGTATATATGAGCGCTTTCG 60.036 50.000 13.26 5.16 46.56 3.46
540 542 3.538591 CGCGTATATATGAGCGCTTTC 57.461 47.619 13.26 0.00 46.56 2.62
546 548 4.352039 AGTGTATGCGCGTATATATGAGC 58.648 43.478 19.79 20.14 38.31 4.26
547 549 4.666618 CGAGTGTATGCGCGTATATATGAG 59.333 45.833 19.79 8.50 0.00 2.90
548 550 4.584394 CGAGTGTATGCGCGTATATATGA 58.416 43.478 19.79 0.00 0.00 2.15
549 551 3.177838 GCGAGTGTATGCGCGTATATATG 59.822 47.826 19.79 11.92 43.96 1.78
550 552 3.360533 GCGAGTGTATGCGCGTATATAT 58.639 45.455 19.79 9.03 43.96 0.86
551 553 2.777494 GCGAGTGTATGCGCGTATATA 58.223 47.619 19.79 14.59 43.96 0.86
552 554 1.614385 GCGAGTGTATGCGCGTATAT 58.386 50.000 19.79 4.31 43.96 0.86
553 555 3.081741 GCGAGTGTATGCGCGTATA 57.918 52.632 13.13 13.13 43.96 1.47
554 556 3.917870 GCGAGTGTATGCGCGTAT 58.082 55.556 15.52 15.52 43.96 3.06
559 561 0.667487 CATAGGGGCGAGTGTATGCG 60.667 60.000 0.00 0.00 0.00 4.73
560 562 0.679505 TCATAGGGGCGAGTGTATGC 59.320 55.000 0.00 0.00 0.00 3.14
561 563 3.329386 CATTCATAGGGGCGAGTGTATG 58.671 50.000 0.00 0.00 0.00 2.39
562 564 2.289694 GCATTCATAGGGGCGAGTGTAT 60.290 50.000 0.00 0.00 0.00 2.29
563 565 1.070134 GCATTCATAGGGGCGAGTGTA 59.930 52.381 0.00 0.00 0.00 2.90
564 566 0.179045 GCATTCATAGGGGCGAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
565 567 0.179048 TGCATTCATAGGGGCGAGTG 60.179 55.000 0.00 0.00 0.00 3.51
566 568 0.179045 GTGCATTCATAGGGGCGAGT 60.179 55.000 0.00 0.00 0.00 4.18
567 569 0.179048 TGTGCATTCATAGGGGCGAG 60.179 55.000 0.00 0.00 0.00 5.03
568 570 0.463654 GTGTGCATTCATAGGGGCGA 60.464 55.000 0.00 0.00 0.00 5.54
569 571 0.747644 TGTGTGCATTCATAGGGGCG 60.748 55.000 0.00 0.00 0.00 6.13
570 572 0.740737 GTGTGTGCATTCATAGGGGC 59.259 55.000 0.00 0.00 0.00 5.80
571 573 1.016627 CGTGTGTGCATTCATAGGGG 58.983 55.000 0.00 0.00 0.00 4.79
572 574 0.378257 GCGTGTGTGCATTCATAGGG 59.622 55.000 0.00 0.00 34.15 3.53
573 575 1.085893 TGCGTGTGTGCATTCATAGG 58.914 50.000 0.00 0.00 40.62 2.57
581 583 0.033366 ATAGAGTGTGCGTGTGTGCA 59.967 50.000 0.00 0.00 43.95 4.57
582 584 0.716108 GATAGAGTGTGCGTGTGTGC 59.284 55.000 0.00 0.00 0.00 4.57
583 585 1.350193 GGATAGAGTGTGCGTGTGTG 58.650 55.000 0.00 0.00 0.00 3.82
584 586 0.246635 GGGATAGAGTGTGCGTGTGT 59.753 55.000 0.00 0.00 0.00 3.72
585 587 0.532573 AGGGATAGAGTGTGCGTGTG 59.467 55.000 0.00 0.00 0.00 3.82
586 588 2.139323 TAGGGATAGAGTGTGCGTGT 57.861 50.000 0.00 0.00 0.00 4.49
587 589 2.362397 ACATAGGGATAGAGTGTGCGTG 59.638 50.000 0.00 0.00 0.00 5.34
588 590 2.362397 CACATAGGGATAGAGTGTGCGT 59.638 50.000 0.00 0.00 34.50 5.24
589 591 3.018598 CACATAGGGATAGAGTGTGCG 57.981 52.381 0.00 0.00 34.50 5.34
591 593 3.638627 TCTGCACATAGGGATAGAGTGTG 59.361 47.826 0.00 0.00 42.19 3.82
592 594 3.916035 TCTGCACATAGGGATAGAGTGT 58.084 45.455 0.00 0.00 32.99 3.55
593 595 5.477510 GAATCTGCACATAGGGATAGAGTG 58.522 45.833 0.00 0.00 0.00 3.51
594 596 4.219507 CGAATCTGCACATAGGGATAGAGT 59.780 45.833 0.00 0.00 0.00 3.24
595 597 4.460731 TCGAATCTGCACATAGGGATAGAG 59.539 45.833 0.00 0.00 0.00 2.43
596 598 4.407365 TCGAATCTGCACATAGGGATAGA 58.593 43.478 0.00 0.00 0.00 1.98
597 599 4.790765 TCGAATCTGCACATAGGGATAG 57.209 45.455 0.00 0.00 0.00 2.08
598 600 5.304357 TCTTTCGAATCTGCACATAGGGATA 59.696 40.000 0.00 0.00 0.00 2.59
599 601 4.101585 TCTTTCGAATCTGCACATAGGGAT 59.898 41.667 0.00 0.00 0.00 3.85
600 602 3.450817 TCTTTCGAATCTGCACATAGGGA 59.549 43.478 0.00 0.00 0.00 4.20
601 603 3.557595 GTCTTTCGAATCTGCACATAGGG 59.442 47.826 0.00 0.00 0.00 3.53
602 604 4.269603 CAGTCTTTCGAATCTGCACATAGG 59.730 45.833 0.00 0.00 0.00 2.57
603 605 5.105063 TCAGTCTTTCGAATCTGCACATAG 58.895 41.667 15.76 2.11 0.00 2.23
604 606 5.072040 TCAGTCTTTCGAATCTGCACATA 57.928 39.130 15.76 2.24 0.00 2.29
605 607 3.930336 TCAGTCTTTCGAATCTGCACAT 58.070 40.909 15.76 0.00 0.00 3.21
606 608 3.320626 CTCAGTCTTTCGAATCTGCACA 58.679 45.455 15.76 4.19 0.00 4.57
607 609 2.093467 GCTCAGTCTTTCGAATCTGCAC 59.907 50.000 15.76 9.48 0.00 4.57
608 610 2.341257 GCTCAGTCTTTCGAATCTGCA 58.659 47.619 15.76 0.00 0.00 4.41
609 611 1.663135 GGCTCAGTCTTTCGAATCTGC 59.337 52.381 15.76 8.78 0.00 4.26
610 612 2.964740 TGGCTCAGTCTTTCGAATCTG 58.035 47.619 14.92 14.92 0.00 2.90
611 613 3.196469 TCATGGCTCAGTCTTTCGAATCT 59.804 43.478 0.00 0.00 0.00 2.40
612 614 3.525537 TCATGGCTCAGTCTTTCGAATC 58.474 45.455 0.00 0.00 0.00 2.52
613 615 3.616956 TCATGGCTCAGTCTTTCGAAT 57.383 42.857 0.00 0.00 0.00 3.34
614 616 3.067106 GTTCATGGCTCAGTCTTTCGAA 58.933 45.455 0.00 0.00 0.00 3.71
615 617 2.688507 GTTCATGGCTCAGTCTTTCGA 58.311 47.619 0.00 0.00 0.00 3.71
616 618 1.391485 CGTTCATGGCTCAGTCTTTCG 59.609 52.381 0.00 0.00 0.00 3.46
617 619 2.413453 GACGTTCATGGCTCAGTCTTTC 59.587 50.000 0.00 0.00 0.00 2.62
618 620 2.037772 AGACGTTCATGGCTCAGTCTTT 59.962 45.455 0.00 0.00 35.70 2.52
619 621 1.620819 AGACGTTCATGGCTCAGTCTT 59.379 47.619 0.00 0.00 35.70 3.01
620 622 1.203523 GAGACGTTCATGGCTCAGTCT 59.796 52.381 0.00 8.97 41.05 3.24
621 623 1.634702 GAGACGTTCATGGCTCAGTC 58.365 55.000 0.00 0.00 0.00 3.51
622 624 0.247736 GGAGACGTTCATGGCTCAGT 59.752 55.000 4.24 0.00 0.00 3.41
623 625 0.534412 AGGAGACGTTCATGGCTCAG 59.466 55.000 4.24 0.00 0.00 3.35
624 626 0.532573 GAGGAGACGTTCATGGCTCA 59.467 55.000 4.24 0.00 0.00 4.26
625 627 0.532573 TGAGGAGACGTTCATGGCTC 59.467 55.000 0.00 0.00 0.00 4.70
626 628 0.247736 GTGAGGAGACGTTCATGGCT 59.752 55.000 0.00 0.00 0.00 4.75
627 629 0.037326 TGTGAGGAGACGTTCATGGC 60.037 55.000 0.00 0.00 0.00 4.40
628 630 1.673033 GGTGTGAGGAGACGTTCATGG 60.673 57.143 0.00 0.00 0.00 3.66
629 631 1.000843 TGGTGTGAGGAGACGTTCATG 59.999 52.381 0.00 0.00 0.00 3.07
630 632 1.338107 TGGTGTGAGGAGACGTTCAT 58.662 50.000 0.00 0.00 0.00 2.57
631 633 1.116308 TTGGTGTGAGGAGACGTTCA 58.884 50.000 0.00 0.00 0.00 3.18
632 634 2.234300 TTTGGTGTGAGGAGACGTTC 57.766 50.000 0.00 0.00 0.00 3.95
633 635 2.561569 CTTTTGGTGTGAGGAGACGTT 58.438 47.619 0.00 0.00 0.00 3.99
634 636 1.810412 GCTTTTGGTGTGAGGAGACGT 60.810 52.381 0.00 0.00 0.00 4.34
635 637 0.868406 GCTTTTGGTGTGAGGAGACG 59.132 55.000 0.00 0.00 0.00 4.18
636 638 1.604278 GTGCTTTTGGTGTGAGGAGAC 59.396 52.381 0.00 0.00 0.00 3.36
637 639 1.211703 TGTGCTTTTGGTGTGAGGAGA 59.788 47.619 0.00 0.00 0.00 3.71
638 640 1.679139 TGTGCTTTTGGTGTGAGGAG 58.321 50.000 0.00 0.00 0.00 3.69
639 641 2.229792 GATGTGCTTTTGGTGTGAGGA 58.770 47.619 0.00 0.00 0.00 3.71
640 642 1.069022 CGATGTGCTTTTGGTGTGAGG 60.069 52.381 0.00 0.00 0.00 3.86
641 643 1.664016 GCGATGTGCTTTTGGTGTGAG 60.664 52.381 0.00 0.00 41.73 3.51
642 644 0.310543 GCGATGTGCTTTTGGTGTGA 59.689 50.000 0.00 0.00 41.73 3.58
643 645 2.800096 GCGATGTGCTTTTGGTGTG 58.200 52.632 0.00 0.00 41.73 3.82
653 655 4.355543 TTTAGGATTTTCAGCGATGTGC 57.644 40.909 0.00 0.00 46.98 4.57
654 656 8.909708 TTTATTTTAGGATTTTCAGCGATGTG 57.090 30.769 0.00 0.00 0.00 3.21
658 660 9.787532 CTGAATTTATTTTAGGATTTTCAGCGA 57.212 29.630 0.00 0.00 34.40 4.93
659 661 9.787532 TCTGAATTTATTTTAGGATTTTCAGCG 57.212 29.630 0.00 0.00 38.95 5.18
681 683 9.720667 CTCGCATTATTTTCACATTATTTCTGA 57.279 29.630 0.00 0.00 0.00 3.27
682 684 9.507280 ACTCGCATTATTTTCACATTATTTCTG 57.493 29.630 0.00 0.00 0.00 3.02
689 691 9.853555 TTTTGATACTCGCATTATTTTCACATT 57.146 25.926 0.00 0.00 0.00 2.71
690 692 9.289303 GTTTTGATACTCGCATTATTTTCACAT 57.711 29.630 0.00 0.00 0.00 3.21
691 693 8.511321 AGTTTTGATACTCGCATTATTTTCACA 58.489 29.630 0.00 0.00 0.00 3.58
692 694 8.895932 AGTTTTGATACTCGCATTATTTTCAC 57.104 30.769 0.00 0.00 0.00 3.18
697 699 9.783256 GGTTTAAGTTTTGATACTCGCATTATT 57.217 29.630 0.00 0.00 0.00 1.40
698 700 8.403236 GGGTTTAAGTTTTGATACTCGCATTAT 58.597 33.333 0.00 0.00 0.00 1.28
699 701 7.608761 AGGGTTTAAGTTTTGATACTCGCATTA 59.391 33.333 0.00 0.00 0.00 1.90
700 702 6.433093 AGGGTTTAAGTTTTGATACTCGCATT 59.567 34.615 0.00 0.00 0.00 3.56
701 703 5.944007 AGGGTTTAAGTTTTGATACTCGCAT 59.056 36.000 0.00 0.00 0.00 4.73
702 704 5.180492 CAGGGTTTAAGTTTTGATACTCGCA 59.820 40.000 0.00 0.00 0.00 5.10
703 705 5.391629 CCAGGGTTTAAGTTTTGATACTCGC 60.392 44.000 0.00 0.00 0.00 5.03
704 706 5.704053 ACCAGGGTTTAAGTTTTGATACTCG 59.296 40.000 0.00 0.00 0.00 4.18
705 707 6.072119 CCACCAGGGTTTAAGTTTTGATACTC 60.072 42.308 0.00 0.00 0.00 2.59
706 708 5.773176 CCACCAGGGTTTAAGTTTTGATACT 59.227 40.000 0.00 0.00 0.00 2.12
707 709 6.020971 CCACCAGGGTTTAAGTTTTGATAC 57.979 41.667 0.00 0.00 0.00 2.24
722 724 0.697511 TGATATCCCCACCACCAGGG 60.698 60.000 0.00 0.00 46.36 4.45
723 725 0.474184 GTGATATCCCCACCACCAGG 59.526 60.000 0.00 0.00 42.21 4.45
724 726 1.141657 CAGTGATATCCCCACCACCAG 59.858 57.143 0.00 0.00 35.23 4.00
725 727 1.212375 CAGTGATATCCCCACCACCA 58.788 55.000 0.00 0.00 35.23 4.17
726 728 1.141053 GACAGTGATATCCCCACCACC 59.859 57.143 0.00 0.00 35.23 4.61
727 729 2.119495 AGACAGTGATATCCCCACCAC 58.881 52.381 0.00 0.00 35.23 4.16
728 730 2.568546 AGACAGTGATATCCCCACCA 57.431 50.000 0.00 0.00 35.23 4.17
729 731 3.456277 AGAAAGACAGTGATATCCCCACC 59.544 47.826 0.00 0.00 35.23 4.61
730 732 4.762289 AGAAAGACAGTGATATCCCCAC 57.238 45.455 0.00 0.00 34.89 4.61
731 733 6.615316 TGATTAGAAAGACAGTGATATCCCCA 59.385 38.462 0.00 0.00 0.00 4.96
732 734 7.067496 TGATTAGAAAGACAGTGATATCCCC 57.933 40.000 0.00 0.00 0.00 4.81
733 735 9.213799 GATTGATTAGAAAGACAGTGATATCCC 57.786 37.037 0.00 0.00 0.00 3.85
734 736 9.213799 GGATTGATTAGAAAGACAGTGATATCC 57.786 37.037 0.00 0.00 0.00 2.59
735 737 9.770097 TGGATTGATTAGAAAGACAGTGATATC 57.230 33.333 0.00 0.00 0.00 1.63
737 739 9.383519 GTTGGATTGATTAGAAAGACAGTGATA 57.616 33.333 0.00 0.00 0.00 2.15
738 740 7.337942 GGTTGGATTGATTAGAAAGACAGTGAT 59.662 37.037 0.00 0.00 0.00 3.06
739 741 6.655003 GGTTGGATTGATTAGAAAGACAGTGA 59.345 38.462 0.00 0.00 0.00 3.41
740 742 6.402550 CGGTTGGATTGATTAGAAAGACAGTG 60.403 42.308 0.00 0.00 0.00 3.66
741 743 5.643777 CGGTTGGATTGATTAGAAAGACAGT 59.356 40.000 0.00 0.00 0.00 3.55
742 744 5.643777 ACGGTTGGATTGATTAGAAAGACAG 59.356 40.000 0.00 0.00 0.00 3.51
743 745 5.556915 ACGGTTGGATTGATTAGAAAGACA 58.443 37.500 0.00 0.00 0.00 3.41
744 746 6.314784 CAACGGTTGGATTGATTAGAAAGAC 58.685 40.000 13.03 0.00 0.00 3.01
745 747 6.494893 CAACGGTTGGATTGATTAGAAAGA 57.505 37.500 13.03 0.00 0.00 2.52
760 762 1.127701 CAAATGCGAACCAACGGTTG 58.872 50.000 13.86 13.86 46.95 3.77
761 763 3.219033 TGCAAATGCGAACCAACGGTT 62.219 47.619 0.00 0.00 43.31 4.44
762 764 1.007849 GCAAATGCGAACCAACGGT 60.008 52.632 0.00 0.00 37.65 4.83
763 765 1.007964 TGCAAATGCGAACCAACGG 60.008 52.632 0.35 0.00 45.83 4.44
764 766 1.595982 CGTGCAAATGCGAACCAACG 61.596 55.000 0.35 0.39 45.83 4.10
765 767 0.593773 ACGTGCAAATGCGAACCAAC 60.594 50.000 1.06 0.00 45.83 3.77
766 768 0.317436 GACGTGCAAATGCGAACCAA 60.317 50.000 0.00 0.00 45.83 3.67
767 769 1.281353 GACGTGCAAATGCGAACCA 59.719 52.632 0.00 0.00 45.83 3.67
768 770 1.442017 GGACGTGCAAATGCGAACC 60.442 57.895 0.63 1.44 45.83 3.62
769 771 1.792057 CGGACGTGCAAATGCGAAC 60.792 57.895 8.11 0.00 45.83 3.95
770 772 1.295357 ATCGGACGTGCAAATGCGAA 61.295 50.000 16.99 3.79 42.10 4.70
771 773 1.295357 AATCGGACGTGCAAATGCGA 61.295 50.000 15.71 15.71 45.83 5.10
772 774 0.454285 AAATCGGACGTGCAAATGCG 60.454 50.000 8.11 6.08 45.83 4.73
773 775 0.984109 CAAATCGGACGTGCAAATGC 59.016 50.000 8.11 0.00 42.50 3.56
774 776 2.241722 GACAAATCGGACGTGCAAATG 58.758 47.619 8.11 2.80 0.00 2.32
775 777 1.876799 TGACAAATCGGACGTGCAAAT 59.123 42.857 8.11 0.00 0.00 2.32
776 778 1.003331 GTGACAAATCGGACGTGCAAA 60.003 47.619 8.11 0.00 0.00 3.68
777 779 0.584396 GTGACAAATCGGACGTGCAA 59.416 50.000 8.11 0.00 0.00 4.08
778 780 1.553195 CGTGACAAATCGGACGTGCA 61.553 55.000 8.11 0.00 0.00 4.57
779 781 1.129809 CGTGACAAATCGGACGTGC 59.870 57.895 0.00 0.00 0.00 5.34
780 782 1.647213 CTACGTGACAAATCGGACGTG 59.353 52.381 0.00 0.00 44.32 4.49
781 783 1.536766 TCTACGTGACAAATCGGACGT 59.463 47.619 0.00 0.00 46.20 4.34
800 802 9.612620 AGATACAAATCAAACGTCAGATTTTTC 57.387 29.630 19.53 16.57 41.20 2.29
801 803 9.965824 AAGATACAAATCAAACGTCAGATTTTT 57.034 25.926 19.53 16.96 41.20 1.94
807 809 7.584987 AGGAAAAGATACAAATCAAACGTCAG 58.415 34.615 0.00 0.00 34.28 3.51
862 864 5.866335 TTTATGAGCAACGGTAATTTCGT 57.134 34.783 1.45 1.45 43.14 3.85
865 867 8.091449 TCCAATTTTTATGAGCAACGGTAATTT 58.909 29.630 0.00 0.00 0.00 1.82
1015 1026 0.812549 GAGAGGAGGAGGACGTGTTC 59.187 60.000 0.00 0.00 0.00 3.18
1851 1882 1.079543 CTGGGAGTTCCTCAGCACG 60.080 63.158 0.00 0.00 36.20 5.34
1974 2005 4.282703 ACAACATAGTACCGAGGTTTGAGT 59.717 41.667 0.00 0.00 0.00 3.41
2157 2194 6.405842 GGTTTTTGCATCTAAATCTAGTGGGG 60.406 42.308 0.00 0.00 0.00 4.96
2169 2206 4.151883 AGCCTTCTTGGTTTTTGCATCTA 58.848 39.130 0.00 0.00 38.35 1.98
2369 2413 3.140325 ACTGGATGACGACCAAAACAT 57.860 42.857 0.00 0.00 36.95 2.71
2370 2414 2.631160 ACTGGATGACGACCAAAACA 57.369 45.000 0.00 0.00 36.95 2.83
2442 2491 2.223572 GCCAGGTTCAGAAACTTGTGTG 60.224 50.000 0.00 0.00 40.01 3.82
2597 2647 7.225784 TGATACACATTACAAGGCATGTTTT 57.774 32.000 0.00 0.00 43.63 2.43
2607 2657 5.414454 GGGAAGCTGTTGATACACATTACAA 59.586 40.000 0.00 0.00 0.00 2.41
2695 2761 3.391296 GGCCTGGAACACTATCCTCATAA 59.609 47.826 0.00 0.00 40.35 1.90
2781 2847 4.021368 TGTCAGCACTTCCTCTTTACCTAC 60.021 45.833 0.00 0.00 0.00 3.18
2954 3021 4.282195 AGCAATCCATACCTAGCTACAGAC 59.718 45.833 0.00 0.00 0.00 3.51
3007 3076 5.588648 TGGTTGTGAAGAACCTAAGAAACAG 59.411 40.000 10.39 0.00 45.07 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.