Multiple sequence alignment - TraesCS7D01G185300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G185300 chr7D 100.000 3182 0 0 1 3182 138313240 138310059 0.000000e+00 5877.0
1 TraesCS7D01G185300 chr7D 89.808 2286 140 49 944 3182 138338183 138335944 0.000000e+00 2844.0
2 TraesCS7D01G185300 chr7D 86.819 349 14 3 363 680 572539122 572539469 8.390000e-96 361.0
3 TraesCS7D01G185300 chr7D 84.337 83 11 2 808 889 49427098 49427017 2.630000e-11 80.5
4 TraesCS7D01G185300 chr7D 95.652 46 1 1 30 75 138313042 138312998 4.400000e-09 73.1
5 TraesCS7D01G185300 chr7A 90.123 2278 149 39 943 3174 138351962 138349715 0.000000e+00 2891.0
6 TraesCS7D01G185300 chr7A 86.471 340 16 1 371 680 661577112 661577451 2.350000e-91 346.0
7 TraesCS7D01G185300 chr7A 88.421 95 11 0 218 312 35286608 35286702 7.210000e-22 115.0
8 TraesCS7D01G185300 chr7A 90.667 75 7 0 808 882 14453864 14453790 2.020000e-17 100.0
9 TraesCS7D01G185300 chr7B 95.241 1408 51 7 944 2342 103619470 103618070 0.000000e+00 2215.0
10 TraesCS7D01G185300 chr7B 97.034 843 25 0 2340 3182 103617989 103617147 0.000000e+00 1419.0
11 TraesCS7D01G185300 chr7B 85.387 349 19 3 363 680 629787614 629787267 1.830000e-87 333.0
12 TraesCS7D01G185300 chr7B 88.889 153 17 0 202 354 611934371 611934219 4.190000e-44 189.0
13 TraesCS7D01G185300 chr6D 76.181 1037 226 19 1148 2175 8397031 8396007 7.820000e-146 527.0
14 TraesCS7D01G185300 chr6D 75.819 1038 234 13 1148 2175 7901396 7902426 7.870000e-141 510.0
15 TraesCS7D01G185300 chr6D 93.985 133 8 0 74 206 366684924 366684792 5.380000e-48 202.0
16 TraesCS7D01G185300 chr6D 75.448 391 82 12 1157 1540 9798666 9798283 9.070000e-41 178.0
17 TraesCS7D01G185300 chr6D 85.294 102 12 3 786 886 424723652 424723751 5.620000e-18 102.0
18 TraesCS7D01G185300 chr6B 75.735 1055 233 21 1148 2190 15234730 15233687 2.830000e-140 508.0
19 TraesCS7D01G185300 chr6B 74.715 1052 227 22 1148 2190 16267512 16268533 1.750000e-117 433.0
20 TraesCS7D01G185300 chr6B 94.595 111 6 0 95 205 552405785 552405675 4.220000e-39 172.0
21 TraesCS7D01G185300 chr6B 97.872 47 0 1 199 244 368305412 368305366 2.630000e-11 80.5
22 TraesCS7D01G185300 chr6B 97.826 46 1 0 30 75 368305412 368305367 2.630000e-11 80.5
23 TraesCS7D01G185300 chr6A 76.197 731 157 14 1452 2175 8804124 8803404 1.390000e-98 370.0
24 TraesCS7D01G185300 chr6A 73.410 959 226 27 1231 2175 10924463 10923520 6.580000e-87 331.0
25 TraesCS7D01G185300 chr6A 90.411 146 12 2 74 218 507123090 507122946 1.170000e-44 191.0
26 TraesCS7D01G185300 chr3D 89.256 242 18 8 643 880 579162836 579163073 2.400000e-76 296.0
27 TraesCS7D01G185300 chr1A 85.417 288 11 13 424 680 59587473 59587186 1.450000e-68 270.0
28 TraesCS7D01G185300 chr1A 83.168 101 9 7 786 883 391943315 391943220 5.660000e-13 86.1
29 TraesCS7D01G185300 chr5A 84.722 288 13 13 424 680 328010779 328010492 3.150000e-65 259.0
30 TraesCS7D01G185300 chr5A 84.375 288 14 13 424 680 328017020 328016733 1.460000e-63 254.0
31 TraesCS7D01G185300 chr1D 91.429 175 15 0 1 175 9855537 9855363 1.140000e-59 241.0
32 TraesCS7D01G185300 chr1B 87.582 153 19 0 202 354 595607107 595606955 9.070000e-41 178.0
33 TraesCS7D01G185300 chr4D 90.152 132 13 0 223 354 132130486 132130355 4.220000e-39 172.0
34 TraesCS7D01G185300 chr4D 87.156 109 8 6 782 887 450197899 450197794 5.580000e-23 119.0
35 TraesCS7D01G185300 chr4D 100.000 33 0 0 694 726 494358797 494358765 9.530000e-06 62.1
36 TraesCS7D01G185300 chr3A 89.051 137 15 0 218 354 746057812 746057676 1.520000e-38 171.0
37 TraesCS7D01G185300 chr2D 85.000 100 10 4 786 883 634301464 634301560 2.610000e-16 97.1
38 TraesCS7D01G185300 chr2D 96.000 50 1 1 27 75 576403548 576403597 2.630000e-11 80.5
39 TraesCS7D01G185300 chr2D 97.872 47 0 1 199 244 576403552 576403598 2.630000e-11 80.5
40 TraesCS7D01G185300 chr2D 96.000 50 1 1 27 75 576421022 576421071 2.630000e-11 80.5
41 TraesCS7D01G185300 chr2D 96.000 50 1 1 27 75 576438874 576438923 2.630000e-11 80.5
42 TraesCS7D01G185300 chr2D 97.778 45 1 0 30 74 199139618 199139574 9.460000e-11 78.7
43 TraesCS7D01G185300 chr4B 91.176 68 6 0 817 884 139530956 139531023 3.380000e-15 93.5
44 TraesCS7D01G185300 chr4A 88.889 72 8 0 815 886 740283806 740283735 4.370000e-14 89.8
45 TraesCS7D01G185300 chr2A 96.000 50 1 1 27 75 650961327 650961376 2.630000e-11 80.5
46 TraesCS7D01G185300 chr2A 97.872 47 0 1 199 244 650961331 650961377 2.630000e-11 80.5
47 TraesCS7D01G185300 chr5D 95.833 48 1 1 27 73 49304482 49304529 3.400000e-10 76.8
48 TraesCS7D01G185300 chrUn 86.765 68 6 3 202 267 79433329 79433263 4.400000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G185300 chr7D 138310059 138313240 3181 True 2975.05 5877 97.8260 1 3182 2 chr7D.!!$R3 3181
1 TraesCS7D01G185300 chr7D 138335944 138338183 2239 True 2844.00 2844 89.8080 944 3182 1 chr7D.!!$R2 2238
2 TraesCS7D01G185300 chr7A 138349715 138351962 2247 True 2891.00 2891 90.1230 943 3174 1 chr7A.!!$R2 2231
3 TraesCS7D01G185300 chr7B 103617147 103619470 2323 True 1817.00 2215 96.1375 944 3182 2 chr7B.!!$R3 2238
4 TraesCS7D01G185300 chr6D 8396007 8397031 1024 True 527.00 527 76.1810 1148 2175 1 chr6D.!!$R1 1027
5 TraesCS7D01G185300 chr6D 7901396 7902426 1030 False 510.00 510 75.8190 1148 2175 1 chr6D.!!$F1 1027
6 TraesCS7D01G185300 chr6B 15233687 15234730 1043 True 508.00 508 75.7350 1148 2190 1 chr6B.!!$R1 1042
7 TraesCS7D01G185300 chr6B 16267512 16268533 1021 False 433.00 433 74.7150 1148 2190 1 chr6B.!!$F1 1042
8 TraesCS7D01G185300 chr6A 8803404 8804124 720 True 370.00 370 76.1970 1452 2175 1 chr6A.!!$R1 723
9 TraesCS7D01G185300 chr6A 10923520 10924463 943 True 331.00 331 73.4100 1231 2175 1 chr6A.!!$R2 944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 753 0.032217 AAGGAGGAGGAGCAGAGGAG 60.032 60.0 0.0 0.0 0.0 3.69 F
757 758 0.033601 GGAGGAGCAGAGGAGAGACA 60.034 60.0 0.0 0.0 0.0 3.41 F
768 769 0.034863 GGAGAGACAGACGAGAGGGT 60.035 60.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 1968 0.312729 GAGCCGAGCCTCTAAGCTAC 59.687 60.0 1.38 0.0 45.15 3.58 R
1971 1981 0.896940 AGTACCGAGGTTTGAGCCGA 60.897 55.0 0.00 0.0 0.00 5.54 R
2234 2248 1.051008 TGCTTTGCAGACTCCAGAGA 58.949 50.0 0.70 0.0 33.32 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.925861 GAGCCATGGCCGGAGCTC 62.926 72.222 33.14 18.85 44.36 4.09
26 27 2.811317 CCGGAGCTCGCACTTGTC 60.811 66.667 7.83 0.00 37.59 3.18
27 28 3.175240 CGGAGCTCGCACTTGTCG 61.175 66.667 7.83 0.00 0.00 4.35
28 29 3.482783 GGAGCTCGCACTTGTCGC 61.483 66.667 7.83 0.00 0.00 5.19
92 93 2.768344 CCCCGGTGTCCCTGCTAT 60.768 66.667 0.00 0.00 0.00 2.97
93 94 2.505982 CCCGGTGTCCCTGCTATG 59.494 66.667 0.00 0.00 0.00 2.23
94 95 2.505982 CCGGTGTCCCTGCTATGG 59.494 66.667 0.00 0.00 0.00 2.74
95 96 2.203070 CGGTGTCCCTGCTATGGC 60.203 66.667 0.00 0.00 39.26 4.40
96 97 2.203070 GGTGTCCCTGCTATGGCG 60.203 66.667 0.00 0.00 42.25 5.69
97 98 2.203070 GTGTCCCTGCTATGGCGG 60.203 66.667 2.23 2.23 43.98 6.13
98 99 4.175337 TGTCCCTGCTATGGCGGC 62.175 66.667 3.96 0.00 43.09 6.53
99 100 4.937431 GTCCCTGCTATGGCGGCC 62.937 72.222 13.32 13.32 43.09 6.13
102 103 4.976925 CCTGCTATGGCGGCCGAG 62.977 72.222 33.48 19.04 43.09 4.63
122 123 4.804420 TGGCCGCCTCCTCCTCAT 62.804 66.667 11.61 0.00 0.00 2.90
123 124 3.483869 GGCCGCCTCCTCCTCATT 61.484 66.667 0.71 0.00 0.00 2.57
124 125 2.110006 GCCGCCTCCTCCTCATTC 59.890 66.667 0.00 0.00 0.00 2.67
125 126 2.735772 GCCGCCTCCTCCTCATTCA 61.736 63.158 0.00 0.00 0.00 2.57
126 127 2.049627 GCCGCCTCCTCCTCATTCAT 62.050 60.000 0.00 0.00 0.00 2.57
127 128 0.034616 CCGCCTCCTCCTCATTCATC 59.965 60.000 0.00 0.00 0.00 2.92
128 129 1.047002 CGCCTCCTCCTCATTCATCT 58.953 55.000 0.00 0.00 0.00 2.90
129 130 1.000731 CGCCTCCTCCTCATTCATCTC 59.999 57.143 0.00 0.00 0.00 2.75
130 131 1.347378 GCCTCCTCCTCATTCATCTCC 59.653 57.143 0.00 0.00 0.00 3.71
131 132 2.687297 CCTCCTCCTCATTCATCTCCA 58.313 52.381 0.00 0.00 0.00 3.86
132 133 2.633967 CCTCCTCCTCATTCATCTCCAG 59.366 54.545 0.00 0.00 0.00 3.86
133 134 2.633967 CTCCTCCTCATTCATCTCCAGG 59.366 54.545 0.00 0.00 0.00 4.45
134 135 2.022625 TCCTCCTCATTCATCTCCAGGT 60.023 50.000 0.00 0.00 0.00 4.00
135 136 2.368221 CCTCCTCATTCATCTCCAGGTC 59.632 54.545 0.00 0.00 0.00 3.85
136 137 2.034878 TCCTCATTCATCTCCAGGTCG 58.965 52.381 0.00 0.00 0.00 4.79
137 138 1.539929 CCTCATTCATCTCCAGGTCGC 60.540 57.143 0.00 0.00 0.00 5.19
138 139 0.465705 TCATTCATCTCCAGGTCGCC 59.534 55.000 0.00 0.00 0.00 5.54
139 140 0.877649 CATTCATCTCCAGGTCGCCG 60.878 60.000 0.00 0.00 0.00 6.46
140 141 2.032860 ATTCATCTCCAGGTCGCCGG 62.033 60.000 0.00 0.00 0.00 6.13
141 142 4.899239 CATCTCCAGGTCGCCGGC 62.899 72.222 19.07 19.07 0.00 6.13
161 162 2.366469 AAGCCGAGCTTCTTGGAGA 58.634 52.632 4.32 0.00 46.77 3.71
162 163 0.036858 AAGCCGAGCTTCTTGGAGAC 60.037 55.000 4.32 0.00 46.77 3.36
163 164 1.448717 GCCGAGCTTCTTGGAGACC 60.449 63.158 4.32 0.00 37.20 3.85
164 165 1.975327 CCGAGCTTCTTGGAGACCA 59.025 57.895 0.00 0.00 37.20 4.02
165 166 0.108424 CCGAGCTTCTTGGAGACCAG 60.108 60.000 0.00 0.00 37.20 4.00
166 167 0.739112 CGAGCTTCTTGGAGACCAGC 60.739 60.000 0.00 0.00 33.81 4.85
167 168 0.392327 GAGCTTCTTGGAGACCAGCC 60.392 60.000 0.00 0.00 33.81 4.85
168 169 1.130054 AGCTTCTTGGAGACCAGCCA 61.130 55.000 0.00 0.00 33.81 4.75
169 170 0.250901 GCTTCTTGGAGACCAGCCAA 60.251 55.000 0.00 0.00 42.81 4.52
170 171 1.528129 CTTCTTGGAGACCAGCCAAC 58.472 55.000 0.00 0.00 40.32 3.77
171 172 0.110486 TTCTTGGAGACCAGCCAACC 59.890 55.000 0.00 0.00 40.32 3.77
172 173 1.672356 CTTGGAGACCAGCCAACCG 60.672 63.158 0.00 0.00 40.32 4.44
173 174 2.111999 CTTGGAGACCAGCCAACCGA 62.112 60.000 0.00 0.00 40.32 4.69
174 175 2.111999 TTGGAGACCAGCCAACCGAG 62.112 60.000 0.00 0.00 40.32 4.63
175 176 2.266055 GAGACCAGCCAACCGAGG 59.734 66.667 0.00 0.00 0.00 4.63
183 184 4.410400 CCAACCGAGGCCCCAGTC 62.410 72.222 0.00 0.00 0.00 3.51
184 185 4.410400 CAACCGAGGCCCCAGTCC 62.410 72.222 0.00 0.00 0.00 3.85
195 196 4.379243 CCAGTCCGACCAGCGCTT 62.379 66.667 7.50 0.00 39.11 4.68
196 197 3.114616 CAGTCCGACCAGCGCTTG 61.115 66.667 7.50 7.21 39.11 4.01
197 198 3.303135 AGTCCGACCAGCGCTTGA 61.303 61.111 16.40 0.79 39.11 3.02
198 199 2.811317 GTCCGACCAGCGCTTGAG 60.811 66.667 16.40 6.39 39.11 3.02
199 200 4.742201 TCCGACCAGCGCTTGAGC 62.742 66.667 16.40 5.82 39.11 4.26
323 324 4.821589 CCGCGCCCAGGTCTTCTC 62.822 72.222 0.00 0.00 0.00 2.87
325 326 4.821589 GCGCCCAGGTCTTCTCGG 62.822 72.222 0.00 0.00 0.00 4.63
326 327 4.821589 CGCCCAGGTCTTCTCGGC 62.822 72.222 0.00 0.00 44.86 5.54
327 328 4.821589 GCCCAGGTCTTCTCGGCG 62.822 72.222 0.00 0.00 39.85 6.46
328 329 3.068691 CCCAGGTCTTCTCGGCGA 61.069 66.667 10.14 10.14 0.00 5.54
329 330 2.427245 CCCAGGTCTTCTCGGCGAT 61.427 63.158 11.27 0.00 0.00 4.58
330 331 1.227089 CCAGGTCTTCTCGGCGATG 60.227 63.158 11.27 3.38 0.00 3.84
331 332 1.513158 CAGGTCTTCTCGGCGATGT 59.487 57.895 11.27 0.00 0.00 3.06
332 333 0.526524 CAGGTCTTCTCGGCGATGTC 60.527 60.000 11.27 1.82 0.00 3.06
333 334 1.586564 GGTCTTCTCGGCGATGTCG 60.587 63.158 11.27 0.00 43.27 4.35
334 335 1.428219 GTCTTCTCGGCGATGTCGA 59.572 57.895 11.27 0.14 43.02 4.20
335 336 0.179171 GTCTTCTCGGCGATGTCGAA 60.179 55.000 11.27 9.66 39.77 3.71
336 337 0.179171 TCTTCTCGGCGATGTCGAAC 60.179 55.000 11.27 0.00 39.77 3.95
337 338 1.464429 CTTCTCGGCGATGTCGAACG 61.464 60.000 11.27 9.71 39.77 3.95
390 391 2.743928 CTCCTTGCACCGCCACTC 60.744 66.667 0.00 0.00 0.00 3.51
391 392 4.329545 TCCTTGCACCGCCACTCC 62.330 66.667 0.00 0.00 0.00 3.85
392 393 4.641645 CCTTGCACCGCCACTCCA 62.642 66.667 0.00 0.00 0.00 3.86
393 394 2.360350 CTTGCACCGCCACTCCAT 60.360 61.111 0.00 0.00 0.00 3.41
394 395 2.672651 TTGCACCGCCACTCCATG 60.673 61.111 0.00 0.00 0.00 3.66
395 396 3.490031 TTGCACCGCCACTCCATGT 62.490 57.895 0.00 0.00 0.00 3.21
396 397 3.127533 GCACCGCCACTCCATGTC 61.128 66.667 0.00 0.00 0.00 3.06
397 398 2.436646 CACCGCCACTCCATGTCC 60.437 66.667 0.00 0.00 0.00 4.02
398 399 2.927856 ACCGCCACTCCATGTCCA 60.928 61.111 0.00 0.00 0.00 4.02
399 400 2.124983 CCGCCACTCCATGTCCAG 60.125 66.667 0.00 0.00 0.00 3.86
400 401 2.821366 CGCCACTCCATGTCCAGC 60.821 66.667 0.00 0.00 0.00 4.85
401 402 2.439156 GCCACTCCATGTCCAGCC 60.439 66.667 0.00 0.00 0.00 4.85
402 403 2.124983 CCACTCCATGTCCAGCCG 60.125 66.667 0.00 0.00 0.00 5.52
403 404 2.821366 CACTCCATGTCCAGCCGC 60.821 66.667 0.00 0.00 0.00 6.53
404 405 4.457496 ACTCCATGTCCAGCCGCG 62.457 66.667 0.00 0.00 0.00 6.46
457 458 4.379243 CCCAGGCAGAACGCGTCT 62.379 66.667 14.44 8.97 43.84 4.18
458 459 2.571757 CCAGGCAGAACGCGTCTA 59.428 61.111 14.44 0.00 43.84 2.59
459 460 1.517257 CCAGGCAGAACGCGTCTAG 60.517 63.158 14.44 6.28 43.84 2.43
460 461 1.517257 CAGGCAGAACGCGTCTAGG 60.517 63.158 14.44 3.76 43.84 3.02
461 462 1.977544 AGGCAGAACGCGTCTAGGT 60.978 57.895 14.44 0.00 43.84 3.08
462 463 1.805945 GGCAGAACGCGTCTAGGTG 60.806 63.158 14.44 7.06 43.84 4.00
463 464 2.445438 GCAGAACGCGTCTAGGTGC 61.445 63.158 14.44 13.59 33.56 5.01
464 465 1.805945 CAGAACGCGTCTAGGTGCC 60.806 63.158 14.44 0.00 33.56 5.01
465 466 1.977544 AGAACGCGTCTAGGTGCCT 60.978 57.895 14.44 0.00 33.56 4.75
466 467 1.516603 GAACGCGTCTAGGTGCCTC 60.517 63.158 14.44 0.00 0.00 4.70
467 468 1.935327 GAACGCGTCTAGGTGCCTCT 61.935 60.000 14.44 0.00 0.00 3.69
468 469 1.935327 AACGCGTCTAGGTGCCTCTC 61.935 60.000 14.44 0.00 0.00 3.20
469 470 2.809010 GCGTCTAGGTGCCTCTCC 59.191 66.667 0.00 0.00 0.00 3.71
470 471 3.111939 CGTCTAGGTGCCTCTCCG 58.888 66.667 0.00 0.00 0.00 4.63
471 472 1.749638 CGTCTAGGTGCCTCTCCGT 60.750 63.158 0.00 0.00 0.00 4.69
472 473 1.810532 GTCTAGGTGCCTCTCCGTG 59.189 63.158 0.00 0.00 0.00 4.94
473 474 1.379977 TCTAGGTGCCTCTCCGTGG 60.380 63.158 0.00 0.00 0.00 4.94
474 475 1.379977 CTAGGTGCCTCTCCGTGGA 60.380 63.158 0.00 0.00 0.00 4.02
475 476 1.668101 CTAGGTGCCTCTCCGTGGAC 61.668 65.000 0.00 0.00 0.00 4.02
476 477 2.151307 TAGGTGCCTCTCCGTGGACT 62.151 60.000 0.00 0.00 0.00 3.85
477 478 2.574399 GTGCCTCTCCGTGGACTC 59.426 66.667 0.00 0.00 0.00 3.36
478 479 2.680352 TGCCTCTCCGTGGACTCC 60.680 66.667 0.00 0.00 0.00 3.85
479 480 3.462678 GCCTCTCCGTGGACTCCC 61.463 72.222 0.00 0.00 0.00 4.30
480 481 2.760385 CCTCTCCGTGGACTCCCC 60.760 72.222 0.00 0.00 0.00 4.81
481 482 3.141488 CTCTCCGTGGACTCCCCG 61.141 72.222 0.00 0.00 37.93 5.73
489 490 4.467084 GGACTCCCCGCGCATGAA 62.467 66.667 8.75 0.00 0.00 2.57
490 491 3.195698 GACTCCCCGCGCATGAAC 61.196 66.667 8.75 0.00 0.00 3.18
491 492 3.665675 GACTCCCCGCGCATGAACT 62.666 63.158 8.75 0.00 0.00 3.01
492 493 2.892425 CTCCCCGCGCATGAACTC 60.892 66.667 8.75 0.00 0.00 3.01
493 494 4.467084 TCCCCGCGCATGAACTCC 62.467 66.667 8.75 0.00 0.00 3.85
494 495 4.473520 CCCCGCGCATGAACTCCT 62.474 66.667 8.75 0.00 0.00 3.69
495 496 2.892425 CCCGCGCATGAACTCCTC 60.892 66.667 8.75 0.00 0.00 3.71
496 497 3.257561 CCGCGCATGAACTCCTCG 61.258 66.667 8.75 0.00 0.00 4.63
497 498 3.257561 CGCGCATGAACTCCTCGG 61.258 66.667 8.75 0.00 0.00 4.63
498 499 2.892425 GCGCATGAACTCCTCGGG 60.892 66.667 0.30 0.00 0.00 5.14
499 500 2.892425 CGCATGAACTCCTCGGGC 60.892 66.667 0.00 0.00 0.00 6.13
500 501 2.268920 GCATGAACTCCTCGGGCA 59.731 61.111 0.00 0.00 0.00 5.36
501 502 1.377202 GCATGAACTCCTCGGGCAA 60.377 57.895 0.00 0.00 0.00 4.52
502 503 1.372087 GCATGAACTCCTCGGGCAAG 61.372 60.000 0.00 0.00 0.00 4.01
503 504 0.250234 CATGAACTCCTCGGGCAAGA 59.750 55.000 0.00 0.00 0.00 3.02
504 505 1.134280 CATGAACTCCTCGGGCAAGAT 60.134 52.381 0.00 0.00 0.00 2.40
505 506 0.537188 TGAACTCCTCGGGCAAGATC 59.463 55.000 0.00 0.00 0.00 2.75
506 507 0.528684 GAACTCCTCGGGCAAGATCG 60.529 60.000 0.00 0.00 0.00 3.69
507 508 1.258445 AACTCCTCGGGCAAGATCGT 61.258 55.000 0.00 0.00 0.00 3.73
508 509 1.066587 CTCCTCGGGCAAGATCGTC 59.933 63.158 0.00 0.00 0.00 4.20
509 510 1.379977 TCCTCGGGCAAGATCGTCT 60.380 57.895 0.00 0.00 0.00 4.18
510 511 0.970937 TCCTCGGGCAAGATCGTCTT 60.971 55.000 0.00 0.00 37.14 3.01
511 512 0.528684 CCTCGGGCAAGATCGTCTTC 60.529 60.000 0.00 0.00 33.78 2.87
512 513 0.528684 CTCGGGCAAGATCGTCTTCC 60.529 60.000 0.00 3.73 33.78 3.46
513 514 1.218047 CGGGCAAGATCGTCTTCCA 59.782 57.895 12.97 0.00 33.78 3.53
514 515 0.807667 CGGGCAAGATCGTCTTCCAG 60.808 60.000 12.97 8.61 33.78 3.86
515 516 1.092345 GGGCAAGATCGTCTTCCAGC 61.092 60.000 12.97 8.19 33.78 4.85
516 517 0.391661 GGCAAGATCGTCTTCCAGCA 60.392 55.000 9.20 0.00 33.78 4.41
517 518 1.005340 GCAAGATCGTCTTCCAGCAG 58.995 55.000 0.00 0.00 33.78 4.24
518 519 1.649664 CAAGATCGTCTTCCAGCAGG 58.350 55.000 0.00 0.00 33.78 4.85
519 520 0.539051 AAGATCGTCTTCCAGCAGGG 59.461 55.000 0.00 0.00 28.99 4.45
520 521 1.522580 GATCGTCTTCCAGCAGGGC 60.523 63.158 0.00 0.00 36.21 5.19
521 522 2.932130 GATCGTCTTCCAGCAGGGCC 62.932 65.000 0.00 0.00 36.21 5.80
522 523 3.710722 CGTCTTCCAGCAGGGCCT 61.711 66.667 0.00 0.00 36.21 5.19
523 524 2.045536 GTCTTCCAGCAGGGCCTG 60.046 66.667 29.44 29.44 36.21 4.85
542 543 4.853050 AGCGCATCTGCAGCTCCC 62.853 66.667 11.47 0.00 43.44 4.30
545 546 4.479993 GCATCTGCAGCTCCCCGT 62.480 66.667 9.47 0.00 41.59 5.28
546 547 2.513204 CATCTGCAGCTCCCCGTG 60.513 66.667 9.47 0.00 0.00 4.94
547 548 4.479993 ATCTGCAGCTCCCCGTGC 62.480 66.667 9.47 0.00 40.29 5.34
574 575 4.468689 GCCGTGGCCAGGTCCTAC 62.469 72.222 23.21 0.62 34.56 3.18
575 576 2.683933 CCGTGGCCAGGTCCTACT 60.684 66.667 23.21 0.00 0.00 2.57
576 577 2.722201 CCGTGGCCAGGTCCTACTC 61.722 68.421 23.21 0.00 0.00 2.59
577 578 2.893398 GTGGCCAGGTCCTACTCG 59.107 66.667 5.11 0.00 0.00 4.18
578 579 1.982938 GTGGCCAGGTCCTACTCGT 60.983 63.158 5.11 0.00 0.00 4.18
579 580 1.681327 TGGCCAGGTCCTACTCGTC 60.681 63.158 0.00 0.00 0.00 4.20
580 581 2.424733 GGCCAGGTCCTACTCGTCC 61.425 68.421 0.00 0.00 0.00 4.79
581 582 2.772691 GCCAGGTCCTACTCGTCCG 61.773 68.421 0.00 0.00 0.00 4.79
582 583 2.119655 CCAGGTCCTACTCGTCCGG 61.120 68.421 0.00 0.00 0.00 5.14
583 584 2.439883 AGGTCCTACTCGTCCGGC 60.440 66.667 0.00 0.00 0.00 6.13
584 585 3.885521 GGTCCTACTCGTCCGGCG 61.886 72.222 11.37 11.37 43.01 6.46
585 586 3.130160 GTCCTACTCGTCCGGCGT 61.130 66.667 16.00 4.78 42.13 5.68
586 587 2.821366 TCCTACTCGTCCGGCGTC 60.821 66.667 16.00 0.00 42.13 5.19
587 588 3.885521 CCTACTCGTCCGGCGTCC 61.886 72.222 16.00 0.00 42.13 4.79
613 614 3.345808 CCCGTGGTGCTCAACGTG 61.346 66.667 14.15 0.00 0.00 4.49
614 615 4.012895 CCGTGGTGCTCAACGTGC 62.013 66.667 14.15 0.00 0.00 5.34
615 616 4.012895 CGTGGTGCTCAACGTGCC 62.013 66.667 7.53 0.00 0.00 5.01
616 617 4.012895 GTGGTGCTCAACGTGCCG 62.013 66.667 0.00 0.00 0.00 5.69
619 620 3.712881 GTGCTCAACGTGCCGGTC 61.713 66.667 1.90 0.00 0.00 4.79
620 621 3.923864 TGCTCAACGTGCCGGTCT 61.924 61.111 1.90 0.00 0.00 3.85
621 622 3.414700 GCTCAACGTGCCGGTCTG 61.415 66.667 1.90 0.00 0.00 3.51
622 623 3.414700 CTCAACGTGCCGGTCTGC 61.415 66.667 1.90 0.00 0.00 4.26
623 624 3.865929 CTCAACGTGCCGGTCTGCT 62.866 63.158 1.90 0.00 0.00 4.24
624 625 3.414700 CAACGTGCCGGTCTGCTC 61.415 66.667 1.90 0.00 0.00 4.26
648 649 3.599412 CGGTCTTCGGGTTCTTCAA 57.401 52.632 0.00 0.00 34.75 2.69
649 650 1.429463 CGGTCTTCGGGTTCTTCAAG 58.571 55.000 0.00 0.00 34.75 3.02
650 651 1.809684 GGTCTTCGGGTTCTTCAAGG 58.190 55.000 0.00 0.00 0.00 3.61
651 652 1.346722 GGTCTTCGGGTTCTTCAAGGA 59.653 52.381 0.00 0.00 0.00 3.36
652 653 2.414806 GTCTTCGGGTTCTTCAAGGAC 58.585 52.381 0.00 0.00 0.00 3.85
653 654 2.043992 TCTTCGGGTTCTTCAAGGACA 58.956 47.619 0.00 0.00 0.00 4.02
654 655 2.436542 TCTTCGGGTTCTTCAAGGACAA 59.563 45.455 0.00 0.00 0.00 3.18
655 656 2.543777 TCGGGTTCTTCAAGGACAAG 57.456 50.000 0.00 0.00 0.00 3.16
656 657 2.043992 TCGGGTTCTTCAAGGACAAGA 58.956 47.619 0.00 0.00 0.00 3.02
657 658 2.436542 TCGGGTTCTTCAAGGACAAGAA 59.563 45.455 0.00 0.00 37.50 2.52
658 659 2.808543 CGGGTTCTTCAAGGACAAGAAG 59.191 50.000 0.00 0.00 39.90 2.85
659 660 3.149981 GGGTTCTTCAAGGACAAGAAGG 58.850 50.000 0.00 0.00 39.90 3.46
660 661 3.181443 GGGTTCTTCAAGGACAAGAAGGA 60.181 47.826 0.00 0.00 39.90 3.36
661 662 4.068599 GGTTCTTCAAGGACAAGAAGGAG 58.931 47.826 0.00 0.00 39.90 3.69
662 663 4.445019 GGTTCTTCAAGGACAAGAAGGAGT 60.445 45.833 0.00 0.00 39.90 3.85
663 664 4.608948 TCTTCAAGGACAAGAAGGAGTC 57.391 45.455 0.00 0.00 41.16 3.36
664 665 3.005897 TCTTCAAGGACAAGAAGGAGTCG 59.994 47.826 0.00 0.00 41.16 4.18
665 666 1.618837 TCAAGGACAAGAAGGAGTCGG 59.381 52.381 0.00 0.00 35.63 4.79
666 667 0.321996 AAGGACAAGAAGGAGTCGGC 59.678 55.000 0.00 0.00 35.63 5.54
667 668 1.446272 GGACAAGAAGGAGTCGGCG 60.446 63.158 0.00 0.00 35.63 6.46
668 669 1.446272 GACAAGAAGGAGTCGGCGG 60.446 63.158 7.21 0.00 0.00 6.13
669 670 2.815647 CAAGAAGGAGTCGGCGGC 60.816 66.667 1.71 1.71 0.00 6.53
670 671 4.083862 AAGAAGGAGTCGGCGGCC 62.084 66.667 8.37 9.54 0.00 6.13
672 673 4.821589 GAAGGAGTCGGCGGCCAG 62.822 72.222 20.71 11.98 0.00 4.85
723 724 4.034258 CTGCAGCAGCGGGTTGTG 62.034 66.667 10.14 0.00 46.23 3.33
726 727 3.663176 CAGCAGCGGGTTGTGGTG 61.663 66.667 0.00 0.00 35.97 4.17
727 728 3.872603 AGCAGCGGGTTGTGGTGA 61.873 61.111 0.00 0.00 36.99 4.02
728 729 2.904866 GCAGCGGGTTGTGGTGAA 60.905 61.111 0.00 0.00 36.99 3.18
729 730 2.268076 GCAGCGGGTTGTGGTGAAT 61.268 57.895 0.00 0.00 36.99 2.57
730 731 1.580942 CAGCGGGTTGTGGTGAATG 59.419 57.895 0.00 0.00 36.99 2.67
731 732 1.603455 AGCGGGTTGTGGTGAATGG 60.603 57.895 0.00 0.00 0.00 3.16
732 733 1.602323 GCGGGTTGTGGTGAATGGA 60.602 57.895 0.00 0.00 0.00 3.41
733 734 1.175983 GCGGGTTGTGGTGAATGGAA 61.176 55.000 0.00 0.00 0.00 3.53
734 735 1.323412 CGGGTTGTGGTGAATGGAAA 58.677 50.000 0.00 0.00 0.00 3.13
735 736 1.269448 CGGGTTGTGGTGAATGGAAAG 59.731 52.381 0.00 0.00 0.00 2.62
736 737 1.618343 GGGTTGTGGTGAATGGAAAGG 59.382 52.381 0.00 0.00 0.00 3.11
737 738 2.593026 GGTTGTGGTGAATGGAAAGGA 58.407 47.619 0.00 0.00 0.00 3.36
738 739 2.558359 GGTTGTGGTGAATGGAAAGGAG 59.442 50.000 0.00 0.00 0.00 3.69
739 740 2.558359 GTTGTGGTGAATGGAAAGGAGG 59.442 50.000 0.00 0.00 0.00 4.30
740 741 2.061848 TGTGGTGAATGGAAAGGAGGA 58.938 47.619 0.00 0.00 0.00 3.71
741 742 2.040278 TGTGGTGAATGGAAAGGAGGAG 59.960 50.000 0.00 0.00 0.00 3.69
742 743 1.635487 TGGTGAATGGAAAGGAGGAGG 59.365 52.381 0.00 0.00 0.00 4.30
743 744 1.916181 GGTGAATGGAAAGGAGGAGGA 59.084 52.381 0.00 0.00 0.00 3.71
744 745 2.092699 GGTGAATGGAAAGGAGGAGGAG 60.093 54.545 0.00 0.00 0.00 3.69
745 746 1.561542 TGAATGGAAAGGAGGAGGAGC 59.438 52.381 0.00 0.00 0.00 4.70
746 747 1.561542 GAATGGAAAGGAGGAGGAGCA 59.438 52.381 0.00 0.00 0.00 4.26
747 748 1.211456 ATGGAAAGGAGGAGGAGCAG 58.789 55.000 0.00 0.00 0.00 4.24
748 749 0.117140 TGGAAAGGAGGAGGAGCAGA 59.883 55.000 0.00 0.00 0.00 4.26
749 750 0.829990 GGAAAGGAGGAGGAGCAGAG 59.170 60.000 0.00 0.00 0.00 3.35
750 751 0.829990 GAAAGGAGGAGGAGCAGAGG 59.170 60.000 0.00 0.00 0.00 3.69
751 752 0.415429 AAAGGAGGAGGAGCAGAGGA 59.585 55.000 0.00 0.00 0.00 3.71
752 753 0.032217 AAGGAGGAGGAGCAGAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
753 754 0.923729 AGGAGGAGGAGCAGAGGAGA 60.924 60.000 0.00 0.00 0.00 3.71
754 755 0.468029 GGAGGAGGAGCAGAGGAGAG 60.468 65.000 0.00 0.00 0.00 3.20
755 756 0.550914 GAGGAGGAGCAGAGGAGAGA 59.449 60.000 0.00 0.00 0.00 3.10
756 757 0.258774 AGGAGGAGCAGAGGAGAGAC 59.741 60.000 0.00 0.00 0.00 3.36
757 758 0.033601 GGAGGAGCAGAGGAGAGACA 60.034 60.000 0.00 0.00 0.00 3.41
758 759 1.392589 GAGGAGCAGAGGAGAGACAG 58.607 60.000 0.00 0.00 0.00 3.51
759 760 0.998928 AGGAGCAGAGGAGAGACAGA 59.001 55.000 0.00 0.00 0.00 3.41
760 761 1.102978 GGAGCAGAGGAGAGACAGAC 58.897 60.000 0.00 0.00 0.00 3.51
761 762 0.732571 GAGCAGAGGAGAGACAGACG 59.267 60.000 0.00 0.00 0.00 4.18
762 763 0.326595 AGCAGAGGAGAGACAGACGA 59.673 55.000 0.00 0.00 0.00 4.20
763 764 0.732571 GCAGAGGAGAGACAGACGAG 59.267 60.000 0.00 0.00 0.00 4.18
764 765 1.677518 GCAGAGGAGAGACAGACGAGA 60.678 57.143 0.00 0.00 0.00 4.04
765 766 2.279741 CAGAGGAGAGACAGACGAGAG 58.720 57.143 0.00 0.00 0.00 3.20
766 767 1.209504 AGAGGAGAGACAGACGAGAGG 59.790 57.143 0.00 0.00 0.00 3.69
767 768 0.254747 AGGAGAGACAGACGAGAGGG 59.745 60.000 0.00 0.00 0.00 4.30
768 769 0.034863 GGAGAGACAGACGAGAGGGT 60.035 60.000 0.00 0.00 0.00 4.34
769 770 1.091537 GAGAGACAGACGAGAGGGTG 58.908 60.000 0.00 0.00 0.00 4.61
770 771 0.322997 AGAGACAGACGAGAGGGTGG 60.323 60.000 0.00 0.00 0.00 4.61
771 772 1.304547 AGACAGACGAGAGGGTGGG 60.305 63.158 0.00 0.00 0.00 4.61
772 773 1.304217 GACAGACGAGAGGGTGGGA 60.304 63.158 0.00 0.00 0.00 4.37
773 774 1.304547 ACAGACGAGAGGGTGGGAG 60.305 63.158 0.00 0.00 0.00 4.30
774 775 2.055042 CAGACGAGAGGGTGGGAGG 61.055 68.421 0.00 0.00 0.00 4.30
775 776 2.760385 GACGAGAGGGTGGGAGGG 60.760 72.222 0.00 0.00 0.00 4.30
776 777 3.273654 ACGAGAGGGTGGGAGGGA 61.274 66.667 0.00 0.00 0.00 4.20
777 778 2.760385 CGAGAGGGTGGGAGGGAC 60.760 72.222 0.00 0.00 0.00 4.46
778 779 2.450243 GAGAGGGTGGGAGGGACA 59.550 66.667 0.00 0.00 0.00 4.02
779 780 1.229529 GAGAGGGTGGGAGGGACAA 60.230 63.158 0.00 0.00 0.00 3.18
780 781 1.539124 AGAGGGTGGGAGGGACAAC 60.539 63.158 0.00 0.00 0.00 3.32
781 782 2.928396 AGGGTGGGAGGGACAACG 60.928 66.667 0.00 0.00 0.00 4.10
782 783 3.246880 GGGTGGGAGGGACAACGT 61.247 66.667 0.00 0.00 0.00 3.99
783 784 2.032071 GGTGGGAGGGACAACGTG 59.968 66.667 0.00 0.00 0.00 4.49
784 785 2.814835 GGTGGGAGGGACAACGTGT 61.815 63.158 0.00 0.00 0.00 4.49
785 786 1.597027 GTGGGAGGGACAACGTGTG 60.597 63.158 0.00 0.00 0.00 3.82
786 787 1.762858 TGGGAGGGACAACGTGTGA 60.763 57.895 0.00 0.00 0.00 3.58
787 788 1.338890 TGGGAGGGACAACGTGTGAA 61.339 55.000 0.00 0.00 0.00 3.18
788 789 0.179040 GGGAGGGACAACGTGTGAAA 60.179 55.000 0.00 0.00 0.00 2.69
789 790 1.544759 GGGAGGGACAACGTGTGAAAT 60.545 52.381 0.00 0.00 0.00 2.17
790 791 2.227194 GGAGGGACAACGTGTGAAATT 58.773 47.619 0.00 0.00 0.00 1.82
791 792 2.621526 GGAGGGACAACGTGTGAAATTT 59.378 45.455 0.00 0.00 0.00 1.82
792 793 3.067601 GGAGGGACAACGTGTGAAATTTT 59.932 43.478 0.00 0.00 0.00 1.82
793 794 4.440940 GGAGGGACAACGTGTGAAATTTTT 60.441 41.667 0.00 0.00 0.00 1.94
812 813 5.855740 TTTTTCACCCACGTCCTAAAATT 57.144 34.783 0.00 0.00 0.00 1.82
813 814 5.855740 TTTTCACCCACGTCCTAAAATTT 57.144 34.783 0.00 0.00 0.00 1.82
814 815 5.855740 TTTCACCCACGTCCTAAAATTTT 57.144 34.783 8.75 8.75 0.00 1.82
815 816 5.441709 TTCACCCACGTCCTAAAATTTTC 57.558 39.130 6.72 0.00 0.00 2.29
816 817 3.499157 TCACCCACGTCCTAAAATTTTCG 59.501 43.478 6.72 7.41 0.00 3.46
817 818 2.227149 ACCCACGTCCTAAAATTTTCGC 59.773 45.455 6.72 0.00 0.00 4.70
818 819 2.486592 CCCACGTCCTAAAATTTTCGCT 59.513 45.455 6.72 0.00 0.00 4.93
819 820 3.488489 CCACGTCCTAAAATTTTCGCTG 58.512 45.455 6.72 6.15 0.00 5.18
820 821 3.488489 CACGTCCTAAAATTTTCGCTGG 58.512 45.455 6.72 6.31 0.00 4.85
821 822 2.095415 ACGTCCTAAAATTTTCGCTGGC 60.095 45.455 6.72 0.00 0.00 4.85
822 823 2.095466 CGTCCTAAAATTTTCGCTGGCA 60.095 45.455 6.72 0.00 0.00 4.92
823 824 3.501950 GTCCTAAAATTTTCGCTGGCAG 58.498 45.455 10.94 10.94 0.00 4.85
824 825 2.094752 TCCTAAAATTTTCGCTGGCAGC 60.095 45.455 29.22 29.22 38.02 5.25
825 826 2.262211 CTAAAATTTTCGCTGGCAGCC 58.738 47.619 32.08 15.54 38.18 4.85
826 827 0.320683 AAAATTTTCGCTGGCAGCCC 60.321 50.000 32.08 8.01 38.18 5.19
827 828 2.171209 AAATTTTCGCTGGCAGCCCC 62.171 55.000 32.08 7.23 38.18 5.80
828 829 3.590466 ATTTTCGCTGGCAGCCCCT 62.590 57.895 32.08 11.01 38.18 4.79
829 830 4.722700 TTTCGCTGGCAGCCCCTC 62.723 66.667 32.08 6.45 38.18 4.30
833 834 3.376918 GCTGGCAGCCCCTCAAAC 61.377 66.667 28.87 0.00 34.48 2.93
834 835 3.058160 CTGGCAGCCCCTCAAACG 61.058 66.667 9.64 0.00 0.00 3.60
835 836 4.659172 TGGCAGCCCCTCAAACGG 62.659 66.667 9.64 0.00 0.00 4.44
840 841 2.981350 GCCCCTCAAACGGCGAAA 60.981 61.111 16.62 0.00 34.94 3.46
841 842 2.557372 GCCCCTCAAACGGCGAAAA 61.557 57.895 16.62 0.00 34.94 2.29
842 843 2.034607 CCCCTCAAACGGCGAAAAA 58.965 52.632 16.62 0.00 0.00 1.94
859 860 2.997485 AAAAATGCGTTCTGAGAGGC 57.003 45.000 0.00 1.23 0.00 4.70
860 861 2.191128 AAAATGCGTTCTGAGAGGCT 57.809 45.000 8.65 0.00 0.00 4.58
861 862 1.731720 AAATGCGTTCTGAGAGGCTC 58.268 50.000 6.34 6.34 0.00 4.70
862 863 0.610174 AATGCGTTCTGAGAGGCTCA 59.390 50.000 18.26 0.00 38.25 4.26
863 864 0.610174 ATGCGTTCTGAGAGGCTCAA 59.390 50.000 18.26 3.35 40.18 3.02
864 865 0.319900 TGCGTTCTGAGAGGCTCAAC 60.320 55.000 18.26 11.03 40.18 3.18
865 866 1.347817 GCGTTCTGAGAGGCTCAACG 61.348 60.000 24.89 24.89 43.34 4.10
866 867 0.734253 CGTTCTGAGAGGCTCAACGG 60.734 60.000 22.75 17.72 39.52 4.44
867 868 1.016653 GTTCTGAGAGGCTCAACGGC 61.017 60.000 18.26 1.02 40.18 5.68
874 875 2.586792 GGCTCAACGGCTGGAGAT 59.413 61.111 0.00 0.00 32.87 2.75
875 876 1.817099 GGCTCAACGGCTGGAGATG 60.817 63.158 0.00 0.00 32.87 2.90
876 877 2.467826 GCTCAACGGCTGGAGATGC 61.468 63.158 0.00 0.00 32.87 3.91
877 878 1.220206 CTCAACGGCTGGAGATGCT 59.780 57.895 0.00 0.00 32.87 3.79
878 879 0.809241 CTCAACGGCTGGAGATGCTC 60.809 60.000 0.00 0.00 32.87 4.26
879 880 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
880 881 0.461548 CAACGGCTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
881 882 1.134699 CAACGGCTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
882 883 0.749649 ACGGCTGGAGATGCTCTAAG 59.250 55.000 0.00 0.00 0.00 2.18
883 884 0.749649 CGGCTGGAGATGCTCTAAGT 59.250 55.000 0.00 0.00 0.00 2.24
884 885 1.269517 CGGCTGGAGATGCTCTAAGTC 60.270 57.143 0.00 0.00 0.00 3.01
885 886 2.038659 GGCTGGAGATGCTCTAAGTCT 58.961 52.381 0.00 0.00 0.00 3.24
886 887 2.433970 GGCTGGAGATGCTCTAAGTCTT 59.566 50.000 0.00 0.00 0.00 3.01
887 888 3.456280 GCTGGAGATGCTCTAAGTCTTG 58.544 50.000 0.00 0.00 0.00 3.02
888 889 3.740764 GCTGGAGATGCTCTAAGTCTTGG 60.741 52.174 0.00 0.00 0.00 3.61
889 890 2.169352 TGGAGATGCTCTAAGTCTTGGC 59.831 50.000 0.00 0.00 0.00 4.52
890 891 2.484594 GGAGATGCTCTAAGTCTTGGCC 60.485 54.545 0.00 0.00 0.00 5.36
891 892 2.169352 GAGATGCTCTAAGTCTTGGCCA 59.831 50.000 0.00 0.00 0.00 5.36
892 893 2.573462 AGATGCTCTAAGTCTTGGCCAA 59.427 45.455 19.25 19.25 0.00 4.52
893 894 2.949177 TGCTCTAAGTCTTGGCCAAA 57.051 45.000 20.91 7.94 0.00 3.28
894 895 3.439857 TGCTCTAAGTCTTGGCCAAAT 57.560 42.857 20.91 8.69 0.00 2.32
895 896 3.347216 TGCTCTAAGTCTTGGCCAAATC 58.653 45.455 20.91 14.87 0.00 2.17
896 897 3.009473 TGCTCTAAGTCTTGGCCAAATCT 59.991 43.478 20.91 16.90 0.00 2.40
897 898 4.013050 GCTCTAAGTCTTGGCCAAATCTT 58.987 43.478 26.81 26.81 0.00 2.40
898 899 4.095632 GCTCTAAGTCTTGGCCAAATCTTC 59.904 45.833 27.20 15.57 0.00 2.87
899 900 5.241403 TCTAAGTCTTGGCCAAATCTTCA 57.759 39.130 27.20 17.51 0.00 3.02
900 901 5.248640 TCTAAGTCTTGGCCAAATCTTCAG 58.751 41.667 27.20 22.34 0.00 3.02
901 902 2.800250 AGTCTTGGCCAAATCTTCAGG 58.200 47.619 20.91 5.12 0.00 3.86
902 903 2.108952 AGTCTTGGCCAAATCTTCAGGT 59.891 45.455 20.91 0.00 0.00 4.00
903 904 2.229784 GTCTTGGCCAAATCTTCAGGTG 59.770 50.000 20.91 3.54 0.00 4.00
904 905 1.547372 CTTGGCCAAATCTTCAGGTGG 59.453 52.381 20.91 0.00 0.00 4.61
905 906 0.482446 TGGCCAAATCTTCAGGTGGT 59.518 50.000 0.61 0.00 33.43 4.16
906 907 0.890683 GGCCAAATCTTCAGGTGGTG 59.109 55.000 0.00 0.00 33.43 4.17
907 908 0.244721 GCCAAATCTTCAGGTGGTGC 59.755 55.000 0.00 0.00 33.43 5.01
908 909 1.915141 CCAAATCTTCAGGTGGTGCT 58.085 50.000 0.00 0.00 0.00 4.40
909 910 2.879756 GCCAAATCTTCAGGTGGTGCTA 60.880 50.000 0.00 0.00 33.43 3.49
910 911 3.012518 CCAAATCTTCAGGTGGTGCTAG 58.987 50.000 0.00 0.00 0.00 3.42
911 912 3.012518 CAAATCTTCAGGTGGTGCTAGG 58.987 50.000 0.00 0.00 0.00 3.02
912 913 1.958288 ATCTTCAGGTGGTGCTAGGT 58.042 50.000 0.00 0.00 0.00 3.08
913 914 1.267121 TCTTCAGGTGGTGCTAGGTC 58.733 55.000 0.00 0.00 0.00 3.85
914 915 1.203187 TCTTCAGGTGGTGCTAGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
915 916 2.042569 TCTTCAGGTGGTGCTAGGTCTA 59.957 50.000 0.00 0.00 0.00 2.59
916 917 1.848652 TCAGGTGGTGCTAGGTCTAC 58.151 55.000 0.00 0.00 0.00 2.59
917 918 1.358103 TCAGGTGGTGCTAGGTCTACT 59.642 52.381 0.00 0.00 0.00 2.57
918 919 2.180276 CAGGTGGTGCTAGGTCTACTT 58.820 52.381 0.00 0.00 0.00 2.24
919 920 2.166664 CAGGTGGTGCTAGGTCTACTTC 59.833 54.545 0.00 0.00 0.00 3.01
920 921 1.481363 GGTGGTGCTAGGTCTACTTCC 59.519 57.143 0.00 0.00 0.00 3.46
921 922 2.176889 GTGGTGCTAGGTCTACTTCCA 58.823 52.381 0.00 0.00 0.00 3.53
922 923 2.094130 GTGGTGCTAGGTCTACTTCCAC 60.094 54.545 0.00 0.00 37.51 4.02
923 924 2.176889 GGTGCTAGGTCTACTTCCACA 58.823 52.381 0.00 0.00 33.31 4.17
924 925 2.094130 GGTGCTAGGTCTACTTCCACAC 60.094 54.545 0.00 0.00 33.31 3.82
925 926 2.826725 GTGCTAGGTCTACTTCCACACT 59.173 50.000 0.00 0.00 32.48 3.55
926 927 3.258622 GTGCTAGGTCTACTTCCACACTT 59.741 47.826 0.00 0.00 32.48 3.16
927 928 3.901844 TGCTAGGTCTACTTCCACACTTT 59.098 43.478 0.00 0.00 0.00 2.66
928 929 5.047519 GTGCTAGGTCTACTTCCACACTTTA 60.048 44.000 0.00 0.00 32.48 1.85
929 930 5.047519 TGCTAGGTCTACTTCCACACTTTAC 60.048 44.000 0.00 0.00 0.00 2.01
930 931 5.185442 GCTAGGTCTACTTCCACACTTTACT 59.815 44.000 0.00 0.00 0.00 2.24
931 932 6.295180 GCTAGGTCTACTTCCACACTTTACTT 60.295 42.308 0.00 0.00 0.00 2.24
932 933 6.496144 AGGTCTACTTCCACACTTTACTTT 57.504 37.500 0.00 0.00 0.00 2.66
933 934 6.896883 AGGTCTACTTCCACACTTTACTTTT 58.103 36.000 0.00 0.00 0.00 2.27
934 935 6.990939 AGGTCTACTTCCACACTTTACTTTTC 59.009 38.462 0.00 0.00 0.00 2.29
935 936 6.990939 GGTCTACTTCCACACTTTACTTTTCT 59.009 38.462 0.00 0.00 0.00 2.52
936 937 7.498239 GGTCTACTTCCACACTTTACTTTTCTT 59.502 37.037 0.00 0.00 0.00 2.52
937 938 8.890718 GTCTACTTCCACACTTTACTTTTCTTT 58.109 33.333 0.00 0.00 0.00 2.52
938 939 9.106070 TCTACTTCCACACTTTACTTTTCTTTC 57.894 33.333 0.00 0.00 0.00 2.62
939 940 7.939784 ACTTCCACACTTTACTTTTCTTTCT 57.060 32.000 0.00 0.00 0.00 2.52
940 941 8.349568 ACTTCCACACTTTACTTTTCTTTCTT 57.650 30.769 0.00 0.00 0.00 2.52
941 942 9.457436 ACTTCCACACTTTACTTTTCTTTCTTA 57.543 29.630 0.00 0.00 0.00 2.10
1012 1013 1.605992 CCAGCCATGCTTCTCCTCA 59.394 57.895 0.00 0.00 36.40 3.86
1190 1197 2.883828 CGTCTTGCCACCTCACCCT 61.884 63.158 0.00 0.00 0.00 4.34
1905 1915 3.544834 GCATGTCGGAATTCTTGATGTCG 60.545 47.826 5.23 0.00 0.00 4.35
1958 1968 4.842091 GCCGGCAATGCTCGCTTG 62.842 66.667 24.80 0.00 0.00 4.01
1971 1981 1.407258 CTCGCTTGTAGCTTAGAGGCT 59.593 52.381 0.00 0.00 45.29 4.58
2191 2202 6.647334 TCAGATTGCAATAACCAAGAACAA 57.353 33.333 12.97 0.00 0.00 2.83
2196 2207 6.398234 TTGCAATAACCAAGAACAAGCTTA 57.602 33.333 0.00 0.00 0.00 3.09
2234 2248 5.220453 CGCTTTTTGCACAATGAAGTTTTCT 60.220 36.000 2.87 0.00 43.06 2.52
2249 2263 3.389329 AGTTTTCTCTCTGGAGTCTGCAA 59.611 43.478 0.00 0.00 40.29 4.08
2256 2270 1.141657 TCTGGAGTCTGCAAAGCAAGT 59.858 47.619 0.00 0.00 38.41 3.16
2266 2280 1.202452 GCAAAGCAAGTTGGCAAGTCT 60.202 47.619 8.24 0.00 35.83 3.24
2271 2285 2.099756 AGCAAGTTGGCAAGTCTTGTTC 59.900 45.455 23.42 13.02 40.14 3.18
2392 2491 6.525578 TGTTTTGGTCGTCATCTAGTAGAT 57.474 37.500 6.86 6.86 34.74 1.98
2398 2497 8.515695 TTGGTCGTCATCTAGTAGATAAGAAA 57.484 34.615 12.38 3.09 32.12 2.52
2399 2498 8.155821 TGGTCGTCATCTAGTAGATAAGAAAG 57.844 38.462 12.38 5.45 32.12 2.62
2400 2499 7.991460 TGGTCGTCATCTAGTAGATAAGAAAGA 59.009 37.037 12.38 7.35 32.12 2.52
2401 2500 8.838365 GGTCGTCATCTAGTAGATAAGAAAGAA 58.162 37.037 12.38 0.00 32.12 2.52
2541 2645 4.337555 GGTCTGATTTGGGATGTGAGAATG 59.662 45.833 0.00 0.00 0.00 2.67
2621 2725 4.191033 ACAAACATGCCATGTATTGTGG 57.809 40.909 24.44 8.25 44.07 4.17
2709 2818 2.225467 TCCACATGAATTCGTGCACAA 58.775 42.857 24.48 10.71 36.36 3.33
2771 2901 4.562143 GCCAATGGAGCTTTTCTGTGAAAT 60.562 41.667 2.05 0.00 0.00 2.17
2818 2949 4.743644 ACACTTGTTGTCGAAAGTAGTAGC 59.256 41.667 0.10 0.00 34.90 3.58
2970 3108 6.778069 TCCATCTCTAGGTAGGTGTTGAATAG 59.222 42.308 0.00 0.00 0.00 1.73
3118 3257 7.190871 TCATTTCTGTTGTTCCGAAAGTTAAC 58.809 34.615 0.00 0.00 33.98 2.01
3176 3321 6.102663 TGTATTAGTTTGCTGCTCTCTTCTC 58.897 40.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.925861 GAGCTCCGGCCATGGCTC 62.926 72.222 34.70 23.35 43.07 4.70
9 10 2.811317 GACAAGTGCGAGCTCCGG 60.811 66.667 8.47 0.00 39.04 5.14
10 11 3.175240 CGACAAGTGCGAGCTCCG 61.175 66.667 8.47 4.62 42.21 4.63
11 12 3.482783 GCGACAAGTGCGAGCTCC 61.483 66.667 8.47 1.40 0.00 4.70
75 76 2.768344 ATAGCAGGGACACCGGGG 60.768 66.667 0.00 0.00 43.47 5.73
76 77 2.505982 CATAGCAGGGACACCGGG 59.494 66.667 6.32 0.00 43.47 5.73
77 78 2.505982 CCATAGCAGGGACACCGG 59.494 66.667 0.00 0.00 43.47 5.28
78 79 2.203070 GCCATAGCAGGGACACCG 60.203 66.667 0.00 0.00 43.47 4.94
79 80 2.203070 CGCCATAGCAGGGACACC 60.203 66.667 0.00 0.00 39.83 4.16
80 81 2.203070 CCGCCATAGCAGGGACAC 60.203 66.667 0.00 0.00 39.83 3.67
81 82 4.175337 GCCGCCATAGCAGGGACA 62.175 66.667 0.00 0.00 39.83 4.02
82 83 4.937431 GGCCGCCATAGCAGGGAC 62.937 72.222 3.91 0.00 39.83 4.46
85 86 4.976925 CTCGGCCGCCATAGCAGG 62.977 72.222 23.51 0.00 39.83 4.85
105 106 4.804420 ATGAGGAGGAGGCGGCCA 62.804 66.667 23.09 0.00 0.00 5.36
106 107 3.468326 GAATGAGGAGGAGGCGGCC 62.468 68.421 12.11 12.11 0.00 6.13
107 108 2.049627 ATGAATGAGGAGGAGGCGGC 62.050 60.000 0.00 0.00 0.00 6.53
108 109 0.034616 GATGAATGAGGAGGAGGCGG 59.965 60.000 0.00 0.00 0.00 6.13
109 110 1.000731 GAGATGAATGAGGAGGAGGCG 59.999 57.143 0.00 0.00 0.00 5.52
110 111 1.347378 GGAGATGAATGAGGAGGAGGC 59.653 57.143 0.00 0.00 0.00 4.70
111 112 2.633967 CTGGAGATGAATGAGGAGGAGG 59.366 54.545 0.00 0.00 0.00 4.30
112 113 2.633967 CCTGGAGATGAATGAGGAGGAG 59.366 54.545 0.00 0.00 0.00 3.69
113 114 2.022625 ACCTGGAGATGAATGAGGAGGA 60.023 50.000 0.00 0.00 0.00 3.71
114 115 2.368221 GACCTGGAGATGAATGAGGAGG 59.632 54.545 0.00 0.00 0.00 4.30
115 116 2.035704 CGACCTGGAGATGAATGAGGAG 59.964 54.545 0.00 0.00 0.00 3.69
116 117 2.034878 CGACCTGGAGATGAATGAGGA 58.965 52.381 0.00 0.00 0.00 3.71
117 118 1.539929 GCGACCTGGAGATGAATGAGG 60.540 57.143 0.00 0.00 0.00 3.86
118 119 1.539929 GGCGACCTGGAGATGAATGAG 60.540 57.143 0.00 0.00 0.00 2.90
119 120 0.465705 GGCGACCTGGAGATGAATGA 59.534 55.000 0.00 0.00 0.00 2.57
120 121 0.877649 CGGCGACCTGGAGATGAATG 60.878 60.000 0.00 0.00 0.00 2.67
121 122 1.443407 CGGCGACCTGGAGATGAAT 59.557 57.895 0.00 0.00 0.00 2.57
122 123 2.721167 CCGGCGACCTGGAGATGAA 61.721 63.158 9.30 0.00 0.00 2.57
123 124 3.147595 CCGGCGACCTGGAGATGA 61.148 66.667 9.30 0.00 0.00 2.92
124 125 4.899239 GCCGGCGACCTGGAGATG 62.899 72.222 12.58 0.00 0.00 2.90
144 145 1.594310 GTCTCCAAGAAGCTCGGCT 59.406 57.895 0.00 0.00 42.56 5.52
145 146 1.448717 GGTCTCCAAGAAGCTCGGC 60.449 63.158 0.00 0.00 0.00 5.54
146 147 0.108424 CTGGTCTCCAAGAAGCTCGG 60.108 60.000 0.00 0.00 30.80 4.63
147 148 0.739112 GCTGGTCTCCAAGAAGCTCG 60.739 60.000 0.00 0.00 30.80 5.03
148 149 0.392327 GGCTGGTCTCCAAGAAGCTC 60.392 60.000 0.00 0.00 30.76 4.09
149 150 1.130054 TGGCTGGTCTCCAAGAAGCT 61.130 55.000 0.00 0.00 30.76 3.74
150 151 0.250901 TTGGCTGGTCTCCAAGAAGC 60.251 55.000 0.00 0.00 38.57 3.86
151 152 1.528129 GTTGGCTGGTCTCCAAGAAG 58.472 55.000 0.00 0.00 43.57 2.85
152 153 0.110486 GGTTGGCTGGTCTCCAAGAA 59.890 55.000 0.00 0.00 43.57 2.52
153 154 1.761174 GGTTGGCTGGTCTCCAAGA 59.239 57.895 0.00 0.00 43.57 3.02
154 155 1.672356 CGGTTGGCTGGTCTCCAAG 60.672 63.158 0.00 0.00 43.57 3.61
155 156 2.111999 CTCGGTTGGCTGGTCTCCAA 62.112 60.000 0.00 0.00 40.98 3.53
156 157 2.525629 TCGGTTGGCTGGTCTCCA 60.526 61.111 0.00 0.00 0.00 3.86
157 158 2.266055 CTCGGTTGGCTGGTCTCC 59.734 66.667 0.00 0.00 0.00 3.71
158 159 2.266055 CCTCGGTTGGCTGGTCTC 59.734 66.667 0.00 0.00 0.00 3.36
166 167 4.410400 GACTGGGGCCTCGGTTGG 62.410 72.222 20.89 0.00 0.00 3.77
167 168 4.410400 GGACTGGGGCCTCGGTTG 62.410 72.222 20.89 0.17 0.00 3.77
178 179 4.379243 AAGCGCTGGTCGGACTGG 62.379 66.667 12.58 2.62 38.94 4.00
179 180 3.114616 CAAGCGCTGGTCGGACTG 61.115 66.667 12.58 0.00 38.94 3.51
180 181 3.288308 CTCAAGCGCTGGTCGGACT 62.288 63.158 12.58 0.00 38.94 3.85
181 182 2.811317 CTCAAGCGCTGGTCGGAC 60.811 66.667 12.58 0.00 38.94 4.79
182 183 4.742201 GCTCAAGCGCTGGTCGGA 62.742 66.667 12.58 3.08 38.94 4.55
306 307 4.821589 GAGAAGACCTGGGCGCGG 62.822 72.222 8.83 1.81 0.00 6.46
308 309 4.821589 CCGAGAAGACCTGGGCGC 62.822 72.222 0.00 0.00 33.91 6.53
311 312 2.427245 ATCGCCGAGAAGACCTGGG 61.427 63.158 0.00 0.00 42.97 4.45
312 313 1.227089 CATCGCCGAGAAGACCTGG 60.227 63.158 0.00 0.00 0.00 4.45
313 314 0.526524 GACATCGCCGAGAAGACCTG 60.527 60.000 0.00 0.00 0.00 4.00
314 315 1.810532 GACATCGCCGAGAAGACCT 59.189 57.895 0.00 0.00 0.00 3.85
315 316 1.586564 CGACATCGCCGAGAAGACC 60.587 63.158 0.00 0.00 0.00 3.85
316 317 0.179171 TTCGACATCGCCGAGAAGAC 60.179 55.000 0.00 0.00 39.60 3.01
317 318 0.179171 GTTCGACATCGCCGAGAAGA 60.179 55.000 0.00 0.00 39.60 2.87
318 319 1.464429 CGTTCGACATCGCCGAGAAG 61.464 60.000 0.00 0.00 39.60 2.85
319 320 1.513373 CGTTCGACATCGCCGAGAA 60.513 57.895 0.00 0.00 39.60 2.87
320 321 2.099638 CGTTCGACATCGCCGAGA 59.900 61.111 0.00 0.00 39.60 4.04
321 322 3.607987 GCGTTCGACATCGCCGAG 61.608 66.667 14.94 0.00 45.54 4.63
373 374 2.743928 GAGTGGCGGTGCAAGGAG 60.744 66.667 0.00 0.00 0.00 3.69
374 375 4.329545 GGAGTGGCGGTGCAAGGA 62.330 66.667 0.00 0.00 0.00 3.36
375 376 3.925630 ATGGAGTGGCGGTGCAAGG 62.926 63.158 0.00 0.00 0.00 3.61
376 377 2.360350 ATGGAGTGGCGGTGCAAG 60.360 61.111 0.00 0.00 0.00 4.01
377 378 2.672651 CATGGAGTGGCGGTGCAA 60.673 61.111 0.00 0.00 0.00 4.08
378 379 3.899981 GACATGGAGTGGCGGTGCA 62.900 63.158 0.00 0.00 0.00 4.57
379 380 3.127533 GACATGGAGTGGCGGTGC 61.128 66.667 0.00 0.00 0.00 5.01
380 381 2.436646 GGACATGGAGTGGCGGTG 60.437 66.667 0.00 0.00 36.36 4.94
381 382 2.927856 TGGACATGGAGTGGCGGT 60.928 61.111 0.00 0.00 36.36 5.68
382 383 2.124983 CTGGACATGGAGTGGCGG 60.125 66.667 0.00 0.00 36.36 6.13
383 384 2.821366 GCTGGACATGGAGTGGCG 60.821 66.667 0.00 0.00 36.36 5.69
384 385 2.439156 GGCTGGACATGGAGTGGC 60.439 66.667 0.00 0.00 33.92 5.01
385 386 2.124983 CGGCTGGACATGGAGTGG 60.125 66.667 0.00 0.00 0.00 4.00
386 387 2.821366 GCGGCTGGACATGGAGTG 60.821 66.667 0.00 0.00 0.00 3.51
387 388 4.457496 CGCGGCTGGACATGGAGT 62.457 66.667 0.00 0.00 0.00 3.85
440 441 2.890847 CTAGACGCGTTCTGCCTGGG 62.891 65.000 15.53 0.00 42.08 4.45
441 442 1.517257 CTAGACGCGTTCTGCCTGG 60.517 63.158 15.53 3.12 42.08 4.45
442 443 1.517257 CCTAGACGCGTTCTGCCTG 60.517 63.158 15.53 0.55 42.08 4.85
443 444 1.977544 ACCTAGACGCGTTCTGCCT 60.978 57.895 15.53 8.08 42.08 4.75
444 445 1.805945 CACCTAGACGCGTTCTGCC 60.806 63.158 15.53 0.00 42.08 4.85
445 446 2.445438 GCACCTAGACGCGTTCTGC 61.445 63.158 15.53 12.20 35.55 4.26
446 447 1.805945 GGCACCTAGACGCGTTCTG 60.806 63.158 15.53 6.26 35.55 3.02
447 448 1.935327 GAGGCACCTAGACGCGTTCT 61.935 60.000 15.53 14.61 38.51 3.01
448 449 1.516603 GAGGCACCTAGACGCGTTC 60.517 63.158 15.53 6.92 0.00 3.95
449 450 1.935327 GAGAGGCACCTAGACGCGTT 61.935 60.000 15.53 6.16 0.00 4.84
450 451 2.361357 AGAGGCACCTAGACGCGT 60.361 61.111 13.85 13.85 0.00 6.01
451 452 2.409651 GAGAGGCACCTAGACGCG 59.590 66.667 3.53 3.53 0.00 6.01
452 453 2.809010 GGAGAGGCACCTAGACGC 59.191 66.667 0.00 0.00 0.00 5.19
453 454 1.749638 ACGGAGAGGCACCTAGACG 60.750 63.158 0.00 0.00 0.00 4.18
454 455 1.668101 CCACGGAGAGGCACCTAGAC 61.668 65.000 0.00 0.00 0.00 2.59
455 456 1.379977 CCACGGAGAGGCACCTAGA 60.380 63.158 0.00 0.00 0.00 2.43
456 457 1.379977 TCCACGGAGAGGCACCTAG 60.380 63.158 0.00 0.00 38.46 3.02
457 458 1.681327 GTCCACGGAGAGGCACCTA 60.681 63.158 0.00 0.00 38.46 3.08
458 459 2.997897 GTCCACGGAGAGGCACCT 60.998 66.667 0.00 0.00 38.46 4.00
459 460 2.997897 AGTCCACGGAGAGGCACC 60.998 66.667 0.00 0.00 38.46 5.01
460 461 2.574399 GAGTCCACGGAGAGGCAC 59.426 66.667 0.00 0.00 38.46 5.01
461 462 2.680352 GGAGTCCACGGAGAGGCA 60.680 66.667 3.60 0.00 38.46 4.75
462 463 3.462678 GGGAGTCCACGGAGAGGC 61.463 72.222 12.30 0.00 38.46 4.70
463 464 2.760385 GGGGAGTCCACGGAGAGG 60.760 72.222 12.30 0.00 40.53 3.69
464 465 3.141488 CGGGGAGTCCACGGAGAG 61.141 72.222 26.78 0.00 34.36 3.20
472 473 4.467084 TTCATGCGCGGGGAGTCC 62.467 66.667 8.83 0.00 0.00 3.85
473 474 3.195698 GTTCATGCGCGGGGAGTC 61.196 66.667 8.83 0.00 0.00 3.36
474 475 3.665675 GAGTTCATGCGCGGGGAGT 62.666 63.158 8.83 0.00 0.00 3.85
475 476 2.892425 GAGTTCATGCGCGGGGAG 60.892 66.667 8.83 0.00 0.00 4.30
476 477 4.467084 GGAGTTCATGCGCGGGGA 62.467 66.667 8.83 0.00 0.00 4.81
477 478 4.473520 AGGAGTTCATGCGCGGGG 62.474 66.667 8.83 0.00 0.00 5.73
478 479 2.892425 GAGGAGTTCATGCGCGGG 60.892 66.667 8.83 0.00 0.00 6.13
479 480 3.257561 CGAGGAGTTCATGCGCGG 61.258 66.667 8.83 0.00 38.84 6.46
480 481 3.257561 CCGAGGAGTTCATGCGCG 61.258 66.667 0.00 0.00 42.06 6.86
481 482 2.892425 CCCGAGGAGTTCATGCGC 60.892 66.667 0.00 0.00 0.00 6.09
482 483 2.892425 GCCCGAGGAGTTCATGCG 60.892 66.667 0.00 0.00 0.00 4.73
483 484 1.372087 CTTGCCCGAGGAGTTCATGC 61.372 60.000 0.00 0.00 0.00 4.06
484 485 0.250234 TCTTGCCCGAGGAGTTCATG 59.750 55.000 0.00 0.00 0.00 3.07
485 486 1.139853 GATCTTGCCCGAGGAGTTCAT 59.860 52.381 0.00 0.00 0.00 2.57
486 487 0.537188 GATCTTGCCCGAGGAGTTCA 59.463 55.000 0.00 0.00 0.00 3.18
487 488 0.528684 CGATCTTGCCCGAGGAGTTC 60.529 60.000 0.00 0.00 0.00 3.01
488 489 1.258445 ACGATCTTGCCCGAGGAGTT 61.258 55.000 0.00 0.00 0.00 3.01
489 490 1.668101 GACGATCTTGCCCGAGGAGT 61.668 60.000 0.00 0.00 0.00 3.85
490 491 1.066587 GACGATCTTGCCCGAGGAG 59.933 63.158 0.00 0.00 0.00 3.69
491 492 0.970937 AAGACGATCTTGCCCGAGGA 60.971 55.000 0.00 0.00 34.98 3.71
492 493 0.528684 GAAGACGATCTTGCCCGAGG 60.529 60.000 5.20 0.00 36.73 4.63
493 494 0.528684 GGAAGACGATCTTGCCCGAG 60.529 60.000 5.20 0.00 38.66 4.63
494 495 1.254975 TGGAAGACGATCTTGCCCGA 61.255 55.000 13.59 0.00 43.12 5.14
495 496 0.807667 CTGGAAGACGATCTTGCCCG 60.808 60.000 13.59 0.00 43.12 6.13
496 497 1.092345 GCTGGAAGACGATCTTGCCC 61.092 60.000 13.59 7.33 43.12 5.36
497 498 0.391661 TGCTGGAAGACGATCTTGCC 60.392 55.000 13.59 10.60 43.12 4.52
498 499 1.005340 CTGCTGGAAGACGATCTTGC 58.995 55.000 10.69 10.69 43.90 4.01
499 500 1.649664 CCTGCTGGAAGACGATCTTG 58.350 55.000 2.92 0.00 36.73 3.02
500 501 0.539051 CCCTGCTGGAAGACGATCTT 59.461 55.000 11.88 0.00 39.87 2.40
501 502 1.965754 GCCCTGCTGGAAGACGATCT 61.966 60.000 11.88 0.00 34.07 2.75
502 503 1.522580 GCCCTGCTGGAAGACGATC 60.523 63.158 11.88 0.00 34.07 3.69
503 504 2.586792 GCCCTGCTGGAAGACGAT 59.413 61.111 11.88 0.00 34.07 3.73
504 505 3.706373 GGCCCTGCTGGAAGACGA 61.706 66.667 11.88 0.00 34.07 4.20
505 506 3.710722 AGGCCCTGCTGGAAGACG 61.711 66.667 11.88 0.00 34.07 4.18
506 507 2.045536 CAGGCCCTGCTGGAAGAC 60.046 66.667 11.88 0.00 34.07 3.01
507 508 3.333219 CCAGGCCCTGCTGGAAGA 61.333 66.667 11.88 0.00 43.08 2.87
508 509 3.333219 TCCAGGCCCTGCTGGAAG 61.333 66.667 11.88 0.00 45.68 3.46
520 521 2.895865 CTGCAGATGCGCTCCAGG 60.896 66.667 8.42 0.00 45.83 4.45
521 522 3.574445 GCTGCAGATGCGCTCCAG 61.574 66.667 20.43 8.80 45.83 3.86
522 523 4.091939 AGCTGCAGATGCGCTCCA 62.092 61.111 20.43 0.00 43.44 3.86
528 529 4.479993 ACGGGGAGCTGCAGATGC 62.480 66.667 20.43 18.03 42.50 3.91
529 530 2.513204 CACGGGGAGCTGCAGATG 60.513 66.667 20.43 0.81 0.00 2.90
530 531 4.479993 GCACGGGGAGCTGCAGAT 62.480 66.667 20.43 12.64 33.31 2.90
557 558 4.468689 GTAGGACCTGGCCACGGC 62.469 72.222 18.07 9.91 41.06 5.68
558 559 2.683933 AGTAGGACCTGGCCACGG 60.684 66.667 16.92 16.92 0.00 4.94
559 560 2.893398 GAGTAGGACCTGGCCACG 59.107 66.667 0.00 0.00 0.00 4.94
560 561 1.946475 GACGAGTAGGACCTGGCCAC 61.946 65.000 0.00 0.00 0.00 5.01
561 562 1.681327 GACGAGTAGGACCTGGCCA 60.681 63.158 4.71 4.71 0.00 5.36
562 563 2.424733 GGACGAGTAGGACCTGGCC 61.425 68.421 3.53 0.00 0.00 5.36
563 564 2.772691 CGGACGAGTAGGACCTGGC 61.773 68.421 3.53 0.00 0.00 4.85
564 565 2.119655 CCGGACGAGTAGGACCTGG 61.120 68.421 3.53 0.00 0.00 4.45
565 566 2.772691 GCCGGACGAGTAGGACCTG 61.773 68.421 5.05 0.00 0.00 4.00
566 567 2.439883 GCCGGACGAGTAGGACCT 60.440 66.667 5.05 0.00 0.00 3.85
596 597 3.345808 CACGTTGAGCACCACGGG 61.346 66.667 12.07 4.16 0.00 5.28
597 598 4.012895 GCACGTTGAGCACCACGG 62.013 66.667 12.07 3.01 0.00 4.94
598 599 4.012895 GGCACGTTGAGCACCACG 62.013 66.667 6.22 6.22 0.00 4.94
630 631 1.429463 CTTGAAGAACCCGAAGACCG 58.571 55.000 0.00 0.00 38.18 4.79
631 632 1.346722 TCCTTGAAGAACCCGAAGACC 59.653 52.381 0.00 0.00 0.00 3.85
632 633 2.224209 TGTCCTTGAAGAACCCGAAGAC 60.224 50.000 0.00 0.00 0.00 3.01
633 634 2.043992 TGTCCTTGAAGAACCCGAAGA 58.956 47.619 0.00 0.00 0.00 2.87
634 635 2.543777 TGTCCTTGAAGAACCCGAAG 57.456 50.000 0.00 0.00 0.00 3.79
635 636 2.436542 TCTTGTCCTTGAAGAACCCGAA 59.563 45.455 0.00 0.00 0.00 4.30
636 637 2.043992 TCTTGTCCTTGAAGAACCCGA 58.956 47.619 0.00 0.00 0.00 5.14
637 638 2.543777 TCTTGTCCTTGAAGAACCCG 57.456 50.000 0.00 0.00 0.00 5.28
638 639 3.149981 CCTTCTTGTCCTTGAAGAACCC 58.850 50.000 0.00 0.00 41.38 4.11
639 640 4.068599 CTCCTTCTTGTCCTTGAAGAACC 58.931 47.826 0.00 0.00 41.38 3.62
640 641 4.709250 ACTCCTTCTTGTCCTTGAAGAAC 58.291 43.478 0.00 0.00 41.38 3.01
641 642 4.501571 CGACTCCTTCTTGTCCTTGAAGAA 60.502 45.833 0.00 0.00 41.38 2.52
642 643 3.005897 CGACTCCTTCTTGTCCTTGAAGA 59.994 47.826 0.00 0.00 41.38 2.87
643 644 3.321497 CGACTCCTTCTTGTCCTTGAAG 58.679 50.000 0.00 0.00 39.32 3.02
644 645 2.037251 CCGACTCCTTCTTGTCCTTGAA 59.963 50.000 0.00 0.00 0.00 2.69
645 646 1.618837 CCGACTCCTTCTTGTCCTTGA 59.381 52.381 0.00 0.00 0.00 3.02
646 647 1.941668 GCCGACTCCTTCTTGTCCTTG 60.942 57.143 0.00 0.00 0.00 3.61
647 648 0.321996 GCCGACTCCTTCTTGTCCTT 59.678 55.000 0.00 0.00 0.00 3.36
648 649 1.878656 CGCCGACTCCTTCTTGTCCT 61.879 60.000 0.00 0.00 0.00 3.85
649 650 1.446272 CGCCGACTCCTTCTTGTCC 60.446 63.158 0.00 0.00 0.00 4.02
650 651 1.446272 CCGCCGACTCCTTCTTGTC 60.446 63.158 0.00 0.00 0.00 3.18
651 652 2.657237 CCGCCGACTCCTTCTTGT 59.343 61.111 0.00 0.00 0.00 3.16
652 653 2.815647 GCCGCCGACTCCTTCTTG 60.816 66.667 0.00 0.00 0.00 3.02
653 654 4.083862 GGCCGCCGACTCCTTCTT 62.084 66.667 0.00 0.00 0.00 2.52
655 656 4.821589 CTGGCCGCCGACTCCTTC 62.822 72.222 4.58 0.00 0.00 3.46
687 688 3.812019 CACCTCCGGACCTCGTCG 61.812 72.222 0.00 0.00 37.11 5.12
688 689 3.450115 CCACCTCCGGACCTCGTC 61.450 72.222 0.00 0.00 37.11 4.20
691 692 3.775654 CAGCCACCTCCGGACCTC 61.776 72.222 0.00 0.00 0.00 3.85
694 695 4.767255 CTGCAGCCACCTCCGGAC 62.767 72.222 0.00 0.00 0.00 4.79
706 707 4.034258 CACAACCCGCTGCTGCAG 62.034 66.667 24.80 24.80 39.64 4.41
709 710 3.663176 CACCACAACCCGCTGCTG 61.663 66.667 0.00 0.00 0.00 4.41
710 711 2.697147 ATTCACCACAACCCGCTGCT 62.697 55.000 0.00 0.00 0.00 4.24
711 712 2.268076 ATTCACCACAACCCGCTGC 61.268 57.895 0.00 0.00 0.00 5.25
712 713 1.580942 CATTCACCACAACCCGCTG 59.419 57.895 0.00 0.00 0.00 5.18
713 714 1.603455 CCATTCACCACAACCCGCT 60.603 57.895 0.00 0.00 0.00 5.52
714 715 1.175983 TTCCATTCACCACAACCCGC 61.176 55.000 0.00 0.00 0.00 6.13
715 716 1.269448 CTTTCCATTCACCACAACCCG 59.731 52.381 0.00 0.00 0.00 5.28
716 717 1.618343 CCTTTCCATTCACCACAACCC 59.382 52.381 0.00 0.00 0.00 4.11
717 718 2.558359 CTCCTTTCCATTCACCACAACC 59.442 50.000 0.00 0.00 0.00 3.77
718 719 2.558359 CCTCCTTTCCATTCACCACAAC 59.442 50.000 0.00 0.00 0.00 3.32
719 720 2.445145 TCCTCCTTTCCATTCACCACAA 59.555 45.455 0.00 0.00 0.00 3.33
720 721 2.040278 CTCCTCCTTTCCATTCACCACA 59.960 50.000 0.00 0.00 0.00 4.17
721 722 2.619074 CCTCCTCCTTTCCATTCACCAC 60.619 54.545 0.00 0.00 0.00 4.16
722 723 1.635487 CCTCCTCCTTTCCATTCACCA 59.365 52.381 0.00 0.00 0.00 4.17
723 724 1.916181 TCCTCCTCCTTTCCATTCACC 59.084 52.381 0.00 0.00 0.00 4.02
724 725 2.682269 GCTCCTCCTCCTTTCCATTCAC 60.682 54.545 0.00 0.00 0.00 3.18
725 726 1.561542 GCTCCTCCTCCTTTCCATTCA 59.438 52.381 0.00 0.00 0.00 2.57
726 727 1.561542 TGCTCCTCCTCCTTTCCATTC 59.438 52.381 0.00 0.00 0.00 2.67
727 728 1.563410 CTGCTCCTCCTCCTTTCCATT 59.437 52.381 0.00 0.00 0.00 3.16
728 729 1.211456 CTGCTCCTCCTCCTTTCCAT 58.789 55.000 0.00 0.00 0.00 3.41
729 730 0.117140 TCTGCTCCTCCTCCTTTCCA 59.883 55.000 0.00 0.00 0.00 3.53
730 731 0.829990 CTCTGCTCCTCCTCCTTTCC 59.170 60.000 0.00 0.00 0.00 3.13
731 732 0.829990 CCTCTGCTCCTCCTCCTTTC 59.170 60.000 0.00 0.00 0.00 2.62
732 733 0.415429 TCCTCTGCTCCTCCTCCTTT 59.585 55.000 0.00 0.00 0.00 3.11
733 734 0.032217 CTCCTCTGCTCCTCCTCCTT 60.032 60.000 0.00 0.00 0.00 3.36
734 735 0.923729 TCTCCTCTGCTCCTCCTCCT 60.924 60.000 0.00 0.00 0.00 3.69
735 736 0.468029 CTCTCCTCTGCTCCTCCTCC 60.468 65.000 0.00 0.00 0.00 4.30
736 737 0.550914 TCTCTCCTCTGCTCCTCCTC 59.449 60.000 0.00 0.00 0.00 3.71
737 738 0.258774 GTCTCTCCTCTGCTCCTCCT 59.741 60.000 0.00 0.00 0.00 3.69
738 739 0.033601 TGTCTCTCCTCTGCTCCTCC 60.034 60.000 0.00 0.00 0.00 4.30
739 740 1.064758 TCTGTCTCTCCTCTGCTCCTC 60.065 57.143 0.00 0.00 0.00 3.71
740 741 0.998928 TCTGTCTCTCCTCTGCTCCT 59.001 55.000 0.00 0.00 0.00 3.69
741 742 1.102978 GTCTGTCTCTCCTCTGCTCC 58.897 60.000 0.00 0.00 0.00 4.70
742 743 0.732571 CGTCTGTCTCTCCTCTGCTC 59.267 60.000 0.00 0.00 0.00 4.26
743 744 0.326595 TCGTCTGTCTCTCCTCTGCT 59.673 55.000 0.00 0.00 0.00 4.24
744 745 0.732571 CTCGTCTGTCTCTCCTCTGC 59.267 60.000 0.00 0.00 0.00 4.26
745 746 2.279741 CTCTCGTCTGTCTCTCCTCTG 58.720 57.143 0.00 0.00 0.00 3.35
746 747 1.209504 CCTCTCGTCTGTCTCTCCTCT 59.790 57.143 0.00 0.00 0.00 3.69
747 748 1.663695 CCTCTCGTCTGTCTCTCCTC 58.336 60.000 0.00 0.00 0.00 3.71
748 749 0.254747 CCCTCTCGTCTGTCTCTCCT 59.745 60.000 0.00 0.00 0.00 3.69
749 750 0.034863 ACCCTCTCGTCTGTCTCTCC 60.035 60.000 0.00 0.00 0.00 3.71
750 751 1.091537 CACCCTCTCGTCTGTCTCTC 58.908 60.000 0.00 0.00 0.00 3.20
751 752 0.322997 CCACCCTCTCGTCTGTCTCT 60.323 60.000 0.00 0.00 0.00 3.10
752 753 1.316706 CCCACCCTCTCGTCTGTCTC 61.317 65.000 0.00 0.00 0.00 3.36
753 754 1.304547 CCCACCCTCTCGTCTGTCT 60.305 63.158 0.00 0.00 0.00 3.41
754 755 1.304217 TCCCACCCTCTCGTCTGTC 60.304 63.158 0.00 0.00 0.00 3.51
755 756 1.304547 CTCCCACCCTCTCGTCTGT 60.305 63.158 0.00 0.00 0.00 3.41
756 757 2.055042 CCTCCCACCCTCTCGTCTG 61.055 68.421 0.00 0.00 0.00 3.51
757 758 2.360980 CCTCCCACCCTCTCGTCT 59.639 66.667 0.00 0.00 0.00 4.18
758 759 2.760385 CCCTCCCACCCTCTCGTC 60.760 72.222 0.00 0.00 0.00 4.20
759 760 3.273654 TCCCTCCCACCCTCTCGT 61.274 66.667 0.00 0.00 0.00 4.18
760 761 2.760385 GTCCCTCCCACCCTCTCG 60.760 72.222 0.00 0.00 0.00 4.04
761 762 1.229529 TTGTCCCTCCCACCCTCTC 60.230 63.158 0.00 0.00 0.00 3.20
762 763 1.539124 GTTGTCCCTCCCACCCTCT 60.539 63.158 0.00 0.00 0.00 3.69
763 764 2.955881 CGTTGTCCCTCCCACCCTC 61.956 68.421 0.00 0.00 0.00 4.30
764 765 2.928396 CGTTGTCCCTCCCACCCT 60.928 66.667 0.00 0.00 0.00 4.34
765 766 3.246880 ACGTTGTCCCTCCCACCC 61.247 66.667 0.00 0.00 0.00 4.61
766 767 2.032071 CACGTTGTCCCTCCCACC 59.968 66.667 0.00 0.00 0.00 4.61
767 768 1.597027 CACACGTTGTCCCTCCCAC 60.597 63.158 0.00 0.00 0.00 4.61
768 769 1.338890 TTCACACGTTGTCCCTCCCA 61.339 55.000 0.00 0.00 0.00 4.37
769 770 0.179040 TTTCACACGTTGTCCCTCCC 60.179 55.000 0.00 0.00 0.00 4.30
770 771 1.892209 ATTTCACACGTTGTCCCTCC 58.108 50.000 0.00 0.00 0.00 4.30
771 772 3.982576 AAATTTCACACGTTGTCCCTC 57.017 42.857 0.00 0.00 0.00 4.30
772 773 4.729227 AAAAATTTCACACGTTGTCCCT 57.271 36.364 0.00 0.00 0.00 4.20
790 791 5.855740 AATTTTAGGACGTGGGTGAAAAA 57.144 34.783 0.00 0.00 0.00 1.94
791 792 5.855740 AAATTTTAGGACGTGGGTGAAAA 57.144 34.783 0.00 0.00 0.00 2.29
792 793 5.505985 CGAAAATTTTAGGACGTGGGTGAAA 60.506 40.000 2.75 0.00 0.00 2.69
793 794 4.023878 CGAAAATTTTAGGACGTGGGTGAA 60.024 41.667 2.75 0.00 0.00 3.18
794 795 3.499157 CGAAAATTTTAGGACGTGGGTGA 59.501 43.478 2.75 0.00 0.00 4.02
795 796 3.817238 CGAAAATTTTAGGACGTGGGTG 58.183 45.455 2.75 0.00 0.00 4.61
796 797 2.227149 GCGAAAATTTTAGGACGTGGGT 59.773 45.455 12.20 0.00 0.00 4.51
797 798 2.486592 AGCGAAAATTTTAGGACGTGGG 59.513 45.455 12.20 0.00 0.00 4.61
798 799 3.488489 CAGCGAAAATTTTAGGACGTGG 58.512 45.455 12.20 2.15 0.00 4.94
799 800 3.488489 CCAGCGAAAATTTTAGGACGTG 58.512 45.455 12.20 8.43 0.00 4.49
800 801 2.095415 GCCAGCGAAAATTTTAGGACGT 60.095 45.455 12.20 0.00 0.00 4.34
801 802 2.095466 TGCCAGCGAAAATTTTAGGACG 60.095 45.455 12.20 8.82 0.00 4.79
802 803 3.501950 CTGCCAGCGAAAATTTTAGGAC 58.498 45.455 12.20 6.13 0.00 3.85
803 804 2.094752 GCTGCCAGCGAAAATTTTAGGA 60.095 45.455 0.00 0.00 0.00 2.94
804 805 2.262211 GCTGCCAGCGAAAATTTTAGG 58.738 47.619 0.00 9.23 0.00 2.69
805 806 2.262211 GGCTGCCAGCGAAAATTTTAG 58.738 47.619 15.17 4.96 43.62 1.85
806 807 1.067213 GGGCTGCCAGCGAAAATTTTA 60.067 47.619 22.05 0.00 43.62 1.52
807 808 0.320683 GGGCTGCCAGCGAAAATTTT 60.321 50.000 22.05 2.28 43.62 1.82
808 809 1.293179 GGGCTGCCAGCGAAAATTT 59.707 52.632 22.05 0.00 43.62 1.82
809 810 2.649129 GGGGCTGCCAGCGAAAATT 61.649 57.895 22.05 0.00 43.62 1.82
810 811 3.070576 GGGGCTGCCAGCGAAAAT 61.071 61.111 22.05 0.00 43.62 1.82
811 812 4.284550 AGGGGCTGCCAGCGAAAA 62.285 61.111 22.05 0.00 43.62 2.29
812 813 4.722700 GAGGGGCTGCCAGCGAAA 62.723 66.667 22.05 0.00 43.62 3.46
816 817 3.376918 GTTTGAGGGGCTGCCAGC 61.377 66.667 22.05 8.55 41.46 4.85
817 818 3.058160 CGTTTGAGGGGCTGCCAG 61.058 66.667 22.05 0.00 0.00 4.85
818 819 4.659172 CCGTTTGAGGGGCTGCCA 62.659 66.667 22.05 0.00 0.00 4.92
823 824 2.077821 TTTTTCGCCGTTTGAGGGGC 62.078 55.000 0.00 0.00 45.95 5.80
824 825 2.034607 TTTTTCGCCGTTTGAGGGG 58.965 52.632 0.00 0.00 44.59 4.79
840 841 2.485814 GAGCCTCTCAGAACGCATTTTT 59.514 45.455 0.00 0.00 0.00 1.94
841 842 2.079925 GAGCCTCTCAGAACGCATTTT 58.920 47.619 0.00 0.00 0.00 1.82
842 843 1.002430 TGAGCCTCTCAGAACGCATTT 59.998 47.619 0.00 0.00 35.39 2.32
843 844 0.610174 TGAGCCTCTCAGAACGCATT 59.390 50.000 0.00 0.00 35.39 3.56
844 845 0.610174 TTGAGCCTCTCAGAACGCAT 59.390 50.000 0.00 0.00 41.75 4.73
845 846 0.319900 GTTGAGCCTCTCAGAACGCA 60.320 55.000 0.00 0.00 41.75 5.24
846 847 1.347817 CGTTGAGCCTCTCAGAACGC 61.348 60.000 7.75 0.00 41.75 4.84
847 848 0.734253 CCGTTGAGCCTCTCAGAACG 60.734 60.000 11.81 11.81 41.75 3.95
848 849 1.016653 GCCGTTGAGCCTCTCAGAAC 61.017 60.000 0.00 0.00 41.75 3.01
849 850 1.188219 AGCCGTTGAGCCTCTCAGAA 61.188 55.000 0.00 0.00 41.75 3.02
850 851 1.607756 AGCCGTTGAGCCTCTCAGA 60.608 57.895 0.00 0.00 41.75 3.27
851 852 1.447489 CAGCCGTTGAGCCTCTCAG 60.447 63.158 0.00 0.00 41.75 3.35
852 853 2.659016 CAGCCGTTGAGCCTCTCA 59.341 61.111 0.00 0.00 38.87 3.27
853 854 2.125350 CCAGCCGTTGAGCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
854 855 2.604686 TCCAGCCGTTGAGCCTCT 60.605 61.111 0.00 0.00 0.00 3.69
855 856 1.965754 ATCTCCAGCCGTTGAGCCTC 61.966 60.000 0.00 0.00 0.00 4.70
856 857 1.992277 ATCTCCAGCCGTTGAGCCT 60.992 57.895 0.00 0.00 0.00 4.58
857 858 1.817099 CATCTCCAGCCGTTGAGCC 60.817 63.158 0.00 0.00 0.00 4.70
858 859 2.467826 GCATCTCCAGCCGTTGAGC 61.468 63.158 0.00 0.00 0.00 4.26
859 860 0.809241 GAGCATCTCCAGCCGTTGAG 60.809 60.000 0.00 0.00 0.00 3.02
860 861 1.219124 GAGCATCTCCAGCCGTTGA 59.781 57.895 0.00 0.00 0.00 3.18
861 862 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
872 873 2.698855 TGGCCAAGACTTAGAGCATC 57.301 50.000 0.61 0.00 0.00 3.91
873 874 3.439857 TTTGGCCAAGACTTAGAGCAT 57.560 42.857 19.48 0.00 0.00 3.79
874 875 2.949177 TTTGGCCAAGACTTAGAGCA 57.051 45.000 19.48 0.00 0.00 4.26
875 876 3.615155 AGATTTGGCCAAGACTTAGAGC 58.385 45.455 19.48 4.61 0.00 4.09
876 877 5.248640 TGAAGATTTGGCCAAGACTTAGAG 58.751 41.667 27.29 0.00 0.00 2.43
877 878 5.241403 TGAAGATTTGGCCAAGACTTAGA 57.759 39.130 27.29 18.76 0.00 2.10
878 879 4.397417 CCTGAAGATTTGGCCAAGACTTAG 59.603 45.833 27.29 23.17 0.00 2.18
879 880 4.202567 ACCTGAAGATTTGGCCAAGACTTA 60.203 41.667 27.29 12.94 0.00 2.24
880 881 3.160269 CCTGAAGATTTGGCCAAGACTT 58.840 45.455 27.47 27.47 0.00 3.01
881 882 2.108952 ACCTGAAGATTTGGCCAAGACT 59.891 45.455 19.48 18.05 0.00 3.24
882 883 2.229784 CACCTGAAGATTTGGCCAAGAC 59.770 50.000 19.48 16.09 0.00 3.01
883 884 2.517959 CACCTGAAGATTTGGCCAAGA 58.482 47.619 19.48 10.42 0.00 3.02
884 885 1.547372 CCACCTGAAGATTTGGCCAAG 59.453 52.381 19.48 6.92 0.00 3.61
885 886 1.133199 ACCACCTGAAGATTTGGCCAA 60.133 47.619 16.05 16.05 31.76 4.52
886 887 0.482446 ACCACCTGAAGATTTGGCCA 59.518 50.000 0.00 0.00 31.76 5.36
887 888 0.890683 CACCACCTGAAGATTTGGCC 59.109 55.000 0.00 0.00 31.76 5.36
888 889 0.244721 GCACCACCTGAAGATTTGGC 59.755 55.000 0.00 0.00 31.76 4.52
889 890 1.915141 AGCACCACCTGAAGATTTGG 58.085 50.000 0.00 0.00 35.06 3.28
890 891 3.012518 CCTAGCACCACCTGAAGATTTG 58.987 50.000 0.00 0.00 0.00 2.32
891 892 2.644798 ACCTAGCACCACCTGAAGATTT 59.355 45.455 0.00 0.00 0.00 2.17
892 893 2.237392 GACCTAGCACCACCTGAAGATT 59.763 50.000 0.00 0.00 0.00 2.40
893 894 1.834263 GACCTAGCACCACCTGAAGAT 59.166 52.381 0.00 0.00 0.00 2.40
894 895 1.203187 AGACCTAGCACCACCTGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
895 896 1.270907 AGACCTAGCACCACCTGAAG 58.729 55.000 0.00 0.00 0.00 3.02
896 897 2.176889 GTAGACCTAGCACCACCTGAA 58.823 52.381 0.00 0.00 0.00 3.02
897 898 1.358103 AGTAGACCTAGCACCACCTGA 59.642 52.381 0.00 0.00 0.00 3.86
898 899 1.853963 AGTAGACCTAGCACCACCTG 58.146 55.000 0.00 0.00 0.00 4.00
899 900 2.458620 GAAGTAGACCTAGCACCACCT 58.541 52.381 0.00 0.00 0.00 4.00
900 901 1.481363 GGAAGTAGACCTAGCACCACC 59.519 57.143 0.00 0.00 0.00 4.61
901 902 2.094130 GTGGAAGTAGACCTAGCACCAC 60.094 54.545 0.00 0.00 39.38 4.16
902 903 2.176889 GTGGAAGTAGACCTAGCACCA 58.823 52.381 0.00 0.00 0.00 4.17
903 904 2.094130 GTGTGGAAGTAGACCTAGCACC 60.094 54.545 0.00 0.00 0.00 5.01
904 905 2.826725 AGTGTGGAAGTAGACCTAGCAC 59.173 50.000 0.00 0.00 0.00 4.40
905 906 3.170991 AGTGTGGAAGTAGACCTAGCA 57.829 47.619 0.00 0.00 0.00 3.49
906 907 4.538746 AAAGTGTGGAAGTAGACCTAGC 57.461 45.455 0.00 0.00 0.00 3.42
907 908 6.837471 AGTAAAGTGTGGAAGTAGACCTAG 57.163 41.667 0.00 0.00 0.00 3.02
908 909 7.607615 AAAGTAAAGTGTGGAAGTAGACCTA 57.392 36.000 0.00 0.00 0.00 3.08
909 910 6.496144 AAAGTAAAGTGTGGAAGTAGACCT 57.504 37.500 0.00 0.00 0.00 3.85
910 911 6.990939 AGAAAAGTAAAGTGTGGAAGTAGACC 59.009 38.462 0.00 0.00 0.00 3.85
911 912 8.434733 AAGAAAAGTAAAGTGTGGAAGTAGAC 57.565 34.615 0.00 0.00 0.00 2.59
912 913 9.106070 GAAAGAAAAGTAAAGTGTGGAAGTAGA 57.894 33.333 0.00 0.00 0.00 2.59
913 914 9.110502 AGAAAGAAAAGTAAAGTGTGGAAGTAG 57.889 33.333 0.00 0.00 0.00 2.57
914 915 9.457436 AAGAAAGAAAAGTAAAGTGTGGAAGTA 57.543 29.630 0.00 0.00 0.00 2.24
915 916 7.939784 AGAAAGAAAAGTAAAGTGTGGAAGT 57.060 32.000 0.00 0.00 0.00 3.01
916 917 9.717892 GTAAGAAAGAAAAGTAAAGTGTGGAAG 57.282 33.333 0.00 0.00 0.00 3.46
917 918 8.392612 CGTAAGAAAGAAAAGTAAAGTGTGGAA 58.607 33.333 0.00 0.00 43.02 3.53
918 919 7.912383 CGTAAGAAAGAAAAGTAAAGTGTGGA 58.088 34.615 0.00 0.00 43.02 4.02
1012 1013 1.619332 GAGGAGGAGGACGTGTTTCTT 59.381 52.381 0.00 0.00 0.00 2.52
1143 1150 2.682136 TCCTCCATGGCGAACGGA 60.682 61.111 6.96 4.72 35.26 4.69
1171 1178 2.426023 GGTGAGGTGGCAAGACGT 59.574 61.111 0.00 0.00 0.00 4.34
1905 1915 1.221021 CGGCTCTAACCCAACCTCC 59.779 63.158 0.00 0.00 0.00 4.30
1954 1964 1.537135 CCGAGCCTCTAAGCTACAAGC 60.537 57.143 0.00 0.00 45.15 4.01
1958 1968 0.312729 GAGCCGAGCCTCTAAGCTAC 59.687 60.000 1.38 0.00 45.15 3.58
1971 1981 0.896940 AGTACCGAGGTTTGAGCCGA 60.897 55.000 0.00 0.00 0.00 5.54
2014 2024 3.003689 CGGTTAGGCTTTAGCAATCCATG 59.996 47.826 3.88 0.00 44.36 3.66
2234 2248 1.051008 TGCTTTGCAGACTCCAGAGA 58.949 50.000 0.70 0.00 33.32 3.10
2249 2263 2.102578 ACAAGACTTGCCAACTTGCTT 58.897 42.857 15.24 0.00 42.93 3.91
2256 2270 2.023673 CACAGGAACAAGACTTGCCAA 58.976 47.619 15.24 0.00 0.00 4.52
2266 2280 6.982852 TGTTAGAAAAACAACACAGGAACAA 58.017 32.000 0.00 0.00 29.93 2.83
2358 2455 9.139174 GATGACGACCAAAACATATTCAAATTT 57.861 29.630 0.00 0.00 0.00 1.82
2363 2460 7.327975 ACTAGATGACGACCAAAACATATTCA 58.672 34.615 0.00 0.00 0.00 2.57
2392 2491 4.144297 ACTGTGCCATGCTTTCTTTCTTA 58.856 39.130 0.00 0.00 0.00 2.10
2398 2497 1.806542 CGTAACTGTGCCATGCTTTCT 59.193 47.619 0.00 0.00 0.00 2.52
2399 2498 1.804151 TCGTAACTGTGCCATGCTTTC 59.196 47.619 0.00 0.00 0.00 2.62
2400 2499 1.890876 TCGTAACTGTGCCATGCTTT 58.109 45.000 0.00 0.00 0.00 3.51
2401 2500 1.890876 TTCGTAACTGTGCCATGCTT 58.109 45.000 0.00 0.00 0.00 3.91
2621 2725 2.237392 ACTACCAGGGAAGCTGTTGATC 59.763 50.000 0.00 0.00 0.00 2.92
2709 2818 1.501582 GCCTGGAACACTATCCTCCT 58.498 55.000 0.00 0.00 40.35 3.69
2771 2901 5.103430 TCCCCTTTCTCTTTCCCTTTTGTTA 60.103 40.000 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.