Multiple sequence alignment - TraesCS7D01G184800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G184800 chr7D 100.000 3140 0 0 1 3140 138194908 138191769 0.000000e+00 5799
1 TraesCS7D01G184800 chr7D 85.106 705 85 8 1 689 511647748 511648448 0.000000e+00 702
2 TraesCS7D01G184800 chr7A 91.175 2561 182 15 1 2521 138165103 138162547 0.000000e+00 3437
3 TraesCS7D01G184800 chr7A 83.789 549 51 20 2525 3063 138162436 138161916 1.310000e-133 486
4 TraesCS7D01G184800 chr7B 93.175 1890 100 14 934 2802 103573059 103571178 0.000000e+00 2748
5 TraesCS7D01G184800 chr7B 82.950 739 106 13 4 724 544408665 544409401 0.000000e+00 649
6 TraesCS7D01G184800 chr7B 83.740 123 10 3 777 899 103574572 103574460 1.190000e-19 108
7 TraesCS7D01G184800 chr6D 83.665 704 98 10 1 692 471073647 471074345 0.000000e+00 647
8 TraesCS7D01G184800 chr2B 82.923 732 100 17 1 724 491707790 491707076 1.230000e-178 636
9 TraesCS7D01G184800 chr2B 82.410 722 112 11 5 714 473342629 473343347 1.600000e-172 616
10 TraesCS7D01G184800 chr4A 82.782 726 104 12 67 778 595822877 595823595 2.060000e-176 628
11 TraesCS7D01G184800 chr1D 83.238 698 101 11 1 692 303021097 303020410 7.390000e-176 627
12 TraesCS7D01G184800 chr5D 80.301 797 130 14 4 781 526660909 526660121 7.550000e-161 577
13 TraesCS7D01G184800 chr1B 78.531 354 48 24 1067 1403 683538591 683538249 1.140000e-49 207
14 TraesCS7D01G184800 chr6B 84.925 199 22 6 1067 1258 41410317 41410120 8.890000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G184800 chr7D 138191769 138194908 3139 True 5799.0 5799 100.0000 1 3140 1 chr7D.!!$R1 3139
1 TraesCS7D01G184800 chr7D 511647748 511648448 700 False 702.0 702 85.1060 1 689 1 chr7D.!!$F1 688
2 TraesCS7D01G184800 chr7A 138161916 138165103 3187 True 1961.5 3437 87.4820 1 3063 2 chr7A.!!$R1 3062
3 TraesCS7D01G184800 chr7B 103571178 103574572 3394 True 1428.0 2748 88.4575 777 2802 2 chr7B.!!$R1 2025
4 TraesCS7D01G184800 chr7B 544408665 544409401 736 False 649.0 649 82.9500 4 724 1 chr7B.!!$F1 720
5 TraesCS7D01G184800 chr6D 471073647 471074345 698 False 647.0 647 83.6650 1 692 1 chr6D.!!$F1 691
6 TraesCS7D01G184800 chr2B 491707076 491707790 714 True 636.0 636 82.9230 1 724 1 chr2B.!!$R1 723
7 TraesCS7D01G184800 chr2B 473342629 473343347 718 False 616.0 616 82.4100 5 714 1 chr2B.!!$F1 709
8 TraesCS7D01G184800 chr4A 595822877 595823595 718 False 628.0 628 82.7820 67 778 1 chr4A.!!$F1 711
9 TraesCS7D01G184800 chr1D 303020410 303021097 687 True 627.0 627 83.2380 1 692 1 chr1D.!!$R1 691
10 TraesCS7D01G184800 chr5D 526660121 526660909 788 True 577.0 577 80.3010 4 781 1 chr5D.!!$R1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 450 0.242825 GGACATCGACGACAAGGACA 59.757 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 3761 0.478072 ACTGGAAATGGCACTCCACA 59.522 50.0 14.56 0.0 46.92 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 3.229156 AATGCCCGACCGACGAACA 62.229 57.895 0.00 2.49 45.77 3.18
55 57 1.996786 GCCCGACCGACGAACAGATA 61.997 60.000 0.00 0.00 45.77 1.98
62 64 1.332686 CCGACGAACAGATATGTCCGA 59.667 52.381 5.99 0.00 0.00 4.55
148 155 4.201891 CGGCATCTGAAAAATCTCTCCTTG 60.202 45.833 0.00 0.00 0.00 3.61
167 175 4.402528 CCATCACCGGTCGGGCAA 62.403 66.667 2.59 0.00 40.62 4.52
188 196 5.126067 CAAACTATGAGTCCCATCGGAAAT 58.874 41.667 0.00 0.00 40.92 2.17
301 317 1.222936 CGCAGAGGAGGAAGCCATT 59.777 57.895 0.00 0.00 0.00 3.16
314 330 4.191950 CCATTCGCGCCCGCATTT 62.192 61.111 13.42 0.00 42.06 2.32
331 347 3.499157 GCATTTTGAAGAAATGGCAGCAA 59.501 39.130 11.97 0.00 37.92 3.91
342 358 2.721231 GCAGCAAAGGAACACGCA 59.279 55.556 0.00 0.00 0.00 5.24
394 410 4.101448 GCCATGGACGGACTGCCT 62.101 66.667 18.40 0.00 0.00 4.75
396 412 2.362369 CCATGGACGGACTGCCTCT 61.362 63.158 5.56 0.00 0.00 3.69
399 415 1.608717 ATGGACGGACTGCCTCTGAC 61.609 60.000 0.00 0.00 0.00 3.51
416 444 1.642037 GACGGAGGACATCGACGACA 61.642 60.000 0.00 0.00 0.00 4.35
421 449 0.526662 AGGACATCGACGACAAGGAC 59.473 55.000 0.00 0.00 0.00 3.85
422 450 0.242825 GGACATCGACGACAAGGACA 59.757 55.000 0.00 0.00 0.00 4.02
457 485 2.832201 CCCGACTCGGTCCCTACC 60.832 72.222 16.35 0.00 46.80 3.18
492 520 1.080705 CTTCCGCGAGAAAGACGGT 60.081 57.895 8.23 0.00 46.92 4.83
559 587 5.879223 CCATAGCCAAACATGCCAAATTTTA 59.121 36.000 0.00 0.00 0.00 1.52
587 615 4.403113 TCCGATGGCATGTTTAGTGTAGTA 59.597 41.667 3.81 0.00 0.00 1.82
611 639 1.146358 GGAGTAGCCGAACGATGTGC 61.146 60.000 0.00 0.00 0.00 4.57
638 669 6.150809 TGCATTGACATAGTTGCATGAGTTTA 59.849 34.615 0.00 0.00 39.98 2.01
696 729 8.846943 ATATGGATTGCATTATTTGAGACGTA 57.153 30.769 0.00 0.00 0.00 3.57
743 776 3.732892 CGTGTCCGCGGGCATTTT 61.733 61.111 37.75 0.00 0.00 1.82
744 777 2.648454 GTGTCCGCGGGCATTTTT 59.352 55.556 37.75 0.00 0.00 1.94
754 791 1.203523 CGGGCATTTTTCCGGATTTGA 59.796 47.619 4.15 0.00 42.32 2.69
838 875 6.500684 TCATCTGTTGGAGTTAGCATTTTC 57.499 37.500 0.00 0.00 0.00 2.29
909 1125 2.893895 ATCATCAGCGGCACAGCG 60.894 61.111 1.45 0.00 43.00 5.18
1059 2471 4.135153 CGCACACCCTCCCTCTCG 62.135 72.222 0.00 0.00 0.00 4.04
1637 3049 1.077930 TCCCCGAGTACGTCCAGAG 60.078 63.158 0.00 0.00 37.88 3.35
1647 3059 2.970639 GTCCAGAGTGCCGTGCTA 59.029 61.111 0.00 0.00 0.00 3.49
1695 3107 3.222603 GGATTCCCCAATGTTTCGCTAT 58.777 45.455 0.00 0.00 34.14 2.97
2016 3428 7.768120 CCTGAGCTTGACTTCTATTCTATTGTT 59.232 37.037 0.00 0.00 0.00 2.83
2019 3431 6.881065 AGCTTGACTTCTATTCTATTGTTGCA 59.119 34.615 0.00 0.00 0.00 4.08
2022 3434 9.371136 CTTGACTTCTATTCTATTGTTGCACTA 57.629 33.333 0.00 0.00 0.00 2.74
2088 3500 0.680921 GTATTCCAGGCCTTGCTGCA 60.681 55.000 0.00 0.00 0.00 4.41
2148 3560 7.553881 TGAAGTTTCTACCTGAAAAGACAAG 57.446 36.000 0.00 0.00 45.10 3.16
2250 3662 0.114364 ACCCCCTTGACCCATGTTTC 59.886 55.000 0.00 0.00 0.00 2.78
2258 3670 4.475944 CTTGACCCATGTTTCGAATGTTC 58.524 43.478 0.00 0.00 0.00 3.18
2260 3672 4.078537 TGACCCATGTTTCGAATGTTCAT 58.921 39.130 0.00 0.00 0.00 2.57
2279 3691 5.628797 TCATCAGTTTGCTATGGGTGATA 57.371 39.130 0.00 0.00 0.00 2.15
2280 3692 5.368145 TCATCAGTTTGCTATGGGTGATAC 58.632 41.667 0.00 0.00 0.00 2.24
2290 3702 4.809426 GCTATGGGTGATACTGTGTAACAC 59.191 45.833 8.85 8.85 45.67 3.32
2293 3705 1.997606 GGTGATACTGTGTAACACCGC 59.002 52.381 17.13 1.77 45.67 5.68
2315 3727 4.736759 GCCTAGTTAACGAATAGCAGAGCA 60.737 45.833 0.00 0.00 0.00 4.26
2318 3730 4.566004 AGTTAACGAATAGCAGAGCAACA 58.434 39.130 0.00 0.00 0.00 3.33
2319 3731 4.994852 AGTTAACGAATAGCAGAGCAACAA 59.005 37.500 0.00 0.00 0.00 2.83
2332 3744 3.762288 AGAGCAACAAATGTGATCAGCAT 59.238 39.130 0.00 0.00 0.00 3.79
2342 3754 7.871973 ACAAATGTGATCAGCATCTAGATAGAC 59.128 37.037 4.54 0.00 34.72 2.59
2349 3761 7.399478 TGATCAGCATCTAGATAGACATGGATT 59.601 37.037 4.54 0.00 34.72 3.01
2376 3796 1.894466 TGCCATTTCCAGTGAACATGG 59.106 47.619 0.00 9.11 39.53 3.66
2387 3807 8.821686 TTCCAGTGAACATGGTTGATTTATAT 57.178 30.769 0.00 0.00 39.01 0.86
2388 3808 8.224389 TCCAGTGAACATGGTTGATTTATATG 57.776 34.615 0.00 0.00 39.01 1.78
2389 3809 6.919662 CCAGTGAACATGGTTGATTTATATGC 59.080 38.462 0.00 0.00 32.85 3.14
2390 3810 7.416551 CCAGTGAACATGGTTGATTTATATGCA 60.417 37.037 0.00 0.00 32.85 3.96
2422 3844 4.335594 GGCCTTAGGTTTACACAGCTAATG 59.664 45.833 0.00 0.00 36.42 1.90
2432 3854 9.869757 GGTTTACACAGCTAATGGATAAATTTT 57.130 29.630 0.00 0.00 29.97 1.82
2469 3891 2.306805 TCAATGCTTCTGGACCTGATGT 59.693 45.455 13.58 0.00 0.00 3.06
2470 3892 2.681848 CAATGCTTCTGGACCTGATGTC 59.318 50.000 13.58 8.19 43.67 3.06
2477 3899 5.931146 GCTTCTGGACCTGATGTCATATTAG 59.069 44.000 13.58 2.52 46.38 1.73
2486 3908 7.220030 ACCTGATGTCATATTAGATGTGGAAC 58.780 38.462 0.00 0.00 37.35 3.62
2489 3911 7.219322 TGATGTCATATTAGATGTGGAACTGG 58.781 38.462 0.00 0.00 38.04 4.00
2495 3917 0.036952 AGATGTGGAACTGGTCTGCG 60.037 55.000 0.00 0.00 38.04 5.18
2497 3919 1.768684 ATGTGGAACTGGTCTGCGGT 61.769 55.000 0.00 0.00 38.04 5.68
2502 3924 0.320771 GAACTGGTCTGCGGTGATGT 60.321 55.000 0.00 0.00 0.00 3.06
2513 3935 5.793457 GTCTGCGGTGATGTGTTTATTTAAC 59.207 40.000 0.00 0.00 37.26 2.01
2520 4048 9.445786 CGGTGATGTGTTTATTTAACCATATTC 57.554 33.333 0.00 0.00 35.81 1.75
2542 4071 5.534407 TCTTATTGTTGTCGCTGTTAGTGA 58.466 37.500 0.00 0.00 31.34 3.41
2546 4075 3.723260 TGTTGTCGCTGTTAGTGATTCA 58.277 40.909 0.00 0.00 37.06 2.57
2551 4080 4.447724 TGTCGCTGTTAGTGATTCAAGTTC 59.552 41.667 0.00 0.00 37.06 3.01
2556 4085 7.439955 TCGCTGTTAGTGATTCAAGTTCTTTTA 59.560 33.333 0.00 0.00 28.30 1.52
2557 4086 7.742089 CGCTGTTAGTGATTCAAGTTCTTTTAG 59.258 37.037 0.00 0.00 0.00 1.85
2558 4087 8.774586 GCTGTTAGTGATTCAAGTTCTTTTAGA 58.225 33.333 0.00 0.00 0.00 2.10
2604 4134 7.716799 TGGTTACCATATTCAGAATTTGCTT 57.283 32.000 0.00 0.00 0.00 3.91
2606 4136 7.615365 TGGTTACCATATTCAGAATTTGCTTCT 59.385 33.333 0.00 0.00 45.34 2.85
2610 4140 8.767478 ACCATATTCAGAATTTGCTTCTTTTG 57.233 30.769 0.00 0.00 41.60 2.44
2616 4146 8.721019 TTCAGAATTTGCTTCTTTTGTGATTT 57.279 26.923 0.00 0.00 41.60 2.17
2622 4152 2.802247 GCTTCTTTTGTGATTTGCCACC 59.198 45.455 0.00 0.00 36.26 4.61
2628 4158 0.251297 TGTGATTTGCCACCTCCCAG 60.251 55.000 0.00 0.00 36.26 4.45
2631 4161 1.177401 GATTTGCCACCTCCCAGTTC 58.823 55.000 0.00 0.00 0.00 3.01
2651 4185 3.958018 TCGCTGGGTACATATTTGGTTT 58.042 40.909 0.00 0.00 0.00 3.27
2676 4210 5.642491 GTGAACCTAGTAATTTTTCTCCGCT 59.358 40.000 0.00 0.00 0.00 5.52
2690 4224 1.476085 CTCCGCTGACTCTGATTCACT 59.524 52.381 0.00 0.00 0.00 3.41
2724 4258 7.931578 TTTGACTCGTGAACCCAATTATATT 57.068 32.000 0.00 0.00 0.00 1.28
2732 4266 6.811170 CGTGAACCCAATTATATTGCTTTGTT 59.189 34.615 0.00 0.00 0.00 2.83
2733 4267 7.009174 CGTGAACCCAATTATATTGCTTTGTTC 59.991 37.037 0.00 0.00 0.00 3.18
2736 4270 8.776376 AACCCAATTATATTGCTTTGTTCTTG 57.224 30.769 0.00 0.00 0.00 3.02
2737 4271 6.818142 ACCCAATTATATTGCTTTGTTCTTGC 59.182 34.615 0.00 0.00 0.00 4.01
2741 4277 6.890663 TTATATTGCTTTGTTCTTGCATGC 57.109 33.333 11.82 11.82 36.55 4.06
2750 4286 3.333804 TGTTCTTGCATGCTGATTCGTA 58.666 40.909 20.33 0.00 0.00 3.43
2752 4288 4.395854 TGTTCTTGCATGCTGATTCGTAAT 59.604 37.500 20.33 0.00 0.00 1.89
2757 4293 2.225019 GCATGCTGATTCGTAATCCCAG 59.775 50.000 11.37 0.00 37.09 4.45
2795 4333 5.367937 ACATAAAGAGAGACCATACCAGCAT 59.632 40.000 0.00 0.00 0.00 3.79
2796 4334 6.554982 ACATAAAGAGAGACCATACCAGCATA 59.445 38.462 0.00 0.00 0.00 3.14
2797 4335 5.543507 AAAGAGAGACCATACCAGCATAG 57.456 43.478 0.00 0.00 0.00 2.23
2798 4336 4.461450 AGAGAGACCATACCAGCATAGA 57.539 45.455 0.00 0.00 0.00 1.98
2799 4337 5.009436 AGAGAGACCATACCAGCATAGAT 57.991 43.478 0.00 0.00 0.00 1.98
2800 4338 6.146140 AGAGAGACCATACCAGCATAGATA 57.854 41.667 0.00 0.00 0.00 1.98
2801 4339 5.949354 AGAGAGACCATACCAGCATAGATAC 59.051 44.000 0.00 0.00 0.00 2.24
2802 4340 5.898120 AGAGACCATACCAGCATAGATACT 58.102 41.667 0.00 0.00 0.00 2.12
2803 4341 7.033782 AGAGACCATACCAGCATAGATACTA 57.966 40.000 0.00 0.00 0.00 1.82
2804 4342 7.471041 AGAGACCATACCAGCATAGATACTAA 58.529 38.462 0.00 0.00 0.00 2.24
2805 4343 7.613801 AGAGACCATACCAGCATAGATACTAAG 59.386 40.741 0.00 0.00 0.00 2.18
2806 4344 7.471041 AGACCATACCAGCATAGATACTAAGA 58.529 38.462 0.00 0.00 0.00 2.10
2807 4345 7.394923 AGACCATACCAGCATAGATACTAAGAC 59.605 40.741 0.00 0.00 0.00 3.01
2808 4346 6.151312 ACCATACCAGCATAGATACTAAGACG 59.849 42.308 0.00 0.00 0.00 4.18
2809 4347 6.151312 CCATACCAGCATAGATACTAAGACGT 59.849 42.308 0.00 0.00 0.00 4.34
2810 4348 7.336176 CCATACCAGCATAGATACTAAGACGTA 59.664 40.741 0.00 0.00 0.00 3.57
2811 4349 8.727910 CATACCAGCATAGATACTAAGACGTAA 58.272 37.037 0.00 0.00 0.00 3.18
2891 4429 4.457603 TGAATGGACCGATAAACAACAAGG 59.542 41.667 0.00 0.00 0.00 3.61
2895 4433 1.883926 ACCGATAAACAACAAGGCCAC 59.116 47.619 5.01 0.00 0.00 5.01
2903 4441 0.798776 CAACAAGGCCACGAGCTTAG 59.201 55.000 5.01 0.00 43.05 2.18
2904 4442 0.685097 AACAAGGCCACGAGCTTAGA 59.315 50.000 5.01 0.00 43.05 2.10
2909 4447 0.872021 GGCCACGAGCTTAGATGTCG 60.872 60.000 0.00 0.00 43.05 4.35
2910 4448 1.483424 GCCACGAGCTTAGATGTCGC 61.483 60.000 0.00 0.00 37.20 5.19
2912 4450 1.469940 CCACGAGCTTAGATGTCGCTT 60.470 52.381 0.00 0.00 37.20 4.68
2915 4453 3.857665 CACGAGCTTAGATGTCGCTTTTA 59.142 43.478 0.00 0.00 37.20 1.52
2916 4454 4.027295 CACGAGCTTAGATGTCGCTTTTAG 60.027 45.833 0.00 0.00 37.20 1.85
2927 4465 5.907197 TGTCGCTTTTAGAGTCTCAAAAG 57.093 39.130 21.20 21.20 42.19 2.27
2931 4469 7.042925 TGTCGCTTTTAGAGTCTCAAAAGTTAC 60.043 37.037 23.58 21.62 41.62 2.50
2932 4470 6.982141 TCGCTTTTAGAGTCTCAAAAGTTACA 59.018 34.615 23.58 12.28 41.62 2.41
3000 4539 8.928733 CCATGAAAATTTGTGTTTATGAAGAGG 58.071 33.333 0.00 0.00 0.00 3.69
3048 4587 7.798596 ATCTCTTATTCATTGTCGAAAGCAT 57.201 32.000 0.00 0.00 0.00 3.79
3063 4602 6.018425 GTCGAAAGCATGACAAGTATGATCAT 60.018 38.462 13.81 13.81 35.20 2.45
3064 4603 6.201615 TCGAAAGCATGACAAGTATGATCATC 59.798 38.462 12.53 4.31 30.58 2.92
3065 4604 6.018507 CGAAAGCATGACAAGTATGATCATCA 60.019 38.462 12.53 4.00 30.58 3.07
3066 4605 7.307811 CGAAAGCATGACAAGTATGATCATCAT 60.308 37.037 12.53 5.24 40.72 2.45
3067 4606 7.818997 AAGCATGACAAGTATGATCATCATT 57.181 32.000 12.53 5.48 38.26 2.57
3068 4607 7.203255 AGCATGACAAGTATGATCATCATTG 57.797 36.000 22.20 22.20 38.26 2.82
3069 4608 6.996282 AGCATGACAAGTATGATCATCATTGA 59.004 34.615 27.18 14.15 38.26 2.57
3070 4609 7.173390 AGCATGACAAGTATGATCATCATTGAG 59.827 37.037 27.18 18.18 38.26 3.02
3071 4610 7.041303 GCATGACAAGTATGATCATCATTGAGT 60.041 37.037 27.18 15.13 38.26 3.41
3072 4611 9.485206 CATGACAAGTATGATCATCATTGAGTA 57.515 33.333 27.18 17.44 38.26 2.59
3073 4612 8.877808 TGACAAGTATGATCATCATTGAGTAC 57.122 34.615 27.18 13.75 38.26 2.73
3074 4613 8.477256 TGACAAGTATGATCATCATTGAGTACA 58.523 33.333 27.18 19.88 38.26 2.90
3075 4614 9.486497 GACAAGTATGATCATCATTGAGTACAT 57.514 33.333 27.18 12.40 38.26 2.29
3076 4615 9.486497 ACAAGTATGATCATCATTGAGTACATC 57.514 33.333 27.18 0.00 38.26 3.06
3077 4616 8.933807 CAAGTATGATCATCATTGAGTACATCC 58.066 37.037 20.46 0.00 38.26 3.51
3078 4617 8.433249 AGTATGATCATCATTGAGTACATCCT 57.567 34.615 12.53 0.00 38.26 3.24
3079 4618 8.530311 AGTATGATCATCATTGAGTACATCCTC 58.470 37.037 12.53 0.00 38.26 3.71
3080 4619 6.106648 TGATCATCATTGAGTACATCCTCC 57.893 41.667 0.00 0.00 34.73 4.30
3081 4620 5.603813 TGATCATCATTGAGTACATCCTCCA 59.396 40.000 0.00 0.00 34.73 3.86
3082 4621 5.541953 TCATCATTGAGTACATCCTCCAG 57.458 43.478 0.00 0.00 0.00 3.86
3083 4622 4.346127 TCATCATTGAGTACATCCTCCAGG 59.654 45.833 0.00 0.00 0.00 4.45
3084 4623 3.724478 TCATTGAGTACATCCTCCAGGT 58.276 45.455 0.00 0.00 36.34 4.00
3085 4624 4.104086 TCATTGAGTACATCCTCCAGGTT 58.896 43.478 0.00 0.00 36.34 3.50
3086 4625 4.162320 TCATTGAGTACATCCTCCAGGTTC 59.838 45.833 0.00 0.00 36.34 3.62
3087 4626 2.467880 TGAGTACATCCTCCAGGTTCC 58.532 52.381 0.00 0.00 36.34 3.62
3088 4627 2.044492 TGAGTACATCCTCCAGGTTCCT 59.956 50.000 0.00 0.00 36.34 3.36
3089 4628 3.108376 GAGTACATCCTCCAGGTTCCTT 58.892 50.000 0.00 0.00 36.34 3.36
3090 4629 2.840651 AGTACATCCTCCAGGTTCCTTG 59.159 50.000 0.00 0.00 36.34 3.61
3091 4630 0.329596 ACATCCTCCAGGTTCCTTGC 59.670 55.000 0.00 0.00 36.34 4.01
3092 4631 0.329261 CATCCTCCAGGTTCCTTGCA 59.671 55.000 0.00 0.00 36.34 4.08
3093 4632 1.064166 CATCCTCCAGGTTCCTTGCAT 60.064 52.381 0.00 0.00 36.34 3.96
3094 4633 1.075601 TCCTCCAGGTTCCTTGCATT 58.924 50.000 0.00 0.00 36.34 3.56
3095 4634 1.428912 TCCTCCAGGTTCCTTGCATTT 59.571 47.619 0.00 0.00 36.34 2.32
3096 4635 1.821136 CCTCCAGGTTCCTTGCATTTC 59.179 52.381 0.00 0.00 0.00 2.17
3097 4636 2.517959 CTCCAGGTTCCTTGCATTTCA 58.482 47.619 0.00 0.00 0.00 2.69
3098 4637 3.094572 CTCCAGGTTCCTTGCATTTCAT 58.905 45.455 0.00 0.00 0.00 2.57
3099 4638 3.091545 TCCAGGTTCCTTGCATTTCATC 58.908 45.455 0.00 0.00 0.00 2.92
3100 4639 3.094572 CCAGGTTCCTTGCATTTCATCT 58.905 45.455 0.00 0.00 0.00 2.90
3101 4640 3.129988 CCAGGTTCCTTGCATTTCATCTC 59.870 47.826 0.00 0.00 0.00 2.75
3102 4641 4.015084 CAGGTTCCTTGCATTTCATCTCT 58.985 43.478 0.00 0.00 0.00 3.10
3103 4642 4.461781 CAGGTTCCTTGCATTTCATCTCTT 59.538 41.667 0.00 0.00 0.00 2.85
3104 4643 4.461781 AGGTTCCTTGCATTTCATCTCTTG 59.538 41.667 0.00 0.00 0.00 3.02
3105 4644 4.381292 GGTTCCTTGCATTTCATCTCTTGG 60.381 45.833 0.00 0.00 0.00 3.61
3106 4645 4.038271 TCCTTGCATTTCATCTCTTGGT 57.962 40.909 0.00 0.00 0.00 3.67
3107 4646 4.410099 TCCTTGCATTTCATCTCTTGGTT 58.590 39.130 0.00 0.00 0.00 3.67
3108 4647 4.219070 TCCTTGCATTTCATCTCTTGGTTG 59.781 41.667 0.00 0.00 0.00 3.77
3109 4648 3.581024 TGCATTTCATCTCTTGGTTGC 57.419 42.857 0.00 0.00 0.00 4.17
3110 4649 2.892215 TGCATTTCATCTCTTGGTTGCA 59.108 40.909 0.00 0.00 34.63 4.08
3111 4650 3.057104 TGCATTTCATCTCTTGGTTGCAG 60.057 43.478 0.00 0.00 33.19 4.41
3112 4651 3.057033 GCATTTCATCTCTTGGTTGCAGT 60.057 43.478 0.00 0.00 0.00 4.40
3113 4652 4.730657 CATTTCATCTCTTGGTTGCAGTC 58.269 43.478 0.00 0.00 0.00 3.51
3114 4653 2.479566 TCATCTCTTGGTTGCAGTCC 57.520 50.000 3.46 3.46 0.00 3.85
3115 4654 1.003580 TCATCTCTTGGTTGCAGTCCC 59.996 52.381 7.40 0.55 0.00 4.46
3116 4655 1.004044 CATCTCTTGGTTGCAGTCCCT 59.996 52.381 7.40 0.00 0.00 4.20
3117 4656 0.397941 TCTCTTGGTTGCAGTCCCTG 59.602 55.000 7.40 0.00 34.12 4.45
3126 4665 2.839098 CAGTCCCTGCCTGGTTGT 59.161 61.111 0.00 0.00 0.00 3.32
3127 4666 1.601759 CAGTCCCTGCCTGGTTGTG 60.602 63.158 0.00 0.00 0.00 3.33
3128 4667 2.985847 GTCCCTGCCTGGTTGTGC 60.986 66.667 0.00 0.00 0.00 4.57
3129 4668 3.177884 TCCCTGCCTGGTTGTGCT 61.178 61.111 0.00 0.00 0.00 4.40
3130 4669 2.674380 CCCTGCCTGGTTGTGCTC 60.674 66.667 0.00 0.00 0.00 4.26
3131 4670 2.433446 CCTGCCTGGTTGTGCTCT 59.567 61.111 0.00 0.00 0.00 4.09
3132 4671 1.228367 CCTGCCTGGTTGTGCTCTT 60.228 57.895 0.00 0.00 0.00 2.85
3133 4672 0.825010 CCTGCCTGGTTGTGCTCTTT 60.825 55.000 0.00 0.00 0.00 2.52
3134 4673 0.595095 CTGCCTGGTTGTGCTCTTTC 59.405 55.000 0.00 0.00 0.00 2.62
3135 4674 0.183492 TGCCTGGTTGTGCTCTTTCT 59.817 50.000 0.00 0.00 0.00 2.52
3136 4675 1.322442 GCCTGGTTGTGCTCTTTCTT 58.678 50.000 0.00 0.00 0.00 2.52
3137 4676 2.158682 TGCCTGGTTGTGCTCTTTCTTA 60.159 45.455 0.00 0.00 0.00 2.10
3138 4677 2.485814 GCCTGGTTGTGCTCTTTCTTAG 59.514 50.000 0.00 0.00 0.00 2.18
3139 4678 3.744660 CCTGGTTGTGCTCTTTCTTAGT 58.255 45.455 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.642778 CTGTTCGTCGGTCGGGCAT 62.643 63.158 0.00 0.00 40.32 4.40
51 53 1.948145 GGAGTCACGTCGGACATATCT 59.052 52.381 9.10 1.17 40.29 1.98
55 57 0.895530 AATGGAGTCACGTCGGACAT 59.104 50.000 9.10 0.00 40.29 3.06
62 64 0.319555 CCGACACAATGGAGTCACGT 60.320 55.000 8.40 0.00 34.71 4.49
102 105 2.969238 GCGATGATCCAGCCCACG 60.969 66.667 0.00 0.00 0.00 4.94
103 106 2.969238 CGCGATGATCCAGCCCAC 60.969 66.667 0.00 0.00 0.00 4.61
130 137 3.074390 TGGGCAAGGAGAGATTTTTCAGA 59.926 43.478 0.00 0.00 0.00 3.27
167 175 4.444876 CCATTTCCGATGGGACTCATAGTT 60.445 45.833 0.00 0.00 43.74 2.24
301 317 3.321315 CTTCAAAATGCGGGCGCGA 62.321 57.895 28.66 12.45 45.51 5.87
314 330 2.964464 TCCTTTGCTGCCATTTCTTCAA 59.036 40.909 0.00 0.00 0.00 2.69
331 347 4.250305 AGGGCGTGCGTGTTCCTT 62.250 61.111 0.00 0.00 0.00 3.36
355 371 4.301027 ATCGCCCGATTCCGCTCC 62.301 66.667 0.00 0.00 0.00 4.70
394 410 1.366854 CGTCGATGTCCTCCGTCAGA 61.367 60.000 0.00 0.00 0.00 3.27
396 412 1.376295 TCGTCGATGTCCTCCGTCA 60.376 57.895 4.21 0.00 0.00 4.35
399 415 0.523546 CTTGTCGTCGATGTCCTCCG 60.524 60.000 4.21 0.00 0.00 4.63
416 444 4.052229 CGTCGCCGGAGTGTCCTT 62.052 66.667 5.05 0.00 33.30 3.36
449 477 2.101770 CGAAGACGCGGTAGGGAC 59.898 66.667 12.47 0.00 0.00 4.46
510 538 1.344953 ATCATCCACGGCTGCCCTTA 61.345 55.000 14.12 0.00 0.00 2.69
559 587 3.451178 ACTAAACATGCCATCGGACTACT 59.549 43.478 0.00 0.00 0.00 2.57
587 615 1.399714 TCGTTCGGCTACTCCATCAT 58.600 50.000 0.00 0.00 34.01 2.45
611 639 2.898181 TGCAACTATGTCAATGCACG 57.102 45.000 0.00 0.00 43.32 5.34
646 679 8.956446 TCTGGACACCTCAATTATCATATCTA 57.044 34.615 0.00 0.00 0.00 1.98
696 729 1.723003 GTTCGCGAACACTAATCGGTT 59.277 47.619 39.21 0.00 40.84 4.44
754 791 3.452627 AGATCATCTACAGCCGGACTTTT 59.547 43.478 5.05 0.00 0.00 2.27
889 928 0.811219 GCTGTGCCGCTGATGATGTA 60.811 55.000 0.00 0.00 0.00 2.29
909 1125 1.339151 ACTCCAAGTGGCCGATTTCTC 60.339 52.381 0.00 0.00 34.44 2.87
1637 3049 2.065993 ATCGATGTATAGCACGGCAC 57.934 50.000 0.00 0.00 0.00 5.01
1647 3059 3.059884 CACGCCAAGCTTATCGATGTAT 58.940 45.455 21.44 1.41 0.00 2.29
1699 3111 1.295357 TGAAACGCGAACGCCATGAT 61.295 50.000 15.93 0.00 45.53 2.45
2016 3428 5.755375 CAGAAACTTCTTCTCAGTTAGTGCA 59.245 40.000 0.00 0.00 34.74 4.57
2019 3431 6.098409 TGTCCAGAAACTTCTTCTCAGTTAGT 59.902 38.462 0.00 0.00 34.74 2.24
2022 3434 5.359194 TGTCCAGAAACTTCTTCTCAGTT 57.641 39.130 0.00 0.00 34.74 3.16
2088 3500 5.491070 TCAGCACAGTAAGATGCATAAGTT 58.509 37.500 0.00 0.00 44.59 2.66
2148 3560 4.067896 TGCACAGAGTCTCTTTTTCCATC 58.932 43.478 0.00 0.00 0.00 3.51
2250 3662 5.268544 CCATAGCAAACTGATGAACATTCG 58.731 41.667 0.00 0.00 0.00 3.34
2258 3670 5.237996 CAGTATCACCCATAGCAAACTGATG 59.762 44.000 0.00 0.00 36.13 3.07
2260 3672 4.225042 ACAGTATCACCCATAGCAAACTGA 59.775 41.667 6.18 0.00 37.22 3.41
2279 3691 1.335145 ACTAGGCGGTGTTACACAGT 58.665 50.000 17.67 8.56 35.86 3.55
2280 3692 2.450609 AACTAGGCGGTGTTACACAG 57.549 50.000 17.67 14.35 35.86 3.66
2290 3702 3.050619 CTGCTATTCGTTAACTAGGCGG 58.949 50.000 3.71 2.82 0.00 6.13
2293 3705 4.933330 TGCTCTGCTATTCGTTAACTAGG 58.067 43.478 3.71 0.00 0.00 3.02
2315 3727 8.427276 TCTATCTAGATGCTGATCACATTTGTT 58.573 33.333 15.79 0.00 0.00 2.83
2318 3730 7.960262 TGTCTATCTAGATGCTGATCACATTT 58.040 34.615 15.79 8.56 34.39 2.32
2319 3731 7.536159 TGTCTATCTAGATGCTGATCACATT 57.464 36.000 15.79 5.71 34.39 2.71
2332 3744 6.266330 CACTCCACAATCCATGTCTATCTAGA 59.734 42.308 0.00 0.00 41.46 2.43
2342 3754 1.771565 ATGGCACTCCACAATCCATG 58.228 50.000 0.00 0.00 46.92 3.66
2349 3761 0.478072 ACTGGAAATGGCACTCCACA 59.522 50.000 14.56 0.00 46.92 4.17
2376 3796 8.764287 GGCCAAATTAACTGCATATAAATCAAC 58.236 33.333 0.00 0.00 0.00 3.18
2387 3807 3.773560 ACCTAAGGCCAAATTAACTGCA 58.226 40.909 5.01 0.00 0.00 4.41
2388 3808 4.801330 AACCTAAGGCCAAATTAACTGC 57.199 40.909 5.01 0.00 0.00 4.40
2389 3809 7.088272 GTGTAAACCTAAGGCCAAATTAACTG 58.912 38.462 5.01 0.00 0.00 3.16
2390 3810 6.778559 TGTGTAAACCTAAGGCCAAATTAACT 59.221 34.615 5.01 0.00 0.00 2.24
2422 3844 9.535878 AAGTCGAGTCTATCTCAAAATTTATCC 57.464 33.333 0.00 0.00 42.88 2.59
2432 3854 4.642437 AGCATTGAAGTCGAGTCTATCTCA 59.358 41.667 0.00 0.00 42.88 3.27
2435 3857 5.458452 CAGAAGCATTGAAGTCGAGTCTATC 59.542 44.000 0.00 0.00 0.00 2.08
2438 3860 3.583806 CAGAAGCATTGAAGTCGAGTCT 58.416 45.455 0.00 0.00 0.00 3.24
2443 3865 1.734465 GGTCCAGAAGCATTGAAGTCG 59.266 52.381 0.00 0.00 0.00 4.18
2445 3867 2.373169 TCAGGTCCAGAAGCATTGAAGT 59.627 45.455 0.00 0.00 0.00 3.01
2448 3870 2.306805 ACATCAGGTCCAGAAGCATTGA 59.693 45.455 0.00 0.00 0.00 2.57
2469 3891 6.686378 GCAGACCAGTTCCACATCTAATATGA 60.686 42.308 0.00 0.00 0.00 2.15
2470 3892 5.468072 GCAGACCAGTTCCACATCTAATATG 59.532 44.000 0.00 0.00 0.00 1.78
2477 3899 1.021390 CCGCAGACCAGTTCCACATC 61.021 60.000 0.00 0.00 0.00 3.06
2486 3908 0.603707 AACACATCACCGCAGACCAG 60.604 55.000 0.00 0.00 0.00 4.00
2489 3911 4.419522 AAATAAACACATCACCGCAGAC 57.580 40.909 0.00 0.00 0.00 3.51
2513 3935 6.363577 ACAGCGACAACAATAAGAATATGG 57.636 37.500 0.00 0.00 0.00 2.74
2520 4048 5.839262 TCACTAACAGCGACAACAATAAG 57.161 39.130 0.00 0.00 0.00 1.73
2522 4050 5.929415 TGAATCACTAACAGCGACAACAATA 59.071 36.000 0.00 0.00 0.00 1.90
2532 4061 8.774586 TCTAAAAGAACTTGAATCACTAACAGC 58.225 33.333 0.00 0.00 0.00 4.40
2556 4085 7.762615 CCATGATTTCAACAATTGCAAGTATCT 59.237 33.333 4.94 0.00 0.00 1.98
2557 4086 7.546667 ACCATGATTTCAACAATTGCAAGTATC 59.453 33.333 4.94 1.67 0.00 2.24
2558 4087 7.388437 ACCATGATTTCAACAATTGCAAGTAT 58.612 30.769 4.94 0.00 0.00 2.12
2559 4088 6.757237 ACCATGATTTCAACAATTGCAAGTA 58.243 32.000 4.94 0.00 0.00 2.24
2604 4134 2.627699 GGAGGTGGCAAATCACAAAAGA 59.372 45.455 0.00 0.00 39.27 2.52
2606 4136 1.691434 GGGAGGTGGCAAATCACAAAA 59.309 47.619 0.00 0.00 39.27 2.44
2610 4140 0.251341 ACTGGGAGGTGGCAAATCAC 60.251 55.000 0.00 0.00 36.95 3.06
2616 4146 4.329545 GCGAACTGGGAGGTGGCA 62.330 66.667 0.00 0.00 0.00 4.92
2628 4158 3.275999 ACCAAATATGTACCCAGCGAAC 58.724 45.455 0.00 0.00 0.00 3.95
2631 4161 3.442273 ACAAACCAAATATGTACCCAGCG 59.558 43.478 0.00 0.00 0.00 5.18
2651 4185 5.410439 GCGGAGAAAAATTACTAGGTTCACA 59.590 40.000 0.00 0.00 0.00 3.58
2663 4197 4.008074 TCAGAGTCAGCGGAGAAAAATT 57.992 40.909 0.00 0.00 0.00 1.82
2669 4203 1.474478 GTGAATCAGAGTCAGCGGAGA 59.526 52.381 0.00 0.00 0.00 3.71
2670 4204 1.476085 AGTGAATCAGAGTCAGCGGAG 59.524 52.381 0.00 0.00 0.00 4.63
2690 4224 8.041919 TGGGTTCACGAGTCAAATAATATGTTA 58.958 33.333 0.00 0.00 0.00 2.41
2724 4258 1.682323 TCAGCATGCAAGAACAAAGCA 59.318 42.857 21.98 0.00 43.14 3.91
2732 4266 3.561310 GGATTACGAATCAGCATGCAAGA 59.439 43.478 21.98 17.56 39.71 3.02
2733 4267 3.304257 GGGATTACGAATCAGCATGCAAG 60.304 47.826 21.98 12.28 39.71 4.01
2736 4270 2.221169 TGGGATTACGAATCAGCATGC 58.779 47.619 10.51 10.51 39.71 4.06
2737 4271 3.470709 ACTGGGATTACGAATCAGCATG 58.529 45.455 0.00 0.00 39.71 4.06
2741 4277 6.458751 CCAAAATGACTGGGATTACGAATCAG 60.459 42.308 0.00 0.00 39.71 2.90
2750 4286 4.653341 TGTCAAACCAAAATGACTGGGATT 59.347 37.500 7.35 0.00 44.86 3.01
2752 4288 3.636679 TGTCAAACCAAAATGACTGGGA 58.363 40.909 7.35 0.00 44.86 4.37
2757 4293 8.567948 TCTCTCTTTATGTCAAACCAAAATGAC 58.432 33.333 0.00 0.00 44.84 3.06
2802 4340 9.994432 GCTTAGTATTTCAGTACTTACGTCTTA 57.006 33.333 0.00 0.00 36.39 2.10
2803 4341 8.738106 AGCTTAGTATTTCAGTACTTACGTCTT 58.262 33.333 0.00 0.00 36.39 3.01
2804 4342 8.278729 AGCTTAGTATTTCAGTACTTACGTCT 57.721 34.615 0.00 0.00 36.39 4.18
2805 4343 9.994432 TTAGCTTAGTATTTCAGTACTTACGTC 57.006 33.333 0.00 0.00 36.39 4.34
2813 4351 9.314321 GCATCACTTTAGCTTAGTATTTCAGTA 57.686 33.333 0.00 0.00 0.00 2.74
2814 4352 8.043710 AGCATCACTTTAGCTTAGTATTTCAGT 58.956 33.333 0.00 0.00 34.37 3.41
2815 4353 8.333908 CAGCATCACTTTAGCTTAGTATTTCAG 58.666 37.037 0.00 0.00 36.26 3.02
2816 4354 7.280876 CCAGCATCACTTTAGCTTAGTATTTCA 59.719 37.037 0.00 0.00 36.26 2.69
2817 4355 7.281100 ACCAGCATCACTTTAGCTTAGTATTTC 59.719 37.037 0.00 0.00 36.26 2.17
2853 4391 9.126151 TCGGTCCATTCATTATTTTATTTAGCA 57.874 29.630 0.00 0.00 0.00 3.49
2861 4399 9.581099 GTTGTTTATCGGTCCATTCATTATTTT 57.419 29.630 0.00 0.00 0.00 1.82
2862 4400 8.744652 TGTTGTTTATCGGTCCATTCATTATTT 58.255 29.630 0.00 0.00 0.00 1.40
2865 4403 7.148154 CCTTGTTGTTTATCGGTCCATTCATTA 60.148 37.037 0.00 0.00 0.00 1.90
2868 4406 4.457603 CCTTGTTGTTTATCGGTCCATTCA 59.542 41.667 0.00 0.00 0.00 2.57
2877 4415 1.801771 TCGTGGCCTTGTTGTTTATCG 59.198 47.619 3.32 0.00 0.00 2.92
2891 4429 1.483424 GCGACATCTAAGCTCGTGGC 61.483 60.000 0.00 0.00 42.19 5.01
2895 4433 4.352039 TCTAAAAGCGACATCTAAGCTCG 58.648 43.478 0.00 0.00 40.78 5.03
2903 4441 6.146347 ACTTTTGAGACTCTAAAAGCGACATC 59.854 38.462 24.60 0.00 43.96 3.06
2904 4442 5.992217 ACTTTTGAGACTCTAAAAGCGACAT 59.008 36.000 24.60 12.58 43.96 3.06
2909 4447 8.613482 AGTTGTAACTTTTGAGACTCTAAAAGC 58.387 33.333 24.60 16.16 43.96 3.51
2942 4480 9.884636 AAAAGCAAAGAAGTAAAAAGGTACATT 57.115 25.926 0.00 0.00 0.00 2.71
2944 4482 7.977293 GGAAAAGCAAAGAAGTAAAAAGGTACA 59.023 33.333 0.00 0.00 0.00 2.90
3000 4539 4.574013 AGAAGATACAACAATAGCTGCAGC 59.426 41.667 31.53 31.53 42.49 5.25
3038 4577 5.291858 TGATCATACTTGTCATGCTTTCGAC 59.708 40.000 0.00 0.00 0.00 4.20
3040 4579 5.723492 TGATCATACTTGTCATGCTTTCG 57.277 39.130 0.00 0.00 0.00 3.46
3048 4587 8.477256 TGTACTCAATGATGATCATACTTGTCA 58.523 33.333 20.73 11.58 35.76 3.58
3063 4602 3.724478 ACCTGGAGGATGTACTCAATGA 58.276 45.455 0.00 0.00 39.27 2.57
3064 4603 4.446371 GAACCTGGAGGATGTACTCAATG 58.554 47.826 0.00 0.00 39.27 2.82
3065 4604 3.456277 GGAACCTGGAGGATGTACTCAAT 59.544 47.826 0.00 0.00 39.27 2.57
3066 4605 2.838202 GGAACCTGGAGGATGTACTCAA 59.162 50.000 0.00 0.00 39.27 3.02
3067 4606 2.044492 AGGAACCTGGAGGATGTACTCA 59.956 50.000 0.00 0.00 39.27 3.41
3068 4607 2.753247 AGGAACCTGGAGGATGTACTC 58.247 52.381 0.00 0.00 38.94 2.59
3069 4608 2.840651 CAAGGAACCTGGAGGATGTACT 59.159 50.000 0.00 0.00 38.94 2.73
3070 4609 2.681097 GCAAGGAACCTGGAGGATGTAC 60.681 54.545 0.00 0.00 38.94 2.90
3071 4610 1.559682 GCAAGGAACCTGGAGGATGTA 59.440 52.381 0.00 0.00 38.94 2.29
3072 4611 0.329596 GCAAGGAACCTGGAGGATGT 59.670 55.000 0.00 0.00 38.94 3.06
3073 4612 0.329261 TGCAAGGAACCTGGAGGATG 59.671 55.000 0.00 0.00 38.94 3.51
3074 4613 1.302907 ATGCAAGGAACCTGGAGGAT 58.697 50.000 0.00 0.00 38.94 3.24
3075 4614 1.075601 AATGCAAGGAACCTGGAGGA 58.924 50.000 0.00 0.00 38.94 3.71
3076 4615 1.821136 GAAATGCAAGGAACCTGGAGG 59.179 52.381 0.00 0.00 42.17 4.30
3077 4616 2.517959 TGAAATGCAAGGAACCTGGAG 58.482 47.619 0.00 0.00 0.00 3.86
3078 4617 2.673775 TGAAATGCAAGGAACCTGGA 57.326 45.000 0.00 0.00 0.00 3.86
3079 4618 3.094572 AGATGAAATGCAAGGAACCTGG 58.905 45.455 0.00 0.00 0.00 4.45
3080 4619 4.015084 AGAGATGAAATGCAAGGAACCTG 58.985 43.478 0.00 0.00 0.00 4.00
3081 4620 4.313020 AGAGATGAAATGCAAGGAACCT 57.687 40.909 0.00 0.00 0.00 3.50
3082 4621 4.381292 CCAAGAGATGAAATGCAAGGAACC 60.381 45.833 0.00 0.00 0.00 3.62
3083 4622 4.219288 ACCAAGAGATGAAATGCAAGGAAC 59.781 41.667 0.00 0.00 0.00 3.62
3084 4623 4.410099 ACCAAGAGATGAAATGCAAGGAA 58.590 39.130 0.00 0.00 0.00 3.36
3085 4624 4.038271 ACCAAGAGATGAAATGCAAGGA 57.962 40.909 0.00 0.00 0.00 3.36
3086 4625 4.491676 CAACCAAGAGATGAAATGCAAGG 58.508 43.478 0.00 0.00 0.00 3.61
3087 4626 3.924686 GCAACCAAGAGATGAAATGCAAG 59.075 43.478 0.00 0.00 34.14 4.01
3088 4627 3.321396 TGCAACCAAGAGATGAAATGCAA 59.679 39.130 0.00 0.00 38.12 4.08
3089 4628 2.892215 TGCAACCAAGAGATGAAATGCA 59.108 40.909 0.00 0.00 38.47 3.96
3090 4629 3.057033 ACTGCAACCAAGAGATGAAATGC 60.057 43.478 0.00 0.00 34.39 3.56
3091 4630 4.380233 GGACTGCAACCAAGAGATGAAATG 60.380 45.833 4.93 0.00 0.00 2.32
3092 4631 3.760684 GGACTGCAACCAAGAGATGAAAT 59.239 43.478 4.93 0.00 0.00 2.17
3093 4632 3.149196 GGACTGCAACCAAGAGATGAAA 58.851 45.455 4.93 0.00 0.00 2.69
3094 4633 2.553028 GGGACTGCAACCAAGAGATGAA 60.553 50.000 10.99 0.00 0.00 2.57
3095 4634 1.003580 GGGACTGCAACCAAGAGATGA 59.996 52.381 10.99 0.00 0.00 2.92
3096 4635 1.004044 AGGGACTGCAACCAAGAGATG 59.996 52.381 10.99 0.00 37.18 2.90
3097 4636 1.366319 AGGGACTGCAACCAAGAGAT 58.634 50.000 10.99 0.00 37.18 2.75
3098 4637 2.854253 AGGGACTGCAACCAAGAGA 58.146 52.632 10.99 0.00 37.18 3.10
3110 4649 2.839098 CACAACCAGGCAGGGACT 59.161 61.111 0.00 0.00 43.89 3.85
3111 4650 2.985847 GCACAACCAGGCAGGGAC 60.986 66.667 0.00 0.00 43.89 4.46
3112 4651 3.177884 AGCACAACCAGGCAGGGA 61.178 61.111 0.00 0.00 43.89 4.20
3113 4652 2.674380 GAGCACAACCAGGCAGGG 60.674 66.667 0.00 0.00 43.89 4.45
3114 4653 0.825010 AAAGAGCACAACCAGGCAGG 60.825 55.000 0.00 0.00 45.67 4.85
3115 4654 0.595095 GAAAGAGCACAACCAGGCAG 59.405 55.000 0.00 0.00 0.00 4.85
3116 4655 0.183492 AGAAAGAGCACAACCAGGCA 59.817 50.000 0.00 0.00 0.00 4.75
3117 4656 1.322442 AAGAAAGAGCACAACCAGGC 58.678 50.000 0.00 0.00 0.00 4.85
3118 4657 3.744660 ACTAAGAAAGAGCACAACCAGG 58.255 45.455 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.