Multiple sequence alignment - TraesCS7D01G184000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G184000
chr7D
100.000
3179
0
0
1
3179
137572082
137568904
0.000000e+00
5871.0
1
TraesCS7D01G184000
chr7D
94.392
945
47
2
985
1929
137764434
137763496
0.000000e+00
1447.0
2
TraesCS7D01G184000
chr7D
95.564
541
15
5
937
1471
137608029
137607492
0.000000e+00
857.0
3
TraesCS7D01G184000
chr7D
93.597
531
23
2
1
520
137610789
137610259
0.000000e+00
782.0
4
TraesCS7D01G184000
chr7D
85.102
537
51
13
4
520
137767941
137767414
3.630000e-144
521.0
5
TraesCS7D01G184000
chr7D
95.331
257
11
1
1926
2182
137717169
137716914
1.060000e-109
407.0
6
TraesCS7D01G184000
chr7D
88.435
294
30
4
517
809
137767186
137766896
5.050000e-93
351.0
7
TraesCS7D01G184000
chr7D
84.889
225
30
3
295
518
68932298
68932077
1.150000e-54
224.0
8
TraesCS7D01G184000
chr7D
96.491
57
0
2
932
988
137766903
137766849
3.380000e-15
93.5
9
TraesCS7D01G184000
chr7D
91.935
62
5
0
517
578
137610011
137609950
1.570000e-13
87.9
10
TraesCS7D01G184000
chr7D
100.000
42
0
0
2643
2684
137569403
137569362
9.450000e-11
78.7
11
TraesCS7D01G184000
chr7D
100.000
42
0
0
2680
2721
137569440
137569399
9.450000e-11
78.7
12
TraesCS7D01G184000
chr7A
95.731
1757
69
4
928
2684
137780832
137779082
0.000000e+00
2824.0
13
TraesCS7D01G184000
chr7A
95.225
356
14
1
2680
3035
137779123
137778771
7.700000e-156
560.0
14
TraesCS7D01G184000
chr7A
84.866
522
57
11
4
508
137781868
137781352
1.020000e-139
507.0
15
TraesCS7D01G184000
chr7A
87.197
289
29
3
518
805
137781111
137780830
3.960000e-84
322.0
16
TraesCS7D01G184000
chr7A
80.429
373
58
8
160
520
71111116
71111485
1.450000e-68
270.0
17
TraesCS7D01G184000
chr7A
94.521
73
1
2
3080
3151
137778777
137778707
3.350000e-20
110.0
18
TraesCS7D01G184000
chr7B
92.491
1758
90
12
934
2684
102267157
102265435
0.000000e+00
2477.0
19
TraesCS7D01G184000
chr7B
93.286
1266
66
9
932
2183
102649393
102648133
0.000000e+00
1849.0
20
TraesCS7D01G184000
chr7B
84.240
533
62
10
4
520
102669091
102668565
1.700000e-137
499.0
21
TraesCS7D01G184000
chr7B
88.435
294
33
1
517
809
102267445
102267152
1.400000e-93
353.0
22
TraesCS7D01G184000
chr7B
88.514
296
18
5
6
288
102269191
102268899
8.440000e-91
344.0
23
TraesCS7D01G184000
chr7B
86.090
266
36
1
518
782
102668355
102668090
5.190000e-73
285.0
24
TraesCS7D01G184000
chr7B
82.734
278
14
7
2680
2956
102265476
102265232
1.920000e-52
217.0
25
TraesCS7D01G184000
chrUn
95.168
683
33
0
1463
2145
468058901
468059583
0.000000e+00
1079.0
26
TraesCS7D01G184000
chrUn
95.194
541
17
5
937
1471
91673654
91673117
0.000000e+00
846.0
27
TraesCS7D01G184000
chrUn
92.279
531
24
3
1
520
91676983
91676459
0.000000e+00
737.0
28
TraesCS7D01G184000
chrUn
95.745
235
10
0
286
520
441249512
441249746
2.310000e-101
379.0
29
TraesCS7D01G184000
chrUn
79.241
448
75
7
50
479
414493530
414493083
2.400000e-76
296.0
30
TraesCS7D01G184000
chrUn
86.854
213
27
1
517
728
91676211
91675999
1.470000e-58
237.0
31
TraesCS7D01G184000
chrUn
86.473
207
27
1
517
722
441249994
441250200
3.190000e-55
226.0
32
TraesCS7D01G184000
chrUn
97.101
69
2
0
721
789
91675941
91675873
2.000000e-22
117.0
33
TraesCS7D01G184000
chrUn
95.652
69
3
0
721
789
441250264
441250332
9.320000e-21
111.0
34
TraesCS7D01G184000
chr4D
81.720
465
69
7
70
518
502028990
502028526
1.080000e-99
374.0
35
TraesCS7D01G184000
chr2D
80.579
484
71
11
50
519
558746310
558746784
5.050000e-93
351.0
36
TraesCS7D01G184000
chr4A
78.893
488
81
16
50
518
246717095
246716611
8.560000e-81
311.0
37
TraesCS7D01G184000
chr6D
81.509
265
47
2
1152
1415
16375301
16375564
1.920000e-52
217.0
38
TraesCS7D01G184000
chr6A
79.365
315
49
7
51
349
15451740
15452054
1.160000e-49
207.0
39
TraesCS7D01G184000
chr6A
79.505
283
52
6
1142
1421
7977860
7978139
2.500000e-46
196.0
40
TraesCS7D01G184000
chr6B
76.227
387
73
17
1050
1428
15744040
15743665
1.510000e-43
187.0
41
TraesCS7D01G184000
chr3A
77.406
239
35
12
174
394
728417367
728417130
1.200000e-24
124.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G184000
chr7D
137568904
137572082
3178
True
2009.466667
5871
100.000000
1
3179
3
chr7D.!!$R3
3178
1
TraesCS7D01G184000
chr7D
137763496
137767941
4445
True
603.125000
1447
91.105000
4
1929
4
chr7D.!!$R5
1925
2
TraesCS7D01G184000
chr7D
137607492
137610789
3297
True
575.633333
857
93.698667
1
1471
3
chr7D.!!$R4
1470
3
TraesCS7D01G184000
chr7A
137778707
137781868
3161
True
864.600000
2824
91.508000
4
3151
5
chr7A.!!$R1
3147
4
TraesCS7D01G184000
chr7B
102648133
102649393
1260
True
1849.000000
1849
93.286000
932
2183
1
chr7B.!!$R1
1251
5
TraesCS7D01G184000
chr7B
102265232
102269191
3959
True
847.750000
2477
88.043500
6
2956
4
chr7B.!!$R2
2950
6
TraesCS7D01G184000
chr7B
102668090
102669091
1001
True
392.000000
499
85.165000
4
782
2
chr7B.!!$R3
778
7
TraesCS7D01G184000
chrUn
468058901
468059583
682
False
1079.000000
1079
95.168000
1463
2145
1
chrUn.!!$F1
682
8
TraesCS7D01G184000
chrUn
91673117
91676983
3866
True
484.250000
846
92.857000
1
1471
4
chrUn.!!$R2
1470
9
TraesCS7D01G184000
chrUn
441249512
441250332
820
False
238.666667
379
92.623333
286
789
3
chrUn.!!$F2
503
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
913
4566
0.03254
CCAAAGACAGGTGCCTTTGC
59.967
55.0
11.96
0.0
44.62
3.68
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2467
8590
0.039617
CGATTTTCAGCGCCCAACAA
60.04
50.0
2.29
0.0
0.0
2.83
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
104
111
7.317722
AGAAATAGTACAAAGTCCTTGACCT
57.682
36.000
0.00
0.00
38.50
3.85
192
200
5.426689
AAACATGAAGATCACTGGAGCTA
57.573
39.130
0.00
0.00
39.26
3.32
248
256
3.156293
TGCCACACAAGAATATGCAACT
58.844
40.909
0.00
0.00
0.00
3.16
320
339
2.126502
CGCTTCGCCGCCAAAAAT
60.127
55.556
0.00
0.00
0.00
1.82
554
1830
1.692411
GCACAACTTTGAGGTTCCCT
58.308
50.000
0.00
0.00
36.03
4.20
623
1899
2.380410
GCGCCGACGACACTCAAAT
61.380
57.895
0.00
0.00
43.93
2.32
683
1960
5.243060
TGATCTTTCCAGAAGTTACGAGACA
59.757
40.000
0.00
0.00
30.76
3.41
770
2112
1.066143
CGAAAGTGCCCCAGACTATGT
60.066
52.381
0.00
0.00
0.00
2.29
809
4462
1.215382
CCCACATCGAACTCGCTCA
59.785
57.895
0.00
0.00
39.60
4.26
810
4463
0.803768
CCCACATCGAACTCGCTCAG
60.804
60.000
0.00
0.00
39.60
3.35
811
4464
0.171231
CCACATCGAACTCGCTCAGA
59.829
55.000
0.00
0.00
39.60
3.27
812
4465
1.263776
CACATCGAACTCGCTCAGAC
58.736
55.000
0.00
0.00
39.60
3.51
813
4466
1.135546
CACATCGAACTCGCTCAGACT
60.136
52.381
0.00
0.00
39.60
3.24
814
4467
1.135546
ACATCGAACTCGCTCAGACTG
60.136
52.381
0.00
0.00
39.60
3.51
815
4468
1.135546
CATCGAACTCGCTCAGACTGT
60.136
52.381
1.59
0.00
39.60
3.55
817
4470
1.340657
CGAACTCGCTCAGACTGTGC
61.341
60.000
17.58
17.58
33.90
4.57
818
4471
0.038709
GAACTCGCTCAGACTGTGCT
60.039
55.000
23.07
8.06
34.97
4.40
819
4472
0.390860
AACTCGCTCAGACTGTGCTT
59.609
50.000
23.07
11.11
34.97
3.91
820
4473
0.038709
ACTCGCTCAGACTGTGCTTC
60.039
55.000
23.07
0.32
34.97
3.86
821
4474
1.069924
CTCGCTCAGACTGTGCTTCG
61.070
60.000
23.07
11.03
34.97
3.79
822
4475
2.091112
CGCTCAGACTGTGCTTCGG
61.091
63.158
23.07
7.61
34.97
4.30
824
4477
0.601311
GCTCAGACTGTGCTTCGGTT
60.601
55.000
19.70
0.00
35.55
4.44
825
4478
1.871080
CTCAGACTGTGCTTCGGTTT
58.129
50.000
1.59
0.00
35.55
3.27
826
4479
1.795286
CTCAGACTGTGCTTCGGTTTC
59.205
52.381
1.59
0.00
35.55
2.78
828
4481
2.158957
TCAGACTGTGCTTCGGTTTCTT
60.159
45.455
1.59
0.00
35.55
2.52
829
4482
3.069016
TCAGACTGTGCTTCGGTTTCTTA
59.931
43.478
1.59
0.00
35.55
2.10
830
4483
3.807622
CAGACTGTGCTTCGGTTTCTTAA
59.192
43.478
0.00
0.00
35.55
1.85
831
4484
4.058817
AGACTGTGCTTCGGTTTCTTAAG
58.941
43.478
0.00
0.00
35.55
1.85
832
4485
4.056050
GACTGTGCTTCGGTTTCTTAAGA
58.944
43.478
0.00
0.00
35.55
2.10
834
4487
4.202223
ACTGTGCTTCGGTTTCTTAAGAGA
60.202
41.667
5.12
0.00
30.45
3.10
836
4489
4.202223
TGTGCTTCGGTTTCTTAAGAGACT
60.202
41.667
21.62
0.00
30.73
3.24
837
4490
4.750598
GTGCTTCGGTTTCTTAAGAGACTT
59.249
41.667
21.62
0.00
30.73
3.01
838
4491
4.750098
TGCTTCGGTTTCTTAAGAGACTTG
59.250
41.667
21.62
15.69
30.73
3.16
840
4493
3.660865
TCGGTTTCTTAAGAGACTTGCC
58.339
45.455
21.62
7.89
30.73
4.52
843
4496
4.515567
CGGTTTCTTAAGAGACTTGCCTTT
59.484
41.667
21.62
0.00
30.73
3.11
844
4497
5.560953
CGGTTTCTTAAGAGACTTGCCTTTG
60.561
44.000
21.62
3.30
30.73
2.77
846
4499
6.202226
GTTTCTTAAGAGACTTGCCTTTGTG
58.798
40.000
16.79
0.00
0.00
3.33
848
4501
1.322442
AAGAGACTTGCCTTTGTGCC
58.678
50.000
0.00
0.00
0.00
5.01
849
4502
0.475906
AGAGACTTGCCTTTGTGCCT
59.524
50.000
0.00
0.00
0.00
4.75
850
4503
1.699634
AGAGACTTGCCTTTGTGCCTA
59.300
47.619
0.00
0.00
0.00
3.93
851
4504
2.307098
AGAGACTTGCCTTTGTGCCTAT
59.693
45.455
0.00
0.00
0.00
2.57
852
4505
2.680339
GAGACTTGCCTTTGTGCCTATC
59.320
50.000
0.00
0.00
0.00
2.08
853
4506
2.040278
AGACTTGCCTTTGTGCCTATCA
59.960
45.455
0.00
0.00
0.00
2.15
854
4507
2.162408
GACTTGCCTTTGTGCCTATCAC
59.838
50.000
0.00
0.00
45.82
3.06
865
4518
4.558226
GTGCCTATCACATATGGATCCA
57.442
45.455
18.88
18.88
44.98
3.41
866
4519
4.511527
GTGCCTATCACATATGGATCCAG
58.488
47.826
21.33
9.32
44.98
3.86
868
4521
3.790091
CCTATCACATATGGATCCAGCG
58.210
50.000
21.33
12.96
0.00
5.18
869
4522
2.775911
ATCACATATGGATCCAGCGG
57.224
50.000
21.33
13.54
0.00
5.52
871
4524
0.397941
CACATATGGATCCAGCGGGT
59.602
55.000
21.33
12.40
34.93
5.28
888
4541
3.175304
TGGCTGGCCCACATGTAA
58.825
55.556
9.28
0.00
39.18
2.41
889
4542
1.001020
TGGCTGGCCCACATGTAAG
60.001
57.895
9.28
0.00
39.18
2.34
890
4543
1.754234
GGCTGGCCCACATGTAAGG
60.754
63.158
0.00
3.59
0.00
2.69
899
4552
2.446435
CCACATGTAAGGGACCCAAAG
58.554
52.381
14.60
0.00
0.00
2.77
900
4553
2.041081
CCACATGTAAGGGACCCAAAGA
59.959
50.000
14.60
0.00
0.00
2.52
901
4554
3.081804
CACATGTAAGGGACCCAAAGAC
58.918
50.000
14.60
5.26
0.00
3.01
902
4555
2.714250
ACATGTAAGGGACCCAAAGACA
59.286
45.455
14.60
11.02
0.00
3.41
903
4556
3.244911
ACATGTAAGGGACCCAAAGACAG
60.245
47.826
14.60
7.43
0.00
3.51
904
4557
1.702957
TGTAAGGGACCCAAAGACAGG
59.297
52.381
14.60
0.00
0.00
4.00
906
4559
0.478507
AAGGGACCCAAAGACAGGTG
59.521
55.000
14.60
0.00
36.17
4.00
907
4560
1.603739
GGGACCCAAAGACAGGTGC
60.604
63.158
5.33
0.00
43.28
5.01
908
4561
1.603739
GGACCCAAAGACAGGTGCC
60.604
63.158
0.00
0.00
38.47
5.01
909
4562
1.456287
GACCCAAAGACAGGTGCCT
59.544
57.895
0.00
0.00
36.17
4.75
910
4563
0.178990
GACCCAAAGACAGGTGCCTT
60.179
55.000
0.00
0.00
36.17
4.35
911
4564
0.261696
ACCCAAAGACAGGTGCCTTT
59.738
50.000
0.00
0.00
34.20
3.11
912
4565
0.675633
CCCAAAGACAGGTGCCTTTG
59.324
55.000
10.79
10.79
45.21
2.77
913
4566
0.032540
CCAAAGACAGGTGCCTTTGC
59.967
55.000
11.96
0.00
44.62
3.68
914
4567
0.318107
CAAAGACAGGTGCCTTTGCG
60.318
55.000
5.92
0.00
41.56
4.85
915
4568
1.455383
AAAGACAGGTGCCTTTGCGG
61.455
55.000
0.00
0.00
41.78
5.69
924
4577
2.256461
CCTTTGCGGCACTGAAGC
59.744
61.111
0.05
0.00
0.00
3.86
925
4578
2.263741
CCTTTGCGGCACTGAAGCT
61.264
57.895
0.05
0.00
34.17
3.74
926
4579
1.081641
CTTTGCGGCACTGAAGCTG
60.082
57.895
0.05
0.00
43.77
4.24
942
4628
2.530151
TGCTCCACTGGCTCCCTT
60.530
61.111
0.00
0.00
0.00
3.95
943
4629
1.229496
TGCTCCACTGGCTCCCTTA
60.229
57.895
0.00
0.00
0.00
2.69
1211
7334
2.750350
CCTCAAGGCGTCCAGGTT
59.250
61.111
0.00
0.00
0.00
3.50
1326
7449
2.346365
GCCGACCCGAAGTTCCTT
59.654
61.111
0.00
0.00
0.00
3.36
2060
8183
4.826733
TGACTATTGCTCATTGGTTGTTGT
59.173
37.500
0.00
0.00
0.00
3.32
2164
8287
2.369394
GTGCAGGGAAAATACCTCCTG
58.631
52.381
0.00
0.00
46.93
3.86
2220
8343
8.877864
TGAAGGTTAATGTATTTTCTCATGGT
57.122
30.769
0.00
0.00
0.00
3.55
2222
8345
7.881775
AGGTTAATGTATTTTCTCATGGTCC
57.118
36.000
0.00
0.00
0.00
4.46
2300
8423
1.604278
GACTGAAACTGAACTGCCACC
59.396
52.381
0.00
0.00
0.00
4.61
2303
8426
1.305201
GAAACTGAACTGCCACCGAA
58.695
50.000
0.00
0.00
0.00
4.30
2330
8453
4.072088
CGCCGCGACAAGTTCCAC
62.072
66.667
8.23
0.00
0.00
4.02
2357
8480
9.770097
TTGCTGAAACATATGAAATGGTTAAAA
57.230
25.926
10.38
0.00
0.00
1.52
2393
8516
5.689383
TGCCATCTCTTACAGTTTTGTTC
57.311
39.130
0.00
0.00
38.76
3.18
2495
8618
1.667724
CGCTGAAAATCGATGGCTCTT
59.332
47.619
0.00
0.00
0.00
2.85
2595
8719
1.392534
GGGAGGTTGAGAGGGAGGA
59.607
63.158
0.00
0.00
0.00
3.71
2602
8726
3.265479
AGGTTGAGAGGGAGGAAAATGAG
59.735
47.826
0.00
0.00
0.00
2.90
2626
8750
5.971792
GTGTAGTGCCTTTGACTTTTTCTTC
59.028
40.000
0.00
0.00
0.00
2.87
2671
8795
4.581077
TGATCTGATCAGGATTCGTGAG
57.419
45.455
22.42
2.31
33.59
3.51
2672
8796
3.320256
TGATCTGATCAGGATTCGTGAGG
59.680
47.826
22.42
7.51
33.59
3.86
2673
8797
3.018423
TCTGATCAGGATTCGTGAGGA
57.982
47.619
22.42
9.31
31.81
3.71
2674
8798
3.365472
TCTGATCAGGATTCGTGAGGAA
58.635
45.455
22.42
0.00
39.42
3.36
2675
8799
7.648810
TGATCTGATCAGGATTCGTGAGGAAT
61.649
42.308
22.42
0.00
40.19
3.01
2676
8800
4.406972
TCTGATCAGGATTCGTGAGGAATT
59.593
41.667
22.42
0.00
45.33
2.17
2677
8801
5.598417
TCTGATCAGGATTCGTGAGGAATTA
59.402
40.000
22.42
0.00
45.33
1.40
2678
8802
5.847304
TGATCAGGATTCGTGAGGAATTAG
58.153
41.667
13.83
0.00
45.33
1.73
2679
8803
5.598417
TGATCAGGATTCGTGAGGAATTAGA
59.402
40.000
13.83
1.96
45.33
2.10
2680
8804
5.932619
TCAGGATTCGTGAGGAATTAGAA
57.067
39.130
4.98
0.00
45.33
2.10
2681
8805
5.661458
TCAGGATTCGTGAGGAATTAGAAC
58.339
41.667
4.98
0.00
45.33
3.01
2682
8806
5.422331
TCAGGATTCGTGAGGAATTAGAACT
59.578
40.000
4.98
0.00
45.33
3.01
2683
8807
6.070767
TCAGGATTCGTGAGGAATTAGAACTT
60.071
38.462
4.98
0.00
45.33
2.66
2684
8808
6.036517
CAGGATTCGTGAGGAATTAGAACTTG
59.963
42.308
1.61
0.00
45.33
3.16
2685
8809
5.294552
GGATTCGTGAGGAATTAGAACTTGG
59.705
44.000
1.61
0.00
45.33
3.61
2686
8810
4.884668
TCGTGAGGAATTAGAACTTGGT
57.115
40.909
0.00
0.00
0.00
3.67
2687
8811
5.223449
TCGTGAGGAATTAGAACTTGGTT
57.777
39.130
0.00
0.00
0.00
3.67
2688
8812
4.994852
TCGTGAGGAATTAGAACTTGGTTG
59.005
41.667
0.00
0.00
0.00
3.77
2689
8813
4.994852
CGTGAGGAATTAGAACTTGGTTGA
59.005
41.667
0.00
0.00
0.00
3.18
2690
8814
5.643777
CGTGAGGAATTAGAACTTGGTTGAT
59.356
40.000
0.00
0.00
0.00
2.57
2691
8815
6.183360
CGTGAGGAATTAGAACTTGGTTGATC
60.183
42.308
0.00
0.00
0.00
2.92
2692
8816
6.881602
GTGAGGAATTAGAACTTGGTTGATCT
59.118
38.462
0.00
0.00
0.00
2.75
2693
8817
6.881065
TGAGGAATTAGAACTTGGTTGATCTG
59.119
38.462
0.00
0.00
0.00
2.90
2694
8818
7.020827
AGGAATTAGAACTTGGTTGATCTGA
57.979
36.000
0.00
0.00
0.00
3.27
2695
8819
7.637511
AGGAATTAGAACTTGGTTGATCTGAT
58.362
34.615
0.00
0.00
0.00
2.90
2696
8820
7.772757
AGGAATTAGAACTTGGTTGATCTGATC
59.227
37.037
10.72
10.72
0.00
2.92
2697
8821
7.554118
GGAATTAGAACTTGGTTGATCTGATCA
59.446
37.037
16.06
16.06
37.55
2.92
2698
8822
8.503458
AATTAGAACTTGGTTGATCTGATCAG
57.497
34.615
17.07
17.07
40.94
2.90
2699
8823
4.841422
AGAACTTGGTTGATCTGATCAGG
58.159
43.478
22.42
5.65
40.94
3.86
2700
8824
4.533707
AGAACTTGGTTGATCTGATCAGGA
59.466
41.667
22.42
9.81
40.94
3.86
2701
8825
5.191323
AGAACTTGGTTGATCTGATCAGGAT
59.809
40.000
22.42
13.99
40.94
3.24
2702
8826
5.447778
ACTTGGTTGATCTGATCAGGATT
57.552
39.130
22.42
8.06
40.94
3.01
2703
8827
5.435291
ACTTGGTTGATCTGATCAGGATTC
58.565
41.667
22.42
16.22
40.94
2.52
2704
8828
4.063998
TGGTTGATCTGATCAGGATTCG
57.936
45.455
22.42
0.00
40.94
3.34
2705
8829
3.452264
TGGTTGATCTGATCAGGATTCGT
59.548
43.478
22.42
2.55
40.94
3.85
2706
8830
3.806521
GGTTGATCTGATCAGGATTCGTG
59.193
47.826
22.42
0.00
40.94
4.35
2707
8831
4.442052
GGTTGATCTGATCAGGATTCGTGA
60.442
45.833
22.42
11.16
40.94
4.35
2777
8902
2.997897
GGTCCTCTGCCGTCCACT
60.998
66.667
0.00
0.00
0.00
4.00
2780
8905
2.997315
CCTCTGCCGTCCACTCCA
60.997
66.667
0.00
0.00
0.00
3.86
2789
8914
1.012086
CGTCCACTCCATCAGCATTG
58.988
55.000
0.00
0.00
0.00
2.82
2846
8971
2.951229
ACTTTGTGAATCCCCGTTCT
57.049
45.000
0.00
0.00
0.00
3.01
2863
8988
5.321516
CCGTTCTGTTCCGAAAATATTGTC
58.678
41.667
0.00
0.00
0.00
3.18
2973
9098
9.475620
TTGTATGGTATATATCCTGTACTGAGG
57.524
37.037
0.60
0.00
0.00
3.86
2974
9099
8.842764
TGTATGGTATATATCCTGTACTGAGGA
58.157
37.037
4.51
4.51
46.47
3.71
2975
9100
9.344772
GTATGGTATATATCCTGTACTGAGGAG
57.655
40.741
7.89
0.00
45.60
3.69
2983
9108
3.449018
TCCTGTACTGAGGAGAAGATTGC
59.551
47.826
0.60
0.00
37.20
3.56
2994
9119
5.457686
AGGAGAAGATTGCTCTGTCTAGAT
58.542
41.667
0.00
0.00
32.98
1.98
2999
9124
5.518848
AGATTGCTCTGTCTAGATGACTG
57.481
43.478
0.00
0.00
45.54
3.51
3015
9140
4.008074
TGACTGAGTTCCTGTGGATTTC
57.992
45.455
0.00
0.00
0.00
2.17
3032
9157
2.511145
CTGCTCGCCTGAAGCTCC
60.511
66.667
0.00
0.00
40.39
4.70
3033
9158
2.999648
TGCTCGCCTGAAGCTCCT
61.000
61.111
0.00
0.00
40.39
3.69
3034
9159
1.670949
CTGCTCGCCTGAAGCTCCTA
61.671
60.000
0.00
0.00
40.39
2.94
3035
9160
1.257750
TGCTCGCCTGAAGCTCCTAA
61.258
55.000
0.00
0.00
40.39
2.69
3036
9161
0.108138
GCTCGCCTGAAGCTCCTAAA
60.108
55.000
0.00
0.00
40.39
1.85
3037
9162
1.474143
GCTCGCCTGAAGCTCCTAAAT
60.474
52.381
0.00
0.00
40.39
1.40
3038
9163
2.208431
CTCGCCTGAAGCTCCTAAATG
58.792
52.381
0.00
0.00
40.39
2.32
3039
9164
0.659957
CGCCTGAAGCTCCTAAATGC
59.340
55.000
0.00
0.00
40.39
3.56
3040
9165
1.028130
GCCTGAAGCTCCTAAATGCC
58.972
55.000
0.00
0.00
38.99
4.40
3041
9166
1.685148
CCTGAAGCTCCTAAATGCCC
58.315
55.000
0.00
0.00
0.00
5.36
3042
9167
1.685148
CTGAAGCTCCTAAATGCCCC
58.315
55.000
0.00
0.00
0.00
5.80
3043
9168
0.258774
TGAAGCTCCTAAATGCCCCC
59.741
55.000
0.00
0.00
0.00
5.40
3058
9183
2.873797
CCCCCTAAGAAACAGCAGC
58.126
57.895
0.00
0.00
0.00
5.25
3059
9184
0.038166
CCCCCTAAGAAACAGCAGCA
59.962
55.000
0.00
0.00
0.00
4.41
3060
9185
1.457346
CCCCTAAGAAACAGCAGCAG
58.543
55.000
0.00
0.00
0.00
4.24
3061
9186
1.457346
CCCTAAGAAACAGCAGCAGG
58.543
55.000
0.00
0.00
0.00
4.85
3062
9187
0.807496
CCTAAGAAACAGCAGCAGGC
59.193
55.000
0.00
0.00
45.30
4.85
3072
9197
3.846955
GCAGCAGGCAATGGATTTT
57.153
47.368
0.00
0.00
43.97
1.82
3073
9198
2.103537
GCAGCAGGCAATGGATTTTT
57.896
45.000
0.00
0.00
43.97
1.94
3074
9199
1.735571
GCAGCAGGCAATGGATTTTTG
59.264
47.619
0.00
0.00
43.97
2.44
3075
9200
2.872842
GCAGCAGGCAATGGATTTTTGT
60.873
45.455
0.00
0.00
43.97
2.83
3076
9201
2.739913
CAGCAGGCAATGGATTTTTGTG
59.260
45.455
0.00
0.00
0.00
3.33
3077
9202
2.369532
AGCAGGCAATGGATTTTTGTGT
59.630
40.909
0.00
0.00
0.00
3.72
3078
9203
2.738314
GCAGGCAATGGATTTTTGTGTC
59.262
45.455
0.00
0.00
0.00
3.67
3079
9204
2.988493
CAGGCAATGGATTTTTGTGTCG
59.012
45.455
0.00
0.00
0.00
4.35
3080
9205
1.726248
GGCAATGGATTTTTGTGTCGC
59.274
47.619
0.00
0.00
0.00
5.19
3081
9206
2.610232
GGCAATGGATTTTTGTGTCGCT
60.610
45.455
0.00
0.00
0.00
4.93
3108
9233
6.010850
AGTCATTCTCAAGCCGGAGTATATA
58.989
40.000
5.05
0.00
36.30
0.86
3109
9234
6.665680
AGTCATTCTCAAGCCGGAGTATATAT
59.334
38.462
5.05
0.00
36.30
0.86
3151
9276
5.453567
TTCAGTCGATATCTGGGTATGTG
57.546
43.478
0.34
0.00
34.15
3.21
3152
9277
3.826729
TCAGTCGATATCTGGGTATGTGG
59.173
47.826
0.34
0.00
34.15
4.17
3153
9278
2.563179
AGTCGATATCTGGGTATGTGGC
59.437
50.000
0.34
0.00
0.00
5.01
3154
9279
2.299013
GTCGATATCTGGGTATGTGGCA
59.701
50.000
0.34
0.00
0.00
4.92
3155
9280
3.055819
GTCGATATCTGGGTATGTGGCAT
60.056
47.826
0.34
0.00
0.00
4.40
3156
9281
3.195610
TCGATATCTGGGTATGTGGCATC
59.804
47.826
0.34
0.00
0.00
3.91
3157
9282
3.196469
CGATATCTGGGTATGTGGCATCT
59.804
47.826
0.34
0.00
0.00
2.90
3158
9283
4.323028
CGATATCTGGGTATGTGGCATCTT
60.323
45.833
0.34
0.00
0.00
2.40
3159
9284
5.105351
CGATATCTGGGTATGTGGCATCTTA
60.105
44.000
0.34
0.00
0.00
2.10
3160
9285
4.630644
ATCTGGGTATGTGGCATCTTAG
57.369
45.455
0.00
0.00
0.00
2.18
3161
9286
3.384168
TCTGGGTATGTGGCATCTTAGT
58.616
45.455
0.00
0.00
0.00
2.24
3162
9287
3.134623
TCTGGGTATGTGGCATCTTAGTG
59.865
47.826
0.00
0.00
0.00
2.74
3163
9288
2.843730
TGGGTATGTGGCATCTTAGTGT
59.156
45.455
0.00
0.00
0.00
3.55
3164
9289
3.265737
TGGGTATGTGGCATCTTAGTGTT
59.734
43.478
0.00
0.00
0.00
3.32
3165
9290
3.627577
GGGTATGTGGCATCTTAGTGTTG
59.372
47.826
0.00
0.00
0.00
3.33
3166
9291
3.627577
GGTATGTGGCATCTTAGTGTTGG
59.372
47.826
0.00
0.00
0.00
3.77
3167
9292
3.719268
ATGTGGCATCTTAGTGTTGGA
57.281
42.857
0.00
0.00
0.00
3.53
3168
9293
3.719268
TGTGGCATCTTAGTGTTGGAT
57.281
42.857
0.00
0.00
0.00
3.41
3169
9294
3.346315
TGTGGCATCTTAGTGTTGGATG
58.654
45.455
0.00
0.00
39.59
3.51
3170
9295
3.244875
TGTGGCATCTTAGTGTTGGATGT
60.245
43.478
0.00
0.00
39.04
3.06
3171
9296
3.758554
GTGGCATCTTAGTGTTGGATGTT
59.241
43.478
0.00
0.00
39.04
2.71
3172
9297
4.218417
GTGGCATCTTAGTGTTGGATGTTT
59.782
41.667
0.00
0.00
39.04
2.83
3173
9298
4.458989
TGGCATCTTAGTGTTGGATGTTTC
59.541
41.667
0.00
0.00
39.04
2.78
3174
9299
4.702131
GGCATCTTAGTGTTGGATGTTTCT
59.298
41.667
0.00
0.00
39.04
2.52
3175
9300
5.183904
GGCATCTTAGTGTTGGATGTTTCTT
59.816
40.000
0.00
0.00
39.04
2.52
3176
9301
6.317857
GCATCTTAGTGTTGGATGTTTCTTC
58.682
40.000
0.00
0.00
39.04
2.87
3177
9302
6.623767
GCATCTTAGTGTTGGATGTTTCTTCC
60.624
42.308
0.00
0.00
39.04
3.46
3178
9303
5.935945
TCTTAGTGTTGGATGTTTCTTCCA
58.064
37.500
1.14
1.14
41.50
3.53
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
80
87
7.162082
CAGGTCAAGGACTTTGTACTATTTCT
58.838
38.462
0.00
0.00
38.01
2.52
104
111
2.170817
TGTGTTAGGGTGTGCTTGTACA
59.829
45.455
0.00
0.00
0.00
2.90
183
191
3.070734
GGATGATGACACATAGCTCCAGT
59.929
47.826
0.00
0.00
0.00
4.00
192
200
2.848694
AGGTTCAGGGATGATGACACAT
59.151
45.455
0.00
0.00
0.00
3.21
248
256
5.163109
TGCCATGGTTGAATATGATGACCTA
60.163
40.000
14.67
0.00
0.00
3.08
307
326
0.523966
CCTTGTATTTTTGGCGGCGA
59.476
50.000
12.98
0.00
0.00
5.54
554
1830
3.443925
CCGGCAGCGAGAGAGTGA
61.444
66.667
0.00
0.00
0.00
3.41
579
1855
2.961977
GCTAGTTCCCTCTCCCTCCATT
60.962
54.545
0.00
0.00
0.00
3.16
581
1857
0.032017
GCTAGTTCCCTCTCCCTCCA
60.032
60.000
0.00
0.00
0.00
3.86
656
1933
7.974501
GTCTCGTAACTTCTGGAAAGATCAATA
59.025
37.037
0.00
0.00
0.00
1.90
659
1936
5.243060
TGTCTCGTAACTTCTGGAAAGATCA
59.757
40.000
0.00
0.00
0.00
2.92
770
2112
8.553153
TGTGGGTATGAGGAGTTAATTTGATAA
58.447
33.333
0.00
0.00
0.00
1.75
809
4462
2.622064
AAGAAACCGAAGCACAGTCT
57.378
45.000
0.00
0.00
0.00
3.24
810
4463
4.056050
TCTTAAGAAACCGAAGCACAGTC
58.944
43.478
1.68
0.00
0.00
3.51
811
4464
4.058817
CTCTTAAGAAACCGAAGCACAGT
58.941
43.478
6.63
0.00
0.00
3.55
812
4465
4.150804
GTCTCTTAAGAAACCGAAGCACAG
59.849
45.833
6.63
0.00
31.93
3.66
813
4466
4.056050
GTCTCTTAAGAAACCGAAGCACA
58.944
43.478
6.63
0.00
31.93
4.57
814
4467
4.308265
AGTCTCTTAAGAAACCGAAGCAC
58.692
43.478
6.63
0.00
31.93
4.40
815
4468
4.602340
AGTCTCTTAAGAAACCGAAGCA
57.398
40.909
6.63
0.00
31.93
3.91
817
4470
4.152580
GGCAAGTCTCTTAAGAAACCGAAG
59.847
45.833
6.63
0.00
31.93
3.79
818
4471
4.062991
GGCAAGTCTCTTAAGAAACCGAA
58.937
43.478
6.63
0.00
31.93
4.30
819
4472
3.323979
AGGCAAGTCTCTTAAGAAACCGA
59.676
43.478
6.63
0.00
31.93
4.69
820
4473
3.665190
AGGCAAGTCTCTTAAGAAACCG
58.335
45.455
6.63
0.00
31.93
4.44
821
4474
5.299531
ACAAAGGCAAGTCTCTTAAGAAACC
59.700
40.000
6.63
2.37
31.93
3.27
822
4475
6.202226
CACAAAGGCAAGTCTCTTAAGAAAC
58.798
40.000
6.63
3.45
31.93
2.78
824
4477
4.275936
GCACAAAGGCAAGTCTCTTAAGAA
59.724
41.667
6.63
0.00
31.93
2.52
825
4478
3.815401
GCACAAAGGCAAGTCTCTTAAGA
59.185
43.478
4.81
4.81
0.00
2.10
826
4479
3.057946
GGCACAAAGGCAAGTCTCTTAAG
60.058
47.826
0.00
0.00
43.51
1.85
828
4481
2.504367
GGCACAAAGGCAAGTCTCTTA
58.496
47.619
0.00
0.00
43.51
2.10
829
4482
1.322442
GGCACAAAGGCAAGTCTCTT
58.678
50.000
0.00
0.00
43.51
2.85
830
4483
3.027419
GGCACAAAGGCAAGTCTCT
57.973
52.632
0.00
0.00
43.51
3.10
831
4484
5.920226
GTGATAGGCACAAAGGCAAGTCTC
61.920
50.000
0.00
0.00
46.91
3.36
832
4485
4.119903
GTGATAGGCACAAAGGCAAGTCT
61.120
47.826
0.00
0.00
46.91
3.24
834
4487
2.162681
GTGATAGGCACAAAGGCAAGT
58.837
47.619
0.00
0.00
46.91
3.16
846
4499
3.539604
GCTGGATCCATATGTGATAGGC
58.460
50.000
16.63
7.24
0.00
3.93
848
4501
3.431346
CCCGCTGGATCCATATGTGATAG
60.431
52.174
16.63
0.71
0.00
2.08
849
4502
2.501316
CCCGCTGGATCCATATGTGATA
59.499
50.000
16.63
0.00
0.00
2.15
850
4503
1.280133
CCCGCTGGATCCATATGTGAT
59.720
52.381
16.63
4.32
0.00
3.06
851
4504
0.686789
CCCGCTGGATCCATATGTGA
59.313
55.000
16.63
0.00
0.00
3.58
852
4505
0.397941
ACCCGCTGGATCCATATGTG
59.602
55.000
16.63
10.46
34.81
3.21
853
4506
0.397941
CACCCGCTGGATCCATATGT
59.602
55.000
16.63
7.68
34.81
2.29
854
4507
0.321919
CCACCCGCTGGATCCATATG
60.322
60.000
16.63
4.84
43.95
1.78
855
4508
2.069776
CCACCCGCTGGATCCATAT
58.930
57.895
16.63
0.00
43.95
1.78
856
4509
2.818169
GCCACCCGCTGGATCCATA
61.818
63.158
16.63
0.00
43.95
2.74
857
4510
4.195334
GCCACCCGCTGGATCCAT
62.195
66.667
16.63
0.00
43.95
3.41
869
4522
2.779742
TTACATGTGGGCCAGCCACC
62.780
60.000
6.40
0.00
37.38
4.61
871
4524
1.001020
CTTACATGTGGGCCAGCCA
60.001
57.895
6.40
1.84
37.98
4.75
873
4526
1.754234
CCCTTACATGTGGGCCAGC
60.754
63.158
6.40
2.28
36.61
4.85
874
4527
0.394352
GTCCCTTACATGTGGGCCAG
60.394
60.000
6.40
0.00
43.04
4.85
875
4528
1.688811
GTCCCTTACATGTGGGCCA
59.311
57.895
15.11
0.00
43.04
5.36
876
4529
1.076995
GGTCCCTTACATGTGGGCC
60.077
63.158
15.11
11.92
43.04
5.80
877
4530
1.076995
GGGTCCCTTACATGTGGGC
60.077
63.158
15.11
6.57
43.04
5.36
878
4531
0.701731
TTGGGTCCCTTACATGTGGG
59.298
55.000
13.98
13.98
44.66
4.61
881
4534
2.714250
TGTCTTTGGGTCCCTTACATGT
59.286
45.455
10.00
2.69
0.00
3.21
882
4535
3.347216
CTGTCTTTGGGTCCCTTACATG
58.653
50.000
10.00
0.00
0.00
3.21
883
4536
2.308866
CCTGTCTTTGGGTCCCTTACAT
59.691
50.000
10.00
0.00
0.00
2.29
886
4539
1.702957
CACCTGTCTTTGGGTCCCTTA
59.297
52.381
10.00
0.00
32.95
2.69
887
4540
0.478507
CACCTGTCTTTGGGTCCCTT
59.521
55.000
10.00
0.00
32.95
3.95
888
4541
2.069165
GCACCTGTCTTTGGGTCCCT
62.069
60.000
10.00
0.00
32.95
4.20
889
4542
1.603739
GCACCTGTCTTTGGGTCCC
60.604
63.158
0.00
0.00
32.95
4.46
890
4543
1.603739
GGCACCTGTCTTTGGGTCC
60.604
63.158
0.00
0.00
32.95
4.46
891
4544
0.178990
AAGGCACCTGTCTTTGGGTC
60.179
55.000
0.00
0.00
36.42
4.46
892
4545
0.261696
AAAGGCACCTGTCTTTGGGT
59.738
50.000
4.08
0.00
46.92
4.51
893
4546
3.131850
AAAGGCACCTGTCTTTGGG
57.868
52.632
4.08
0.00
46.92
4.12
897
4550
1.898574
CCGCAAAGGCACCTGTCTT
60.899
57.895
0.00
0.00
42.58
3.01
907
4560
2.256461
GCTTCAGTGCCGCAAAGG
59.744
61.111
0.00
0.00
44.97
3.11
908
4561
1.081641
CAGCTTCAGTGCCGCAAAG
60.082
57.895
0.00
0.00
0.00
2.77
909
4562
3.033184
CAGCTTCAGTGCCGCAAA
58.967
55.556
0.00
0.00
0.00
3.68
910
4563
3.663176
GCAGCTTCAGTGCCGCAA
61.663
61.111
0.00
0.00
36.47
4.85
911
4564
4.631247
AGCAGCTTCAGTGCCGCA
62.631
61.111
0.00
0.00
42.24
5.69
912
4565
3.797546
GAGCAGCTTCAGTGCCGC
61.798
66.667
0.00
0.00
42.24
6.53
913
4566
3.123620
GGAGCAGCTTCAGTGCCG
61.124
66.667
0.00
0.00
42.24
5.69
914
4567
2.033141
TGGAGCAGCTTCAGTGCC
59.967
61.111
0.00
0.00
42.24
5.01
915
4568
1.302351
AGTGGAGCAGCTTCAGTGC
60.302
57.895
10.59
0.00
41.54
4.40
916
4569
0.954449
CCAGTGGAGCAGCTTCAGTG
60.954
60.000
26.66
26.66
39.46
3.66
918
4571
2.039405
GCCAGTGGAGCAGCTTCAG
61.039
63.158
15.20
0.00
0.00
3.02
919
4572
2.033141
GCCAGTGGAGCAGCTTCA
59.967
61.111
15.20
0.00
0.00
3.02
921
4574
2.350514
GAGCCAGTGGAGCAGCTT
59.649
61.111
15.20
0.00
35.23
3.74
922
4575
3.715097
GGAGCCAGTGGAGCAGCT
61.715
66.667
15.20
1.09
38.56
4.24
923
4576
4.792804
GGGAGCCAGTGGAGCAGC
62.793
72.222
15.20
0.00
0.00
5.25
924
4577
1.267574
TAAGGGAGCCAGTGGAGCAG
61.268
60.000
15.20
0.00
0.00
4.24
925
4578
1.229496
TAAGGGAGCCAGTGGAGCA
60.229
57.895
15.20
0.00
0.00
4.26
926
4579
1.524482
CTAAGGGAGCCAGTGGAGC
59.476
63.158
15.20
2.88
0.00
4.70
928
4581
3.727387
GCTAAGGGAGCCAGTGGA
58.273
61.111
15.20
0.00
46.41
4.02
942
4628
0.179468
GTAGGGTTTGGCGATGGCTA
59.821
55.000
0.00
0.00
39.81
3.93
943
4629
1.077716
GTAGGGTTTGGCGATGGCT
60.078
57.895
0.00
0.00
39.81
4.75
1113
7224
3.376078
GTGGAGGTGGTCGCGGTA
61.376
66.667
6.13
0.00
0.00
4.02
1211
7334
1.413662
GGGACCTGAGATGGGAGATGA
60.414
57.143
0.00
0.00
0.00
2.92
1308
7431
2.920912
AGGAACTTCGGGTCGGCA
60.921
61.111
0.00
0.00
27.25
5.69
2060
8183
3.181433
TGACCTGAAGTACCTCTCACTCA
60.181
47.826
0.00
0.00
0.00
3.41
2164
8287
4.918810
AAATGTGTCAAGGTTTGAGGTC
57.081
40.909
0.00
0.00
41.01
3.85
2206
8329
8.150945
TGAATAGCTAGGACCATGAGAAAATAC
58.849
37.037
0.00
0.00
0.00
1.89
2300
8423
1.347221
GCGGCGGTCAATAAGTTCG
59.653
57.895
9.78
0.00
0.00
3.95
2303
8426
1.808390
GTCGCGGCGGTCAATAAGT
60.808
57.895
23.46
0.00
0.00
2.24
2330
8453
8.984891
TTAACCATTTCATATGTTTCAGCAAG
57.015
30.769
1.90
0.00
0.00
4.01
2366
8489
5.695851
AAACTGTAAGAGATGGCAACAAG
57.304
39.130
0.00
0.00
46.38
3.16
2403
8526
8.997621
TTCGTCTATTTTACTTGCTTCATACT
57.002
30.769
0.00
0.00
0.00
2.12
2420
8543
9.778741
ATGATGTTATACCACAATTTCGTCTAT
57.221
29.630
0.00
0.00
0.00
1.98
2460
8583
1.599518
AGCGCCCAACAACGAATGA
60.600
52.632
2.29
0.00
0.00
2.57
2461
8584
1.442520
CAGCGCCCAACAACGAATG
60.443
57.895
2.29
0.00
0.00
2.67
2467
8590
0.039617
CGATTTTCAGCGCCCAACAA
60.040
50.000
2.29
0.00
0.00
2.83
2595
8719
5.133221
AGTCAAAGGCACTACACTCATTTT
58.867
37.500
0.00
0.00
38.49
1.82
2602
8726
5.500645
AGAAAAAGTCAAAGGCACTACAC
57.499
39.130
0.00
0.00
38.49
2.90
2671
8795
7.554118
TGATCAGATCAACCAAGTTCTAATTCC
59.446
37.037
10.93
0.00
36.11
3.01
2672
8796
8.498054
TGATCAGATCAACCAAGTTCTAATTC
57.502
34.615
10.93
0.00
36.11
2.17
2673
8797
7.555554
CCTGATCAGATCAACCAAGTTCTAATT
59.444
37.037
24.62
0.00
39.11
1.40
2674
8798
7.052873
CCTGATCAGATCAACCAAGTTCTAAT
58.947
38.462
24.62
0.00
39.11
1.73
2675
8799
6.213397
TCCTGATCAGATCAACCAAGTTCTAA
59.787
38.462
24.62
0.00
39.11
2.10
2676
8800
5.721480
TCCTGATCAGATCAACCAAGTTCTA
59.279
40.000
24.62
0.00
39.11
2.10
2677
8801
4.533707
TCCTGATCAGATCAACCAAGTTCT
59.466
41.667
24.62
0.00
39.11
3.01
2678
8802
4.836825
TCCTGATCAGATCAACCAAGTTC
58.163
43.478
24.62
0.00
39.11
3.01
2679
8803
4.916041
TCCTGATCAGATCAACCAAGTT
57.084
40.909
24.62
0.00
39.11
2.66
2680
8804
5.435291
GAATCCTGATCAGATCAACCAAGT
58.565
41.667
24.62
0.00
39.11
3.16
2681
8805
4.510711
CGAATCCTGATCAGATCAACCAAG
59.489
45.833
24.62
3.94
39.11
3.61
2682
8806
4.080919
ACGAATCCTGATCAGATCAACCAA
60.081
41.667
24.62
1.08
39.11
3.67
2683
8807
3.452264
ACGAATCCTGATCAGATCAACCA
59.548
43.478
24.62
1.78
39.11
3.67
2684
8808
3.806521
CACGAATCCTGATCAGATCAACC
59.193
47.826
24.62
6.95
39.11
3.77
2685
8809
4.686972
TCACGAATCCTGATCAGATCAAC
58.313
43.478
24.62
9.92
39.11
3.18
2686
8810
4.202192
CCTCACGAATCCTGATCAGATCAA
60.202
45.833
24.62
6.89
39.11
2.57
2687
8811
3.320256
CCTCACGAATCCTGATCAGATCA
59.680
47.826
24.62
12.74
37.76
2.92
2688
8812
3.571828
TCCTCACGAATCCTGATCAGATC
59.428
47.826
24.62
16.58
0.00
2.75
2689
8813
3.570540
TCCTCACGAATCCTGATCAGAT
58.429
45.455
24.62
12.36
0.00
2.90
2690
8814
3.018423
TCCTCACGAATCCTGATCAGA
57.982
47.619
24.62
10.55
0.00
3.27
2691
8815
3.808466
TTCCTCACGAATCCTGATCAG
57.192
47.619
16.24
16.24
0.00
2.90
2692
8816
4.760530
AATTCCTCACGAATCCTGATCA
57.239
40.909
0.00
0.00
40.47
2.92
2693
8817
6.090483
TCTAATTCCTCACGAATCCTGATC
57.910
41.667
0.00
0.00
40.47
2.92
2694
8818
6.098982
AGTTCTAATTCCTCACGAATCCTGAT
59.901
38.462
0.00
0.00
40.47
2.90
2695
8819
5.422331
AGTTCTAATTCCTCACGAATCCTGA
59.578
40.000
0.00
0.00
40.47
3.86
2696
8820
5.665459
AGTTCTAATTCCTCACGAATCCTG
58.335
41.667
0.00
0.00
40.47
3.86
2697
8821
5.941555
AGTTCTAATTCCTCACGAATCCT
57.058
39.130
0.00
0.00
40.47
3.24
2698
8822
6.594159
TCAAAGTTCTAATTCCTCACGAATCC
59.406
38.462
0.00
0.00
40.47
3.01
2699
8823
7.596749
TCAAAGTTCTAATTCCTCACGAATC
57.403
36.000
0.00
0.00
40.47
2.52
2700
8824
6.092807
GCTCAAAGTTCTAATTCCTCACGAAT
59.907
38.462
0.00
0.00
43.34
3.34
2701
8825
5.408604
GCTCAAAGTTCTAATTCCTCACGAA
59.591
40.000
0.00
0.00
34.14
3.85
2702
8826
4.929808
GCTCAAAGTTCTAATTCCTCACGA
59.070
41.667
0.00
0.00
0.00
4.35
2703
8827
4.690748
TGCTCAAAGTTCTAATTCCTCACG
59.309
41.667
0.00
0.00
0.00
4.35
2704
8828
6.348868
CCTTGCTCAAAGTTCTAATTCCTCAC
60.349
42.308
0.00
0.00
33.66
3.51
2705
8829
5.707298
CCTTGCTCAAAGTTCTAATTCCTCA
59.293
40.000
0.00
0.00
33.66
3.86
2706
8830
5.707764
ACCTTGCTCAAAGTTCTAATTCCTC
59.292
40.000
0.00
0.00
33.66
3.71
2707
8831
5.635120
ACCTTGCTCAAAGTTCTAATTCCT
58.365
37.500
0.00
0.00
33.66
3.36
2777
8902
0.251698
TTGGTGGCAATGCTGATGGA
60.252
50.000
4.82
0.00
0.00
3.41
2780
8905
0.899720
CCTTTGGTGGCAATGCTGAT
59.100
50.000
4.82
0.00
0.00
2.90
2846
8971
3.997681
TGCTCGACAATATTTTCGGAACA
59.002
39.130
20.57
14.28
35.89
3.18
2973
9098
6.208644
GTCATCTAGACAGAGCAATCTTCTC
58.791
44.000
0.00
0.00
46.77
2.87
2974
9099
6.147864
GTCATCTAGACAGAGCAATCTTCT
57.852
41.667
0.00
0.00
46.77
2.85
2994
9119
3.648067
AGAAATCCACAGGAACTCAGTCA
59.352
43.478
0.00
0.00
34.60
3.41
2999
9124
3.006247
GAGCAGAAATCCACAGGAACTC
58.994
50.000
0.00
0.00
34.60
3.01
3040
9165
0.038166
TGCTGCTGTTTCTTAGGGGG
59.962
55.000
0.00
0.00
0.00
5.40
3041
9166
1.457346
CTGCTGCTGTTTCTTAGGGG
58.543
55.000
0.00
0.00
0.00
4.79
3042
9167
1.457346
CCTGCTGCTGTTTCTTAGGG
58.543
55.000
0.00
0.00
0.00
3.53
3043
9168
0.807496
GCCTGCTGCTGTTTCTTAGG
59.193
55.000
0.00
0.00
36.87
2.69
3044
9169
1.527034
TGCCTGCTGCTGTTTCTTAG
58.473
50.000
0.00
0.00
42.00
2.18
3045
9170
1.979855
TTGCCTGCTGCTGTTTCTTA
58.020
45.000
0.00
0.00
42.00
2.10
3046
9171
1.000506
CATTGCCTGCTGCTGTTTCTT
59.999
47.619
0.00
0.00
42.00
2.52
3047
9172
0.601558
CATTGCCTGCTGCTGTTTCT
59.398
50.000
0.00
0.00
42.00
2.52
3048
9173
0.389426
CCATTGCCTGCTGCTGTTTC
60.389
55.000
0.00
0.00
42.00
2.78
3049
9174
0.828762
TCCATTGCCTGCTGCTGTTT
60.829
50.000
0.00
0.00
42.00
2.83
3050
9175
0.613853
ATCCATTGCCTGCTGCTGTT
60.614
50.000
0.00
0.00
42.00
3.16
3051
9176
0.613853
AATCCATTGCCTGCTGCTGT
60.614
50.000
0.00
0.00
42.00
4.40
3052
9177
0.535335
AAATCCATTGCCTGCTGCTG
59.465
50.000
0.00
0.00
42.00
4.41
3053
9178
1.272807
AAAATCCATTGCCTGCTGCT
58.727
45.000
0.00
0.00
42.00
4.24
3054
9179
1.735571
CAAAAATCCATTGCCTGCTGC
59.264
47.619
0.00
0.00
41.77
5.25
3055
9180
2.739913
CACAAAAATCCATTGCCTGCTG
59.260
45.455
0.00
0.00
0.00
4.41
3056
9181
2.369532
ACACAAAAATCCATTGCCTGCT
59.630
40.909
0.00
0.00
0.00
4.24
3057
9182
2.738314
GACACAAAAATCCATTGCCTGC
59.262
45.455
0.00
0.00
0.00
4.85
3058
9183
2.988493
CGACACAAAAATCCATTGCCTG
59.012
45.455
0.00
0.00
0.00
4.85
3059
9184
2.610232
GCGACACAAAAATCCATTGCCT
60.610
45.455
0.00
0.00
0.00
4.75
3060
9185
1.726248
GCGACACAAAAATCCATTGCC
59.274
47.619
0.00
0.00
0.00
4.52
3061
9186
2.663119
GAGCGACACAAAAATCCATTGC
59.337
45.455
0.00
0.00
0.00
3.56
3062
9187
4.164822
AGAGCGACACAAAAATCCATTG
57.835
40.909
0.00
0.00
0.00
2.82
3063
9188
5.003804
ACTAGAGCGACACAAAAATCCATT
58.996
37.500
0.00
0.00
0.00
3.16
3064
9189
4.579869
ACTAGAGCGACACAAAAATCCAT
58.420
39.130
0.00
0.00
0.00
3.41
3065
9190
3.994392
GACTAGAGCGACACAAAAATCCA
59.006
43.478
0.00
0.00
0.00
3.41
3066
9191
3.994392
TGACTAGAGCGACACAAAAATCC
59.006
43.478
0.00
0.00
0.00
3.01
3067
9192
5.786401
ATGACTAGAGCGACACAAAAATC
57.214
39.130
0.00
0.00
0.00
2.17
3068
9193
5.934625
AGAATGACTAGAGCGACACAAAAAT
59.065
36.000
0.00
0.00
0.00
1.82
3069
9194
5.297547
AGAATGACTAGAGCGACACAAAAA
58.702
37.500
0.00
0.00
0.00
1.94
3070
9195
4.883083
AGAATGACTAGAGCGACACAAAA
58.117
39.130
0.00
0.00
0.00
2.44
3071
9196
4.022329
TGAGAATGACTAGAGCGACACAAA
60.022
41.667
0.00
0.00
0.00
2.83
3072
9197
3.506067
TGAGAATGACTAGAGCGACACAA
59.494
43.478
0.00
0.00
0.00
3.33
3073
9198
3.081804
TGAGAATGACTAGAGCGACACA
58.918
45.455
0.00
0.00
0.00
3.72
3074
9199
3.766676
TGAGAATGACTAGAGCGACAC
57.233
47.619
0.00
0.00
0.00
3.67
3075
9200
3.428180
GCTTGAGAATGACTAGAGCGACA
60.428
47.826
0.00
0.00
0.00
4.35
3076
9201
3.112580
GCTTGAGAATGACTAGAGCGAC
58.887
50.000
0.00
0.00
0.00
5.19
3077
9202
2.099921
GGCTTGAGAATGACTAGAGCGA
59.900
50.000
0.00
0.00
0.00
4.93
3078
9203
2.468831
GGCTTGAGAATGACTAGAGCG
58.531
52.381
0.00
0.00
0.00
5.03
3079
9204
2.468831
CGGCTTGAGAATGACTAGAGC
58.531
52.381
0.00
0.00
0.00
4.09
3080
9205
2.690497
TCCGGCTTGAGAATGACTAGAG
59.310
50.000
0.00
0.00
0.00
2.43
3081
9206
2.690497
CTCCGGCTTGAGAATGACTAGA
59.310
50.000
0.00
0.00
34.11
2.43
3108
9233
0.249699
TCGACGAACCTGTGTGCAAT
60.250
50.000
0.00
0.00
0.00
3.56
3109
9234
0.249699
ATCGACGAACCTGTGTGCAA
60.250
50.000
0.00
0.00
0.00
4.08
3141
9266
3.118261
ACACTAAGATGCCACATACCCAG
60.118
47.826
0.00
0.00
0.00
4.45
3151
9276
4.702131
AGAAACATCCAACACTAAGATGCC
59.298
41.667
0.00
0.00
40.87
4.40
3152
9277
5.886960
AGAAACATCCAACACTAAGATGC
57.113
39.130
0.00
0.00
40.87
3.91
3153
9278
6.430925
TGGAAGAAACATCCAACACTAAGATG
59.569
38.462
0.00
0.00
43.84
2.90
3154
9279
6.542821
TGGAAGAAACATCCAACACTAAGAT
58.457
36.000
0.00
0.00
43.84
2.40
3155
9280
5.935945
TGGAAGAAACATCCAACACTAAGA
58.064
37.500
0.00
0.00
43.84
2.10
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.