Multiple sequence alignment - TraesCS7D01G183400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G183400 chr7D 100.000 4210 0 0 1 4210 136593206 136588997 0.000000e+00 7775
1 TraesCS7D01G183400 chr7D 99.500 200 1 0 1 200 100286031 100285832 8.600000e-97 364
2 TraesCS7D01G183400 chr7D 95.312 64 3 0 3388 3451 136589757 136589694 7.450000e-18 102
3 TraesCS7D01G183400 chr7D 95.312 64 3 0 3450 3513 136589819 136589756 7.450000e-18 102
4 TraesCS7D01G183400 chr7B 93.680 2595 129 12 331 2911 100032495 100029922 0.000000e+00 3851
5 TraesCS7D01G183400 chr7B 90.716 517 39 7 2938 3451 100029767 100029257 0.000000e+00 680
6 TraesCS7D01G183400 chr7B 81.439 431 50 17 3770 4188 100029084 100028672 4.060000e-85 326
7 TraesCS7D01G183400 chr7B 91.573 178 13 2 3469 3645 100029300 100029124 1.170000e-60 244
8 TraesCS7D01G183400 chr7A 92.203 1911 118 19 512 2403 136351430 136349532 0.000000e+00 2675
9 TraesCS7D01G183400 chr7A 91.531 980 63 10 2481 3451 136349039 136348071 0.000000e+00 1332
10 TraesCS7D01G183400 chr7A 91.577 558 41 5 944 1500 136393899 136393347 0.000000e+00 765
11 TraesCS7D01G183400 chr7A 86.618 680 62 17 197 854 136403275 136402603 0.000000e+00 725
12 TraesCS7D01G183400 chr7A 94.340 212 11 1 3463 3674 136348120 136347910 1.460000e-84 324
13 TraesCS7D01G183400 chr1D 99.024 205 2 0 1 205 452642385 452642589 6.650000e-98 368
14 TraesCS7D01G183400 chr1D 98.529 204 3 0 1 204 295173836 295173633 1.110000e-95 361
15 TraesCS7D01G183400 chr1D 99.490 196 1 0 1 196 95786002 95786197 1.440000e-94 357
16 TraesCS7D01G183400 chr4D 99.497 199 1 0 1 199 3516017 3515819 3.090000e-96 363
17 TraesCS7D01G183400 chr2D 96.804 219 4 3 1 217 25726870 25727087 3.090000e-96 363
18 TraesCS7D01G183400 chr2D 95.946 222 8 1 1 221 165501632 165501853 4.000000e-95 359
19 TraesCS7D01G183400 chr2D 95.556 90 4 0 3682 3771 644585152 644585241 1.220000e-30 145
20 TraesCS7D01G183400 chr2D 96.512 86 3 0 3682 3767 577622626 577622711 4.390000e-30 143
21 TraesCS7D01G183400 chr2D 94.505 91 5 0 3682 3772 587588958 587589048 1.580000e-29 141
22 TraesCS7D01G183400 chrUn 99.487 195 1 0 3 197 273476523 273476717 5.180000e-94 355
23 TraesCS7D01G183400 chrUn 92.045 88 4 2 3687 3772 2784328 2784414 2.060000e-23 121
24 TraesCS7D01G183400 chrUn 92.941 85 3 2 3690 3772 215552410 215552327 2.060000e-23 121
25 TraesCS7D01G183400 chr5D 97.596 208 4 1 3 210 35569747 35569541 5.180000e-94 355
26 TraesCS7D01G183400 chr6D 84.120 233 37 0 1324 1556 389592147 389591915 4.240000e-55 226
27 TraesCS7D01G183400 chr6A 83.262 233 39 0 1324 1556 535984643 535984411 9.170000e-52 215
28 TraesCS7D01G183400 chr6A 92.308 91 7 0 3682 3772 383079732 383079642 3.420000e-26 130
29 TraesCS7D01G183400 chr6B 89.349 169 18 0 1856 2024 582866919 582866751 3.300000e-51 213
30 TraesCS7D01G183400 chr6B 82.833 233 40 0 1324 1556 582867590 582867358 4.270000e-50 209
31 TraesCS7D01G183400 chr2B 94.505 91 5 0 3682 3772 705358149 705358239 1.580000e-29 141
32 TraesCS7D01G183400 chr5B 93.023 86 6 0 3682 3767 645540877 645540792 4.420000e-25 126
33 TraesCS7D01G183400 chr1B 92.045 88 4 2 3687 3772 36815945 36816031 2.060000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G183400 chr7D 136588997 136593206 4209 True 2659.666667 7775 96.874667 1 4210 3 chr7D.!!$R2 4209
1 TraesCS7D01G183400 chr7B 100028672 100032495 3823 True 1275.250000 3851 89.352000 331 4188 4 chr7B.!!$R1 3857
2 TraesCS7D01G183400 chr7A 136347910 136351430 3520 True 1443.666667 2675 92.691333 512 3674 3 chr7A.!!$R3 3162
3 TraesCS7D01G183400 chr7A 136393347 136393899 552 True 765.000000 765 91.577000 944 1500 1 chr7A.!!$R1 556
4 TraesCS7D01G183400 chr7A 136402603 136403275 672 True 725.000000 725 86.618000 197 854 1 chr7A.!!$R2 657
5 TraesCS7D01G183400 chr6B 582866751 582867590 839 True 211.000000 213 86.091000 1324 2024 2 chr6B.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.101219 GGGGCATCGCATGTTCTTTC 59.899 55.0 0.00 0.0 0.00 2.62 F
280 281 0.398806 GGGTAGGAAGGAGGAGGGAC 60.399 65.0 0.00 0.0 0.00 4.46 F
398 406 0.480690 ATGCCACCAACCCTAACACA 59.519 50.0 0.00 0.0 0.00 3.72 F
647 662 0.589223 CTAGATCTCTCCGACGTGCC 59.411 60.0 0.00 0.0 0.00 5.01 F
2391 2590 1.056660 TTGACTTCCCAGGAGGTGAC 58.943 55.0 6.14 0.0 34.53 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2173 0.946221 AAGAAACGGCTCTGTCTGCG 60.946 55.000 0.00 0.0 0.00 5.18 R
2063 2256 2.035961 TGCTGTAAGGCTCGTATCATCC 59.964 50.000 0.00 0.0 0.00 3.51 R
2071 2264 3.896648 TTTTTCTTGCTGTAAGGCTCG 57.103 42.857 5.66 0.0 37.01 5.03 R
2420 2619 0.171231 GCCAAATCAAACGAGGAGGC 59.829 55.000 0.00 0.0 0.00 4.70 R
3780 4539 0.035458 GCGGAGTTGGGATATGGGAG 59.965 60.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.659361 CTACTCTCACATGACCAATCTTTG 57.341 41.667 0.00 0.00 0.00 2.77
47 48 8.760980 TGGATAATTCCTTAATAACACCTTGG 57.239 34.615 0.00 0.00 43.07 3.61
48 49 8.340757 TGGATAATTCCTTAATAACACCTTGGT 58.659 33.333 0.00 0.00 43.07 3.67
49 50 8.847196 GGATAATTCCTTAATAACACCTTGGTC 58.153 37.037 0.00 0.00 39.14 4.02
50 51 9.403583 GATAATTCCTTAATAACACCTTGGTCA 57.596 33.333 0.00 0.00 0.00 4.02
51 52 7.462571 AATTCCTTAATAACACCTTGGTCAC 57.537 36.000 0.00 0.00 0.00 3.67
52 53 4.913784 TCCTTAATAACACCTTGGTCACC 58.086 43.478 0.00 0.00 0.00 4.02
53 54 4.351407 TCCTTAATAACACCTTGGTCACCA 59.649 41.667 0.00 0.00 0.00 4.17
54 55 4.457949 CCTTAATAACACCTTGGTCACCAC 59.542 45.833 0.00 0.00 30.78 4.16
55 56 3.586470 AATAACACCTTGGTCACCACA 57.414 42.857 0.00 0.00 30.78 4.17
56 57 3.806949 ATAACACCTTGGTCACCACAT 57.193 42.857 0.00 0.00 30.78 3.21
57 58 4.919774 ATAACACCTTGGTCACCACATA 57.080 40.909 0.00 0.00 30.78 2.29
58 59 3.586470 AACACCTTGGTCACCACATAA 57.414 42.857 0.00 0.00 30.78 1.90
59 60 3.586470 ACACCTTGGTCACCACATAAA 57.414 42.857 0.00 0.00 30.78 1.40
60 61 3.219281 ACACCTTGGTCACCACATAAAC 58.781 45.455 0.00 0.00 30.78 2.01
61 62 3.117663 ACACCTTGGTCACCACATAAACT 60.118 43.478 0.00 0.00 30.78 2.66
62 63 3.502211 CACCTTGGTCACCACATAAACTC 59.498 47.826 0.00 0.00 30.78 3.01
63 64 3.081804 CCTTGGTCACCACATAAACTCC 58.918 50.000 0.00 0.00 30.78 3.85
64 65 3.244911 CCTTGGTCACCACATAAACTCCT 60.245 47.826 0.00 0.00 30.78 3.69
65 66 4.398319 CTTGGTCACCACATAAACTCCTT 58.602 43.478 0.00 0.00 30.78 3.36
66 67 3.750371 TGGTCACCACATAAACTCCTTG 58.250 45.455 0.00 0.00 0.00 3.61
67 68 3.392947 TGGTCACCACATAAACTCCTTGA 59.607 43.478 0.00 0.00 0.00 3.02
68 69 4.141367 TGGTCACCACATAAACTCCTTGAA 60.141 41.667 0.00 0.00 0.00 2.69
69 70 4.825085 GGTCACCACATAAACTCCTTGAAA 59.175 41.667 0.00 0.00 0.00 2.69
70 71 5.278315 GGTCACCACATAAACTCCTTGAAAC 60.278 44.000 0.00 0.00 0.00 2.78
71 72 4.825085 TCACCACATAAACTCCTTGAAACC 59.175 41.667 0.00 0.00 0.00 3.27
72 73 4.582656 CACCACATAAACTCCTTGAAACCA 59.417 41.667 0.00 0.00 0.00 3.67
73 74 5.068460 CACCACATAAACTCCTTGAAACCAA 59.932 40.000 0.00 0.00 0.00 3.67
74 75 5.068591 ACCACATAAACTCCTTGAAACCAAC 59.931 40.000 0.00 0.00 0.00 3.77
75 76 5.068460 CCACATAAACTCCTTGAAACCAACA 59.932 40.000 0.00 0.00 0.00 3.33
76 77 5.977129 CACATAAACTCCTTGAAACCAACAC 59.023 40.000 0.00 0.00 0.00 3.32
77 78 5.654650 ACATAAACTCCTTGAAACCAACACA 59.345 36.000 0.00 0.00 0.00 3.72
78 79 6.323739 ACATAAACTCCTTGAAACCAACACAT 59.676 34.615 0.00 0.00 0.00 3.21
79 80 4.654091 AACTCCTTGAAACCAACACATG 57.346 40.909 0.00 0.00 0.00 3.21
94 95 4.510038 ACACATGGACTTCAAGAAATGC 57.490 40.909 0.00 0.00 0.00 3.56
95 96 3.256631 ACACATGGACTTCAAGAAATGCC 59.743 43.478 0.00 0.00 0.00 4.40
96 97 3.508793 CACATGGACTTCAAGAAATGCCT 59.491 43.478 0.00 0.00 0.00 4.75
97 98 4.701651 CACATGGACTTCAAGAAATGCCTA 59.298 41.667 0.00 0.00 0.00 3.93
98 99 5.359009 CACATGGACTTCAAGAAATGCCTAT 59.641 40.000 0.00 0.00 0.00 2.57
99 100 5.359009 ACATGGACTTCAAGAAATGCCTATG 59.641 40.000 0.00 0.00 0.00 2.23
100 101 4.272489 TGGACTTCAAGAAATGCCTATGG 58.728 43.478 0.00 0.00 0.00 2.74
101 102 4.018506 TGGACTTCAAGAAATGCCTATGGA 60.019 41.667 0.00 0.00 0.00 3.41
102 103 4.336713 GGACTTCAAGAAATGCCTATGGAC 59.663 45.833 0.00 0.00 0.00 4.02
103 104 4.922206 ACTTCAAGAAATGCCTATGGACA 58.078 39.130 0.00 0.00 0.00 4.02
104 105 5.324409 ACTTCAAGAAATGCCTATGGACAA 58.676 37.500 0.00 0.00 0.00 3.18
105 106 5.774690 ACTTCAAGAAATGCCTATGGACAAA 59.225 36.000 0.00 0.00 0.00 2.83
106 107 6.438425 ACTTCAAGAAATGCCTATGGACAAAT 59.562 34.615 0.00 0.00 0.00 2.32
107 108 6.455360 TCAAGAAATGCCTATGGACAAATC 57.545 37.500 0.00 0.00 0.00 2.17
108 109 5.360714 TCAAGAAATGCCTATGGACAAATCC 59.639 40.000 0.00 0.00 46.48 3.01
109 110 5.134725 AGAAATGCCTATGGACAAATCCT 57.865 39.130 0.00 0.00 46.43 3.24
110 111 5.522641 AGAAATGCCTATGGACAAATCCTT 58.477 37.500 0.00 0.00 46.43 3.36
111 112 5.595952 AGAAATGCCTATGGACAAATCCTTC 59.404 40.000 0.00 0.00 46.43 3.46
112 113 4.524802 ATGCCTATGGACAAATCCTTCA 57.475 40.909 0.00 0.00 46.43 3.02
113 114 4.314522 TGCCTATGGACAAATCCTTCAA 57.685 40.909 0.00 0.00 46.43 2.69
114 115 4.671831 TGCCTATGGACAAATCCTTCAAA 58.328 39.130 0.00 0.00 46.43 2.69
115 116 5.271598 TGCCTATGGACAAATCCTTCAAAT 58.728 37.500 0.00 0.00 46.43 2.32
116 117 6.430864 TGCCTATGGACAAATCCTTCAAATA 58.569 36.000 0.00 0.00 46.43 1.40
117 118 7.068702 TGCCTATGGACAAATCCTTCAAATAT 58.931 34.615 0.00 0.00 46.43 1.28
118 119 8.224025 TGCCTATGGACAAATCCTTCAAATATA 58.776 33.333 0.00 0.00 46.43 0.86
119 120 9.077885 GCCTATGGACAAATCCTTCAAATATAA 57.922 33.333 0.00 0.00 46.43 0.98
123 124 9.699410 ATGGACAAATCCTTCAAATATAACTCA 57.301 29.630 0.00 0.00 46.43 3.41
124 125 9.527157 TGGACAAATCCTTCAAATATAACTCAA 57.473 29.630 0.00 0.00 46.43 3.02
127 128 8.470002 ACAAATCCTTCAAATATAACTCAAGGC 58.530 33.333 0.00 0.00 32.00 4.35
128 129 8.469200 CAAATCCTTCAAATATAACTCAAGGCA 58.531 33.333 0.00 0.00 32.00 4.75
129 130 8.593945 AATCCTTCAAATATAACTCAAGGCAA 57.406 30.769 0.00 0.00 32.00 4.52
130 131 7.391148 TCCTTCAAATATAACTCAAGGCAAC 57.609 36.000 0.00 0.00 32.00 4.17
131 132 6.377146 TCCTTCAAATATAACTCAAGGCAACC 59.623 38.462 0.00 0.00 32.00 3.77
132 133 6.152661 CCTTCAAATATAACTCAAGGCAACCA 59.847 38.462 0.00 0.00 37.17 3.67
133 134 7.147846 CCTTCAAATATAACTCAAGGCAACCAT 60.148 37.037 0.00 0.00 37.17 3.55
134 135 7.716799 TCAAATATAACTCAAGGCAACCATT 57.283 32.000 0.00 0.00 37.17 3.16
135 136 8.815565 TCAAATATAACTCAAGGCAACCATTA 57.184 30.769 0.00 0.00 37.17 1.90
136 137 8.902806 TCAAATATAACTCAAGGCAACCATTAG 58.097 33.333 0.00 0.00 37.17 1.73
137 138 8.686334 CAAATATAACTCAAGGCAACCATTAGT 58.314 33.333 0.00 0.00 37.17 2.24
138 139 8.451908 AATATAACTCAAGGCAACCATTAGTC 57.548 34.615 0.00 0.00 37.17 2.59
139 140 3.073274 ACTCAAGGCAACCATTAGTCC 57.927 47.619 0.00 0.00 37.17 3.85
140 141 2.375174 ACTCAAGGCAACCATTAGTCCA 59.625 45.455 0.00 0.00 37.17 4.02
141 142 3.010584 ACTCAAGGCAACCATTAGTCCAT 59.989 43.478 0.00 0.00 37.17 3.41
142 143 4.227300 ACTCAAGGCAACCATTAGTCCATA 59.773 41.667 0.00 0.00 37.17 2.74
143 144 4.780815 TCAAGGCAACCATTAGTCCATAG 58.219 43.478 0.00 0.00 37.17 2.23
144 145 4.473196 TCAAGGCAACCATTAGTCCATAGA 59.527 41.667 0.00 0.00 37.17 1.98
145 146 4.696479 AGGCAACCATTAGTCCATAGAG 57.304 45.455 0.00 0.00 37.17 2.43
146 147 4.298626 AGGCAACCATTAGTCCATAGAGA 58.701 43.478 0.00 0.00 37.17 3.10
147 148 4.910304 AGGCAACCATTAGTCCATAGAGAT 59.090 41.667 0.00 0.00 37.17 2.75
148 149 5.370880 AGGCAACCATTAGTCCATAGAGATT 59.629 40.000 0.00 0.00 37.17 2.40
149 150 5.471456 GGCAACCATTAGTCCATAGAGATTG 59.529 44.000 0.00 0.00 0.00 2.67
150 151 6.058183 GCAACCATTAGTCCATAGAGATTGT 58.942 40.000 0.00 0.00 0.00 2.71
151 152 6.203723 GCAACCATTAGTCCATAGAGATTGTC 59.796 42.308 0.00 0.00 0.00 3.18
152 153 7.275183 CAACCATTAGTCCATAGAGATTGTCA 58.725 38.462 0.00 0.00 0.00 3.58
153 154 7.623999 ACCATTAGTCCATAGAGATTGTCAT 57.376 36.000 0.00 0.00 0.00 3.06
154 155 7.675062 ACCATTAGTCCATAGAGATTGTCATC 58.325 38.462 0.00 0.00 0.00 2.92
155 156 7.290948 ACCATTAGTCCATAGAGATTGTCATCA 59.709 37.037 0.00 0.00 0.00 3.07
156 157 8.152898 CCATTAGTCCATAGAGATTGTCATCAA 58.847 37.037 0.00 0.00 37.98 2.57
157 158 9.722184 CATTAGTCCATAGAGATTGTCATCAAT 57.278 33.333 0.00 0.00 45.57 2.57
161 162 8.153550 AGTCCATAGAGATTGTCATCAATTACC 58.846 37.037 0.00 0.00 43.33 2.85
162 163 7.933577 GTCCATAGAGATTGTCATCAATTACCA 59.066 37.037 0.00 0.00 43.33 3.25
163 164 8.493607 TCCATAGAGATTGTCATCAATTACCAA 58.506 33.333 0.00 0.00 43.33 3.67
164 165 9.123902 CCATAGAGATTGTCATCAATTACCAAA 57.876 33.333 0.00 0.00 43.33 3.28
167 168 7.830739 AGAGATTGTCATCAATTACCAAAACC 58.169 34.615 0.00 0.00 43.33 3.27
168 169 7.451255 AGAGATTGTCATCAATTACCAAAACCA 59.549 33.333 0.00 0.00 43.33 3.67
169 170 7.961351 AGATTGTCATCAATTACCAAAACCAA 58.039 30.769 0.00 0.00 43.33 3.67
170 171 8.428063 AGATTGTCATCAATTACCAAAACCAAA 58.572 29.630 0.00 0.00 43.33 3.28
171 172 7.778470 TTGTCATCAATTACCAAAACCAAAC 57.222 32.000 0.00 0.00 0.00 2.93
172 173 6.878317 TGTCATCAATTACCAAAACCAAACA 58.122 32.000 0.00 0.00 0.00 2.83
173 174 7.504403 TGTCATCAATTACCAAAACCAAACAT 58.496 30.769 0.00 0.00 0.00 2.71
174 175 7.440556 TGTCATCAATTACCAAAACCAAACATG 59.559 33.333 0.00 0.00 0.00 3.21
175 176 6.933521 TCATCAATTACCAAAACCAAACATGG 59.066 34.615 0.00 0.00 38.91 3.66
176 177 5.615289 TCAATTACCAAAACCAAACATGGG 58.385 37.500 0.00 0.00 37.26 4.00
177 178 4.632327 ATTACCAAAACCAAACATGGGG 57.368 40.909 0.00 0.00 37.26 4.96
178 179 1.135960 ACCAAAACCAAACATGGGGG 58.864 50.000 0.00 0.00 37.26 5.40
179 180 0.250684 CCAAAACCAAACATGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
180 181 0.471617 CAAAACCAAACATGGGGGCA 59.528 50.000 0.00 0.00 0.00 5.36
181 182 1.073603 CAAAACCAAACATGGGGGCAT 59.926 47.619 0.00 0.00 0.00 4.40
182 183 0.983467 AAACCAAACATGGGGGCATC 59.017 50.000 0.00 0.00 0.00 3.91
183 184 1.257055 AACCAAACATGGGGGCATCG 61.257 55.000 0.00 0.00 0.00 3.84
184 185 2.495866 CAAACATGGGGGCATCGC 59.504 61.111 0.00 0.00 0.00 4.58
185 186 2.037049 AAACATGGGGGCATCGCA 59.963 55.556 0.00 0.00 42.62 5.10
189 190 2.279743 ATGGGGGCATCGCATGTT 59.720 55.556 7.79 0.00 45.64 2.71
190 191 1.829533 ATGGGGGCATCGCATGTTC 60.830 57.895 7.79 0.00 45.64 3.18
191 192 2.124151 GGGGGCATCGCATGTTCT 60.124 61.111 0.00 0.00 0.00 3.01
192 193 1.754234 GGGGGCATCGCATGTTCTT 60.754 57.895 0.00 0.00 0.00 2.52
193 194 1.322538 GGGGGCATCGCATGTTCTTT 61.323 55.000 0.00 0.00 0.00 2.52
194 195 0.101219 GGGGCATCGCATGTTCTTTC 59.899 55.000 0.00 0.00 0.00 2.62
195 196 0.810648 GGGCATCGCATGTTCTTTCA 59.189 50.000 0.00 0.00 0.00 2.69
196 197 1.202222 GGGCATCGCATGTTCTTTCAG 60.202 52.381 0.00 0.00 0.00 3.02
197 198 1.739466 GGCATCGCATGTTCTTTCAGA 59.261 47.619 0.00 0.00 0.00 3.27
198 199 2.223203 GGCATCGCATGTTCTTTCAGAG 60.223 50.000 0.00 0.00 0.00 3.35
199 200 2.223203 GCATCGCATGTTCTTTCAGAGG 60.223 50.000 0.00 0.00 0.00 3.69
200 201 3.264947 CATCGCATGTTCTTTCAGAGGA 58.735 45.455 0.00 0.00 0.00 3.71
201 202 2.964740 TCGCATGTTCTTTCAGAGGAG 58.035 47.619 0.00 0.00 0.00 3.69
202 203 1.396301 CGCATGTTCTTTCAGAGGAGC 59.604 52.381 0.00 0.00 0.00 4.70
203 204 2.430465 GCATGTTCTTTCAGAGGAGCA 58.570 47.619 0.00 0.00 0.00 4.26
204 205 3.015327 GCATGTTCTTTCAGAGGAGCAT 58.985 45.455 0.00 0.00 34.60 3.79
228 229 3.452264 TGAGAAGATGATTCCACCGTCAT 59.548 43.478 0.00 0.00 37.76 3.06
229 230 4.080919 TGAGAAGATGATTCCACCGTCATT 60.081 41.667 0.00 0.00 35.33 2.57
232 233 4.428294 AGATGATTCCACCGTCATTGAT 57.572 40.909 0.00 0.00 35.33 2.57
279 280 0.557907 AGGGTAGGAAGGAGGAGGGA 60.558 60.000 0.00 0.00 0.00 4.20
280 281 0.398806 GGGTAGGAAGGAGGAGGGAC 60.399 65.000 0.00 0.00 0.00 4.46
287 288 3.462678 GGAGGAGGGACTGGCGAC 61.463 72.222 0.00 0.00 41.55 5.19
289 290 4.316823 AGGAGGGACTGGCGACCA 62.317 66.667 0.00 0.00 41.55 4.02
295 296 2.509336 GACTGGCGACCATGACGG 60.509 66.667 12.49 0.00 42.50 4.79
320 321 3.249080 CGGGCAATGTACGGGTAATTAAG 59.751 47.826 0.00 0.00 0.00 1.85
325 326 5.587443 GCAATGTACGGGTAATTAAGGAGTT 59.413 40.000 0.00 0.00 0.00 3.01
333 334 8.266363 ACGGGTAATTAAGGAGTTGGATTATA 57.734 34.615 0.00 0.00 0.00 0.98
366 374 1.809207 CCGATTGGTTCCATGTGGC 59.191 57.895 0.00 0.00 34.44 5.01
374 382 1.965930 TTCCATGTGGCTCACGTGC 60.966 57.895 11.67 0.00 46.41 5.34
398 406 0.480690 ATGCCACCAACCCTAACACA 59.519 50.000 0.00 0.00 0.00 3.72
418 426 2.250939 TCGTTGCCAGTTTGCTCCG 61.251 57.895 0.00 0.00 0.00 4.63
419 427 2.644992 GTTGCCAGTTTGCTCCGG 59.355 61.111 0.00 0.00 0.00 5.14
501 514 2.685380 AACAGAGAGCCTCCCCCG 60.685 66.667 0.00 0.00 0.00 5.73
647 662 0.589223 CTAGATCTCTCCGACGTGCC 59.411 60.000 0.00 0.00 0.00 5.01
745 768 1.252904 TACTTGAGGTCCCGGTTCCG 61.253 60.000 0.00 4.08 0.00 4.30
769 799 6.346598 CGTCTTTCTGAAAGCGTTCTTTATCA 60.347 38.462 25.03 7.05 42.24 2.15
801 831 2.031944 GGCGGTCTGTTCTTTCTGAAAC 60.032 50.000 0.00 0.00 36.30 2.78
808 838 4.014847 TGTTCTTTCTGAAACAACTGCG 57.985 40.909 17.93 1.17 36.30 5.18
846 876 3.055963 TCATTGCTATTGTTTTGGGCTGG 60.056 43.478 0.00 0.00 0.00 4.85
910 940 7.244166 CAAGAATTGCTCGTCTCAATAAGAT 57.756 36.000 0.00 0.00 40.39 2.40
1025 1055 1.656652 GCGGCTACATCTCACAATGT 58.343 50.000 0.00 0.00 42.41 2.71
1036 1066 6.104665 ACATCTCACAATGTCATAGTGTCTG 58.895 40.000 0.00 0.00 34.97 3.51
1098 1128 1.154150 GAGAACAGCCAATGTGCGC 60.154 57.895 0.00 0.00 43.06 6.09
1123 1153 2.057137 TTCAGTTGGAAGTTGCTGCT 57.943 45.000 0.00 0.00 0.00 4.24
1155 1185 1.101049 AGTTGGGTCTGGTTTGTGCG 61.101 55.000 0.00 0.00 0.00 5.34
1322 1352 5.573337 AGCTGTTATCCTTTTCTGAATGC 57.427 39.130 0.00 0.00 0.00 3.56
1570 1650 5.891451 AGGTTGTCTTGTCTTTGCTTTAAC 58.109 37.500 0.00 0.00 0.00 2.01
1581 1661 2.666836 TGCTTTAACAAACGCGGTAC 57.333 45.000 12.47 0.00 0.00 3.34
1725 1805 3.515602 AAAGAGCAGTCCATTCCTGTT 57.484 42.857 0.00 0.00 32.41 3.16
1750 1830 2.694628 ACAGCTTGGCAACTGAATGAAA 59.305 40.909 25.85 0.00 37.35 2.69
1777 1877 5.850614 TGTAAGAGTTTGTCTCCTGTTACC 58.149 41.667 0.00 0.00 43.71 2.85
1781 1881 4.593206 AGAGTTTGTCTCCTGTTACCATGA 59.407 41.667 0.00 0.00 43.71 3.07
1789 1889 5.525378 GTCTCCTGTTACCATGATTTAGCTG 59.475 44.000 0.00 0.00 0.00 4.24
1980 2173 1.068434 GGTGAGAGCCTAGAGATGTGC 59.932 57.143 0.00 0.00 0.00 4.57
2060 2253 5.163824 ACGAATTGTGCATATTCACTGTCTG 60.164 40.000 18.73 7.86 37.81 3.51
2063 2256 3.253230 TGTGCATATTCACTGTCTGTCG 58.747 45.455 7.03 0.00 37.81 4.35
2071 2264 4.371855 TTCACTGTCTGTCGGATGATAC 57.628 45.455 0.00 0.00 0.00 2.24
2080 2273 2.292569 TGTCGGATGATACGAGCCTTAC 59.707 50.000 0.00 0.00 41.50 2.34
2083 2276 2.678324 GGATGATACGAGCCTTACAGC 58.322 52.381 0.00 0.00 0.00 4.40
2192 2387 8.954834 ATTGCCCAACCTGATATCAAATATTA 57.045 30.769 6.90 0.00 0.00 0.98
2296 2495 2.304761 TGTCTGATAGGTTGTTCCCCAC 59.695 50.000 0.00 0.00 36.75 4.61
2391 2590 1.056660 TTGACTTCCCAGGAGGTGAC 58.943 55.000 6.14 0.00 34.53 3.67
2637 3251 1.486310 TCTCCATTTCACATCCCTCGG 59.514 52.381 0.00 0.00 0.00 4.63
2640 3254 2.841266 TCCATTTCACATCCCTCGGTAA 59.159 45.455 0.00 0.00 0.00 2.85
2649 3263 5.536916 TCACATCCCTCGGTAAAACAATTTT 59.463 36.000 0.00 0.00 36.67 1.82
2654 3268 8.466798 CATCCCTCGGTAAAACAATTTTTATCT 58.533 33.333 0.00 0.00 38.99 1.98
2655 3269 7.822658 TCCCTCGGTAAAACAATTTTTATCTG 58.177 34.615 0.00 0.00 38.99 2.90
2695 3309 3.778265 ACTGATTGGCACCAATAAAGGT 58.222 40.909 14.77 8.54 45.50 3.50
2733 3347 5.371526 GTGGCTGGATCTGAATAATCTCAA 58.628 41.667 0.00 0.00 0.00 3.02
2832 3454 9.523730 GATTGACGGCATTGTTTATTTTAAAAC 57.476 29.630 1.97 0.00 39.35 2.43
2835 3457 7.859377 TGACGGCATTGTTTATTTTAAAACGTA 59.141 29.630 1.97 0.00 41.33 3.57
2836 3458 8.571461 ACGGCATTGTTTATTTTAAAACGTAA 57.429 26.923 1.97 0.00 41.33 3.18
2928 3606 1.071542 TCCATTCCTCTGCGTGAACAA 59.928 47.619 0.00 0.00 0.00 2.83
2929 3607 1.197721 CCATTCCTCTGCGTGAACAAC 59.802 52.381 0.00 0.00 0.00 3.32
2933 3611 0.868406 CCTCTGCGTGAACAACTTCC 59.132 55.000 0.00 0.00 0.00 3.46
2935 3613 1.528586 CTCTGCGTGAACAACTTCCAG 59.471 52.381 0.00 0.00 0.00 3.86
3094 3848 6.863126 CCACTGTTTAATGTTTAAGGCTTCTG 59.137 38.462 1.30 0.00 0.00 3.02
3139 3893 8.846211 AGCTTTGTAGTGTTTTTATATGTGTGT 58.154 29.630 0.00 0.00 0.00 3.72
3149 3903 9.729023 TGTTTTTATATGTGTGTTTTGAGACTG 57.271 29.630 0.00 0.00 0.00 3.51
3188 3942 1.900245 TGGCTACGTACAGAGACACA 58.100 50.000 0.00 0.00 0.00 3.72
3203 3957 6.127591 ACAGAGACACACTTGATAGTATGGTC 60.128 42.308 0.00 0.00 32.99 4.02
3208 3962 5.111989 CACACTTGATAGTATGGTCCAGTG 58.888 45.833 0.00 0.00 41.38 3.66
3257 4011 5.412594 TGATGTTTGACTGCCAAAGAGTATC 59.587 40.000 0.00 0.00 44.64 2.24
3321 4075 9.569122 GGTGTATTTTCAGGCCTTATAGATTTA 57.431 33.333 0.00 0.00 0.00 1.40
3325 4079 5.881923 TTCAGGCCTTATAGATTTACCGT 57.118 39.130 0.00 0.00 0.00 4.83
3428 4186 4.436079 ACTAGGAGCTAGAAGGGGAAAAA 58.564 43.478 0.00 0.00 37.49 1.94
3429 4187 5.040330 ACTAGGAGCTAGAAGGGGAAAAAT 58.960 41.667 0.00 0.00 37.49 1.82
3430 4188 4.511786 AGGAGCTAGAAGGGGAAAAATC 57.488 45.455 0.00 0.00 0.00 2.17
3431 4189 3.852578 AGGAGCTAGAAGGGGAAAAATCA 59.147 43.478 0.00 0.00 0.00 2.57
3432 4190 3.948473 GGAGCTAGAAGGGGAAAAATCAC 59.052 47.826 0.00 0.00 0.00 3.06
3433 4191 4.567747 GGAGCTAGAAGGGGAAAAATCACA 60.568 45.833 0.00 0.00 0.00 3.58
3434 4192 4.998051 AGCTAGAAGGGGAAAAATCACAA 58.002 39.130 0.00 0.00 0.00 3.33
3435 4193 5.583932 AGCTAGAAGGGGAAAAATCACAAT 58.416 37.500 0.00 0.00 0.00 2.71
3436 4194 5.654209 AGCTAGAAGGGGAAAAATCACAATC 59.346 40.000 0.00 0.00 0.00 2.67
3437 4195 5.654209 GCTAGAAGGGGAAAAATCACAATCT 59.346 40.000 0.00 0.00 0.00 2.40
3438 4196 5.990120 AGAAGGGGAAAAATCACAATCTG 57.010 39.130 0.00 0.00 0.00 2.90
3439 4197 4.774200 AGAAGGGGAAAAATCACAATCTGG 59.226 41.667 0.00 0.00 0.00 3.86
3440 4198 4.402616 AGGGGAAAAATCACAATCTGGA 57.597 40.909 0.00 0.00 0.00 3.86
3441 4199 4.750941 AGGGGAAAAATCACAATCTGGAA 58.249 39.130 0.00 0.00 0.00 3.53
3442 4200 5.154418 AGGGGAAAAATCACAATCTGGAAA 58.846 37.500 0.00 0.00 0.00 3.13
3443 4201 5.246883 AGGGGAAAAATCACAATCTGGAAAG 59.753 40.000 0.00 0.00 0.00 2.62
3444 4202 5.012046 GGGGAAAAATCACAATCTGGAAAGT 59.988 40.000 0.00 0.00 0.00 2.66
3445 4203 6.464322 GGGGAAAAATCACAATCTGGAAAGTT 60.464 38.462 0.00 0.00 0.00 2.66
3446 4204 6.992123 GGGAAAAATCACAATCTGGAAAGTTT 59.008 34.615 0.00 0.00 0.00 2.66
3447 4205 7.171508 GGGAAAAATCACAATCTGGAAAGTTTC 59.828 37.037 7.09 7.09 0.00 2.78
3448 4206 7.928167 GGAAAAATCACAATCTGGAAAGTTTCT 59.072 33.333 15.05 0.00 0.00 2.52
3449 4207 9.317936 GAAAAATCACAATCTGGAAAGTTTCTT 57.682 29.630 15.05 0.00 0.00 2.52
3450 4208 8.877808 AAAATCACAATCTGGAAAGTTTCTTC 57.122 30.769 15.05 0.56 0.00 2.87
3451 4209 6.581171 ATCACAATCTGGAAAGTTTCTTCC 57.419 37.500 15.05 0.27 44.54 3.46
3452 4210 4.827284 TCACAATCTGGAAAGTTTCTTCCC 59.173 41.667 15.05 0.00 43.78 3.97
3453 4211 4.584325 CACAATCTGGAAAGTTTCTTCCCA 59.416 41.667 15.05 4.73 43.78 4.37
3454 4212 4.829492 ACAATCTGGAAAGTTTCTTCCCAG 59.171 41.667 15.05 13.75 43.78 4.45
3455 4213 5.072741 CAATCTGGAAAGTTTCTTCCCAGA 58.927 41.667 20.25 20.25 43.78 3.86
3456 4214 4.788925 TCTGGAAAGTTTCTTCCCAGAA 57.211 40.909 17.23 5.63 43.78 3.02
3457 4215 4.718961 TCTGGAAAGTTTCTTCCCAGAAG 58.281 43.478 17.23 0.00 43.78 2.85
3458 4216 3.222603 TGGAAAGTTTCTTCCCAGAAGC 58.777 45.455 15.05 0.00 43.78 3.86
3459 4217 3.222603 GGAAAGTTTCTTCCCAGAAGCA 58.777 45.455 15.05 0.00 41.53 3.91
3460 4218 3.004839 GGAAAGTTTCTTCCCAGAAGCAC 59.995 47.826 15.05 0.06 41.53 4.40
3461 4219 3.584733 AAGTTTCTTCCCAGAAGCACT 57.415 42.857 0.00 2.18 41.53 4.40
3462 4220 3.584733 AGTTTCTTCCCAGAAGCACTT 57.415 42.857 0.00 0.00 41.53 3.16
3463 4221 3.903467 AGTTTCTTCCCAGAAGCACTTT 58.097 40.909 0.00 0.00 41.53 2.66
3464 4222 4.281657 AGTTTCTTCCCAGAAGCACTTTT 58.718 39.130 0.00 0.00 41.53 2.27
3465 4223 4.711846 AGTTTCTTCCCAGAAGCACTTTTT 59.288 37.500 0.00 0.00 41.53 1.94
3485 4243 5.952347 TTTTTACTAGGAGCTAGAAGGGG 57.048 43.478 0.00 0.00 37.49 4.79
3486 4244 4.894252 TTTACTAGGAGCTAGAAGGGGA 57.106 45.455 0.00 0.00 37.49 4.81
3487 4245 4.894252 TTACTAGGAGCTAGAAGGGGAA 57.106 45.455 0.00 0.00 37.49 3.97
3488 4246 3.778622 ACTAGGAGCTAGAAGGGGAAA 57.221 47.619 0.00 0.00 37.49 3.13
3489 4247 4.076175 ACTAGGAGCTAGAAGGGGAAAA 57.924 45.455 0.00 0.00 37.49 2.29
3490 4248 4.436079 ACTAGGAGCTAGAAGGGGAAAAA 58.564 43.478 0.00 0.00 37.49 1.94
3521 4279 5.820947 TCTGGAAACTTTCTTCTGTAACACC 59.179 40.000 1.57 0.00 0.00 4.16
3581 4340 9.734984 ATAAGCCCCTATGTTGTATATGTAAAC 57.265 33.333 0.00 0.00 0.00 2.01
3662 4421 0.179034 GACTCATGGATGGCCCTCAC 60.179 60.000 10.44 0.36 35.38 3.51
3674 4433 1.000896 CCCTCACCACCATGGGAAC 60.001 63.158 18.09 0.00 43.37 3.62
3675 4434 1.377202 CCTCACCACCATGGGAACG 60.377 63.158 18.09 1.66 43.37 3.95
3676 4435 2.033448 TCACCACCATGGGAACGC 59.967 61.111 18.09 0.00 43.37 4.84
3677 4436 3.061848 CACCACCATGGGAACGCC 61.062 66.667 18.09 0.00 43.37 5.68
3678 4437 3.575247 ACCACCATGGGAACGCCA 61.575 61.111 18.09 0.00 43.37 5.69
3679 4438 3.061848 CCACCATGGGAACGCCAC 61.062 66.667 18.09 0.00 32.67 5.01
3680 4439 3.430862 CACCATGGGAACGCCACG 61.431 66.667 18.09 0.00 35.15 4.94
3683 4442 1.813753 CCATGGGAACGCCACGTAG 60.814 63.158 2.85 0.00 39.99 3.51
3685 4444 0.672401 CATGGGAACGCCACGTAGTT 60.672 55.000 3.38 3.38 41.61 2.24
3692 4451 2.345991 GCCACGTAGTTGCTGGGA 59.654 61.111 0.00 0.00 46.33 4.37
3693 4452 1.302192 GCCACGTAGTTGCTGGGAA 60.302 57.895 0.00 0.00 46.33 3.97
3694 4453 1.574702 GCCACGTAGTTGCTGGGAAC 61.575 60.000 0.00 0.00 46.33 3.62
3699 4458 1.536907 TAGTTGCTGGGAACGGGGA 60.537 57.895 0.00 0.00 37.13 4.81
3700 4459 1.128809 TAGTTGCTGGGAACGGGGAA 61.129 55.000 0.00 0.00 37.13 3.97
3701 4460 2.114411 TTGCTGGGAACGGGGAAC 59.886 61.111 0.00 0.00 37.13 3.62
3702 4461 2.758207 TTGCTGGGAACGGGGAACA 61.758 57.895 0.00 0.00 37.13 3.18
3703 4462 2.359975 GCTGGGAACGGGGAACAG 60.360 66.667 0.00 0.00 37.13 3.16
3704 4463 3.157680 CTGGGAACGGGGAACAGT 58.842 61.111 0.00 0.00 41.96 3.55
3705 4464 1.302511 CTGGGAACGGGGAACAGTG 60.303 63.158 0.00 0.00 39.29 3.66
3706 4465 2.671963 GGGAACGGGGAACAGTGC 60.672 66.667 0.00 0.00 39.29 4.40
3708 4467 2.112297 GAACGGGGAACAGTGCCA 59.888 61.111 0.00 0.00 39.29 4.92
3709 4468 2.203294 AACGGGGAACAGTGCCAC 60.203 61.111 0.00 0.00 39.29 5.01
3711 4470 4.619227 CGGGGAACAGTGCCACGT 62.619 66.667 15.06 0.00 46.85 4.49
3712 4471 2.668550 GGGGAACAGTGCCACGTC 60.669 66.667 0.00 0.00 36.84 4.34
3713 4472 2.668550 GGGAACAGTGCCACGTCC 60.669 66.667 0.00 6.69 34.72 4.79
3714 4473 2.668550 GGAACAGTGCCACGTCCC 60.669 66.667 0.00 0.00 0.00 4.46
3715 4474 2.668550 GAACAGTGCCACGTCCCC 60.669 66.667 0.00 0.00 0.00 4.81
3716 4475 3.168528 AACAGTGCCACGTCCCCT 61.169 61.111 0.00 0.00 0.00 4.79
3717 4476 3.476031 AACAGTGCCACGTCCCCTG 62.476 63.158 0.00 0.00 0.00 4.45
3718 4477 3.941188 CAGTGCCACGTCCCCTGT 61.941 66.667 0.00 0.00 0.00 4.00
3719 4478 2.203728 AGTGCCACGTCCCCTGTA 60.204 61.111 0.00 0.00 0.00 2.74
3720 4479 2.047560 GTGCCACGTCCCCTGTAC 60.048 66.667 0.00 0.00 0.00 2.90
3721 4480 3.315949 TGCCACGTCCCCTGTACC 61.316 66.667 0.00 0.00 0.00 3.34
3722 4481 4.446413 GCCACGTCCCCTGTACCG 62.446 72.222 0.00 0.00 0.00 4.02
3723 4482 3.766691 CCACGTCCCCTGTACCGG 61.767 72.222 0.00 0.00 0.00 5.28
3724 4483 3.766691 CACGTCCCCTGTACCGGG 61.767 72.222 15.24 15.24 44.27 5.73
3731 4490 4.827481 CCTGTACCGGGAACATCG 57.173 61.111 6.32 0.00 29.82 3.84
3732 4491 2.195389 CCTGTACCGGGAACATCGA 58.805 57.895 6.32 0.00 29.82 3.59
3733 4492 0.179119 CCTGTACCGGGAACATCGAC 60.179 60.000 6.32 0.00 29.82 4.20
3734 4493 0.179119 CTGTACCGGGAACATCGACC 60.179 60.000 6.32 0.00 0.00 4.79
3735 4494 1.142531 GTACCGGGAACATCGACCC 59.857 63.158 6.32 0.00 42.43 4.46
3739 4498 3.227250 GGGAACATCGACCCGGAT 58.773 61.111 0.73 0.00 36.56 4.18
3740 4499 1.069258 GGGAACATCGACCCGGATC 59.931 63.158 0.73 0.00 36.56 3.36
3741 4500 1.299926 GGAACATCGACCCGGATCG 60.300 63.158 13.60 13.60 43.63 3.69
3753 4512 3.225061 GGATCGAGGGTCGGGGTC 61.225 72.222 0.00 0.00 40.88 4.46
3754 4513 3.593794 GATCGAGGGTCGGGGTCG 61.594 72.222 0.00 0.00 40.88 4.79
3755 4514 4.119363 ATCGAGGGTCGGGGTCGA 62.119 66.667 0.00 0.00 46.03 4.20
3763 4522 4.289101 TCGGGGTCGACACAGGGA 62.289 66.667 21.40 10.72 40.88 4.20
3764 4523 3.307906 CGGGGTCGACACAGGGAA 61.308 66.667 21.40 0.00 39.00 3.97
3765 4524 2.346365 GGGGTCGACACAGGGAAC 59.654 66.667 21.40 0.00 0.00 3.62
3766 4525 2.048503 GGGTCGACACAGGGAACG 60.049 66.667 18.91 0.00 0.00 3.95
3767 4526 2.732658 GGTCGACACAGGGAACGT 59.267 61.111 18.91 0.00 0.00 3.99
3768 4527 1.372623 GGTCGACACAGGGAACGTC 60.373 63.158 18.91 0.00 0.00 4.34
3770 4529 3.103911 CGACACAGGGAACGTCGC 61.104 66.667 0.00 0.00 44.99 5.19
3771 4530 3.103911 GACACAGGGAACGTCGCG 61.104 66.667 0.00 0.00 34.19 5.87
3772 4531 4.657824 ACACAGGGAACGTCGCGG 62.658 66.667 6.13 0.00 34.19 6.46
3773 4532 4.351938 CACAGGGAACGTCGCGGA 62.352 66.667 6.13 0.00 34.19 5.54
3774 4533 4.052229 ACAGGGAACGTCGCGGAG 62.052 66.667 6.13 2.73 34.19 4.63
3775 4534 4.796231 CAGGGAACGTCGCGGAGG 62.796 72.222 6.13 1.19 34.19 4.30
3777 4536 4.790861 GGGAACGTCGCGGAGGAC 62.791 72.222 6.13 0.00 0.00 3.85
3778 4537 4.047059 GGAACGTCGCGGAGGACA 62.047 66.667 6.13 0.00 36.73 4.02
3779 4538 2.804090 GAACGTCGCGGAGGACAC 60.804 66.667 6.13 0.00 36.73 3.67
3780 4539 4.353437 AACGTCGCGGAGGACACC 62.353 66.667 6.13 0.00 36.73 4.16
3794 4553 1.143073 GGACACCTCCCATATCCCAAC 59.857 57.143 0.00 0.00 0.00 3.77
3795 4554 2.127708 GACACCTCCCATATCCCAACT 58.872 52.381 0.00 0.00 0.00 3.16
3796 4555 2.104963 GACACCTCCCATATCCCAACTC 59.895 54.545 0.00 0.00 0.00 3.01
3797 4556 1.421646 CACCTCCCATATCCCAACTCC 59.578 57.143 0.00 0.00 0.00 3.85
3805 4564 1.105167 TATCCCAACTCCGCGTCGAT 61.105 55.000 4.92 0.00 0.00 3.59
3806 4565 2.629050 ATCCCAACTCCGCGTCGATG 62.629 60.000 4.92 0.00 0.00 3.84
3807 4566 3.554692 CCAACTCCGCGTCGATGC 61.555 66.667 19.84 19.84 0.00 3.91
3818 4577 2.046411 TCGATGCGGTGCCATTGT 60.046 55.556 0.00 0.00 0.00 2.71
3821 4580 1.139520 GATGCGGTGCCATTGTTCC 59.860 57.895 0.00 0.00 0.00 3.62
3822 4581 1.594194 GATGCGGTGCCATTGTTCCA 61.594 55.000 0.00 0.00 0.00 3.53
3848 4607 1.077501 CATCCGTGGCACCCAAGAT 60.078 57.895 12.86 6.67 35.05 2.40
3850 4609 1.852157 ATCCGTGGCACCCAAGATGT 61.852 55.000 12.86 0.00 35.05 3.06
3852 4611 1.580942 CGTGGCACCCAAGATGTTG 59.419 57.895 12.86 0.00 35.05 3.33
3856 4615 1.203038 TGGCACCCAAGATGTTGTCAT 60.203 47.619 1.49 0.00 36.95 3.06
3857 4616 1.203052 GGCACCCAAGATGTTGTCATG 59.797 52.381 1.49 0.00 34.06 3.07
3858 4617 2.161855 GCACCCAAGATGTTGTCATGA 58.838 47.619 1.49 0.00 34.06 3.07
3867 4626 1.375908 GTTGTCATGAGAGGCGCCA 60.376 57.895 31.54 8.23 0.00 5.69
3881 4640 2.273449 GCCACCTGCTACCATGCT 59.727 61.111 0.00 0.00 36.87 3.79
3889 4648 0.749091 TGCTACCATGCTGATGTGGC 60.749 55.000 1.35 1.35 39.13 5.01
3909 4668 1.148273 GTATGCCCCTTCATCGCCA 59.852 57.895 0.00 0.00 0.00 5.69
3913 4672 4.883354 CCCCTTCATCGCCAGGCC 62.883 72.222 5.63 0.00 0.00 5.19
3914 4673 3.801997 CCCTTCATCGCCAGGCCT 61.802 66.667 5.63 0.00 0.00 5.19
3915 4674 2.273449 CCTTCATCGCCAGGCCTT 59.727 61.111 0.00 0.00 0.00 4.35
3916 4675 2.117156 CCTTCATCGCCAGGCCTTG 61.117 63.158 0.00 0.00 0.00 3.61
3917 4676 2.751436 TTCATCGCCAGGCCTTGC 60.751 61.111 18.84 18.84 0.00 4.01
3958 4723 0.685097 GGCTTCACTACCCAGACACA 59.315 55.000 0.00 0.00 0.00 3.72
3959 4724 1.279271 GGCTTCACTACCCAGACACAT 59.721 52.381 0.00 0.00 0.00 3.21
3971 4736 3.085208 GACACATGCCATGTCGGAT 57.915 52.632 7.51 0.00 42.70 4.18
3978 4743 1.040893 TGCCATGTCGGATACCTCGT 61.041 55.000 0.00 0.00 36.56 4.18
4011 4777 3.491208 GAGCATCTCCAGTTGCCAT 57.509 52.632 6.09 0.00 40.59 4.40
4013 4779 1.035932 AGCATCTCCAGTTGCCATGC 61.036 55.000 6.09 0.00 40.59 4.06
4014 4780 2.012902 GCATCTCCAGTTGCCATGCC 62.013 60.000 0.00 0.00 34.91 4.40
4015 4781 1.452651 ATCTCCAGTTGCCATGCCG 60.453 57.895 0.00 0.00 0.00 5.69
4016 4782 1.913951 ATCTCCAGTTGCCATGCCGA 61.914 55.000 0.00 0.00 0.00 5.54
4017 4783 1.452651 CTCCAGTTGCCATGCCGAT 60.453 57.895 0.00 0.00 0.00 4.18
4018 4784 1.721664 CTCCAGTTGCCATGCCGATG 61.722 60.000 0.00 0.00 0.00 3.84
4019 4785 2.103538 CAGTTGCCATGCCGATGC 59.896 61.111 0.00 0.00 38.26 3.91
4061 4827 3.772853 AACTGCGCTCTTGGCACCA 62.773 57.895 9.73 0.00 41.91 4.17
4062 4828 2.749044 CTGCGCTCTTGGCACCAT 60.749 61.111 9.73 0.00 41.91 3.55
4065 4831 2.360350 CGCTCTTGGCACCATGGT 60.360 61.111 13.00 13.00 41.91 3.55
4103 4871 5.446741 GCTTTTGTATTGAGCATTGCCAATG 60.447 40.000 23.90 13.11 41.85 2.82
4114 4882 4.380945 GCCAATGGGAGGTGGGCA 62.381 66.667 0.00 0.00 44.01 5.36
4115 4883 2.043652 CCAATGGGAGGTGGGCAG 60.044 66.667 0.00 0.00 35.59 4.85
4116 4884 2.757099 CAATGGGAGGTGGGCAGC 60.757 66.667 0.00 0.00 0.00 5.25
4119 4887 2.793317 AATGGGAGGTGGGCAGCAAG 62.793 60.000 0.00 0.00 0.00 4.01
4131 4899 2.753043 AGCAAGCCTGGGCATTCG 60.753 61.111 14.39 0.35 44.88 3.34
4148 4916 1.223187 TCGGTCTTTTCGGTTTGCTC 58.777 50.000 0.00 0.00 0.00 4.26
4149 4917 0.237498 CGGTCTTTTCGGTTTGCTCC 59.763 55.000 0.00 0.00 0.00 4.70
4157 4925 2.664436 CGGTTTGCTCCGTTCGGTC 61.664 63.158 11.04 5.43 44.77 4.79
4169 4937 5.080969 TCCGTTCGGTCTATTGATCTTTT 57.919 39.130 11.04 0.00 0.00 2.27
4172 4940 4.026804 CGTTCGGTCTATTGATCTTTTCGG 60.027 45.833 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.583854 CCAAAGATTGGTCATGTGAGAGTAG 59.416 44.000 0.87 0.00 45.93 2.57
1 2 5.491070 CCAAAGATTGGTCATGTGAGAGTA 58.509 41.667 0.87 0.00 45.93 2.59
2 3 4.330250 CCAAAGATTGGTCATGTGAGAGT 58.670 43.478 0.87 0.00 45.93 3.24
3 4 4.959596 CCAAAGATTGGTCATGTGAGAG 57.040 45.455 0.87 0.00 45.93 3.20
23 24 8.762481 ACCAAGGTGTTATTAAGGAATTATCC 57.238 34.615 0.00 0.00 46.98 2.59
24 25 9.403583 TGACCAAGGTGTTATTAAGGAATTATC 57.596 33.333 0.00 0.00 0.00 1.75
25 26 9.185680 GTGACCAAGGTGTTATTAAGGAATTAT 57.814 33.333 0.00 0.00 0.00 1.28
26 27 7.612633 GGTGACCAAGGTGTTATTAAGGAATTA 59.387 37.037 0.00 0.00 0.00 1.40
27 28 6.436218 GGTGACCAAGGTGTTATTAAGGAATT 59.564 38.462 0.00 0.00 0.00 2.17
28 29 5.949952 GGTGACCAAGGTGTTATTAAGGAAT 59.050 40.000 0.00 0.00 0.00 3.01
29 30 5.163077 TGGTGACCAAGGTGTTATTAAGGAA 60.163 40.000 0.00 0.00 0.00 3.36
30 31 4.351407 TGGTGACCAAGGTGTTATTAAGGA 59.649 41.667 0.00 0.00 0.00 3.36
31 32 4.457949 GTGGTGACCAAGGTGTTATTAAGG 59.542 45.833 5.57 0.00 34.18 2.69
32 33 5.067273 TGTGGTGACCAAGGTGTTATTAAG 58.933 41.667 5.57 0.00 34.18 1.85
33 34 5.050126 TGTGGTGACCAAGGTGTTATTAA 57.950 39.130 5.57 0.00 34.18 1.40
34 35 4.708576 TGTGGTGACCAAGGTGTTATTA 57.291 40.909 5.57 0.00 34.18 0.98
35 36 3.586470 TGTGGTGACCAAGGTGTTATT 57.414 42.857 5.57 0.00 34.18 1.40
36 37 3.806949 ATGTGGTGACCAAGGTGTTAT 57.193 42.857 5.57 0.00 34.18 1.89
37 38 4.708576 TTATGTGGTGACCAAGGTGTTA 57.291 40.909 5.57 0.00 34.18 2.41
38 39 3.586470 TTATGTGGTGACCAAGGTGTT 57.414 42.857 5.57 0.00 34.18 3.32
39 40 3.117663 AGTTTATGTGGTGACCAAGGTGT 60.118 43.478 5.57 0.00 34.18 4.16
40 41 3.486383 AGTTTATGTGGTGACCAAGGTG 58.514 45.455 5.57 0.00 34.18 4.00
41 42 3.497942 GGAGTTTATGTGGTGACCAAGGT 60.498 47.826 5.57 0.00 34.18 3.50
42 43 3.081804 GGAGTTTATGTGGTGACCAAGG 58.918 50.000 5.57 0.00 34.18 3.61
43 44 4.021102 AGGAGTTTATGTGGTGACCAAG 57.979 45.455 5.57 0.00 34.18 3.61
44 45 4.141287 CAAGGAGTTTATGTGGTGACCAA 58.859 43.478 5.57 0.00 34.18 3.67
45 46 3.392947 TCAAGGAGTTTATGTGGTGACCA 59.607 43.478 0.00 0.00 0.00 4.02
46 47 4.015872 TCAAGGAGTTTATGTGGTGACC 57.984 45.455 0.00 0.00 0.00 4.02
47 48 5.278315 GGTTTCAAGGAGTTTATGTGGTGAC 60.278 44.000 0.00 0.00 0.00 3.67
48 49 4.825085 GGTTTCAAGGAGTTTATGTGGTGA 59.175 41.667 0.00 0.00 0.00 4.02
49 50 4.582656 TGGTTTCAAGGAGTTTATGTGGTG 59.417 41.667 0.00 0.00 0.00 4.17
50 51 4.798882 TGGTTTCAAGGAGTTTATGTGGT 58.201 39.130 0.00 0.00 0.00 4.16
51 52 5.068460 TGTTGGTTTCAAGGAGTTTATGTGG 59.932 40.000 0.00 0.00 32.92 4.17
52 53 5.977129 GTGTTGGTTTCAAGGAGTTTATGTG 59.023 40.000 0.00 0.00 32.92 3.21
53 54 5.654650 TGTGTTGGTTTCAAGGAGTTTATGT 59.345 36.000 0.00 0.00 32.92 2.29
54 55 6.142818 TGTGTTGGTTTCAAGGAGTTTATG 57.857 37.500 0.00 0.00 32.92 1.90
55 56 6.239289 CCATGTGTTGGTTTCAAGGAGTTTAT 60.239 38.462 0.00 0.00 40.99 1.40
56 57 5.068460 CCATGTGTTGGTTTCAAGGAGTTTA 59.932 40.000 0.00 0.00 40.99 2.01
57 58 4.141959 CCATGTGTTGGTTTCAAGGAGTTT 60.142 41.667 0.00 0.00 40.99 2.66
58 59 3.384467 CCATGTGTTGGTTTCAAGGAGTT 59.616 43.478 0.00 0.00 40.99 3.01
59 60 2.958355 CCATGTGTTGGTTTCAAGGAGT 59.042 45.455 0.00 0.00 40.99 3.85
60 61 3.004734 GTCCATGTGTTGGTTTCAAGGAG 59.995 47.826 0.00 0.00 46.52 3.69
61 62 2.955660 GTCCATGTGTTGGTTTCAAGGA 59.044 45.455 0.00 0.00 46.52 3.36
62 63 2.958355 AGTCCATGTGTTGGTTTCAAGG 59.042 45.455 0.00 0.00 46.52 3.61
63 64 4.097741 TGAAGTCCATGTGTTGGTTTCAAG 59.902 41.667 9.97 0.00 46.52 3.02
64 65 4.019858 TGAAGTCCATGTGTTGGTTTCAA 58.980 39.130 9.97 0.00 46.52 2.69
65 66 3.625853 TGAAGTCCATGTGTTGGTTTCA 58.374 40.909 8.94 8.94 46.52 2.69
66 67 4.338118 TCTTGAAGTCCATGTGTTGGTTTC 59.662 41.667 0.00 0.00 46.52 2.78
67 68 4.277476 TCTTGAAGTCCATGTGTTGGTTT 58.723 39.130 0.00 0.00 46.52 3.27
68 69 3.897239 TCTTGAAGTCCATGTGTTGGTT 58.103 40.909 0.00 0.00 46.52 3.67
69 70 3.576078 TCTTGAAGTCCATGTGTTGGT 57.424 42.857 0.00 0.00 46.52 3.67
71 72 4.682860 GCATTTCTTGAAGTCCATGTGTTG 59.317 41.667 0.00 0.00 0.00 3.33
72 73 4.262164 GGCATTTCTTGAAGTCCATGTGTT 60.262 41.667 0.00 0.00 0.00 3.32
73 74 3.256631 GGCATTTCTTGAAGTCCATGTGT 59.743 43.478 0.00 0.00 0.00 3.72
74 75 3.508793 AGGCATTTCTTGAAGTCCATGTG 59.491 43.478 0.00 0.00 0.00 3.21
75 76 3.771216 AGGCATTTCTTGAAGTCCATGT 58.229 40.909 0.00 0.00 0.00 3.21
76 77 5.221185 CCATAGGCATTTCTTGAAGTCCATG 60.221 44.000 0.00 0.00 0.00 3.66
77 78 4.891756 CCATAGGCATTTCTTGAAGTCCAT 59.108 41.667 0.00 0.00 0.00 3.41
78 79 4.018506 TCCATAGGCATTTCTTGAAGTCCA 60.019 41.667 0.00 0.00 0.00 4.02
79 80 4.336713 GTCCATAGGCATTTCTTGAAGTCC 59.663 45.833 0.00 0.00 0.00 3.85
80 81 4.943705 TGTCCATAGGCATTTCTTGAAGTC 59.056 41.667 0.00 0.00 0.00 3.01
81 82 4.922206 TGTCCATAGGCATTTCTTGAAGT 58.078 39.130 0.00 0.00 0.00 3.01
82 83 5.902613 TTGTCCATAGGCATTTCTTGAAG 57.097 39.130 0.00 0.00 0.00 3.02
83 84 6.127366 GGATTTGTCCATAGGCATTTCTTGAA 60.127 38.462 0.00 0.00 0.00 2.69
84 85 5.360714 GGATTTGTCCATAGGCATTTCTTGA 59.639 40.000 0.00 0.00 0.00 3.02
85 86 5.361857 AGGATTTGTCCATAGGCATTTCTTG 59.638 40.000 0.00 0.00 0.00 3.02
86 87 5.522641 AGGATTTGTCCATAGGCATTTCTT 58.477 37.500 0.00 0.00 0.00 2.52
87 88 5.134725 AGGATTTGTCCATAGGCATTTCT 57.865 39.130 0.00 0.00 0.00 2.52
88 89 5.360714 TGAAGGATTTGTCCATAGGCATTTC 59.639 40.000 0.00 0.00 0.00 2.17
89 90 5.271598 TGAAGGATTTGTCCATAGGCATTT 58.728 37.500 0.00 0.00 0.00 2.32
90 91 4.870636 TGAAGGATTTGTCCATAGGCATT 58.129 39.130 0.00 0.00 0.00 3.56
91 92 4.524802 TGAAGGATTTGTCCATAGGCAT 57.475 40.909 0.00 0.00 0.00 4.40
92 93 4.314522 TTGAAGGATTTGTCCATAGGCA 57.685 40.909 0.00 0.00 0.00 4.75
93 94 5.859205 ATTTGAAGGATTTGTCCATAGGC 57.141 39.130 0.00 0.00 0.00 3.93
97 98 9.699410 TGAGTTATATTTGAAGGATTTGTCCAT 57.301 29.630 0.00 0.00 0.00 3.41
98 99 9.527157 TTGAGTTATATTTGAAGGATTTGTCCA 57.473 29.630 0.00 0.00 0.00 4.02
101 102 8.470002 GCCTTGAGTTATATTTGAAGGATTTGT 58.530 33.333 0.00 0.00 33.17 2.83
102 103 8.469200 TGCCTTGAGTTATATTTGAAGGATTTG 58.531 33.333 0.00 0.00 33.17 2.32
103 104 8.593945 TGCCTTGAGTTATATTTGAAGGATTT 57.406 30.769 0.00 0.00 33.17 2.17
104 105 8.470002 GTTGCCTTGAGTTATATTTGAAGGATT 58.530 33.333 0.00 0.00 33.17 3.01
105 106 7.068716 GGTTGCCTTGAGTTATATTTGAAGGAT 59.931 37.037 0.00 0.00 33.17 3.24
106 107 6.377146 GGTTGCCTTGAGTTATATTTGAAGGA 59.623 38.462 0.00 0.00 33.17 3.36
107 108 6.152661 TGGTTGCCTTGAGTTATATTTGAAGG 59.847 38.462 0.00 0.00 34.30 3.46
108 109 7.156876 TGGTTGCCTTGAGTTATATTTGAAG 57.843 36.000 0.00 0.00 0.00 3.02
109 110 7.716799 ATGGTTGCCTTGAGTTATATTTGAA 57.283 32.000 0.00 0.00 0.00 2.69
110 111 7.716799 AATGGTTGCCTTGAGTTATATTTGA 57.283 32.000 0.00 0.00 0.00 2.69
111 112 8.686334 ACTAATGGTTGCCTTGAGTTATATTTG 58.314 33.333 0.00 0.00 0.00 2.32
112 113 8.823220 ACTAATGGTTGCCTTGAGTTATATTT 57.177 30.769 0.00 0.00 0.00 1.40
113 114 7.502561 GGACTAATGGTTGCCTTGAGTTATATT 59.497 37.037 0.00 0.00 0.00 1.28
114 115 6.998673 GGACTAATGGTTGCCTTGAGTTATAT 59.001 38.462 0.00 0.00 0.00 0.86
115 116 6.069905 TGGACTAATGGTTGCCTTGAGTTATA 60.070 38.462 0.00 0.00 0.00 0.98
116 117 5.193679 GGACTAATGGTTGCCTTGAGTTAT 58.806 41.667 0.00 0.00 0.00 1.89
117 118 4.042311 TGGACTAATGGTTGCCTTGAGTTA 59.958 41.667 0.00 0.00 0.00 2.24
118 119 3.181434 TGGACTAATGGTTGCCTTGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
119 120 2.375174 TGGACTAATGGTTGCCTTGAGT 59.625 45.455 0.00 0.00 0.00 3.41
120 121 3.071874 TGGACTAATGGTTGCCTTGAG 57.928 47.619 0.00 0.00 0.00 3.02
121 122 3.737559 ATGGACTAATGGTTGCCTTGA 57.262 42.857 0.00 0.00 0.00 3.02
122 123 4.780815 TCTATGGACTAATGGTTGCCTTG 58.219 43.478 0.00 0.00 0.00 3.61
123 124 4.721776 TCTCTATGGACTAATGGTTGCCTT 59.278 41.667 0.00 0.00 0.00 4.35
124 125 4.298626 TCTCTATGGACTAATGGTTGCCT 58.701 43.478 0.00 0.00 0.00 4.75
125 126 4.689612 TCTCTATGGACTAATGGTTGCC 57.310 45.455 0.00 0.00 0.00 4.52
126 127 6.058183 ACAATCTCTATGGACTAATGGTTGC 58.942 40.000 0.00 0.00 0.00 4.17
127 128 7.275183 TGACAATCTCTATGGACTAATGGTTG 58.725 38.462 0.00 0.00 0.00 3.77
128 129 7.437713 TGACAATCTCTATGGACTAATGGTT 57.562 36.000 0.00 0.00 0.00 3.67
129 130 7.290948 TGATGACAATCTCTATGGACTAATGGT 59.709 37.037 0.00 0.00 33.61 3.55
130 131 7.674120 TGATGACAATCTCTATGGACTAATGG 58.326 38.462 0.00 0.00 33.61 3.16
131 132 9.722184 ATTGATGACAATCTCTATGGACTAATG 57.278 33.333 0.00 0.00 42.20 1.90
135 136 8.153550 GGTAATTGATGACAATCTCTATGGACT 58.846 37.037 0.00 0.00 44.67 3.85
136 137 7.933577 TGGTAATTGATGACAATCTCTATGGAC 59.066 37.037 0.00 0.00 44.67 4.02
137 138 8.033178 TGGTAATTGATGACAATCTCTATGGA 57.967 34.615 0.00 0.00 44.67 3.41
138 139 8.681486 TTGGTAATTGATGACAATCTCTATGG 57.319 34.615 0.00 0.00 44.67 2.74
141 142 8.956426 GGTTTTGGTAATTGATGACAATCTCTA 58.044 33.333 0.00 0.00 44.67 2.43
142 143 7.451255 TGGTTTTGGTAATTGATGACAATCTCT 59.549 33.333 0.00 0.00 44.67 3.10
143 144 7.601856 TGGTTTTGGTAATTGATGACAATCTC 58.398 34.615 0.00 0.00 44.67 2.75
144 145 7.537596 TGGTTTTGGTAATTGATGACAATCT 57.462 32.000 0.00 0.00 44.67 2.40
145 146 8.495148 GTTTGGTTTTGGTAATTGATGACAATC 58.505 33.333 0.00 0.00 44.67 2.67
146 147 7.989741 TGTTTGGTTTTGGTAATTGATGACAAT 59.010 29.630 0.00 0.00 46.99 2.71
147 148 7.331026 TGTTTGGTTTTGGTAATTGATGACAA 58.669 30.769 0.00 0.00 40.42 3.18
148 149 6.878317 TGTTTGGTTTTGGTAATTGATGACA 58.122 32.000 0.00 0.00 0.00 3.58
149 150 7.095271 CCATGTTTGGTTTTGGTAATTGATGAC 60.095 37.037 0.00 0.00 38.30 3.06
150 151 6.933521 CCATGTTTGGTTTTGGTAATTGATGA 59.066 34.615 0.00 0.00 38.30 2.92
151 152 6.149142 CCCATGTTTGGTTTTGGTAATTGATG 59.851 38.462 0.00 0.00 41.91 3.07
152 153 6.237154 CCCATGTTTGGTTTTGGTAATTGAT 58.763 36.000 0.00 0.00 41.91 2.57
153 154 5.455326 CCCCATGTTTGGTTTTGGTAATTGA 60.455 40.000 0.00 0.00 41.91 2.57
154 155 4.759183 CCCCATGTTTGGTTTTGGTAATTG 59.241 41.667 0.00 0.00 41.91 2.32
155 156 4.202514 CCCCCATGTTTGGTTTTGGTAATT 60.203 41.667 0.00 0.00 41.91 1.40
156 157 3.329225 CCCCCATGTTTGGTTTTGGTAAT 59.671 43.478 0.00 0.00 41.91 1.89
157 158 2.706190 CCCCCATGTTTGGTTTTGGTAA 59.294 45.455 0.00 0.00 41.91 2.85
158 159 2.330216 CCCCCATGTTTGGTTTTGGTA 58.670 47.619 0.00 0.00 41.91 3.25
159 160 1.135960 CCCCCATGTTTGGTTTTGGT 58.864 50.000 0.00 0.00 41.91 3.67
160 161 0.250684 GCCCCCATGTTTGGTTTTGG 60.251 55.000 0.00 0.00 41.91 3.28
161 162 0.471617 TGCCCCCATGTTTGGTTTTG 59.528 50.000 0.00 0.00 41.91 2.44
162 163 1.350684 GATGCCCCCATGTTTGGTTTT 59.649 47.619 0.00 0.00 41.91 2.43
163 164 0.983467 GATGCCCCCATGTTTGGTTT 59.017 50.000 0.00 0.00 41.91 3.27
164 165 1.257055 CGATGCCCCCATGTTTGGTT 61.257 55.000 0.00 0.00 41.91 3.67
165 166 1.682005 CGATGCCCCCATGTTTGGT 60.682 57.895 0.00 0.00 41.91 3.67
166 167 3.080045 GCGATGCCCCCATGTTTGG 62.080 63.158 0.00 0.00 43.23 3.28
167 168 1.678598 ATGCGATGCCCCCATGTTTG 61.679 55.000 0.00 0.00 0.00 2.93
168 169 1.381599 ATGCGATGCCCCCATGTTT 60.382 52.632 0.00 0.00 0.00 2.83
169 170 2.129146 CATGCGATGCCCCCATGTT 61.129 57.895 0.00 0.00 33.46 2.71
170 171 2.520020 CATGCGATGCCCCCATGT 60.520 61.111 0.00 0.00 33.46 3.21
171 172 2.079020 GAACATGCGATGCCCCCATG 62.079 60.000 0.00 0.00 41.49 3.66
172 173 1.829533 GAACATGCGATGCCCCCAT 60.830 57.895 0.00 0.00 0.00 4.00
173 174 2.440065 GAACATGCGATGCCCCCA 60.440 61.111 0.00 0.00 0.00 4.96
174 175 1.322538 AAAGAACATGCGATGCCCCC 61.323 55.000 0.00 0.00 0.00 5.40
175 176 0.101219 GAAAGAACATGCGATGCCCC 59.899 55.000 0.00 0.00 0.00 5.80
176 177 0.810648 TGAAAGAACATGCGATGCCC 59.189 50.000 0.00 0.00 0.00 5.36
177 178 1.739466 TCTGAAAGAACATGCGATGCC 59.261 47.619 0.00 0.00 42.31 4.40
178 179 2.223203 CCTCTGAAAGAACATGCGATGC 60.223 50.000 0.00 0.00 46.34 3.91
179 180 3.264947 TCCTCTGAAAGAACATGCGATG 58.735 45.455 0.00 0.00 46.34 3.84
180 181 3.529533 CTCCTCTGAAAGAACATGCGAT 58.470 45.455 0.00 0.00 46.34 4.58
181 182 2.932622 GCTCCTCTGAAAGAACATGCGA 60.933 50.000 0.00 0.00 46.34 5.10
182 183 1.396301 GCTCCTCTGAAAGAACATGCG 59.604 52.381 0.00 0.00 46.34 4.73
183 184 2.430465 TGCTCCTCTGAAAGAACATGC 58.570 47.619 0.00 0.00 46.34 4.06
184 185 6.053650 TCATATGCTCCTCTGAAAGAACATG 58.946 40.000 0.00 0.00 46.34 3.21
185 186 6.099413 TCTCATATGCTCCTCTGAAAGAACAT 59.901 38.462 0.00 0.00 46.34 2.71
186 187 5.423290 TCTCATATGCTCCTCTGAAAGAACA 59.577 40.000 0.00 0.00 46.34 3.18
187 188 5.911752 TCTCATATGCTCCTCTGAAAGAAC 58.088 41.667 0.00 0.00 46.34 3.01
188 189 6.382282 TCTTCTCATATGCTCCTCTGAAAGAA 59.618 38.462 0.00 0.00 46.34 2.52
189 190 5.896106 TCTTCTCATATGCTCCTCTGAAAGA 59.104 40.000 0.00 0.00 43.69 2.52
190 191 6.159299 TCTTCTCATATGCTCCTCTGAAAG 57.841 41.667 0.00 0.00 0.00 2.62
191 192 6.325804 TCATCTTCTCATATGCTCCTCTGAAA 59.674 38.462 0.00 0.00 0.00 2.69
192 193 5.837438 TCATCTTCTCATATGCTCCTCTGAA 59.163 40.000 0.00 0.00 0.00 3.02
193 194 5.392125 TCATCTTCTCATATGCTCCTCTGA 58.608 41.667 0.00 0.00 0.00 3.27
194 195 5.725325 TCATCTTCTCATATGCTCCTCTG 57.275 43.478 0.00 0.00 0.00 3.35
195 196 6.070653 GGAATCATCTTCTCATATGCTCCTCT 60.071 42.308 0.00 0.00 0.00 3.69
196 197 6.108015 GGAATCATCTTCTCATATGCTCCTC 58.892 44.000 0.00 0.00 0.00 3.71
197 198 5.546887 TGGAATCATCTTCTCATATGCTCCT 59.453 40.000 0.00 0.00 31.32 3.69
198 199 5.642919 GTGGAATCATCTTCTCATATGCTCC 59.357 44.000 0.00 0.00 0.00 4.70
199 200 5.642919 GGTGGAATCATCTTCTCATATGCTC 59.357 44.000 0.00 0.00 0.00 4.26
200 201 5.558818 GGTGGAATCATCTTCTCATATGCT 58.441 41.667 0.00 0.00 0.00 3.79
201 202 4.391216 CGGTGGAATCATCTTCTCATATGC 59.609 45.833 0.00 0.00 0.00 3.14
202 203 5.545588 ACGGTGGAATCATCTTCTCATATG 58.454 41.667 0.00 0.00 0.00 1.78
203 204 5.305386 TGACGGTGGAATCATCTTCTCATAT 59.695 40.000 0.00 0.00 0.00 1.78
204 205 4.649218 TGACGGTGGAATCATCTTCTCATA 59.351 41.667 0.00 0.00 0.00 2.15
256 257 0.561680 TCCTCCTTCCTACCCTAGCC 59.438 60.000 0.00 0.00 0.00 3.93
259 260 1.242444 CCCTCCTCCTTCCTACCCTA 58.758 60.000 0.00 0.00 0.00 3.53
279 280 4.760047 GCCGTCATGGTCGCCAGT 62.760 66.667 4.90 0.00 41.21 4.00
297 298 0.816421 ATTACCCGTACATTGCCCGC 60.816 55.000 0.00 0.00 0.00 6.13
298 299 1.670791 AATTACCCGTACATTGCCCG 58.329 50.000 0.00 0.00 0.00 6.13
302 303 6.037830 CCAACTCCTTAATTACCCGTACATTG 59.962 42.308 0.00 0.00 0.00 2.82
366 374 1.867233 GGTGGCATATTAGCACGTGAG 59.133 52.381 22.23 0.00 35.83 3.51
374 382 4.578928 GTGTTAGGGTTGGTGGCATATTAG 59.421 45.833 0.00 0.00 0.00 1.73
398 406 1.166531 GGAGCAAACTGGCAACGACT 61.167 55.000 0.00 0.00 42.51 4.18
418 426 2.039418 GACAATGGGAAAATAGGGGCC 58.961 52.381 0.00 0.00 0.00 5.80
419 427 1.681264 CGACAATGGGAAAATAGGGGC 59.319 52.381 0.00 0.00 0.00 5.80
421 429 1.681264 GGCGACAATGGGAAAATAGGG 59.319 52.381 0.00 0.00 0.00 3.53
501 514 5.096849 GGTTTCTGTCTTCTGTAGATCGAC 58.903 45.833 0.00 0.00 34.79 4.20
647 662 1.375523 CGAAACCAAGTCGAGGGGG 60.376 63.158 3.09 0.00 41.02 5.40
745 768 6.792726 GTGATAAAGAACGCTTTCAGAAAGAC 59.207 38.462 24.70 14.94 43.08 3.01
808 838 2.361737 GAACCCCCTGCTTCAGCC 60.362 66.667 0.00 0.00 41.18 4.85
846 876 5.570589 GCAATAAATCACAGCTCAAACAGTC 59.429 40.000 0.00 0.00 0.00 3.51
905 935 9.412460 AGGATTGTGCAATTCTTGATTATCTTA 57.588 29.630 0.05 0.00 32.85 2.10
910 940 7.067372 CACCTAGGATTGTGCAATTCTTGATTA 59.933 37.037 17.98 0.00 37.74 1.75
934 964 3.001330 GCATCTGTATACCTGTTTCGCAC 59.999 47.826 0.00 0.00 0.00 5.34
942 972 1.341209 TCGGCTGCATCTGTATACCTG 59.659 52.381 0.50 0.00 0.00 4.00
1036 1066 3.061848 CCACCGGTGGGATTGTGC 61.062 66.667 41.16 0.00 46.81 4.57
1057 1087 4.081198 CCTGTCCAATCTAGAGTTCTTGCT 60.081 45.833 0.00 0.00 0.00 3.91
1098 1128 3.131046 AGCAACTTCCAACTGAAACCAAG 59.869 43.478 0.00 0.00 31.06 3.61
1155 1185 2.579738 GAAGACTGGGAGCCCGAC 59.420 66.667 0.29 0.00 39.42 4.79
1322 1352 4.956700 TCAGTATAAGGGAACTCTCACCTG 59.043 45.833 0.00 0.00 42.68 4.00
1570 1650 4.208460 CAGTGGATATAAGTACCGCGTTTG 59.792 45.833 4.92 0.00 38.93 2.93
1581 1661 4.422073 TGCCCAGAACAGTGGATATAAG 57.578 45.455 0.00 0.00 40.44 1.73
1725 1805 5.252547 TCATTCAGTTGCCAAGCTGTTATA 58.747 37.500 0.00 0.00 34.57 0.98
1750 1830 4.841246 ACAGGAGACAAACTCTTACATCCT 59.159 41.667 0.00 0.00 44.37 3.24
1777 1877 3.005472 CCTGATTGGCCAGCTAAATCATG 59.995 47.826 15.70 10.42 39.06 3.07
1781 1881 2.834638 ACCTGATTGGCCAGCTAAAT 57.165 45.000 5.11 0.00 40.22 1.40
1789 1889 1.473258 TGCACATTACCTGATTGGCC 58.527 50.000 0.00 0.00 40.22 5.36
1980 2173 0.946221 AAGAAACGGCTCTGTCTGCG 60.946 55.000 0.00 0.00 0.00 5.18
2060 2253 2.292569 TGTAAGGCTCGTATCATCCGAC 59.707 50.000 0.00 0.00 0.00 4.79
2063 2256 2.035961 TGCTGTAAGGCTCGTATCATCC 59.964 50.000 0.00 0.00 0.00 3.51
2071 2264 3.896648 TTTTTCTTGCTGTAAGGCTCG 57.103 42.857 5.66 0.00 37.01 5.03
2080 2273 7.591057 TCGTGATTCAAGTTATTTTTCTTGCTG 59.409 33.333 0.00 0.00 40.27 4.41
2083 2276 7.591057 TGCTCGTGATTCAAGTTATTTTTCTTG 59.409 33.333 0.00 0.00 41.36 3.02
2192 2387 7.781324 AATCAGTCCAATATTTGTTTGGTCT 57.219 32.000 2.65 0.10 43.41 3.85
2208 2403 8.474006 ACAAAACAAACTACAAAAATCAGTCC 57.526 30.769 0.00 0.00 0.00 3.85
2420 2619 0.171231 GCCAAATCAAACGAGGAGGC 59.829 55.000 0.00 0.00 0.00 4.70
2682 3296 6.072119 GGGCAGTTATATACCTTTATTGGTGC 60.072 42.308 0.00 0.00 41.05 5.01
2733 3347 4.338012 TGTCTGATTGAAATCATGTGGCT 58.662 39.130 6.20 0.00 43.87 4.75
2832 3454 8.742554 ATGCTTCTATTCCTTTTGTTTTTACG 57.257 30.769 0.00 0.00 0.00 3.18
2835 3457 9.612066 TCAAATGCTTCTATTCCTTTTGTTTTT 57.388 25.926 0.00 0.00 0.00 1.94
2836 3458 9.783081 ATCAAATGCTTCTATTCCTTTTGTTTT 57.217 25.926 0.00 0.00 0.00 2.43
2840 3462 8.991243 TCAATCAAATGCTTCTATTCCTTTTG 57.009 30.769 0.00 0.00 0.00 2.44
2847 3471 9.247861 ACCTTACTTCAATCAAATGCTTCTATT 57.752 29.630 0.00 0.00 0.00 1.73
3139 3893 6.061441 TGCATAAGAGAAACCAGTCTCAAAA 58.939 36.000 5.10 0.00 45.55 2.44
3149 3903 4.379918 GCCAAGTTCTGCATAAGAGAAACC 60.380 45.833 0.00 0.00 35.91 3.27
3188 3942 6.352222 CCTTTCACTGGACCATACTATCAAGT 60.352 42.308 0.00 0.00 39.91 3.16
3203 3957 4.451900 ACAACTTACTGACCTTTCACTGG 58.548 43.478 0.00 0.00 0.00 4.00
3208 3962 8.283291 CACATTCTTACAACTTACTGACCTTTC 58.717 37.037 0.00 0.00 0.00 2.62
3325 4079 1.149987 GTTCGACAAATACCGTGCCA 58.850 50.000 0.00 0.00 0.00 4.92
3332 4086 7.985634 AAATAATGGCATGTTCGACAAATAC 57.014 32.000 0.00 0.00 0.00 1.89
3428 4186 5.478332 GGGAAGAAACTTTCCAGATTGTGAT 59.522 40.000 7.07 0.00 46.89 3.06
3429 4187 4.827284 GGGAAGAAACTTTCCAGATTGTGA 59.173 41.667 7.07 0.00 46.89 3.58
3430 4188 4.584325 TGGGAAGAAACTTTCCAGATTGTG 59.416 41.667 7.36 0.00 46.89 3.33
3431 4189 4.803452 TGGGAAGAAACTTTCCAGATTGT 58.197 39.130 7.36 0.00 46.89 2.71
3432 4190 5.072741 TCTGGGAAGAAACTTTCCAGATTG 58.927 41.667 27.70 11.61 46.89 2.67
3433 4191 5.324832 TCTGGGAAGAAACTTTCCAGATT 57.675 39.130 27.70 0.00 46.89 2.40
3434 4192 5.320277 CTTCTGGGAAGAAACTTTCCAGAT 58.680 41.667 30.18 0.00 46.89 2.90
3435 4193 4.718961 CTTCTGGGAAGAAACTTTCCAGA 58.281 43.478 27.70 27.70 46.89 3.86
3436 4194 3.254411 GCTTCTGGGAAGAAACTTTCCAG 59.746 47.826 24.85 24.85 46.89 3.86
3437 4195 3.222603 GCTTCTGGGAAGAAACTTTCCA 58.777 45.455 10.57 10.57 46.89 3.53
3438 4196 3.004839 GTGCTTCTGGGAAGAAACTTTCC 59.995 47.826 10.94 2.15 44.82 3.13
3439 4197 3.885901 AGTGCTTCTGGGAAGAAACTTTC 59.114 43.478 10.94 0.00 0.00 2.62
3440 4198 3.903467 AGTGCTTCTGGGAAGAAACTTT 58.097 40.909 10.94 0.00 0.00 2.66
3441 4199 3.584733 AGTGCTTCTGGGAAGAAACTT 57.415 42.857 10.94 0.00 0.00 2.66
3442 4200 3.584733 AAGTGCTTCTGGGAAGAAACT 57.415 42.857 10.94 9.81 0.00 2.66
3443 4201 4.655762 AAAAGTGCTTCTGGGAAGAAAC 57.344 40.909 10.94 8.02 0.00 2.78
3463 4221 5.596763 TCCCCTTCTAGCTCCTAGTAAAAA 58.403 41.667 0.00 0.00 35.72 1.94
3464 4222 5.216665 TCCCCTTCTAGCTCCTAGTAAAA 57.783 43.478 0.00 0.00 35.72 1.52
3465 4223 4.894252 TCCCCTTCTAGCTCCTAGTAAA 57.106 45.455 0.00 0.00 35.72 2.01
3466 4224 4.894252 TTCCCCTTCTAGCTCCTAGTAA 57.106 45.455 0.00 0.00 35.72 2.24
3467 4225 4.894252 TTTCCCCTTCTAGCTCCTAGTA 57.106 45.455 0.00 0.00 35.72 1.82
3468 4226 3.778622 TTTCCCCTTCTAGCTCCTAGT 57.221 47.619 0.00 0.00 35.72 2.57
3469 4227 5.131142 TGATTTTTCCCCTTCTAGCTCCTAG 59.869 44.000 0.00 0.00 35.57 3.02
3470 4228 5.036916 TGATTTTTCCCCTTCTAGCTCCTA 58.963 41.667 0.00 0.00 0.00 2.94
3471 4229 3.852578 TGATTTTTCCCCTTCTAGCTCCT 59.147 43.478 0.00 0.00 0.00 3.69
3472 4230 3.948473 GTGATTTTTCCCCTTCTAGCTCC 59.052 47.826 0.00 0.00 0.00 4.70
3473 4231 4.589908 TGTGATTTTTCCCCTTCTAGCTC 58.410 43.478 0.00 0.00 0.00 4.09
3474 4232 4.657814 TGTGATTTTTCCCCTTCTAGCT 57.342 40.909 0.00 0.00 0.00 3.32
3475 4233 5.654209 AGATTGTGATTTTTCCCCTTCTAGC 59.346 40.000 0.00 0.00 0.00 3.42
3476 4234 6.096001 CCAGATTGTGATTTTTCCCCTTCTAG 59.904 42.308 0.00 0.00 0.00 2.43
3477 4235 5.951747 CCAGATTGTGATTTTTCCCCTTCTA 59.048 40.000 0.00 0.00 0.00 2.10
3478 4236 4.774200 CCAGATTGTGATTTTTCCCCTTCT 59.226 41.667 0.00 0.00 0.00 2.85
3479 4237 4.772100 TCCAGATTGTGATTTTTCCCCTTC 59.228 41.667 0.00 0.00 0.00 3.46
3480 4238 4.750941 TCCAGATTGTGATTTTTCCCCTT 58.249 39.130 0.00 0.00 0.00 3.95
3481 4239 4.402616 TCCAGATTGTGATTTTTCCCCT 57.597 40.909 0.00 0.00 0.00 4.79
3482 4240 5.012046 AGTTTCCAGATTGTGATTTTTCCCC 59.988 40.000 0.00 0.00 0.00 4.81
3483 4241 6.101650 AGTTTCCAGATTGTGATTTTTCCC 57.898 37.500 0.00 0.00 0.00 3.97
3484 4242 7.928167 AGAAAGTTTCCAGATTGTGATTTTTCC 59.072 33.333 12.05 0.00 0.00 3.13
3485 4243 8.877808 AGAAAGTTTCCAGATTGTGATTTTTC 57.122 30.769 12.05 0.00 0.00 2.29
3486 4244 9.317936 GAAGAAAGTTTCCAGATTGTGATTTTT 57.682 29.630 12.05 0.00 0.00 1.94
3487 4245 8.699130 AGAAGAAAGTTTCCAGATTGTGATTTT 58.301 29.630 12.05 0.00 0.00 1.82
3488 4246 8.139989 CAGAAGAAAGTTTCCAGATTGTGATTT 58.860 33.333 12.05 0.00 0.00 2.17
3489 4247 7.286316 ACAGAAGAAAGTTTCCAGATTGTGATT 59.714 33.333 12.05 0.00 0.00 2.57
3490 4248 6.774656 ACAGAAGAAAGTTTCCAGATTGTGAT 59.225 34.615 12.05 0.00 0.00 3.06
3581 4340 5.112686 GCTACCACTCTCCAGTAAATTCAG 58.887 45.833 0.00 0.00 0.00 3.02
3598 4357 1.340991 GGCTCAAAGGGAATGCTACCA 60.341 52.381 0.00 0.00 0.00 3.25
3674 4433 3.118454 CCCAGCAACTACGTGGCG 61.118 66.667 0.00 0.00 37.59 5.69
3675 4434 1.302192 TTCCCAGCAACTACGTGGC 60.302 57.895 0.00 0.00 31.62 5.01
3676 4435 1.289109 CGTTCCCAGCAACTACGTGG 61.289 60.000 0.00 0.00 0.00 4.94
3677 4436 1.289109 CCGTTCCCAGCAACTACGTG 61.289 60.000 0.00 0.00 0.00 4.49
3678 4437 1.005394 CCGTTCCCAGCAACTACGT 60.005 57.895 0.00 0.00 0.00 3.57
3679 4438 1.740296 CCCGTTCCCAGCAACTACG 60.740 63.158 0.00 0.00 0.00 3.51
3680 4439 1.376812 CCCCGTTCCCAGCAACTAC 60.377 63.158 0.00 0.00 0.00 2.73
3683 4442 2.114411 TTCCCCGTTCCCAGCAAC 59.886 61.111 0.00 0.00 0.00 4.17
3684 4443 2.114411 GTTCCCCGTTCCCAGCAA 59.886 61.111 0.00 0.00 0.00 3.91
3685 4444 3.172106 TGTTCCCCGTTCCCAGCA 61.172 61.111 0.00 0.00 0.00 4.41
3690 4449 2.671963 GGCACTGTTCCCCGTTCC 60.672 66.667 0.00 0.00 0.00 3.62
3691 4450 2.112297 TGGCACTGTTCCCCGTTC 59.888 61.111 0.00 0.00 0.00 3.95
3692 4451 2.203294 GTGGCACTGTTCCCCGTT 60.203 61.111 11.13 0.00 0.00 4.44
3693 4452 4.619227 CGTGGCACTGTTCCCCGT 62.619 66.667 16.72 0.00 0.00 5.28
3694 4453 4.619227 ACGTGGCACTGTTCCCCG 62.619 66.667 16.72 0.00 0.00 5.73
3699 4458 3.168528 AGGGGACGTGGCACTGTT 61.169 61.111 16.72 0.00 0.00 3.16
3700 4459 3.941188 CAGGGGACGTGGCACTGT 61.941 66.667 16.72 14.87 40.97 3.55
3714 4473 0.179119 GTCGATGTTCCCGGTACAGG 60.179 60.000 4.87 4.87 0.00 4.00
3715 4474 0.179119 GGTCGATGTTCCCGGTACAG 60.179 60.000 11.67 0.00 0.00 2.74
3716 4475 1.606885 GGGTCGATGTTCCCGGTACA 61.607 60.000 8.85 8.85 33.97 2.90
3717 4476 1.142531 GGGTCGATGTTCCCGGTAC 59.857 63.158 0.00 0.00 33.97 3.34
3718 4477 3.619938 GGGTCGATGTTCCCGGTA 58.380 61.111 0.00 0.00 33.97 4.02
3722 4481 1.069258 GATCCGGGTCGATGTTCCC 59.931 63.158 0.00 0.00 40.26 3.97
3723 4482 1.299926 CGATCCGGGTCGATGTTCC 60.300 63.158 33.40 0.00 44.06 3.62
3724 4483 1.731700 TCGATCCGGGTCGATGTTC 59.268 57.895 35.07 0.00 44.87 3.18
3725 4484 3.929002 TCGATCCGGGTCGATGTT 58.071 55.556 35.07 0.00 44.87 2.71
3736 4495 3.225061 GACCCCGACCCTCGATCC 61.225 72.222 0.00 0.00 43.74 3.36
3737 4496 3.593794 CGACCCCGACCCTCGATC 61.594 72.222 0.00 0.00 43.74 3.69
3738 4497 4.119363 TCGACCCCGACCCTCGAT 62.119 66.667 0.00 0.00 43.74 3.59
3746 4505 3.813606 TTCCCTGTGTCGACCCCGA 62.814 63.158 14.12 0.00 43.35 5.14
3747 4506 3.307906 TTCCCTGTGTCGACCCCG 61.308 66.667 14.12 0.00 37.07 5.73
3748 4507 2.346365 GTTCCCTGTGTCGACCCC 59.654 66.667 14.12 4.12 0.00 4.95
3749 4508 2.048503 CGTTCCCTGTGTCGACCC 60.049 66.667 14.12 0.94 0.00 4.46
3750 4509 1.372623 GACGTTCCCTGTGTCGACC 60.373 63.158 14.12 5.06 0.00 4.79
3751 4510 4.240049 GACGTTCCCTGTGTCGAC 57.760 61.111 9.11 9.11 0.00 4.20
3754 4513 3.103911 CGCGACGTTCCCTGTGTC 61.104 66.667 0.00 0.00 0.00 3.67
3755 4514 4.657824 CCGCGACGTTCCCTGTGT 62.658 66.667 8.23 0.00 0.00 3.72
3756 4515 4.351938 TCCGCGACGTTCCCTGTG 62.352 66.667 8.23 0.00 0.00 3.66
3757 4516 4.052229 CTCCGCGACGTTCCCTGT 62.052 66.667 8.23 0.00 0.00 4.00
3758 4517 4.796231 CCTCCGCGACGTTCCCTG 62.796 72.222 8.23 0.00 0.00 4.45
3760 4519 4.790861 GTCCTCCGCGACGTTCCC 62.791 72.222 8.23 0.00 0.00 3.97
3761 4520 4.047059 TGTCCTCCGCGACGTTCC 62.047 66.667 8.23 0.00 35.40 3.62
3762 4521 2.804090 GTGTCCTCCGCGACGTTC 60.804 66.667 8.23 0.00 35.40 3.95
3763 4522 4.353437 GGTGTCCTCCGCGACGTT 62.353 66.667 8.23 0.00 35.40 3.99
3765 4524 4.477975 GAGGTGTCCTCCGCGACG 62.478 72.222 8.23 0.00 44.36 5.12
3773 4532 0.647738 TGGGATATGGGAGGTGTCCT 59.352 55.000 0.00 0.00 43.36 3.85
3774 4533 1.143073 GTTGGGATATGGGAGGTGTCC 59.857 57.143 0.00 0.00 43.05 4.02
3775 4534 2.104963 GAGTTGGGATATGGGAGGTGTC 59.895 54.545 0.00 0.00 0.00 3.67
3776 4535 2.127708 GAGTTGGGATATGGGAGGTGT 58.872 52.381 0.00 0.00 0.00 4.16
3777 4536 1.421646 GGAGTTGGGATATGGGAGGTG 59.578 57.143 0.00 0.00 0.00 4.00
3778 4537 1.821088 GGAGTTGGGATATGGGAGGT 58.179 55.000 0.00 0.00 0.00 3.85
3779 4538 0.687354 CGGAGTTGGGATATGGGAGG 59.313 60.000 0.00 0.00 0.00 4.30
3780 4539 0.035458 GCGGAGTTGGGATATGGGAG 59.965 60.000 0.00 0.00 0.00 4.30
3781 4540 1.754380 CGCGGAGTTGGGATATGGGA 61.754 60.000 0.00 0.00 0.00 4.37
3785 4544 1.105167 TCGACGCGGAGTTGGGATAT 61.105 55.000 12.47 0.00 34.93 1.63
3805 4564 2.203408 TGGAACAATGGCACCGCA 60.203 55.556 0.00 0.00 31.92 5.69
3806 4565 2.568090 CTGGAACAATGGCACCGC 59.432 61.111 0.00 0.00 38.70 5.68
3807 4566 1.926511 GAGCTGGAACAATGGCACCG 61.927 60.000 0.00 0.00 38.70 4.94
3808 4567 1.598701 GGAGCTGGAACAATGGCACC 61.599 60.000 0.00 0.00 38.70 5.01
3809 4568 1.598701 GGGAGCTGGAACAATGGCAC 61.599 60.000 0.00 0.00 38.70 5.01
3810 4569 1.304381 GGGAGCTGGAACAATGGCA 60.304 57.895 0.00 0.00 38.70 4.92
3818 4577 3.089874 CGGATGGGGGAGCTGGAA 61.090 66.667 0.00 0.00 0.00 3.53
3821 4580 4.181010 CCACGGATGGGGGAGCTG 62.181 72.222 0.00 0.00 43.04 4.24
3844 4603 2.625737 CGCCTCTCATGACAACATCTT 58.374 47.619 0.00 0.00 34.15 2.40
3848 4607 1.375908 GGCGCCTCTCATGACAACA 60.376 57.895 22.15 0.00 0.00 3.33
3850 4609 1.375908 GTGGCGCCTCTCATGACAA 60.376 57.895 29.70 0.00 0.00 3.18
3852 4611 2.512515 GGTGGCGCCTCTCATGAC 60.513 66.667 29.70 15.38 0.00 3.06
3857 4616 3.461773 TAGCAGGTGGCGCCTCTC 61.462 66.667 29.70 17.42 46.96 3.20
3858 4617 3.775654 GTAGCAGGTGGCGCCTCT 61.776 66.667 29.70 21.68 46.96 3.69
3867 4626 0.914644 ACATCAGCATGGTAGCAGGT 59.085 50.000 8.51 0.00 36.16 4.00
3870 4629 0.749091 GCCACATCAGCATGGTAGCA 60.749 55.000 0.00 0.00 38.34 3.49
3871 4630 0.465097 AGCCACATCAGCATGGTAGC 60.465 55.000 0.00 0.00 38.34 3.58
3874 4633 0.620030 TACAGCCACATCAGCATGGT 59.380 50.000 0.00 0.00 38.34 3.55
3877 4636 1.315690 GCATACAGCCACATCAGCAT 58.684 50.000 0.00 0.00 37.23 3.79
3889 4648 0.886490 GGCGATGAAGGGGCATACAG 60.886 60.000 0.00 0.00 0.00 2.74
3897 4656 3.350031 AAGGCCTGGCGATGAAGGG 62.350 63.158 5.69 0.00 33.87 3.95
3909 4668 4.749310 CACGAGAGCGCAAGGCCT 62.749 66.667 11.47 0.00 45.17 5.19
3912 4671 4.379243 ACCCACGAGAGCGCAAGG 62.379 66.667 11.47 1.15 42.48 3.61
3913 4672 2.811317 GACCCACGAGAGCGCAAG 60.811 66.667 11.47 0.00 42.48 4.01
3914 4673 3.282745 GAGACCCACGAGAGCGCAA 62.283 63.158 11.47 0.00 42.48 4.85
3915 4674 3.749064 GAGACCCACGAGAGCGCA 61.749 66.667 11.47 0.00 42.48 6.09
3916 4675 4.838486 CGAGACCCACGAGAGCGC 62.838 72.222 0.00 0.00 42.48 5.92
3917 4676 4.838486 GCGAGACCCACGAGAGCG 62.838 72.222 0.00 0.00 44.79 5.03
3918 4677 4.500116 GGCGAGACCCACGAGAGC 62.500 72.222 0.00 0.00 0.00 4.09
3921 4680 4.477975 GACGGCGAGACCCACGAG 62.478 72.222 16.62 0.00 33.26 4.18
3943 4708 0.613260 GGCATGTGTCTGGGTAGTGA 59.387 55.000 0.00 0.00 0.00 3.41
3947 4712 0.991146 ACATGGCATGTGTCTGGGTA 59.009 50.000 30.96 0.00 43.01 3.69
3958 4723 0.318441 CGAGGTATCCGACATGGCAT 59.682 55.000 0.00 0.00 37.80 4.40
3959 4724 1.040893 ACGAGGTATCCGACATGGCA 61.041 55.000 0.00 0.00 37.80 4.92
3978 4743 2.280524 CTCCGTGCACGTTCCCAA 60.281 61.111 34.81 13.62 37.74 4.12
3993 4759 1.022735 CATGGCAACTGGAGATGCTC 58.977 55.000 8.58 0.95 42.51 4.26
4061 4827 1.216175 AGCAAGCACCATCCATACCAT 59.784 47.619 0.00 0.00 0.00 3.55
4062 4828 0.625316 AGCAAGCACCATCCATACCA 59.375 50.000 0.00 0.00 0.00 3.25
4065 4831 3.164268 ACAAAAGCAAGCACCATCCATA 58.836 40.909 0.00 0.00 0.00 2.74
4114 4882 2.753043 CGAATGCCCAGGCTTGCT 60.753 61.111 10.58 0.00 42.51 3.91
4115 4883 3.830192 CCGAATGCCCAGGCTTGC 61.830 66.667 10.58 0.96 42.51 4.01
4116 4884 2.361610 ACCGAATGCCCAGGCTTG 60.362 61.111 10.58 0.00 42.51 4.01
4119 4887 1.250840 AAAAGACCGAATGCCCAGGC 61.251 55.000 0.38 0.38 42.35 4.85
4121 4889 0.447801 CGAAAAGACCGAATGCCCAG 59.552 55.000 0.00 0.00 0.00 4.45
4124 4892 0.879090 AACCGAAAAGACCGAATGCC 59.121 50.000 0.00 0.00 0.00 4.40
4126 4894 2.031157 AGCAAACCGAAAAGACCGAATG 60.031 45.455 0.00 0.00 0.00 2.67
4127 4895 2.225727 GAGCAAACCGAAAAGACCGAAT 59.774 45.455 0.00 0.00 0.00 3.34
4148 4916 4.026804 CGAAAAGATCAATAGACCGAACGG 60.027 45.833 11.83 11.83 42.03 4.44
4149 4917 4.026804 CCGAAAAGATCAATAGACCGAACG 60.027 45.833 0.00 0.00 0.00 3.95
4157 4925 6.818644 TCTTGGAAGACCGAAAAGATCAATAG 59.181 38.462 0.00 0.00 39.42 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.